Citrus Sinensis ID: 029836

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVTLCRRIG
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHcccccEEEEEcccccccEEccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEcccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHccHHHEEEcHccHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHcccccccEEEEEEEcccHcHHHHHHHHHHHHccccEEEEEccccccEEccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHEccc
Coil and Loop (DISEMBL)
MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATAlaipddgkILALDITKEHYEKGLPIIQkagvahkidfregpalplldqliqdekyhgtfDFVFvdadkdnyvNYHKRLIELVKVGgvigydntlwggsvvappdadldeHFLYLRDFVQELNKAlavdprieiCQISIADGVTLCRRIG
Flexible Loop (DISEMBL)
MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALavdprieicqisiadgVTLCRRIG
Low Complexity Region (SEG)
MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVTLCRRIG
Disordered region (IsUnstruct)
********QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVTLCR***
Disordered Region (DISOPRED)
**TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVTLCRRIG
Disordered Region (DISEMBL)
********QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVTLCRRIG
Disordered Region (DISPRO)
**TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVTLCRRIG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVTLCRRIG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q43095	247	Caffeoyl-CoA O-methyltran	N/A	no	0.994	0.753	0.784	4e-86
Q43237	242	Caffeoyl-CoA O-methyltran	no	no	1.0	0.772	0.786	5e-86
Q8H9B6	242	Caffeoyl-CoA O-methyltran	N/A	no	0.994	0.768	0.784	7e-86
Q40313	247	Caffeoyl-CoA O-methyltran	N/A	no	0.994	0.753	0.790	3e-85
Q9SWB8	247	Caffeoyl-CoA O-methyltran	N/A	no	1.0	0.757	0.775	3e-85
Q41720	245	Caffeoyl-CoA O-methyltran	N/A	no	1.0	0.763	0.786	4e-85
O65862	247	Caffeoyl-CoA O-methyltran	yes	no	0.994	0.753	0.779	4e-85
O04899	240	Caffeoyl-CoA O-methyltran	N/A	no	0.994	0.775	0.779	6e-85
O24149	242	Caffeoyl-CoA O-methyltran	N/A	no	0.994	0.768	0.784	2e-84
Q42945	247	Caffeoyl-CoA O-methyltran	N/A	no	1.0	0.757	0.780	2e-84

>sp|Q43095|CAMT_POPTM Caffeoyl-CoA O-methyltransferase OS=Populus tremuloides PE=2 SV=1

 Score =  317 bits (811), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 146/186 (78%), Positives = 168/186 (90%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF +MLLKL+NAKNTMEIGV+TGYSLLATALAIP+DGKILA+DI +E+YE G
Sbjct: 61  MTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYELG 120

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP+IQKAGVAHKIDF+EGPALP+LDQ+I+D KYHG+FDF+FVDADKDNY+NYHKRLIELV
Sbjct: 121 LPVIQKAGVAHKIDFKEGPALPVLDQMIEDGKYHGSFDFIFVDADKDNYINYHKRLIELV 180

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGG+IGYDNTLW GSVVAPPDA + ++  Y RDFV ELNKALA DPRIEIC + + DG+
Sbjct: 181 KVGGLIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGI 240

Query: 181 TLCRRI 186
           TLCRRI
Sbjct: 241 TLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.
Populus tremuloides (taxid: 3693)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0EC: 4

>sp|Q43237|CAMT_VITVI Caffeoyl-CoA O-methyltransferase OS=Vitis vinifera PE=2 SV=1

 Score =  316 bits (810), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 147/187 (78%), Positives = 168/187 (89%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF +MLLKLINAKNTMEIGV+TGYSLLATALA+PDDGKILA+DI KE+YE G
Sbjct: 56  MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPDDGKILAMDINKENYELG 115

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP+IQKAGVAHKIDF+EGPALP+LDQ+I+D KYHG+FDF+FVDADKDNY+NYHKRLI+LV
Sbjct: 116 LPVIQKAGVAHKIDFKEGPALPVLDQMIEDGKYHGSFDFIFVDADKDNYLNYHKRLIDLV 175

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGG+IGYDNTLW GSVVAPPDA L ++  Y RDFV ELNKALA DPRIEIC + + DG+
Sbjct: 176 KVGGIIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGI 235

Query: 181 TLCRRIG 187
           TLCRR+ 
Sbjct: 236 TLCRRLS 242

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Vitis vinifera (taxid: 29760)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q8H9B6|CAMT_SOLTU Caffeoyl-CoA O-methyltransferase OS=Solanum tuberosum GN=CCOAOMT PE=2 SV=1

 Score =  316 bits (809), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 146/186 (78%), Positives = 169/186 (90%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF +MLLKLINAKNTMEIGVFTGYSLLATA+A+PDDGKILA+DI +E+YE G
Sbjct: 56  MTTSADEGQFLNMLLKLINAKNTMEIGVFTGYSLLATAMALPDDGKILAMDINRENYEIG 115

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP+I+KAG+AHKIDFREGPALP+LDQ+I+D KYHG++DF+FVDADKDNY+NYHKRLI+LV
Sbjct: 116 LPVIEKAGLAHKIDFREGPALPVLDQMIEDGKYHGSYDFIFVDADKDNYLNYHKRLIDLV 175

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGG+IGYDNTLW GSVVAPPDA L ++  Y RDFV ELNKALA DPRIEICQ+ + DG+
Sbjct: 176 KVGGLIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICQLPVGDGI 235

Query: 181 TLCRRI 186
           TLCRRI
Sbjct: 236 TLCRRI 241

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q40313|CAMT_MEDSA Caffeoyl-CoA O-methyltransferase OS=Medicago sativa GN=CCOMT PE=1 SV=1

 Score =  314 bits (804), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 147/186 (79%), Positives = 168/186 (90%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF SMLLKLINAKNTMEIGV+TGYSLLATALAIP+DGKILA+DI KE+YE G
Sbjct: 61  MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELG 120

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP+I+KAGV HKIDFREGPALP+LD++I+DEK HG++DF+FVDADKDNY+NYHKRLI+LV
Sbjct: 121 LPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLV 180

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGGVIGYDNTLW GSVVAPPDA L ++  Y RDFV ELNKALAVDPRIEIC + + DG+
Sbjct: 181 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGI 240

Query: 181 TLCRRI 186
           T+CRRI
Sbjct: 241 TICRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9SWB8|CAMT2_EUCGL Caffeoyl-CoA O-methyltransferase 2 OS=Eucalyptus globulus GN=CCOAOMT2 PE=2 SV=1

 Score =  313 bits (803), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 145/187 (77%), Positives = 168/187 (89%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF +MLLKLINAKNTMEIGV+TGYSLLATALA+PDDGKILA+DI +E++E G
Sbjct: 61  MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENFEIG 120

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP+I+KAG+AHKIDFREGPALPLLDQL+QDEK HGT+DF+FVDADKDNY+NYHKRLI+LV
Sbjct: 121 LPVIEKAGLAHKIDFREGPALPLLDQLVQDEKNHGTYDFIFVDADKDNYINYHKRLIDLV 180

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGG+IGYDNTLW GSVVAP DA L ++  Y RDFV ELNKALAVDPR+EIC + + DG+
Sbjct: 181 KVGGLIGYDNTLWNGSVVAPADAPLRKYVRYYRDFVLELNKALAVDPRVEICMLPVGDGI 240

Query: 181 TLCRRIG 187
           TLCRR+ 
Sbjct: 241 TLCRRVS 247

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Eucalyptus globulus (taxid: 34317)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q41720|CAMT_ZINEL Caffeoyl-CoA O-methyltransferase OS=Zinnia elegans GN=CCOAOMT PE=2 SV=1

 Score =  313 bits (802), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 147/187 (78%), Positives = 168/187 (89%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF ++LLKLINAKNTMEIGV+TGYSLL+TALA+P+DGKILALDI +E+YE G
Sbjct: 59  MTTSADEGQFLNLLLKLINAKNTMEIGVYTGYSLLSTALALPEDGKILALDINRENYEIG 118

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LPIIQKAGVAHKIDFREGPALPLLDQ++QDEK HG+FDF+FVDADKDNY+NYHKRLI+LV
Sbjct: 119 LPIIQKAGVAHKIDFREGPALPLLDQMLQDEKCHGSFDFIFVDADKDNYLNYHKRLIDLV 178

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           K GGVIGYDNTLW GS+VAP DA L ++  Y RDFV ELNKALAVDPR+EICQ+ + DG+
Sbjct: 179 KFGGVIGYDNTLWNGSLVAPADAPLRKYVRYYRDFVLELNKALAVDPRVEICQLPVGDGI 238

Query: 181 TLCRRIG 187
           TLCRRI 
Sbjct: 239 TLCRRIS 245

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Zinnia elegans (taxid: 34245)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65862|CAMT1_POPTR Caffeoyl-CoA O-methyltransferase 1 OS=Populus trichocarpa GN=CCOAOMT1 PE=2 SV=1

 Score =  313 bits (802), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 145/186 (77%), Positives = 167/186 (89%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF +MLLKL+NAKNTMEIGV+TGYSLLATALAIP+DGKILA+DI +E+YE G
Sbjct: 61  MTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYELG 120

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP+IQKAGVAHKIDF+EGPALP+LDQ+I+D K HG+FDF+FVDADKDNY+NYHKRLIELV
Sbjct: 121 LPVIQKAGVAHKIDFKEGPALPVLDQMIEDGKCHGSFDFIFVDADKDNYINYHKRLIELV 180

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGG+IGYDNTLW GSVVAPPDA + ++  Y RDFV ELNKALA DPRIEIC + + DG+
Sbjct: 181 KVGGLIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGI 240

Query: 181 TLCRRI 186
           TLCRRI
Sbjct: 241 TLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O04899|CAMT5_TOBAC Caffeoyl-CoA O-methyltransferase 5 OS=Nicotiana tabacum GN=CCOAOMT5 PE=2 SV=1

 Score =  313 bits (801), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 145/186 (77%), Positives = 168/186 (90%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF +MLLKLINAKNTMEIGV+TGYSLLATALAIPDDGKILA+DI +E+YE G
Sbjct: 54  MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALAIPDDGKILAMDINRENYEIG 113

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LPII+KAGVAHKI+FREGPALP+LDQL++D+K HGT+DF+FVDADKDNY+NYHKR+I+LV
Sbjct: 114 LPIIEKAGVAHKIEFREGPALPVLDQLVEDKKNHGTYDFIFVDADKDNYINYHKRIIDLV 173

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGG+IGYDNTLW GSVVAPPDA + ++  Y RDFV ELNKALA DPRIEIC + + DG+
Sbjct: 174 KVGGLIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGI 233

Query: 181 TLCRRI 186
           TLCRRI
Sbjct: 234 TLCRRI 239

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers. Methylates 5-hydroxyferulolyl-CoA more efficiently than caffeoyl-CoA.

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O24149|CAMT2_TOBAC Caffeoyl-CoA O-methyltransferase 2 OS=Nicotiana tabacum GN=CCOAOMT2 PE=2 SV=1

 Score =  311 bits (797), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 146/186 (78%), Positives = 167/186 (89%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF SMLLKLINAKNTMEIGVFTGYSLLATA+A+PDDGKILA+DI +E+YE G
Sbjct: 56  MTTSADEGQFLSMLLKLINAKNTMEIGVFTGYSLLATAMALPDDGKILAMDINRENYEIG 115

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LPII+KAG+AHKI FREGPALP+LDQ+I+D KYHG++DF+FVDADKDNY+NYHKRLI+LV
Sbjct: 116 LPIIEKAGLAHKIVFREGPALPVLDQMIEDGKYHGSYDFIFVDADKDNYLNYHKRLIDLV 175

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGG+IGYDNTLW GSVVAPPDA L ++  Y RDFV ELNKALA D RIEICQ+ + DG+
Sbjct: 176 KVGGLIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADSRIEICQLPVGDGI 235

Query: 181 TLCRRI 186
           TLCRRI
Sbjct: 236 TLCRRI 241

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers. Methylates 5-hydroxyferulolyl-CoA more efficiently than caffeoyl-CoA.

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q42945|CAMT6_TOBAC Caffeoyl-CoA O-methyltransferase 6 OS=Nicotiana tabacum GN=CCOAOMT6 PE=2 SV=1

 Score =  311 bits (797), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 146/187 (78%), Positives = 165/187 (88%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF SMLLKLI AKNTMEIGV+TGYSLLATALA+PDDGKILA+DI KE+YE G
Sbjct: 61  MTTSADEGQFLSMLLKLIIAKNTMEIGVYTGYSLLATALALPDDGKILAMDINKENYELG 120

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP+IQKAGVAHKIDFREGPALP+LD +I+D+  HGT+DF+FVDADKDNY+NYHKR+IELV
Sbjct: 121 LPVIQKAGVAHKIDFREGPALPVLDLMIEDKNNHGTYDFIFVDADKDNYINYHKRIIELV 180

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGGVIGYDNTLW GSVVAPPDA + ++  Y RDFV ELNKALA DPRIEIC + + DG+
Sbjct: 181 KVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGI 240

Query: 181 TLCRRIG 187
           TLCRRI 
Sbjct: 241 TLCRRIS 247

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers. Methylates almost exclusively caffeoyl-CoA.

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
194321206	247	caffeoyl-CoA-O-methyltransferase [Gossyp	0.994	0.753	0.795	3e-85
340548706	247	caffeoyl-CoA 3-O-methyltransferase [Dimo	0.994	0.753	0.806	5e-85
381218036	247	caffeoyl-CoA O-methyltransferase [Paeoni	0.994	0.753	0.801	6e-85
229368458	250	caffeoyl CoA O-methyltransferase 1 [Goss	0.994	0.744	0.790	7e-85
207059704	247	caffeoyl CoA O-methyltransferase [Cartha	1.0	0.757	0.791	1e-84
428231165	247	caffeoyl-CoA O-methyltransferase [Lonice	1.0	0.757	0.802	1e-84
47680455	247	caffeoyl-CoA-O-methyltransferase [Brouss	0.994	0.753	0.790	1e-84
225438756	247	PREDICTED: caffeoyl-CoA O-methyltransfer	1.0	0.757	0.791	2e-84
57639629	247	caffeoyl CoA 3-O-methyltransferase [Betu	0.994	0.753	0.801	2e-84
147769443	247	hypothetical protein VITISV_037012 [Viti	0.994	0.753	0.795	2e-84

>gi|194321206|gb|ACF48821.1| caffeoyl-CoA-O-methyltransferase [Gossypium hirsutum]

 Score =  319 bits (818), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 148/186 (79%), Positives = 169/186 (90%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF +MLLKLINAKNTMEIGV+TGYSLLATALAIPDDGKILA+D+ +E+YE G
Sbjct: 61  MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALAIPDDGKILAMDVNRENYELG 120

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP+IQKAGVAHKIDF+EGPALP+LDQL++DEK HG+FDF+FVDADKDNY+NYHKRLIELV
Sbjct: 121 LPVIQKAGVAHKIDFKEGPALPVLDQLVEDEKNHGSFDFIFVDADKDNYLNYHKRLIELV 180

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGG+IGYDNTLW GSVVAPPDA L ++  Y RDFV ELNKALAVDPRIEIC + + DG+
Sbjct: 181 KVGGLIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVMELNKALAVDPRIEICMLPVGDGI 240

Query: 181 TLCRRI 186
           TLCRR+
Sbjct: 241 TLCRRL 246

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|340548706|gb|AEK52482.1| caffeoyl-CoA 3-O-methyltransferase [Dimocarpus longan]

 Score =  318 bits (816), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 150/186 (80%), Positives = 167/186 (89%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF SMLLKLINAKNTMEIGV+TGYSLLATALA+P+DGKILA+DI +E+YE G
Sbjct: 61  MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELG 120

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP+IQKAGVAHKIDFREGPA+PLLDQLI+DEK HG+FDF+FVDADKDNY+NYHKRLIELV
Sbjct: 121 LPVIQKAGVAHKIDFREGPAMPLLDQLIEDEKNHGSFDFIFVDADKDNYLNYHKRLIELV 180

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGGVIGYDNTLW G+VVAPPDA L ++  Y RDFV ELNKAL  DPRIEIC + + DGV
Sbjct: 181 KVGGVIGYDNTLWNGTVVAPPDAPLRKYVRYYRDFVLELNKALPADPRIEICMLPVGDGV 240

Query: 181 TLCRRI 186
           TLCRRI
Sbjct: 241 TLCRRI 246

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381218036|gb|AFG17073.1| caffeoyl-CoA O-methyltransferase [Paeonia lactiflora]

 Score =  318 bits (815), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 149/186 (80%), Positives = 168/186 (90%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF +ML+KLINAKNTMEIGV+TGYSLLATALA+PDDGK+LA+DI +E+YE G
Sbjct: 61  MTTSADEGQFLNMLIKLINAKNTMEIGVYTGYSLLATALALPDDGKVLAMDINRENYELG 120

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LPII+KAGVAHKIDFREGPALP+LDQ+IQD KYHGTFDF+FVDADKDNY+NYHKRLI+LV
Sbjct: 121 LPIIEKAGVAHKIDFREGPALPVLDQMIQDGKYHGTFDFIFVDADKDNYINYHKRLIDLV 180

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGGVIGYDNTLW GSVVAPPDA L ++  Y RDFV ELNKALA D RIEICQ+ + DG+
Sbjct: 181 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADQRIEICQLPVGDGI 240

Query: 181 TLCRRI 186
           TLCRRI
Sbjct: 241 TLCRRI 246

Source: Paeonia lactiflora

Species: Paeonia lactiflora

Genus: Paeonia

Family: Paeoniaceae

Order: Saxifragales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|229368458|gb|ACQ59095.1| caffeoyl CoA O-methyltransferase 1 [Gossypium hirsutum]

 Score =  318 bits (814), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 147/186 (79%), Positives = 169/186 (90%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF +MLLKLINAKNTMEIGV+TGYSLLATALA+PDDGKILA+DI +E+YE G
Sbjct: 64  MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALAVPDDGKILAMDINRENYELG 123

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP+IQKAGVAHKIDF+EGPA+P+LD+L+QDEK HG+FDF+FVDADKDNY+NYHKRLIELV
Sbjct: 124 LPVIQKAGVAHKIDFKEGPAMPVLDELVQDEKNHGSFDFIFVDADKDNYLNYHKRLIELV 183

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGG+IGYDNTLW GSVVAPPDA L ++  Y RDFV ELNKALAVDPRIEIC + + DG+
Sbjct: 184 KVGGLIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGI 243

Query: 181 TLCRRI 186
           TLCRR+
Sbjct: 244 TLCRRL 249

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|207059704|dbj|BAG71892.1| caffeoyl CoA O-methyltransferase [Carthamus tinctorius]

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/187 (79%), Positives = 169/187 (90%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF S+LLKLINAKNTMEIGV+TGYSLL+TALA+PDDGKILALDI +E+YE G
Sbjct: 61  MTTSADEGQFLSLLLKLINAKNTMEIGVYTGYSLLSTALALPDDGKILALDINRENYEIG 120

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LPII+KA VAHKIDFREGPALPLLDQ+I DEK+HG+FDF+FVDADKDNY+NYHKRLI+LV
Sbjct: 121 LPIIEKARVAHKIDFREGPALPLLDQMINDEKFHGSFDFIFVDADKDNYLNYHKRLIDLV 180

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           K+GGVIGYDNTLW GS+VAPPDA L ++  Y RDFV ELNKALA+DPRIEICQ+ + DG+
Sbjct: 181 KIGGVIGYDNTLWNGSLVAPPDAPLRKYVRYYRDFVLELNKALAIDPRIEICQLPVGDGI 240

Query: 181 TLCRRIG 187
           TLCRRI 
Sbjct: 241 TLCRRIN 247

Source: Carthamus tinctorius

Species: Carthamus tinctorius

Genus: Carthamus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|428231165|gb|AFZ15799.1| caffeoyl-CoA O-methyltransferase [Lonicera japonica]

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 150/187 (80%), Positives = 168/187 (89%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF +MLLKLINAKNTMEIGV+TGYSLLATALAIPDDGKILA+DI KE+YE G
Sbjct: 61  MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALAIPDDGKILAMDINKENYELG 120

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LPII+KAG+AHKI+FREG ALP+LDQ+IQDE YHGTFDF+FVDADKDNY+NYHKRLI+LV
Sbjct: 121 LPIIEKAGLAHKIEFREGSALPVLDQMIQDENYHGTFDFIFVDADKDNYLNYHKRLIDLV 180

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGG+IGYDNTLW GSVVAPPDA + ++  Y RDFV ELNKALAVDPRIEIC + I DG+
Sbjct: 181 KVGGLIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAVDPRIEICMLPIGDGI 240

Query: 181 TLCRRIG 187
           TLCRRI 
Sbjct: 241 TLCRRIS 247

Source: Lonicera japonica

Species: Lonicera japonica

Genus: Lonicera

Family: Caprifoliaceae

Order: Dipsacales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47680455|gb|AAT37172.1| caffeoyl-CoA-O-methyltransferase [Broussonetia papyrifera]

 Score =  317 bits (812), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 147/186 (79%), Positives = 168/186 (90%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF +MLLKLINAKNTMEIGV+TGYSLLATALA+PDDGKILA+DI +E+YE G
Sbjct: 61  MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELG 120

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP+I+KAGVAHKIDFREGPALP+LDQ+I+D KYHG+FDF+FVDADKDNY+NYHKRLIELV
Sbjct: 121 LPVIEKAGVAHKIDFREGPALPVLDQMIEDGKYHGSFDFIFVDADKDNYLNYHKRLIELV 180

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGGVIGYDNTLW GSVVAPPDA L ++  Y RDFV ELNKALA DPRIEIC + + DG+
Sbjct: 181 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGI 240

Query: 181 TLCRRI 186
           T+CRR+
Sbjct: 241 TVCRRV 246

Source: Broussonetia papyrifera

Species: Broussonetia papyrifera

Genus: Broussonetia

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438756|ref|XP_002282867.1| PREDICTED: caffeoyl-CoA O-methyltransferase [Vitis vinifera] gi|296082396|emb|CBI21401.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/187 (79%), Positives = 169/187 (90%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF +MLLKLINAKNTMEIGV+TGYSLLATALA+PDDGKILA+DI +E+YE G
Sbjct: 61  MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELG 120

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LPII+KAG+AHKIDFREGPALP+LDQ+I+D KYHGTFDF+FVDADKDNY+NYHKRLI+LV
Sbjct: 121 LPIIEKAGLAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYLNYHKRLIDLV 180

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGG+IGYDNTLW GSVVAPPDA L ++  Y +DFV ELNKALA DPRIEICQ+ + DG+
Sbjct: 181 KVGGLIGYDNTLWNGSVVAPPDAPLRKYVRYYKDFVLELNKALAADPRIEICQLPVGDGI 240

Query: 181 TLCRRIG 187
           TLCRRI 
Sbjct: 241 TLCRRIS 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57639629|gb|AAW55668.1| caffeoyl CoA 3-O-methyltransferase [Betula platyphylla]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 149/186 (80%), Positives = 167/186 (89%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF +MLLKLINAKNTMEIGV+TGYSLLATALA+PDDGKILA+DI +E+YE G
Sbjct: 61  MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELG 120

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP+I+KAGVAHKIDFREGPALPLLDQLI DEK HG++DF+FVDADKDNY+NYHKRLI+LV
Sbjct: 121 LPVIEKAGVAHKIDFREGPALPLLDQLIADEKNHGSYDFIFVDADKDNYINYHKRLIDLV 180

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGGVIGYDNTLW GSVVAPPDA L ++  Y RDFV ELNKALA DPRIEIC + + DG+
Sbjct: 181 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGI 240

Query: 181 TLCRRI 186
           TLCRRI
Sbjct: 241 TLCRRI 246

Source: Betula platyphylla

Species: Betula platyphylla

Genus: Betula

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769443|emb|CAN72492.1| hypothetical protein VITISV_037012 [Vitis vinifera]

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/186 (79%), Positives = 169/186 (90%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF +MLLKLINAKNTMEIGV+TGYSLLATALA+PDDGKILA+DI +E+YE G
Sbjct: 61  MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELG 120

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LPII+KAG+AHKIDFREGPALP+LDQ+I+D KYHGTFDF+FVDADKDNY+NYHKRLI+LV
Sbjct: 121 LPIIEKAGLAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYLNYHKRLIDLV 180

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGG+IGYDNTLW GSVVAPPDA L ++  Y +DFV ELNKALA DPRIEICQ+ + DG+
Sbjct: 181 KVGGLIGYDNTLWNGSVVAPPDAPLRKYVRYYKDFVLELNKALAADPRIEICQLPVGDGI 240

Query: 181 TLCRRI 186
           TLCRRI
Sbjct: 241 TLCRRI 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2124286	259	CCoAOMT1 "caffeoyl coenzyme A	0.994	0.718	0.752	1e-77
UNIPROTKB|Q7F8T6	292	ROMT-17 "Tricin synthase 2" [O	0.994	0.636	0.564	7.5e-57
UNIPROTKB|Q9XGP7	252	ROMT-15 "Tricin synthase 1" [O	0.978	0.726	0.578	2e-56
TAIR|locus:2136799	232	CCoAOMT7 "caffeoyl coenzyme A	0.989	0.797	0.569	4.2e-56
TAIR|locus:2200271	232	CCOAMT "caffeoyl-CoA 3-O-methy	0.946	0.762	0.591	2.7e-52
TAIR|locus:2200256	233	TSM1 [Arabidopsis thaliana (ta	0.951	0.763	0.546	9.8e-48
ZFIN|ZDB-GENE-030131-1072	286	comtd1 "catechol-O-methyltrans	0.935	0.611	0.406	2.7e-36
UNIPROTKB|F1NI85	267	COMTD1 "Uncharacterized protei	0.935	0.655	0.434	6.5e-35
DICTYBASE|DDB_G0275501	231	omt6 "O-methyltransferase fami	0.962	0.779	0.397	8.5e-33
DICTYBASE|DDB_G0275499	230	omt5 "O-methyltransferase fami	0.962	0.782	0.392	1.1e-32

TAIR|locus:2124286 CCoAOMT1 "caffeoyl coenzyme A O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 140/186 (75%), Positives = 167/186 (89%)

Query:     1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
             M TS DE QF +ML+KL+NAKNTMEIGV+TGYSLLATALA+P+DGKILA+D+ +E+YE G
Sbjct:    73 MTTSADEGQFLNMLIKLVNAKNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENYELG 132

Query:    61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
             LPII+KAGVAHKIDFREGPALP+LD+++ DEK HGT+DF+FVDADKDNY+NYHKRLI+LV
Sbjct:   133 LPIIEKAGVAHKIDFREGPALPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLIDLV 192

Query:   121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
             K+GGVIGYDNTLW GSVVAPPDA + ++  Y RDFV ELNKALA DPRIEIC + + DG+
Sbjct:   193 KIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGI 252

Query:   181 TLCRRI 186
             T+CRRI
Sbjct:   253 TICRRI 258

GO:0005634 "nucleus" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009805 "coumarin biosynthetic process" evidence=RCA;IMP

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q7F8T6 ROMT-17 "Tricin synthase 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 105/186 (56%), Positives = 143/186 (76%)

Query:     1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
             M + P+E Q  S+LL L  AKNT+E+GVFTG S+LATALAIPDDGK++A+D+++E+++ G
Sbjct:   106 MSSPPEEGQLLSLLLNLTGAKNTIEVGVFTGCSVLATALAIPDDGKVVAIDVSREYFDLG 165

Query:    61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
             LP+I+KAGVAHK+DFREG A+P+LD L+ +E+  G FDF FVDADK NY  YH+RL+ LV
Sbjct:   166 LPVIKKAGVAHKVDFREGAAMPILDNLLANEENEGKFDFAFVDADKGNYGEYHERLLRLV 225

Query:   121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
             + GGV+ YDNTLWGGSV    D+ L+E    +R  +   N  +A DPR+E  Q+ ++DG+
Sbjct:   226 RAGGVLAYDNTLWGGSVALEDDSVLEEFDQDIRRSIVAFNAKIAGDPRVEAVQLPVSDGI 285

Query:   181 TLCRRI 186
             TLCRR+
Sbjct:   286 TLCRRL 291

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|Q9XGP7 ROMT-15 "Tricin synthase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 111/192 (57%), Positives = 144/192 (75%)

Query:     1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
             M +S DEAQ   MLLK+  AK T+E+GVFTGYSLLATALA+P+DGK++A+D  +E YE G
Sbjct:    63 MQSSADEAQLLGMLLKMAGAKRTIEVGVFTGYSLLATALALPEDGKVVAIDPDRESYEIG 122

Query:    61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG---TFDFVFVDADKDNYVNYHKRLI 117
              P ++KAGVAHK+DFREG  L  LD+L+ +E   G    FDF FVDADK NYV YH++L+
Sbjct:   123 RPFLEKAGVAHKVDFREGKGLEKLDELLAEEAAAGREAAFDFAFVDADKPNYVKYHEQLL 182

Query:   118 ELVKVGGVIGYDNTLWGGSVVAPPD---ADLDEHFLYLRDFVQELNKALAVDPRIEICQI 174
             +LV+VGG I YDNTLW G+V  PPD   +DLD  F      +++LN  LA DPRI++CQ+
Sbjct:   183 QLVRVGGHIVYDNTLWAGTVALPPDTPLSDLDRRFSVA---IRDLNSRLAADPRIDVCQL 239

Query:   175 SIADGVTLCRRI 186
             +IADG+T+CRR+
Sbjct:   240 AIADGITICRRL 251

GO:0005634 "nucleus" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2136799 CCoAOMT7 "caffeoyl coenzyme A ester O-methyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 106/186 (56%), Positives = 141/186 (75%)

Query:     1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
             M T+PD  Q   MLL L+NA+ T+E+GVFTGYSLL TAL +P+DGK++A+D+ ++ YE G
Sbjct:    47 MATAPDAGQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIG 106

Query:    61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
             LP+I+KAGV HKIDF+E  ALP LD+L+ ++   G FDF FVDADK NY NYH+RLI L+
Sbjct:   107 LPVIKKAGVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLI 166

Query:   121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
             KVGG+I YDNTLWGGSV A PD+   E  + ++    ELNK L+ D R++I Q ++ DG+
Sbjct:   167 KVGGIIVYDNTLWGGSV-AEPDSSTPEWRIEVKKATLELNKKLSADQRVQISQAALGDGI 225

Query:   181 TLCRRI 186
             T+CRR+
Sbjct:   226 TICRRL 231

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

TAIR|locus:2200271 CCOAMT "caffeoyl-CoA 3-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 107/181 (59%), Positives = 133/181 (73%)

Query:     6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ 65
             DE  F SML+K++NAKNT+EIGVFTGYSLL TALA+P+DG+I A+DI KE YE GL  I+
Sbjct:    55 DEGHFLSMLVKIMNAKNTIEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIK 114

Query:    66 KAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGV 125
             KAGV HKI+F     L  LDQL+ D+     FDF F DADK +YVN+H+RL++LVKVGG+
Sbjct:   115 KAGVDHKINFIHSDGLKALDQLVNDKC---EFDFAFADADKSSYVNFHERLLKLVKVGGI 171

Query:   126 IGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVTLCRR 185
             I +DNTLW G V    D  + EH    R  + E NK LA+DPR+E+ QISI DG+TLCRR
Sbjct:   172 IAFDNTLWFGFVAEDEDG-VPEHMREYRAALIEFNKKLALDPRVEVSQISIGDGITLCRR 230

Query:   186 I 186
             +
Sbjct:   231 L 231

GO:0005737 "cytoplasm" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

TAIR|locus:2200256 TSM1 [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 99/181 (54%), Positives = 133/181 (73%)

Query:     6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ 65
             DE+ F SML+K+INAKNT+EIGVFTGYSL   ALA+P+DG+I A+DI +  Y  GL  ++
Sbjct:    55 DESLFLSMLVKIINAKNTIEIGVFTGYSLFTVALALPEDGRITAIDIDQAGYNLGLEFMK 114

Query:    66 KAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGV 125
             KAGV HKI+F +  A+  LDQL+  EK    +DF FVDADK NYV + ++L++LVKVGG+
Sbjct:   115 KAGVDHKINFIQSDAVRGLDQLLNGEKQE--YDFAFVDADKTNYVYFLEKLLKLVKVGGI 172

Query:   126 IGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVTLCRR 185
             I +DNTLW G+++   + ++  H    R+ + E NK LA DPR+EI QISI DG+TLCRR
Sbjct:   173 IAFDNTLWFGTLIQKEN-EVPGHMRAYREALLEFNKILARDPRVEIAQISIGDGLTLCRR 231

Query:   186 I 186
             +
Sbjct:   232 L 232

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0048316 "seed development" evidence=IMP

GO:0080012 "trihydroxyferuloyl spermidine O-methyltransferase activity" evidence=IMP;IDA

GO:0080076 "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080077 "trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080078 "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080088 "spermidine hydroxycinnamate conjugate biosynthetic process" evidence=IDA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

ZFIN|ZDB-GENE-030131-1072 comtd1 "catechol-O-methyltransferase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 74/182 (40%), Positives = 120/182 (65%)

Query:     1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
             MM + ++AQ  + L KLI A  T+EIG++TGY+ L+ AL +P++G+++A +I +++ + G
Sbjct:   108 MMVASEQAQLMANLAKLIEANKTIEIGLYTGYNALSLALVVPENGRVVACEINEDYVKIG 167

Query:    61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
              P   +AGV +KID R  PA+  LD+L+   +  G +DFVF+DADK NY  Y+++ ++LV
Sbjct:   168 KPFFAEAGVENKIDIRLKPAVETLDELLSAGEA-GMYDFVFIDADKKNYETYYEKSLQLV 226

Query:   121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
             + GG++  DN LWGG V+ P + DL          + +LNK L  D RI++  +++ DG+
Sbjct:   227 RKGGIVAIDNVLWGGRVINPAEDDLSSQA------IDKLNKKLHKDERIDLSMLTVGDGL 280

Query:   181 TL 182
             TL
Sbjct:   281 TL 282

GO:0008171 "O-methyltransferase activity" evidence=IEA

UNIPROTKB|F1NI85 COMTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 79/182 (43%), Positives = 116/182 (63%)

Query:     1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
             MM S D+AQ  + L+KLI AK  +E+GV TGY+ L+ ALA+PD+G+++A DI +++ + G
Sbjct:    89 MMVSCDQAQLMANLIKLIKAKKVIEVGVLTGYNALSMALALPDNGRVIACDINEDYAKIG 148

Query:    61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
              P+ ++AGV HKID R  PA   LD+L+   +   TFDF F+DADK++Y  Y+++ + L+
Sbjct:   149 KPLWKEAGVDHKIDLRIKPATQTLDELLAGGEAE-TFDFAFIDADKESYNEYYEKCLRLI 207

Query:   121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
             K GG+I  DN L  G V+ P   DL    ++       LN+ L  D R+ I  I + DGV
Sbjct:   208 KKGGIIAIDNVLRCGMVLKPRKDDLATQSIH------HLNEKLVRDARVNISMIPMGDGV 261

Query:   181 TL 182
             TL
Sbjct:   262 TL 263

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

DICTYBASE|DDB_G0275501 omt6 "O-methyltransferase family 3 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 74/186 (39%), Positives = 118/186 (63%)

Query:     1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
             M+T  ++  FF +L++++NAK T++IGVFTG S L  ALA+ D+G+++A D++ E+ +  
Sbjct:    51 MLTQAEQCSFFKLLIQVLNAKKTIDIGVFTGLSSLTAALAMGDEGRVVACDVSTEYTQHA 110

Query:    61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
             L    KAGV HKI+ +  PA   L +LI D+    T+DFVF+DADK  Y  Y++  ++L+
Sbjct:   111 LKFWAKAGVDHKINLKIQPASKTLQELI-DQGEENTYDFVFIDADKTGYDTYYELSLKLI 169

Query:   121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
             + GG+I  DN L  G V A P+A+++ + + +R     LN  +  D R+    + IADG+
Sbjct:   170 RKGGIIAIDNVLQHGRV-ADPNANVEPNLVAIR----ALNDKILADKRVTKSLLPIADGI 224

Query:   181 TLCRRI 186
             TL  +I
Sbjct:   225 TLITKI 230

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0275499 omt5 "O-methyltransferase family 3 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 73/186 (39%), Positives = 118/186 (63%)

Query:     1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
             M+T  ++  FF +L++++NAK T++IGVFTG S L  ALA+ D+G+++A D++ ++ +  
Sbjct:    50 MLTQAEQCSFFKLLIQVLNAKKTIDIGVFTGLSSLTAALAMGDEGRVVACDVSTDYTQHA 109

Query:    61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
             L    KAGV HKI+ +  PA   L +LI D+    T+DFVF+DADK  Y  Y++  ++L+
Sbjct:   110 LKFWAKAGVDHKINLKIQPASKTLQELI-DQGEENTYDFVFIDADKTGYDTYYELSLKLI 168

Query:   121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
             + GG+I  DN L  G V A P+A+++ + + +R     LN  +  D R+    + IADG+
Sbjct:   169 RKGGIIAIDNVLQHGRV-ADPNANVEPNLVAIR----ALNDKILADKRVTKTMLPIADGI 223

Query:   181 TLCRRI 186
             TL  +I
Sbjct:   224 TLVTKI 229

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XGD6	CAMT1_MAIZE	2, ., 1, ., 1, ., 1, 0, 4	0.7150	0.9946	0.7209	N/A	no
Q9SWB8	CAMT2_EUCGL	2, ., 1, ., 1, ., 1, 0, 4	0.7754	1.0	0.7570	N/A	no
Q9SLP8	CAMT_CITNA	2, ., 1, ., 1, ., 1, 0, 4	0.7473	0.9946	0.8017	N/A	no
Q40313	CAMT_MEDSA	2, ., 1, ., 1, ., 1, 0, 4	0.7903	0.9946	0.7530	N/A	no
Q41720	CAMT_ZINEL	2, ., 1, ., 1, ., 1, 0, 4	0.7860	1.0	0.7632	N/A	no
P28034	CAMT_PETCR	2, ., 1, ., 1, ., 1, 0, 4	0.7688	0.9946	0.7717	N/A	no
O24149	CAMT2_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.7849	0.9946	0.7685	N/A	no
Q42945	CAMT6_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.7807	1.0	0.7570	N/A	no
O81185	CAMT1_EUCGL	2, ., 1, ., 1, ., 1, 0, 4	0.7914	0.9946	0.7560	N/A	no
O24144	CAMT1_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.7593	1.0	0.7824	N/A	no
Q43095	CAMT_POPTM	2, ., 1, ., 1, ., 1, 0, 4	0.7849	0.9946	0.7530	N/A	no
O65162	CAMT_MESCR	2, ., 1, ., 1, ., 1, 0, 4	0.7486	1.0	0.7362	N/A	no
O04854	CAMT_EUCGU	2, ., 1, ., 1, ., 1, 0, 4	0.7956	0.9893	0.7429	N/A	no
O04899	CAMT5_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.7795	0.9946	0.775	N/A	no
O49499	CAMT4_ARATH	2, ., 1, ., 1, ., 1, 0, 4	0.7486	1.0	0.7220	yes	no
Q9ZTT5	CAMT_PINTA	2, ., 1, ., 1, ., 1, 0, 4	0.7688	0.9946	0.7181	N/A	no
O65862	CAMT1_POPTR	2, ., 1, ., 1, ., 1, 0, 4	0.7795	0.9946	0.7530	yes	no
O24151	CAMT4_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.7593	1.0	0.7727	N/A	no
O24150	CAMT3_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.7688	0.9946	0.7685	N/A	no
Q8H9B6	CAMT_SOLTU	2, ., 1, ., 1, ., 1, 0, 4	0.7849	0.9946	0.7685	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.1.1.104	0.991
3rd Layer	2.1.1	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
PLN02589	247	PLN02589, PLN02589, caffeoyl-CoA O-methyltransfera	1e-118
pfam01596	204	pfam01596, Methyltransf_3, O-methyltransferase	1e-103
PLN02781	234	PLN02781, PLN02781, Probable caffeoyl-CoA O-methyl	1e-83
PLN02476	278	PLN02476, PLN02476, O-methyltransferase	2e-44
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	2e-40
pfam13578	105	pfam13578, Methyltransf_24, Methyltransferase doma	5e-08
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-05
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	0.002
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	0.004

>gnl|CDD|166230 PLN02589, PLN02589, caffeoyl-CoA O-methyltransferase

 Score =  334 bits (858), Expect = e-118
 Identities = 148/186 (79%), Positives = 168/186 (90%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF +MLLKLINAKNTMEIGV+TGYSLLATALA+P+DGKILA+DI +E+YE G
Sbjct: 61  MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELG 120

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP+IQKAGVAHKIDFREGPALP+LDQ+I+D KYHGTFDF+FVDADKDNY+NYHKRLI+LV
Sbjct: 121 LPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLV 180

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGGVIGYDNTLW GSVVAPPDA + ++  Y RDFV ELNKALA DPRIEIC + + DG+
Sbjct: 181 KVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGI 240

Query: 181 TLCRRI 186
           TLCRRI
Sbjct: 241 TLCRRI 246

Length = 247

>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase

 Score =  293 bits (753), Expect = e-103
 Identities = 116/186 (62%), Positives = 138/186 (74%), Gaps = 7/186 (3%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M  SP+E QF SMLLKLI AK T+EIGVFTGYSLLATALA+P+DGKI A DI  E YE G
Sbjct: 26  MQISPEEGQFLSMLLKLIGAKRTLEIGVFTGYSLLATALALPEDGKITACDIDPEAYEIG 85

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP IQKAGVA KI FR G ALP L++L++D+   G FDF+FVDADK NY NY++RL+ELV
Sbjct: 86  LPFIQKAGVADKISFRLGDALPTLEELVKDKPL-GEFDFIFVDADKSNYPNYYERLLELV 144

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGG+I  DNTLW G V   PD ++ +        V+ELNK LA D R+EI  + + DG+
Sbjct: 145 KVGGLIAIDNTLWFGKVAE-PDDEVPKT-----VRVRELNKLLASDERVEISMLPVGDGI 198

Query: 181 TLCRRI 186
           TLCRRI
Sbjct: 199 TLCRRI 204

Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production. Length = 204

>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase

 Score =  246 bits (630), Expect = 1e-83
 Identities = 111/186 (59%), Positives = 139/186 (74%), Gaps = 3/186 (1%)

Query: 2   MTSP-DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M  P DE  F SML+K++NAKNT+EIGVFTGYSLL TALA+P+DG+I A+DI KE YE G
Sbjct: 50  MEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVG 109

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           L  I+KAGV HKI+F +  AL  LDQL+ ++     FDF FVDADK NYV++H++L++LV
Sbjct: 110 LEFIKKAGVDHKINFIQSDALSALDQLLNNDP-KPEFDFAFVDADKPNYVHFHEQLLKLV 168

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGG+I +DNTLW G  VA  + ++ EH    R  + E NK LA DPR+EI QISI DGV
Sbjct: 169 KVGGIIAFDNTLWFG-FVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISIGDGV 227

Query: 181 TLCRRI 186
           TLCRR+
Sbjct: 228 TLCRRL 233

Length = 234

>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase

 Score =  148 bits (374), Expect = 2e-44
 Identities = 77/192 (40%), Positives = 116/192 (60%), Gaps = 21/192 (10%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILA-------LDIT 53
           M  SPD+AQ  +ML++++ A+  +E+GV+TGYS LA AL +P+ G ++A       L++ 
Sbjct: 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVA 159

Query: 54  KEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYH 113
           K +YE        AGV+HK++ + G A   L  +IQ+ +   ++DF FVDADK  Y +Y 
Sbjct: 160 KRYYE-------LAGVSHKVNVKHGLAAESLKSMIQNGE-GSSYDFAFVDADKRMYQDYF 211

Query: 114 KRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQ 173
           + L++LV+VGGVI  DN LW G V  P     D   + +R+F    NK L  D R+ I  
Sbjct: 212 ELLLQLVRVGGVIVMDNVLWHGRVADPLVN--DAKTISIRNF----NKKLMDDKRVSISM 265

Query: 174 ISIADGVTLCRR 185
           + I DG+T+CR+
Sbjct: 266 VPIGDGMTICRK 277

Length = 278

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score =  135 bits (343), Expect = 2e-40
 Identities = 64/183 (34%), Positives = 94/183 (51%), Gaps = 8/183 (4%)

Query: 5   PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPII 64
           P+      +L +L   K  +EIG   GYS L  ALA+PDDG++  ++  +E  E     +
Sbjct: 45  PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENL 104

Query: 65  QKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGG 124
            +AGV  +I+   G     LD L       G+FD VF+DADK +Y  Y +R + L++ GG
Sbjct: 105 AEAGVDDRIELLLG--GDALDVL--SRLLDGSFDLVFIDADKADYPEYLERALPLLRPGG 160

Query: 125 VIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVTLCR 184
           +I  DN L+GG V  P   D       +RDF   L +    DPR +   + + DG+ L R
Sbjct: 161 LIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLE----DPRYDTVLLPLGDGLLLSR 216

Query: 185 RIG 187
           + G
Sbjct: 217 KRG 219

Length = 219

>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain

 Score = 48.4 bits (116), Expect = 5e-08
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 19/116 (16%)

Query: 24  MEIGVFTGYSLLATALAIPD--DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL 81
           +EIGV++G S L  A A+ D   G++ ++D            ++KAG+A ++    G +L
Sbjct: 1   VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPGAEAG--ANLRKAGLADRVRLLRGDSL 58

Query: 82  PLLDQLIQDEKYHGTFDFVFVDADKDN------YVNYHKRLIELVKVGGVIGYDNT 131
             L +L       G+ D +F+D D            +   L      GG+I + + 
Sbjct: 59  EALARLPD-----GSIDLLFIDGDHTYEAVLADLELWLPLL----APGGIIVFHDI 105

This family appears to be a methyltransferase domain. Length = 105

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 15/105 (14%)

Query: 25  EIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK---AGVAHKIDFREGPAL 81
           +IG  TG   +  A   P   ++  +D+      + L + ++     +  +I F +G A 
Sbjct: 7   DIGCGTGSLAIELARLFPG-ARVTGVDL----SPEMLELARENAKLALGPRITFVQGDAP 61

Query: 82  PLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVI 126
             LD L         FD VF+     + +     L  L+K GG +
Sbjct: 62  DALDLL-------EGFDAVFIGGGGGDLLELLDALASLLKPGGRL 99

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 11/103 (10%)

Query: 28  VFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL 87
           +  G   LA ALA     ++  +DI+    E        A +A  ++  +G A  L  + 
Sbjct: 5   LGCGTGALALALASGPGARVTGVDISPVALEL-ARKAAAALLADNVEVLKGDAEELPPEA 63

Query: 88  IQDEKYHGTFDFVFVD----ADKDNYVNYHKRLIELVKVGGVI 126
                   +FD +  D       ++   + +    L+K GGV+
Sbjct: 64  D------ESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVL 100

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 49  ALDITKEHY----------EKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98
           A+ + K HY           +   + +K G  H ID+     + LL  ++++ K  G FD
Sbjct: 168 AIQLAKNHYNIGTVVGTCSSRSAELNKKLGADHFIDYDAHSGVKLLKPVLENVKGQGKFD 227

Query: 99  FVF 101
            + 
Sbjct: 228 LIL 230

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	100.0
PLN02589	247	caffeoyl-CoA O-methyltransferase	100.0
PLN02476	278	O-methyltransferase	100.0
COG4122	219	Predicted O-methyltransferase [General function pr	100.0
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	100.0
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	100.0
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.81
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.79
PRK04457	262	spermidine synthase; Provisional	99.77
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.76
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.76
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.74
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.73
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.72
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.72
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.71
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.71
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.71
PLN03075	296	nicotianamine synthase; Provisional	99.71
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.71
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.7
PRK00811	283	spermidine synthase; Provisional	99.7
PRK07402	196	precorrin-6B methylase; Provisional	99.7
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.7
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.68
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.68
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.68
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.68
PRK01581	374	speE spermidine synthase; Validated	99.67
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.67
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.66
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.66
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.66
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.65
COG4123	248	Predicted O-methyltransferase [General function pr	99.65
PLN02366	308	spermidine synthase	99.65
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.65
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.65
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	99.64
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.64
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.63
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.63
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.63
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.63
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.63
PLN02244	340	tocopherol O-methyltransferase	99.62
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.62
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.62
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.61
PRK11207	197	tellurite resistance protein TehB; Provisional	99.61
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.61
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.61
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.61
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.61
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.6
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.6
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	99.6
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.6
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.6
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.59
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.59
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.59
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.59
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.59
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.59
PLN02823	336	spermine synthase	99.58
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.58
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.58
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.58
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.58
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.57
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.57
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.57
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.57
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.57
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.57
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.56
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.56
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.56
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	99.56
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.55
PRK04266	226	fibrillarin; Provisional	99.55
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.54
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.53
PRK12335	287	tellurite resistance protein TehB; Provisional	99.53
PRK08317	241	hypothetical protein; Provisional	99.53
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.53
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.52
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.52
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.52
COG2890	280	HemK Methylase of polypeptide chain release factor	99.52
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.51
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.51
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.51
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	99.51
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.51
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.51
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.51
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.5
PRK14968	188	putative methyltransferase; Provisional	99.5
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.5
PRK14967	223	putative methyltransferase; Provisional	99.5
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.5
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.49
PRK06922	677	hypothetical protein; Provisional	99.49
PLN02336	475	phosphoethanolamine N-methyltransferase	99.48
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.48
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.48
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	99.48
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.48
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.47
PRK03612	521	spermidine synthase; Provisional	99.47
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.47
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.46
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.46
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.45
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.45
PRK00536	262	speE spermidine synthase; Provisional	99.45
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.45
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.45
PTZ00146	293	fibrillarin; Provisional	99.44
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.43
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.42
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.42
TIGR03438	301	probable methyltransferase. This model represents	99.41
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.41
PLN02490	340	MPBQ/MSBQ methyltransferase	99.41
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.41
KOG4300	252	consensus Predicted methyltransferase [General fun	99.41
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.4
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.39
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.39
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.39
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.38
KOG2904	328	consensus Predicted methyltransferase [General fun	99.38
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.37
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.36
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.36
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.35
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.34
PLN02336	475	phosphoethanolamine N-methyltransferase	99.34
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.33
KOG1271	227	consensus Methyltransferases [General function pre	99.33
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.32
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.32
PLN02672	1082	methionine S-methyltransferase	99.31
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.31
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.3
PHA03412	241	putative methyltransferase; Provisional	99.29
TIGR00438	188	rrmJ cell division protein FtsJ.	99.29
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.29
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.28
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.27
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.27
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.26
PRK06202	232	hypothetical protein; Provisional	99.25
COG2521	287	Predicted archaeal methyltransferase [General func	99.24
PRK05785	226	hypothetical protein; Provisional	99.24
PHA03411	279	putative methyltransferase; Provisional	99.22
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.22
KOG2899	288	consensus Predicted methyltransferase [General fun	99.22
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.19
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	99.17
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.17
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.17
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.17
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.14
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.14
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	99.13
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.13
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.12
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.12
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.12
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.11
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.11
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.1
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.06
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	99.06
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.05
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	99.04
COG2520	341	Predicted methyltransferase [General function pred	99.04
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	99.04
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.04
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.03
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.02
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.01
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.01
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.01
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.0
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.0
KOG2361	264	consensus Predicted methyltransferase [General fun	98.99
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.98
KOG3010	261	consensus Methyltransferase [General function pred	98.96
KOG2730	263	consensus Methylase [General function prediction o	98.95
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.95
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.91
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.91
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.88
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.87
PRK04148	134	hypothetical protein; Provisional	98.86
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.85
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.81
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.81
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.8
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	98.79
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.78
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.75
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.75
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	98.73
PRK10742	250	putative methyltransferase; Provisional	98.73
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.72
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.68
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.67
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.67
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	98.65
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.65
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.61
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.57
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.57
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.55
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.55
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.52
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.52
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.51
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.51
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.49
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.48
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.46
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.44
COG4076	252	Predicted RNA methylase [General function predicti	98.43
PF13679	141	Methyltransf_32: Methyltransferase domain	98.43
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.41
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.39
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.38
KOG3115	249	consensus Methyltransferase-like protein [General	98.38
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.35
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.32
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.3
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.29
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.29
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.23
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	98.22
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.21
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.21
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.19
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.13
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.06
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.04
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	98.02
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.02
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.91
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.88
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.85
PHA01634	156	hypothetical protein	97.84
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.83
COG3897	218	Predicted methyltransferase [General function pred	97.83
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.77
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.72
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.71
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.7
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.68
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.67
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	97.65
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.62
KOG2940	325	consensus Predicted methyltransferase [General fun	97.58
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.52
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.46
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.45
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.3
COG4798	238	Predicted methyltransferase [General function pred	97.28
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.28
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.25
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.25
COG4301	321	Uncharacterized conserved protein [Function unknow	97.24
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.19
KOG1227	351	consensus Putative methyltransferase [General func	97.15
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	97.07
COG0286	489	HsdM Type I restriction-modification system methyl	97.07
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.05
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.05
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.0
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	96.87
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.8
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.76
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.66
PRK13699	227	putative methylase; Provisional	96.65
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.63
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.51
PRK11524	284	putative methyltransferase; Provisional	96.51
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.49
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	96.43
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.43
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.37
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	96.29
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.25
COG2961	279	ComJ Protein involved in catabolism of external DN	96.2
COG1568	354	Predicted methyltransferases [General function pre	96.17
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	96.06
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.03
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	96.01
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.98
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	95.96
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	95.82
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	95.8
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.79
COG1565	370	Uncharacterized conserved protein [Function unknow	95.66
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	95.65
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	95.64
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	95.62
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.42
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.41
PRK11524	284	putative methyltransferase; Provisional	95.4
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	95.37
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	95.33
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	95.31
KOG2078	495	consensus tRNA modification enzyme [RNA processing	95.2
KOG1331	293	consensus Predicted methyltransferase [General fun	95.06
PRK08114	395	cystathionine beta-lyase; Provisional	95.05
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.01
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.96
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	94.95
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	94.94
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	94.89
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	94.79
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	94.78
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.72
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	94.7
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	94.7
PLN02740	381	Alcohol dehydrogenase-like	94.67
PRK13699	227	putative methylase; Provisional	94.67
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	94.65
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.46
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.46
KOG2912	419	consensus Predicted DNA methylase [Function unknow	94.46
COG1255	129	Uncharacterized protein conserved in archaea [Func	94.43
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	94.35
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	94.35
PRK09028	394	cystathionine beta-lyase; Provisional	94.34
PLN02827	378	Alcohol dehydrogenase-like	94.26
KOG2352	482	consensus Predicted spermine/spermidine synthase [	94.26
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	93.98
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.82
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	93.78
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	93.74
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.73
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.72
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	93.63
PRK05967	395	cystathionine beta-lyase; Provisional	93.63
PRK05939	397	hypothetical protein; Provisional	93.58
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	93.55
COG3315	297	O-Methyltransferase involved in polyketide biosynt	93.52
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.42
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	93.41
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.4
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	93.24
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	93.21
PRK06234	400	methionine gamma-lyase; Provisional	93.16
COG4017	254	Uncharacterized protein conserved in archaea [Func	93.16
PRK06940	275	short chain dehydrogenase; Provisional	93.14
PRK08045	386	cystathionine gamma-synthase; Provisional	93.04
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	93.01
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	93.01
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.0
PRK08064	390	cystathionine beta-lyase; Provisional	92.99
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	92.97
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.93
KOG3924	419	consensus Putative protein methyltransferase invol	92.88
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	92.82
PLN02586	360	probable cinnamyl alcohol dehydrogenase	92.77
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	92.71
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	92.7
PRK08574	385	cystathionine gamma-synthase; Provisional	92.7
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	92.66
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	92.62
KOG2360	413	consensus Proliferation-associated nucleolar prote	92.6
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	92.59
PRK05225	487	ketol-acid reductoisomerase; Validated	92.56
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	92.5
PLN02494	477	adenosylhomocysteinase	92.4
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	92.39
PRK07671	377	cystathionine beta-lyase; Provisional	92.39
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	92.38
PF00072	112	Response_reg: Response regulator receiver domain;	92.31
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	92.28
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	92.21
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	92.12
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	92.08
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	92.02
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	91.97
PRK09496	453	trkA potassium transporter peripheral membrane com	91.94
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	91.92
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	91.92
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	91.9
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	91.86
PTZ00357	1072	methyltransferase; Provisional	91.83
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	91.79
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	91.77
PRK07811	388	cystathionine gamma-synthase; Provisional	91.71
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	91.64
PRK10669	558	putative cation:proton antiport protein; Provision	91.5
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	91.39
PRK08247	366	cystathionine gamma-synthase; Reviewed	91.31
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	91.29
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	91.19
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	91.17
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	91.16
PRK03659	601	glutathione-regulated potassium-efflux system prot	91.1
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	91.09
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	91.08
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	91.06
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	91.0
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	90.99
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	90.93
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	90.86
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	90.85
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	90.81
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	90.8
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	90.78
PLN02256	304	arogenate dehydrogenase	90.62
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	90.57
PRK08861	388	cystathionine gamma-synthase; Provisional	90.54
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	90.53
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	90.51
PRK07582	366	cystathionine gamma-lyase; Validated	90.46
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	90.2
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	90.19
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	90.16
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	90.11
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.07
PRK07417	279	arogenate dehydrogenase; Reviewed	90.02
PRK06460	376	hypothetical protein; Provisional	89.97
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	89.85
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	89.82
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	89.8
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	89.77
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	89.7
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	89.69
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	89.66
PRK08324	681	short chain dehydrogenase; Validated	89.61
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	89.57
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	89.47
PRK05599	246	hypothetical protein; Provisional	89.35
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	89.34
PRK09496	453	trkA potassium transporter peripheral membrane com	89.31
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	89.28
PRK03562	621	glutathione-regulated potassium-efflux system prot	89.21
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	89.16
PRK08249	398	cystathionine gamma-synthase; Provisional	89.11
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	88.92
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	88.89
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	88.87
PF06690	252	DUF1188: Protein of unknown function (DUF1188); In	88.8
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	88.76
PLN02514	357	cinnamyl-alcohol dehydrogenase	88.69
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	88.68
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.64
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	88.59
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	88.58
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	88.56
PRK08306	296	dipicolinate synthase subunit A; Reviewed	88.5
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	88.46
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	88.35
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	88.33
PRK08507	275	prephenate dehydrogenase; Validated	88.26
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	88.17
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	88.17
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	88.02
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.99
COG2933	358	Predicted SAM-dependent methyltransferase [General	87.96
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	87.93
PTZ00075	476	Adenosylhomocysteinase; Provisional	87.9
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	87.9
PRK07503	403	methionine gamma-lyase; Provisional	87.9
PLN02427	386	UDP-apiose/xylose synthase	87.88
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.88
PRK07063	260	short chain dehydrogenase; Provisional	87.85
PRK07050	394	cystathionine beta-lyase; Provisional	87.82
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.74
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	87.63
PLN02353	473	probable UDP-glucose 6-dehydrogenase	87.62
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	87.56
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.54
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	87.45
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	87.43
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	87.43
PF03269	177	DUF268: Caenorhabditis protein of unknown function	87.42
PLN03209	576	translocon at the inner envelope of chloroplast su	87.32
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	87.32
PRK07049	427	methionine gamma-lyase; Validated	87.29
PRK08655	437	prephenate dehydrogenase; Provisional	87.21
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	87.08
PRK10083	339	putative oxidoreductase; Provisional	87.05
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	87.04
PRK07680	273	late competence protein ComER; Validated	87.01
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	86.97
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	86.78
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	86.76
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	86.67
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	86.64
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	86.5

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=100.00  E-value=3.9e-40  Score=243.00  Aligned_cols=179  Identities=44%  Similarity=0.729  Sum_probs=161.1

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |+++++++++|..|++..+|++||||||++|++++++++++|++++++++|.+++..+.|+++++..|+.++++++.+|+
T Consensus        27 ~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda  106 (205)
T PF01596_consen   27 MSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA  106 (205)
T ss_dssp             GSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred             CccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence            57899999999999999999999999999999999999999888999999999999999999999999989999999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN  160 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .++++.+.+... .++||+||+|+++..|..+|+.+.++|++||+|++||++|.|.+..+....      .....+++|+
T Consensus       107 ~~~l~~l~~~~~-~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~------~~~~~ir~f~  179 (205)
T PF01596_consen  107 LEVLPELANDGE-EGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDED------PKTVAIREFN  179 (205)
T ss_dssp             HHHHHHHHHTTT-TTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGS------HHHHHHHHHH
T ss_pred             HhhHHHHHhccC-CCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchh------hhHHHHHHHH
Confidence            999998865421 258999999999999999999999999999999999999999998885432      3344599999


Q ss_pred             HHHhcCCCeeEEEeecCCeeEEEEEc
Q 029836          161 KALAVDPRIEICQISIADGVTLCRRI  186 (187)
Q Consensus       161 ~~~~~~~~~~~~~~p~~~G~~i~~k~  186 (187)
                      +.+.++|+++++++|+|+|+.+++||
T Consensus       180 ~~i~~d~~~~~~llpigdGl~l~~K~  205 (205)
T PF01596_consen  180 EYIANDPRFETVLLPIGDGLTLARKR  205 (205)
T ss_dssp             HHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred             HHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence            99999999999999999999999996

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=7.9e-39  Score=241.71  Aligned_cols=187  Identities=79%  Similarity=1.290  Sum_probs=168.0

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |+++++++++|..+++..++++|||||+++|+++++++..++++++++++|.+++..+.|+++++..|+.++++++.|++
T Consensus        61 ~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a  140 (247)
T PLN02589         61 MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA  140 (247)
T ss_pred             CccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccH
Confidence            67899999999999999999999999999999999999999878999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN  160 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+.+.+...++||+||+|+++..|..+|+.+.++|++||+|++||++|.|.+.++.......+.+.....+++|+
T Consensus       141 ~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn  220 (247)
T PLN02589        141 LPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELN  220 (247)
T ss_pred             HHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHH
Confidence            99999875432113689999999999999999999999999999999999999999888754332333344556789999


Q ss_pred             HHHhcCCCeeEEEeecCCeeEEEEEcC
Q 029836          161 KALAVDPRIEICQISIADGVTLCRRIG  187 (187)
Q Consensus       161 ~~~~~~~~~~~~~~p~~~G~~i~~k~~  187 (187)
                      +.+..++++..+++|+|+|+.+++|++
T Consensus       221 ~~v~~d~~~~~~llPigDGl~l~~k~~  247 (247)
T PLN02589        221 KALAADPRIEICMLPVGDGITLCRRIS  247 (247)
T ss_pred             HHHHhCCCEEEEEEEeCCccEEEEEeC
Confidence            999999999999999999999999975

>PLN02476 O-methyltransferase

Probab=100.00  E-value=3.2e-37  Score=235.57  Aligned_cols=179  Identities=40%  Similarity=0.691  Sum_probs=163.8

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |++++++++++..++...++++||||||++|+++++++..++++++++++|.+++.++.|++++++.|+.++++++.||+
T Consensus       100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA  179 (278)
T PLN02476        100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA  179 (278)
T ss_pred             cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            67899999999999999999999999999999999999998877899999999999999999999999988999999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN  160 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+..++ ..++||+||+|+++..|..+++.+.++|++||+|++||++|.|.+.++...+      .....+++|+
T Consensus       180 ~e~L~~l~~~~-~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d------~~t~~ir~fn  252 (278)
T PLN02476        180 AESLKSMIQNG-EGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVND------AKTISIRNFN  252 (278)
T ss_pred             HHHHHHHHhcc-cCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCC------HHHHHHHHHH
Confidence            99998764322 1358999999999999999999999999999999999999999998876533      1245899999


Q ss_pred             HHHhcCCCeeEEEeecCCeeEEEEEc
Q 029836          161 KALAVDPRIEICQISIADGVTLCRRI  186 (187)
Q Consensus       161 ~~~~~~~~~~~~~~p~~~G~~i~~k~  186 (187)
                      +.+.++++++.+++|+|+|+.+++|+
T Consensus       253 ~~v~~d~~~~~~llPigDGl~i~~K~  278 (278)
T PLN02476        253 KKLMDDKRVSISMVPIGDGMTICRKR  278 (278)
T ss_pred             HHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence            99999999999999999999999986

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=100.00  E-value=1.2e-36  Score=224.30  Aligned_cols=174  Identities=36%  Similarity=0.627  Sum_probs=161.7

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe-CCchHH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE-GPALPL   83 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~   83 (187)
                      |+++++|..|+...++++|||||++.|+|++|++..+|.+++++++|.++++.+.|++|+++.|..++++++. +|+.+.
T Consensus        45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~  124 (219)
T COG4122          45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV  124 (219)
T ss_pred             hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence            8999999999999999999999999999999999999877999999999999999999999999999999999 699998


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHHH
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKAL  163 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (187)
                      +....     .++||+||+|+++..|+.+|+.+.++|+|||++++||++|+|.+..+..    +..+.....+++|++.+
T Consensus       125 l~~~~-----~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~----~~~~~~~~~~~~~~~~~  195 (219)
T COG4122         125 LSRLL-----DGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSI----RDARTQVRGVRDFNDYL  195 (219)
T ss_pred             HHhcc-----CCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccc----hhHHHHHHHHHHHHHHH
Confidence            88632     6899999999999999999999999999999999999999999877754    33456777899999999


Q ss_pred             hcCCCeeEEEeecCCeeEEEEEcC
Q 029836          164 AVDPRIEICQISIADGVTLCRRIG  187 (187)
Q Consensus       164 ~~~~~~~~~~~p~~~G~~i~~k~~  187 (187)
                      .++|++..+++|+|+|+.+++|++
T Consensus       196 ~~~~~~~t~~lP~gDGl~v~~k~~  219 (219)
T COG4122         196 LEDPRYDTVLLPLGDGLLLSRKRG  219 (219)
T ss_pred             hhCcCceeEEEecCCceEEEeecC
Confidence            999999999999999999999975

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=6.1e-36  Score=225.96  Aligned_cols=184  Identities=60%  Similarity=0.956  Sum_probs=165.8

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |+++++++++|+.++...++++|||+|||+|+++++++..++++++++++|+++++++.|+++++++++.++++++++|+
T Consensus        50 ~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda  129 (234)
T PLN02781         50 MEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA  129 (234)
T ss_pred             cccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH
Confidence            67899999999999999999999999999999999999988777899999999999999999999999988999999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN  160 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+.++. ..++||+||+|+.+..|..+++.+.++|+|||+++++|++|.|.+.++... .+++.+.....+++|+
T Consensus       130 ~~~L~~l~~~~-~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~-~~~~~~~~~~~ir~~~  207 (234)
T PLN02781        130 LSALDQLLNND-PKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDE-VPEHMRAYRKALLEFN  207 (234)
T ss_pred             HHHHHHHHhCC-CCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccc-cchhhhHHHHHHHHHH
Confidence            99888764321 035899999999999999999999999999999999999999998887542 2334455678899999


Q ss_pred             HHHhcCCCeeEEEeecCCeeEEEEEc
Q 029836          161 KALAVDPRIEICQISIADGVTLCRRI  186 (187)
Q Consensus       161 ~~~~~~~~~~~~~~p~~~G~~i~~k~  186 (187)
                      +.+..+|++.++++|+|+|+.+++|+
T Consensus       208 ~~i~~~~~~~~~~lp~gdG~~i~~k~  233 (234)
T PLN02781        208 KLLASDPRVEISQISIGDGVTLCRRL  233 (234)
T ss_pred             HHHhhCCCeEEEEEEeCCccEEEEEe
Confidence            99999999999999999999999985

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=5.1e-35  Score=213.36  Aligned_cols=180  Identities=53%  Similarity=0.919  Sum_probs=164.9

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |+++|++++|++.+++..+++++||||+++|+|++.+|.++|++++|+++|+++...+.+.+..+..|...+++++++++
T Consensus        55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a  134 (237)
T KOG1663|consen   55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA  134 (237)
T ss_pred             eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHH---
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQ---  157 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  157 (187)
                      .+.+.++.+.+ +.++||++|+|+++..|..+++++.+++|+||+|++||++|.|.+..|+...     ......++   
T Consensus       135 ~esLd~l~~~~-~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~-----~~~~~~~r~~~  208 (237)
T KOG1663|consen  135 LESLDELLADG-ESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNT-----PVRGRSIREAL  208 (237)
T ss_pred             hhhHHHHHhcC-CCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCC-----Ccchhhhhhhh
Confidence            99999887765 3679999999999999999999999999999999999999999776665432     11234455   


Q ss_pred             HHHHHHhcCCCeeEEEeecCCeeEEEEEc
Q 029836          158 ELNKALAVDPRIEICQISIADGVTLCRRI  186 (187)
Q Consensus       158 ~~~~~~~~~~~~~~~~~p~~~G~~i~~k~  186 (187)
                      ++++.+..+|+++.+.+|+|+|+++++|+
T Consensus       209 ~~n~~l~~D~rV~~s~~~igdG~~i~~k~  237 (237)
T KOG1663|consen  209 NLNKKLARDPRVYISLLPIGDGITICRKR  237 (237)
T ss_pred             hhhhHhccCcceeeEeeeccCceeeeccC
Confidence            99999999999999999999999999985

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.81  E-value=4.2e-19  Score=119.47  Aligned_cols=104  Identities=23%  Similarity=0.367  Sum_probs=87.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+.++++..+ +.+++++|+++++++.+++++...+..++++++++|+ ......      .++||
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D   72 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFD   72 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCC
Confidence            467999999999999999998545 7899999999999999999998888889999999999 433332      56899


Q ss_pred             EEEEcC-CC------cccHHHHHHHHhcccCCeEEEEeC
Q 029836           99 FVFVDA-DK------DNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        99 ~v~~d~-~~------~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|++.. ..      +....+++.+.+.|+|||+++++.
T Consensus        73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            999988 32      233567999999999999999864

...

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.79  E-value=1.4e-17  Score=119.27  Aligned_cols=120  Identities=23%  Similarity=0.246  Sum_probs=104.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +.++...+.-..+...+..+++|||||+|..+++++...| .++++++|-++++++..++|.++++. +|++++.|++.+
T Consensus        18 TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~   95 (187)
T COG2242          18 TKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPE   95 (187)
T ss_pred             cHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchH
Confidence            3455555555556677888999999999999999995544 89999999999999999999999995 899999999998


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .++.+       .++|.||+.+. ......++.++..||+||.||++-+.
T Consensus        96 ~L~~~-------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242          96 ALPDL-------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             hhcCC-------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence            88754       37999999998 88999999999999999999987554

>PRK04457 spermidine synthase; Provisional

Probab=99.77  E-value=7.2e-17  Score=124.03  Aligned_cols=113  Identities=12%  Similarity=0.140  Sum_probs=94.7

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh
Q 029836           10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ   89 (187)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~   89 (187)
                      ++..+....++++|||||||.|.++.++++..| ..+++++|+++++++.|++++...+..++++++.+|+.++++..  
T Consensus        57 m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~--  133 (262)
T PRK04457         57 MMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH--  133 (262)
T ss_pred             HHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC--
Confidence            334444455789999999999999999998876 78999999999999999999876555578999999999888754  


Q ss_pred             cccCCCceeEEEEcCCCc-------ccHHHHHHHHhcccCCeEEEEe
Q 029836           90 DEKYHGTFDFVFVDADKD-------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                          .++||+|++|....       ...++++.+.+.|+|||+++++
T Consensus       134 ----~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        134 ----RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             ----CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence                56899999997521       2378999999999999999985

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.76  E-value=2.4e-17  Score=112.62  Aligned_cols=116  Identities=20%  Similarity=0.220  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      +....+...+...+.+++||+|||.|..+..+++..+ ..+++++|+++.+++.++++++..+. .+++++.+|+...++
T Consensus         6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~   83 (124)
T TIGR02469         6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALE   83 (124)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccCh
Confidence            3344344444445567999999999999999999876 58999999999999999999998877 478999988765433


Q ss_pred             HHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           86 QLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..      .++||.|+++........+++.+.+.|+|||.++++
T Consensus        84 ~~------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        84 DS------LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             hh------cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence            32      468999999876666778999999999999999975

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.76  E-value=4.3e-17  Score=120.56  Aligned_cols=111  Identities=24%  Similarity=0.349  Sum_probs=95.1

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      +...+..+|||+|||+|..++.++...++..+|+++|+++.+++.++++++.+++.++++++.+|..+.++..      .
T Consensus        36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------~  109 (198)
T PRK00377         36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------N  109 (198)
T ss_pred             cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------C
Confidence            3455678999999999999999988765568999999999999999999999986678999999998766654      4


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ++||.||+.........+++.+.+.|+|||.++++..
T Consensus       110 ~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        110 EKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             CCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence            6899999977666778899999999999999997543

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.74  E-value=3.6e-16  Score=114.64  Aligned_cols=115  Identities=21%  Similarity=0.226  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      ....++-..+...++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++..++ .+++++.+|....  
T Consensus        18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~--   93 (187)
T PRK08287         18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIE--   93 (187)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhh--
Confidence            3344444444556778999999999999999998765 68999999999999999999998887 5799999887422  


Q ss_pred             HHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           86 QLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                       +      .++||+|+++.....+..+++.+.+.|+|||+++++..
T Consensus        94 -~------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287         94 -L------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             -c------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence             1      35799999987666678889999999999999998653

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.73  E-value=7.4e-17  Score=117.48  Aligned_cols=103  Identities=19%  Similarity=0.282  Sum_probs=87.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++.+|||+|||+|.++..++...+ +++|+++|+++.+++.++++.++.++ ++++++++|+.+...        .+
T Consensus        39 ~~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~~--------~~  108 (181)
T TIGR00138        39 EYLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQH--------EE  108 (181)
T ss_pred             HhcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhccc--------cC
Confidence            344688999999999999999987654 68999999999999999999999887 479999999976421        46


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +||+|++++ ...+..+++.+.++|+|||.+++.
T Consensus       109 ~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       109 QFDVITSRA-LASLNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             CccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence            899999987 456778889999999999999964

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.72  E-value=1e-16  Score=119.69  Aligned_cols=116  Identities=23%  Similarity=0.356  Sum_probs=94.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +.|.....+-.++...++.+|||||||+|+.+..+++..++.++|+++|+++++++.++++++..+. .+++++++|+..
T Consensus        60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~  138 (212)
T PRK13942         60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTL  138 (212)
T ss_pred             CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCccc
Confidence            4566666666666777889999999999999999998876568999999999999999999999887 689999999875


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++.       .++||+|+++......+   +.+.+.|+|||.+++.
T Consensus       139 ~~~~-------~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        139 GYEE-------NAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIP  175 (212)
T ss_pred             CCCc-------CCCcCEEEECCCcccch---HHHHHhhCCCcEEEEE
Confidence            4432       46899999987644443   3566789999999873

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.72  E-value=1.1e-16  Score=118.95  Aligned_cols=113  Identities=24%  Similarity=0.325  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      ....+..++...+..+|||+|||+|+.+..+++.+++.++|+++|+++++++.++++++..+...+++++++|+.+.++.
T Consensus        60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~  139 (205)
T PRK13944         60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK  139 (205)
T ss_pred             HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence            33334344444566899999999999999999887656899999999999999999999988867899999998765442


Q ss_pred             HhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           87 LIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                             ..+||.|+++......+   +.+.+.|+|||.+++.
T Consensus       140 -------~~~fD~Ii~~~~~~~~~---~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        140 -------HAPFDAIIVTAAASTIP---SALVRQLKDGGVLVIP  172 (205)
T ss_pred             -------CCCccEEEEccCcchhh---HHHHHhcCcCcEEEEE
Confidence                   46899999987644333   5677899999999874

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.71  E-value=8.4e-17  Score=121.47  Aligned_cols=113  Identities=20%  Similarity=0.244  Sum_probs=83.3

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhccc
Q 029836           13 MLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      .++...++.+|||+|||+|.++..+++..++.++|+++|+++.+++.|++.++..+. .+++++++|+++. |--     
T Consensus        41 ~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-~~i~~v~~da~~l-p~~-----  113 (233)
T PF01209_consen   41 KLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-QNIEFVQGDAEDL-PFP-----  113 (233)
T ss_dssp             HHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S------
T ss_pred             hccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-CCeeEEEcCHHHh-cCC-----
Confidence            334556778999999999999999998877678999999999999999999998877 4999999999764 311     


Q ss_pred             CCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           93 YHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        93 ~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                       +++||.|++.-.   -.+....++++.+.|||||.+++-+...
T Consensus       114 -d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~  156 (233)
T PF01209_consen  114 -DNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK  156 (233)
T ss_dssp             -TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             -CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence             679999998754   4567889999999999999998876643

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.71  E-value=1.5e-16  Score=112.88  Aligned_cols=108  Identities=24%  Similarity=0.355  Sum_probs=90.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+..+|||+|||+|..+..++..+.++.+++++|+++++++.|++.++..+.. +++|.++|..+ ++...     .++|
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~-----~~~~   74 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL-----EEKF   74 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS-----STTE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc-----CCCe
Confidence            35789999999999999999965555789999999999999999999999985 99999999987 44310     2689


Q ss_pred             eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |+|+....   ..+....++.+.++|++||.+++.+..
T Consensus        75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            99999865   344567899999999999999987765

...

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.71  E-value=2.1e-16  Score=118.37  Aligned_cols=115  Identities=23%  Similarity=0.345  Sum_probs=92.7

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .|.....+..++...++.+|||||||+|+.+..+++..+.+++|+++|+++++++.|+++++..++ ++++++++|+.+.
T Consensus        62 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~  140 (215)
T TIGR00080        62 APHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQG  140 (215)
T ss_pred             hHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccC
Confidence            344445555556667788999999999999999998866567899999999999999999999988 6899999998764


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++.       ..+||+|++++......   +.+.+.|+|||++++.
T Consensus       141 ~~~-------~~~fD~Ii~~~~~~~~~---~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       141 WEP-------LAPYDRIYVTAAGPKIP---EALIDQLKEGGILVMP  176 (215)
T ss_pred             Ccc-------cCCCCEEEEcCCccccc---HHHHHhcCcCcEEEEE
Confidence            432       35899999987654443   4567889999999873

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.71  E-value=1.9e-16  Score=122.16  Aligned_cols=119  Identities=13%  Similarity=0.141  Sum_probs=95.9

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHH-cCCCCceEEEeCCch
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTG-YSLLATALAIPDDGKILALDITKEHYEKGLPIIQK-AGVAHKIDFREGPAL   81 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G-~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~   81 (187)
                      .+-..++++.+... ++++|+|||||.| .+++.++....++++++++|+++++++.|++.++. .++.++++|..+|+.
T Consensus       109 ~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~  187 (296)
T PLN03075        109 SKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM  187 (296)
T ss_pred             HHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh
Confidence            34556667666655 8999999999955 45566665444479999999999999999999965 788889999999998


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC----CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD----KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~----~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +..+.       .+.||+||++.-    ++.....++.+.+.|+|||++++-.
T Consensus       188 ~~~~~-------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        188 DVTES-------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             hcccc-------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            75322       368999999852    5788999999999999999999754

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.71  E-value=4.5e-16  Score=113.73  Aligned_cols=100  Identities=18%  Similarity=0.217  Sum_probs=86.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..++...+ +++|+++|+++++++.|+++.+..+.. +++++++|+.+...        .++||
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~--------~~~fD  114 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ--------EEKFD  114 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC--------CCCcc
Confidence            478999999999999999998765 689999999999999999999999884 59999999976422        35899


Q ss_pred             EEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           99 FVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|++... ..+..+++.+.+.|+|||.+++-
T Consensus       115 lV~~~~~-~~~~~~l~~~~~~LkpGG~lv~~  144 (187)
T PRK00107        115 VVTSRAV-ASLSDLVELCLPLLKPGGRFLAL  144 (187)
T ss_pred             EEEEccc-cCHHHHHHHHHHhcCCCeEEEEE
Confidence            9999763 45778999999999999999875

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.70  E-value=3.4e-16  Score=117.48  Aligned_cols=107  Identities=21%  Similarity=0.274  Sum_probs=93.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|-++..+++..+ .++|+++|+++.|++.+++.....+... ++++++|+++. | +.     +++||
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-P-f~-----D~sFD  121 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-P-FP-----DNSFD  121 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-C-CC-----CCccC
Confidence            689999999999999999999987 7999999999999999999999888754 99999999764 3 22     68999


Q ss_pred             EEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           99 FVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        99 ~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      +|.+.-.   -.+....++++.|.|||||.+++.+....
T Consensus       122 ~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p  160 (238)
T COG2226         122 AVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP  160 (238)
T ss_pred             EEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence            9998754   56789999999999999999998776543

>PRK00811 spermidine synthase; Provisional

Probab=99.70  E-value=1.2e-15  Score=118.55  Aligned_cols=106  Identities=17%  Similarity=0.215  Sum_probs=87.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC----CCCceEEEeCCchHHHHHHhhccc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG----VAHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~----~~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      ..++++||+||||.|..+.++++. +...+|++||+++++++.|++++...+    ..++++++.+|+..+++..     
T Consensus        74 ~~~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----  147 (283)
T PRK00811         74 HPNPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-----  147 (283)
T ss_pred             CCCCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----
Confidence            457899999999999999999875 335799999999999999999997543    1478999999999887653     


Q ss_pred             CCCceeEEEEcCCCc-------ccHHHHHHHHhcccCCeEEEEe
Q 029836           93 YHGTFDFVFVDADKD-------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       .++||+|++|....       ...++++.+.+.|+|||++++.
T Consensus       148 -~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        148 -ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             -CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence             57899999996411       1267889999999999999863

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.70  E-value=8.2e-16  Score=113.55  Aligned_cols=119  Identities=20%  Similarity=0.236  Sum_probs=95.7

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .++...++...+...+..+|||+|||+|..+.+++...+ +++++++|+++++++.++++++..+. ++++++.+|+.+.
T Consensus        25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~  102 (196)
T PRK07402         25 KREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPEC  102 (196)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHH
Confidence            445555555555666678999999999999999987655 68999999999999999999999887 5799999998765


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ++.+      ...+|.++++.. .....+++.+.+.|+|||.+++...
T Consensus       103 ~~~~------~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        103 LAQL------APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             HhhC------CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence            5433      345688888753 4567889999999999999998653

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.70  E-value=3e-16  Score=113.38  Aligned_cols=109  Identities=20%  Similarity=0.294  Sum_probs=87.7

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh
Q 029836           10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ   89 (187)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~   89 (187)
                      +|...+...+.+++||+|||+|..++.+++..+ ..+|+++|+++.+++.++++++.++... ++++..|..+.++    
T Consensus        22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~----   95 (170)
T PF05175_consen   22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP----   95 (170)
T ss_dssp             HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC----
T ss_pred             HHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc----
Confidence            344444444888999999999999999998876 6789999999999999999999999865 9999999876543    


Q ss_pred             cccCCCceeEEEEcCCC----c----ccHHHHHHHHhcccCCeEEEE
Q 029836           90 DEKYHGTFDFVFVDADK----D----NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~~----~----~~~~~~~~~~~~L~~gG~lv~  128 (187)
                          .++||+|+++++.    .    ....+++.+.+.|+|||.+++
T Consensus        96 ----~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen   96 ----DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             ----TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ----ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence                4799999999762    1    246788899999999998854

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.68  E-value=4e-15  Score=115.71  Aligned_cols=117  Identities=14%  Similarity=0.196  Sum_probs=93.6

Q ss_pred             CHHHHHHHHHHHh-h---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836            4 SPDEAQFFSMLLK-L---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP   79 (187)
Q Consensus         4 ~~~~~~~l~~l~~-~---~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d   79 (187)
                      .+++..++...+. .   .++.+|||+|||+|..+..+++..+ +.+++++|+++.+++.|++|++.+++.++++++++|
T Consensus       102 r~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D  180 (284)
T TIGR03533       102 RSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSD  180 (284)
T ss_pred             CCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence            4566666666543 1   2457999999999999999998876 689999999999999999999999887789999999


Q ss_pred             chHHHHHHhhcccCCCceeEEEEcCCCc----------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029836           80 ALPLLDQLIQDEKYHGTFDFVFVDADKD----------------------------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~D~v~~d~~~~----------------------------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+.++        .++||+|+++++..                            .+..++..+.+.|+|||.+++.
T Consensus       181 ~~~~~~--------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e  250 (284)
T TIGR03533       181 LFAALP--------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE  250 (284)
T ss_pred             hhhccC--------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            865432        35799999986510                            1245677788999999999874

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.68  E-value=8.4e-16  Score=117.93  Aligned_cols=103  Identities=15%  Similarity=0.235  Sum_probs=87.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++++++.|+++.+..++.++++++++++.+..+..      .++|
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~f  113 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPV  113 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCC
Confidence            35679999999999999999875   57999999999999999999999888788999999997754322      5689


Q ss_pred             eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEe
Q 029836           98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++...   ..+...+++.+.++|||||++++.
T Consensus       114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            99998754   345678899999999999999764

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.68  E-value=1e-15  Score=116.99  Aligned_cols=120  Identities=17%  Similarity=0.222  Sum_probs=101.8

Q ss_pred             CCHHHHHHHHHHH---hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836            3 TSPDEAQFFSMLL---KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP   79 (187)
Q Consensus         3 ~~~~~~~~l~~l~---~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d   79 (187)
                      +++.+..-+..++   .+.+++++||||||.|..++++++..  +.+|+++++|++..+.+++.+++.|+..++++...|
T Consensus        53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d  130 (283)
T COG2230          53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD  130 (283)
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc
Confidence            3444555555554   46678999999999999999999987  589999999999999999999999998899999998


Q ss_pred             chHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           80 ALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      ..++          .+.||-|+.-+.     ++.+..+|+.+.+.|+|||.++++.+...
T Consensus       131 ~rd~----------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~  180 (283)
T COG2230         131 YRDF----------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP  180 (283)
T ss_pred             cccc----------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence            8765          456999997654     67799999999999999999999887654

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.68  E-value=1.5e-15  Score=114.83  Aligned_cols=108  Identities=21%  Similarity=0.384  Sum_probs=89.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++.+|||+|||+|.++..+++..++.++++++|+++.+++.++++++..+. ++++++++|+.+..  +.     .+
T Consensus        42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~-----~~  113 (231)
T TIGR02752        42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP--FD-----DN  113 (231)
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC--CC-----CC
Confidence            444568999999999999999998876578999999999999999999988776 68999999986532  11     46


Q ss_pred             ceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           96 TFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        96 ~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +||+|++...   ..++..+++.+.+.|+|||.+++.+.
T Consensus       114 ~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       114 SFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             CccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            8999998653   35567889999999999999987554

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK01581 speE spermidine synthase; Validated

Probab=99.67  E-value=5.4e-15  Score=116.68  Aligned_cols=107  Identities=13%  Similarity=0.188  Sum_probs=86.2

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHH--HH---HcCC-CCceEEEeCCchHHHHHHhh
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI--IQ---KAGV-AHKIDFREGPALPLLDQLIQ   89 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~--~~---~~~~-~~~i~~~~~d~~~~l~~~~~   89 (187)
                      ...+|++||+||||.|..+.++++. ++..+|++||+++++++.|++.  +.   +... .++++++.+|+.++++..  
T Consensus       147 ~h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~--  223 (374)
T PRK01581        147 KVIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP--  223 (374)
T ss_pred             hCCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc--
Confidence            4568899999999999999988875 3358999999999999999973  22   1122 479999999999988764  


Q ss_pred             cccCCCceeEEEEcCCCc--------ccHHHHHHHHhcccCCeEEEEe
Q 029836           90 DEKYHGTFDFVFVDADKD--------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                          .++||+|++|....        ...++++.+.+.|+|||++++.
T Consensus       224 ----~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        224 ----SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             ----CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence                56899999996421        1267899999999999999874

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=8.9e-16  Score=112.19  Aligned_cols=112  Identities=21%  Similarity=0.339  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +.|.....+-+++...++.+|||||||+|+.+.-+++..   .+|+++|..++..+.|+++++..|. .|+.++++|...
T Consensus        56 s~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~-~nV~v~~gDG~~  131 (209)
T COG2518          56 SAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY-ENVTVRHGDGSK  131 (209)
T ss_pred             cCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC-CceEEEECCccc
Confidence            345555666667778889999999999999999999863   4999999999999999999999999 469999999987


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      -++.       ..+||.|++.+.....+.   .+.+.|++||.+++
T Consensus       132 G~~~-------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~  167 (209)
T COG2518         132 GWPE-------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVI  167 (209)
T ss_pred             CCCC-------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEE
Confidence            6664       469999999887555544   34458899999986

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.66  E-value=1e-15  Score=113.56  Aligned_cols=117  Identities=21%  Similarity=0.341  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      +.+..+.+.+..  +..+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...+. ++++++++|+.+.+
T Consensus        28 ~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l  103 (202)
T PRK00121         28 PAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVL  103 (202)
T ss_pred             CCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHH
Confidence            344455555544  577999999999999999998776 67999999999999999999998877 68999999994444


Q ss_pred             HHHhhcccCCCceeEEEEcCC---Cc--------ccHHHHHHHHhcccCCeEEEEe
Q 029836           85 DQLIQDEKYHGTFDFVFVDAD---KD--------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~---~~--------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +...+    .++||.|++...   ..        ....+++.+.+.|+|||++++.
T Consensus       104 ~~~~~----~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~  155 (202)
T PRK00121        104 LDMFP----DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA  155 (202)
T ss_pred             HHHcC----ccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence            43211    468999998532   11        2578899999999999999874

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.66  E-value=6.8e-16  Score=114.47  Aligned_cols=115  Identities=20%  Similarity=0.287  Sum_probs=88.5

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +.|.....+-.++...+..+|||||||+|+.+..++....+.++|+++|+++...+.|+++++..+. .+++++++|...
T Consensus        56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~  134 (209)
T PF01135_consen   56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSE  134 (209)
T ss_dssp             --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGG
T ss_pred             hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhh
Confidence            3455555555666677889999999999999999998876668999999999999999999999988 589999999876


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      -++.       ..+||.|++.+.....+.   .+.+.|++||.||+
T Consensus       135 g~~~-------~apfD~I~v~~a~~~ip~---~l~~qL~~gGrLV~  170 (209)
T PF01135_consen  135 GWPE-------EAPFDRIIVTAAVPEIPE---ALLEQLKPGGRLVA  170 (209)
T ss_dssp             TTGG-------G-SEEEEEESSBBSS--H---HHHHTEEEEEEEEE
T ss_pred             cccc-------CCCcCEEEEeeccchHHH---HHHHhcCCCcEEEE
Confidence            5553       468999999887555443   45568999999996

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.66  E-value=5.8e-15  Score=121.16  Aligned_cols=160  Identities=21%  Similarity=0.245  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      .....++..++...++.+|||+|||+|..+..+++..+..++|+++|+++.+++.++++++..|+ .+++++++|+.+..
T Consensus       238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~  316 (434)
T PRK14901        238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLL  316 (434)
T ss_pred             CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcc
Confidence            34455556666666778999999999999999998876568999999999999999999999998 46999999987653


Q ss_pred             HHHhhcccCCCceeEEEEcCCCc---------c----------------cHHHHHHHHhcccCCeEEEEeCcCCCccccC
Q 029836           85 DQLIQDEKYHGTFDFVFVDADKD---------N----------------YVNYHKRLIELVKVGGVIGYDNTLWGGSVVA  139 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~  139 (187)
                      .....   ..++||.|++|++..         +                ....++.+.++|||||.|++..+....    
T Consensus       317 ~~~~~---~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~----  389 (434)
T PRK14901        317 ELKPQ---WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP----  389 (434)
T ss_pred             ccccc---ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh----
Confidence            21100   035899999997521         0                246788889999999999987654321    


Q ss_pred             CCCCCchhhhhhHHHHHHHHHHHHhcCCCeeEE-----Eeec---CCeeEEEEE
Q 029836          140 PPDADLDEHFLYLRDFVQELNKALAVDPRIEIC-----QISI---ADGVTLCRR  185 (187)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~---~~G~~i~~k  185 (187)
                                .   +....+...+..+|+|...     ++|-   .+|+-+++-
T Consensus       390 ----------~---Ene~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l  430 (434)
T PRK14901        390 ----------A---ENEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVL  430 (434)
T ss_pred             ----------h---hHHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEE
Confidence                      1   1223334445667777543     3452   488877753

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.65  E-value=1.4e-15  Score=102.96  Aligned_cols=102  Identities=23%  Similarity=0.366  Sum_probs=85.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      +.+|||+|||+|..+..+++..  ..+++++|+++..++.++.+++..+...+++++++|..+..+.+.     .++||+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~-----~~~~D~   73 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP-----DGKFDL   73 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT-----TT-EEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc-----CceeEE
Confidence            3589999999999999999875  589999999999999999999999988899999999987764442     579999


Q ss_pred             EEEcCCCc-----------ccHHHHHHHHhcccCCeEEEE
Q 029836          100 VFVDADKD-----------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus       100 v~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+.+++..           .+..+++.+.++|+|||++++
T Consensus        74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence            99997621           246789999999999999986

...

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.65  E-value=1.8e-15  Score=113.66  Aligned_cols=115  Identities=17%  Similarity=0.288  Sum_probs=98.4

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836            8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      +-+|..++......+|||+|||+|..++.+++..+ ..++++||+++++.+.|+++++.+++.++++++++|..++.+..
T Consensus        33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~  111 (248)
T COG4123          33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL  111 (248)
T ss_pred             HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence            34667777777788999999999999999998866 49999999999999999999999999999999999998887765


Q ss_pred             hhcccCCCceeEEEEcCC------C---------------cccHHHHHHHHhcccCCeEEEE
Q 029836           88 IQDEKYHGTFDFVFVDAD------K---------------DNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~------~---------------~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .     ..+||+|+++++      .               -...++++.+..+||+||.+.+
T Consensus       112 ~-----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~  168 (248)
T COG4123         112 V-----FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF  168 (248)
T ss_pred             c-----ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence            2     457999999876      0               1236788888999999999986

>PLN02366 spermidine synthase

Probab=99.65  E-value=1.6e-14  Score=113.09  Aligned_cols=107  Identities=18%  Similarity=0.251  Sum_probs=88.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC--C-CCceEEEeCCchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG--V-AHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ..++++||+||||.|..+.++++. ++..+++.||+++..++.+++++...+  + .++++++.+|+.+++....     
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-----  162 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-----  162 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-----
Confidence            467899999999999999999876 435799999999999999999987642  2 3689999999998886541     


Q ss_pred             CCceeEEEEcCCCc-------ccHHHHHHHHhcccCCeEEEEe
Q 029836           94 HGTFDFVFVDADKD-------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        94 ~~~~D~v~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++||+|++|....       ...++++.+.+.|+|||+++..
T Consensus       163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            35899999997521       2357899999999999999853

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.65  E-value=3.3e-15  Score=114.88  Aligned_cols=111  Identities=14%  Similarity=0.164  Sum_probs=87.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHH--cCCCCceEEEeCCchHHHHHHhhcccC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK--AGVAHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~--~~~~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ...++.+|||+|||+|..+..+++..++.++|+++|+++++++.|+++...  ....++++++++|+.+. + +.     
T Consensus        70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p-~~-----  142 (261)
T PLN02233         70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P-FD-----  142 (261)
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C-CC-----
Confidence            445678999999999999999988765467999999999999999877642  22335899999998653 2 11     


Q ss_pred             CCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           94 HGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        94 ~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +++||+|++...   ..+...++.++.+.|||||.+++.+...
T Consensus       143 ~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        143 DCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             CCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence            568999987643   3466789999999999999999877654

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=1.2e-14  Score=111.96  Aligned_cols=147  Identities=18%  Similarity=0.208  Sum_probs=106.9

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      ++|..+..  +++++||+|||+|..++..++. + ..+++++|++|.+++.+++|.+.+++...++....+..+...   
T Consensus       154 ~~Le~~~~--~g~~vlDvGcGSGILaIAa~kL-G-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~---  226 (300)
T COG2264         154 EALEKLLK--KGKTVLDVGCGSGILAIAAAKL-G-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE---  226 (300)
T ss_pred             HHHHHhhc--CCCEEEEecCChhHHHHHHHHc-C-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc---
Confidence            44444433  7899999999999999987764 3 478999999999999999999999886534333333332222   


Q ss_pred             hcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHHHhcCCC
Q 029836           89 QDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPR  168 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (187)
                           .++||+|+++.-.+-...+...+.++++|||+++++.++-.                    ....+.+.+.....
T Consensus       227 -----~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~--------------------q~~~V~~a~~~~gf  281 (300)
T COG2264         227 -----NGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILED--------------------QAESVAEAYEQAGF  281 (300)
T ss_pred             -----cCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHh--------------------HHHHHHHHHHhCCC
Confidence                 46999999987666677888889999999999999886632                    22334444444434


Q ss_pred             eeEEEeecCCeeEEEEEcC
Q 029836          169 IEICQISIADGVTLCRRIG  187 (187)
Q Consensus       169 ~~~~~~p~~~G~~i~~k~~  187 (187)
                      ......--+++.++..||+
T Consensus       282 ~v~~~~~~~eW~~i~~kr~  300 (300)
T COG2264         282 EVVEVLEREEWVAIVGKRK  300 (300)
T ss_pred             eEeEEEecCCEEEEEEEcC
Confidence            4444455688888888874

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=99.64  E-value=2.5e-16  Score=105.11  Aligned_cols=102  Identities=32%  Similarity=0.587  Sum_probs=52.1

Q ss_pred             EEEcccccHHHHHHHhhCCCCC--EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEE
Q 029836           24 MEIGVFTGYSLLATALAIPDDG--KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVF  101 (187)
Q Consensus        24 LeiG~g~G~~~~~l~~~~~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~  101 (187)
                      ||||++.|.++.++++.+++..  +++++|..+. .+.+++.+++.+...+++++++++.+.++.+.     .+++|+++
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~   74 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIF   74 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEE
Confidence            7999999999999999887554  7999999986 44555666666777889999999999988774     36899999


Q ss_pred             EcCCC--cccHHHHHHHHhcccCCeEEEEeCc
Q 029836          102 VDADK--DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus       102 ~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|+.+  +.....++.+++.|+|||++++||+
T Consensus        75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~  106 (106)
T PF13578_consen   75 IDGDHSYEAVLRDLENALPRLAPGGVIVFDDY  106 (106)
T ss_dssp             EES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence            99974  5577889999999999999999985

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.64  E-value=1.7e-15  Score=116.76  Aligned_cols=118  Identities=19%  Similarity=0.281  Sum_probs=89.0

Q ss_pred             HHHHHHHHHH---hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            6 DEAQFFSMLL---KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         6 ~~~~~l~~l~---~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      .+.+.+..++   .+.++.+|||||||.|..+.++++..  +++|+++.+|++..+.+++.+++.|+.+++++..+|..+
T Consensus        46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~  123 (273)
T PF02353_consen   46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD  123 (273)
T ss_dssp             HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence            3444444544   45678899999999999999999986  589999999999999999999999999999999999865


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      +          ..+||.|+.-..     ++.+..+|+.+.++|+|||.++++.+....
T Consensus       124 ~----------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~  171 (273)
T PF02353_consen  124 L----------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD  171 (273)
T ss_dssp             -------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred             c----------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence            4          348999986644     356799999999999999999988765543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.63  E-value=2e-14  Score=105.92  Aligned_cols=105  Identities=26%  Similarity=0.359  Sum_probs=87.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ....++||||||+|.++..++...| +.+++++|+++.+++.|++++...++ .+++++++|+.+.++...+    .+++
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~----~~~~   88 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFP----DGSL   88 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCC----CCce
Confidence            3566999999999999999998876 68999999999999999999998888 5899999999876654321    3589


Q ss_pred             eEEEEcCC---Cc-c-------cHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDAD---KD-N-------YVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~---~~-~-------~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |.|+++.+   .. .       ...+++.+.+.|+|||.+++
T Consensus        89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~  130 (194)
T TIGR00091        89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF  130 (194)
T ss_pred             eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence            99998742   11 1       25789999999999999986

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.63  E-value=1.2e-14  Score=119.74  Aligned_cols=123  Identities=17%  Similarity=0.252  Sum_probs=98.5

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +.+...++..++...++.+|||+|||+|..+..+++.+++.++++++|+++.+++.++++++..|+. +++++++|+.+.
T Consensus       235 qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~  313 (444)
T PRK14902        235 QDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKV  313 (444)
T ss_pred             EChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccc
Confidence            3455566666666667789999999999999999988754689999999999999999999999984 599999999765


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcc-------------------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDN-------------------------YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .+.+      .++||+|++|++...                         ...+++.+.++|||||.+++..+..
T Consensus       314 ~~~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        314 HEKF------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             cchh------cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            4333      357999999975210                         1357888899999999999765543

>TIGR00417 speE spermidine synthase

Probab=99.63  E-value=3.8e-14  Score=109.59  Aligned_cols=106  Identities=18%  Similarity=0.211  Sum_probs=87.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC---CCceEEEeCCchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV---AHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ..+|++||+||||.|..+..+++..+ ..+++++|+++++++.+++++...+.   .++++++.+|+.+++...      
T Consensus        70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------  142 (270)
T TIGR00417        70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------  142 (270)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------
Confidence            45678999999999999999887643 57899999999999999999876431   267899999998888754      


Q ss_pred             CCceeEEEEcCCC-----cc--cHHHHHHHHhcccCCeEEEEe
Q 029836           94 HGTFDFVFVDADK-----DN--YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        94 ~~~~D~v~~d~~~-----~~--~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++||+|++|...     ..  ..++++.+.++|+|||++++.
T Consensus       143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            5789999999751     11  367889999999999999975

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.63  E-value=2.1e-14  Score=117.56  Aligned_cols=123  Identities=23%  Similarity=0.306  Sum_probs=98.7

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +.....++..++...++.+|||+|||+|..+..++..+++.++|+++|+++.+++.+++++++.|+ .++++.++|+.++
T Consensus       222 Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-~~v~~~~~Da~~l  300 (431)
T PRK14903        222 QGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-SSIEIKIADAERL  300 (431)
T ss_pred             ECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhhh
Confidence            344456666666677788999999999999999998876568999999999999999999999998 4699999998764


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCc-------------------------ccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKD-------------------------NYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ....      .++||.|++|++..                         ...+.++.+.++|+|||.+++..+..
T Consensus       301 ~~~~------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        301 TEYV------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             hhhh------hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            3222      46899999997621                         11445788889999999999876654

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.63  E-value=8.5e-15  Score=114.92  Aligned_cols=117  Identities=15%  Similarity=0.216  Sum_probs=92.8

Q ss_pred             CHHHHHHHHHHHh-h-c-C-CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836            4 SPDEAQFFSMLLK-L-I-N-AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP   79 (187)
Q Consensus         4 ~~~~~~~l~~l~~-~-~-~-~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d   79 (187)
                      .+++..++...+. . . . +.+|||+|||+|.+++.++...+ ..+++++|+++.+++.|++|++.+++.++++++++|
T Consensus       114 r~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D  192 (307)
T PRK11805        114 RSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD  192 (307)
T ss_pred             CCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence            4556666665543 2 1 2 36899999999999999998876 689999999999999999999999887789999999


Q ss_pred             chHHHHHHhhcccCCCceeEEEEcCCC----------------------------cccHHHHHHHHhcccCCeEEEEe
Q 029836           80 ALPLLDQLIQDEKYHGTFDFVFVDADK----------------------------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~D~v~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+.++        .++||+|+++++.                            ..+..+++.+.+.|+|||.+++.
T Consensus       193 ~~~~l~--------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E  262 (307)
T PRK11805        193 LFAALP--------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE  262 (307)
T ss_pred             hhhhCC--------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            865443        3579999998641                            01246678888999999999974

>PLN02244 tocopherol O-methyltransferase

Probab=99.62  E-value=9.4e-15  Score=116.39  Aligned_cols=107  Identities=17%  Similarity=0.222  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|.++..+++.+  +.+|+++|+++.+++.++++.+..+..+++++.++|+.+. + +.     +++|
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~-~~-----~~~F  187 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-P-FE-----DGQF  187 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-C-CC-----CCCc
Confidence            356799999999999999999875  4799999999999999999999888878899999998653 1 11     5789


Q ss_pred             eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      |+|++...   ..+...+++++.++|||||.+++.+...
T Consensus       188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~  226 (340)
T PLN02244        188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCH  226 (340)
T ss_pred             cEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            99998644   3456789999999999999999876543

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.62  E-value=8e-15  Score=109.53  Aligned_cols=113  Identities=21%  Similarity=0.330  Sum_probs=91.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      ++|.....+..++...+..+|||+|||+|+.+..+++..   .+++++|+++++++.+++++++.++ .++++.++|+.+
T Consensus        62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~  137 (212)
T PRK00312         62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWK  137 (212)
T ss_pred             CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCccc
Confidence            466666777777777778999999999999999877653   4899999999999999999999887 469999999865


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++.       .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       138 ~~~~-------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        138 GWPA-------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP  174 (212)
T ss_pred             CCCc-------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence            4331       3689999998764443   45667899999999874

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=5.2e-15  Score=110.51  Aligned_cols=114  Identities=19%  Similarity=0.308  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      |.-..++-..+...++.+|+|.|+|+|..+.+|+.++.+.++|+++|+.++.++.|++|++..++.+++++..+|..+..
T Consensus        80 PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~  159 (256)
T COG2519          80 PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI  159 (256)
T ss_pred             CCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence            44445566667788999999999999999999999888789999999999999999999999999888999999987654


Q ss_pred             HHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           85 DQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .        .+.||.||+|.+  +.-++++.+...|+|||.+++
T Consensus       160 ~--------~~~vDav~LDmp--~PW~~le~~~~~Lkpgg~~~~  193 (256)
T COG2519         160 D--------EEDVDAVFLDLP--DPWNVLEHVSDALKPGGVVVV  193 (256)
T ss_pred             c--------ccccCEEEEcCC--ChHHHHHHHHHHhCCCcEEEE
Confidence            4        458999999974  446788899999999999986

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.61  E-value=5.3e-15  Score=109.70  Aligned_cols=113  Identities=19%  Similarity=0.261  Sum_probs=91.7

Q ss_pred             HHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            9 QFFSMLLKL---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         9 ~~l~~l~~~---~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      .+++.-+..   ....+|||||||.|..+..+|+.   +.+|+++|++++.++.|+....+.++  ++.+.+..+++...
T Consensus        46 ~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~  120 (243)
T COG2227          46 DYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLAS  120 (243)
T ss_pred             hhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHh
Confidence            344444443   46789999999999999999986   58999999999999999999998887  47777777766654


Q ss_pred             HHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           86 QLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .       .++||+|++-..   .++...++..|.+++||||.++++.+..
T Consensus       121 ~-------~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         121 A-------GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             c-------CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence            2       479999998654   3456779999999999999999987753

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.61  E-value=1.1e-14  Score=107.63  Aligned_cols=101  Identities=16%  Similarity=0.145  Sum_probs=82.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++.+|||+|||+|..+.++++.   +.+|+++|+++.+++.++++.+..++ .++++...|..+..  +      .+
T Consensus        27 ~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~--~------~~   94 (197)
T PRK11207         27 KVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLT--F------DG   94 (197)
T ss_pred             ccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCC--c------CC
Confidence            3456789999999999999999975   57999999999999999999998877 56888888875431  1      35


Q ss_pred             ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836           96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +||+|++...     ......+++.+.++|+|||++++
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            7999987643     23457889999999999998654

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.61  E-value=1.3e-13  Score=105.55  Aligned_cols=143  Identities=20%  Similarity=0.221  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            6 DEAQFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         6 ~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      .+...+..+... .++++|||+|||+|..++.+++. + ..+++++|+++.+++.|+++++.+++..++.+..++     
T Consensus       105 tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----  177 (250)
T PRK00517        105 TTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----  177 (250)
T ss_pred             HHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----
Confidence            344455555543 46789999999999998877654 3 357999999999999999999988775444443321     


Q ss_pred             HHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHHHh
Q 029836           85 DQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALA  164 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (187)
                                .+||+|+++........++..+.+.|+|||++++.++...                    ....+.+.+.
T Consensus       178 ----------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~--------------------~~~~v~~~l~  227 (250)
T PRK00517        178 ----------LKADVIVANILANPLLELAPDLARLLKPGGRLILSGILEE--------------------QADEVLEAYE  227 (250)
T ss_pred             ----------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHh--------------------hHHHHHHHHH
Confidence                      2699999877656667788899999999999998765421                    1233333444


Q ss_pred             cCCCeeE-EEeecCCeeEEEEEc
Q 029836          165 VDPRIEI-CQISIADGVTLCRRI  186 (187)
Q Consensus       165 ~~~~~~~-~~~p~~~G~~i~~k~  186 (187)
                      .. +|.. .....+++..+..++
T Consensus       228 ~~-Gf~~~~~~~~~~W~~~~~~~  249 (250)
T PRK00517        228 EA-GFTLDEVLERGEWVALVGKK  249 (250)
T ss_pred             HC-CCEEEEEEEeCCEEEEEEEe
Confidence            33 4443 344567777777654

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.61  E-value=3.4e-14  Score=114.87  Aligned_cols=110  Identities=16%  Similarity=0.293  Sum_probs=89.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEEEeCCchHHHHHHhhcccCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ...++++|||+|||+|.+++..+..  ...+|+++|+++.+++.|++|++.+++. .+++++++|+.++++.+...   .
T Consensus       217 ~~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~  291 (396)
T PRK15128        217 RYVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---G  291 (396)
T ss_pred             HhcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---C
Confidence            3456889999999999998876643  2469999999999999999999999985 58999999999988765322   3


Q ss_pred             CceeEEEEcCCC------------cccHHHHHHHHhcccCCeEEEEeC
Q 029836           95 GTFDFVFVDADK------------DNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        95 ~~~D~v~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ++||+|++|++.            ..+..++..+.++|++||+++...
T Consensus       292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS  339 (396)
T ss_pred             CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            589999999872            235566677889999999998643

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.61  E-value=3e-14  Score=117.34  Aligned_cols=119  Identities=20%  Similarity=0.200  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      ....+...++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.++++++..|+ ++++++++|+.+..+
T Consensus       237 ~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~  315 (445)
T PRK14904        237 PTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSP  315 (445)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCccccccc
Confidence            3444455555556678999999999999999998776567999999999999999999999998 579999999876532


Q ss_pred             HHhhcccCCCceeEEEEcCCCc-------------------------ccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           86 QLIQDEKYHGTFDFVFVDADKD-------------------------NYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                              .++||.|++|++..                         ....++..+.+.|+|||.+++..+..
T Consensus       316 --------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        316 --------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             --------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence                    45899999996521                         01347888899999999999876543

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.61  E-value=1.6e-14  Score=106.55  Aligned_cols=105  Identities=15%  Similarity=0.143  Sum_probs=81.2

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhccc
Q 029836           13 MLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      ..+...++.+|||+|||+|..+.++++.   +.+|+++|+++.+++.++++.+..++  ++++...|.... + +     
T Consensus        24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~-~-~-----   91 (195)
T TIGR00477        24 EAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAA-A-L-----   91 (195)
T ss_pred             HHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhc-c-c-----
Confidence            3344556889999999999999999974   57999999999999999998887776  367777776432 1 1     


Q ss_pred             CCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           93 YHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        93 ~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                       .++||+|+....     ......+++.+.+.|+|||++++-.
T Consensus        92 -~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~  133 (195)
T TIGR00477        92 -NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA  133 (195)
T ss_pred             -cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence             357999987543     2345788999999999999865543

Part of a tellurite-reducing operon tehA and tehB

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.60  E-value=1.1e-14  Score=112.64  Aligned_cols=112  Identities=21%  Similarity=0.370  Sum_probs=91.1

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++.+|||+|||+|..+..++...+...+|+++|+++.+++.|+++....+. ++++++.+|..+. + +.     ++
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l-~-~~-----~~  145 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEAL-P-VA-----DN  145 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhC-C-CC-----CC
Confidence            345678999999999999888887765567999999999999999999998887 5899999988653 2 10     46


Q ss_pred             ceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           96 TFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        96 ~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      +||+|+....   ..+....++++.++|||||.+++.++...+
T Consensus       146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~  188 (272)
T PRK11873        146 SVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG  188 (272)
T ss_pred             ceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence            8999997753   345678899999999999999998876543

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.60  E-value=7.6e-14  Score=107.55  Aligned_cols=118  Identities=15%  Similarity=0.195  Sum_probs=93.1

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      ...+...++...++.+|||+|||+|..+..++..++..+.|+++|+++.+++.++++++..+. .++++++.|+..+.. 
T Consensus        59 ~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~-  136 (264)
T TIGR00446        59 SSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGA-  136 (264)
T ss_pred             HHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhh-
Confidence            334444455555678999999999999999998876557999999999999999999999988 579999999865422 


Q ss_pred             HhhcccCCCceeEEEEcCCCc-------------------------ccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           87 LIQDEKYHGTFDFVFVDADKD-------------------------NYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .      .++||.|++|++..                         ....+++.+.++|||||+|+...+.
T Consensus       137 ~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       137 A------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS  201 (264)
T ss_pred             h------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            1      35699999997521                         1235788888999999999976554

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=99.60  E-value=8.8e-14  Score=101.53  Aligned_cols=156  Identities=21%  Similarity=0.277  Sum_probs=119.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccH--HHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGY--SLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP   79 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~--~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d   79 (187)
                      .+|...+||+.|++..+.+.++|+.|..|.  +++.|+.+- ..+++++||.++++.+...++.+...++.+.++|+.++
T Consensus        25 ~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~  104 (218)
T PF07279_consen   25 KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE  104 (218)
T ss_pred             CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence            367899999999999999999999877553  345544332 34689999999999999999999998887778999998


Q ss_pred             ch-HHHHHHhhcccCCCceeEEEEcCCCcccH-HHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHH
Q 029836           80 AL-PLLDQLIQDEKYHGTFDFVFVDADKDNYV-NYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQ  157 (187)
Q Consensus        80 ~~-~~l~~~~~~~~~~~~~D~v~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (187)
                      .. +.++.+       ...|++++|+..+++. .+|+. .++-+.|.+++..|....+.     .             -.
T Consensus       105 ~~e~~~~~~-------~~iDF~vVDc~~~d~~~~vl~~-~~~~~~GaVVV~~Na~~r~~-----~-------------~~  158 (218)
T PF07279_consen  105 APEEVMPGL-------KGIDFVVVDCKREDFAARVLRA-AKLSPRGAVVVCYNAFSRST-----N-------------GF  158 (218)
T ss_pred             CHHHHHhhc-------cCCCEEEEeCCchhHHHHHHHH-hccCCCceEEEEeccccCCc-----C-------------Cc
Confidence            54 566664       5789999999988887 77765 44446777888888765321     0             01


Q ss_pred             HHHHHHhcCCCeeEEEeecCCeeEEEE
Q 029836          158 ELNKALAVDPRIEICQISIADGVTLCR  184 (187)
Q Consensus       158 ~~~~~~~~~~~~~~~~~p~~~G~~i~~  184 (187)
                      .+...+...+.+.+.+||+|.|+.+++
T Consensus       159 ~w~~~~~~~r~Vrsv~LPIG~GleVt~  185 (218)
T PF07279_consen  159 SWRSVLRGRRVVRSVFLPIGKGLEVTR  185 (218)
T ss_pred             cHHHhcCCCCceeEEEeccCCCeEEEE
Confidence            233445677889999999999999986

The function of this family is unknown.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.60  E-value=2.6e-14  Score=112.53  Aligned_cols=104  Identities=16%  Similarity=0.098  Sum_probs=85.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||||||+|..+..+++.   +.+|+++|+++++++.|+++....+...+++++++++.+. +..      .++||
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-~~~------~~~FD  200 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-ADE------GRKFD  200 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-hhc------cCCCC
Confidence            4468999999999999988863   5799999999999999998877655556899999998654 221      56899


Q ss_pred             EEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           99 FVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        99 ~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|++...   ..+...+++.+.++|||||.+++....
T Consensus       201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        201 AVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             EEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            9998654   345678999999999999999998653

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.60  E-value=2e-14  Score=109.81  Aligned_cols=106  Identities=16%  Similarity=0.211  Sum_probs=86.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .+..+|||+|||+|..+..+++.+ .++.+++++|+++.+++.|++++...+...+++++++|+.+..         .+.
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~  125 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN  125 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence            356799999999999999988743 2368999999999999999999998887778999999986542         235


Q ss_pred             eeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           97 FDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        97 ~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|+|++...     ......+++++.+.|+|||.+++.+..
T Consensus       126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            898886532     223467899999999999999987744

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.59  E-value=2.8e-14  Score=111.11  Aligned_cols=117  Identities=16%  Similarity=0.288  Sum_probs=92.2

Q ss_pred             CHHHHHHHHHHHhh---cCC-CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836            4 SPDEAQFFSMLLKL---INA-KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP   79 (187)
Q Consensus         4 ~~~~~~~l~~l~~~---~~~-~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d   79 (187)
                      .|++..++......   .++ .+|||+|||+|..++.++...+ +.+++++|+++.+++.|++|++.+++..+++++++|
T Consensus        95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d  173 (284)
T TIGR00536        95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN  173 (284)
T ss_pred             CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence            35566666665532   223 6999999999999999998876 689999999999999999999999886679999999


Q ss_pred             chHHHHHHhhcccCCCceeEEEEcCCC--c--------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029836           80 ALPLLDQLIQDEKYHGTFDFVFVDADK--D--------------------------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~D~v~~d~~~--~--------------------------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+.++        ..+||+|+.+++.  .                          .+..++..+.+.|+|||++++.
T Consensus       174 ~~~~~~--------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e  243 (284)
T TIGR00536       174 LFEPLA--------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE  243 (284)
T ss_pred             hhccCc--------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            865432        3479999998641  0                          2345677788899999999874

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00740 methyltransferase, putative

Probab=99.59  E-value=4.3e-14  Score=107.45  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=86.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      +..+|||+|||+|..+..+++.++ ++.+++++|+++.+++.|+++++..+...+++++++|+.+..         ...+
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~  123 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---------IKNA  123 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---------CCCC
Confidence            557999999999999999988653 368999999999999999999988776668999999997542         2357


Q ss_pred             eEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           98 DFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        98 D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      |+|++...     ..+...+++.+.+.|+|||.+++.+...
T Consensus       124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence            88876543     1234678999999999999999987644

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.59  E-value=5.6e-14  Score=109.08  Aligned_cols=147  Identities=22%  Similarity=0.284  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            5 PDEAQFFSMLLKLI-NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         5 ~~~~~~l~~l~~~~-~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +.+.--|+.|.... ++++|||+|||+|..++..++. + ..+|+++|++|.+++.|++|.+.+++..++.+..  ..+.
T Consensus       146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~  221 (295)
T PF06325_consen  146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDL  221 (295)
T ss_dssp             HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCT
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--eccc
Confidence            44555566666554 4689999999999999987764 3 4789999999999999999999999988776631  1111


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHHH
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKAL  163 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (187)
                      .         .++||+|+++....-.......+.++|+|||+++++.++..                    ....+.+.+
T Consensus       222 ~---------~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~--------------------~~~~v~~a~  272 (295)
T PF06325_consen  222 V---------EGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEE--------------------QEDEVIEAY  272 (295)
T ss_dssp             C---------CS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGG--------------------GHHHHHHHH
T ss_pred             c---------cccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHH--------------------HHHHHHHHH
Confidence            1         46899999988766667777888899999999999887642                    123344444


Q ss_pred             hcCCCeeEE-EeecCCeeEEEEEc
Q 029836          164 AVDPRIEIC-QISIADGVTLCRRI  186 (187)
Q Consensus       164 ~~~~~~~~~-~~p~~~G~~i~~k~  186 (187)
                      . . ++... ...-+++.+++-||
T Consensus       273 ~-~-g~~~~~~~~~~~W~~l~~~K  294 (295)
T PF06325_consen  273 K-Q-GFELVEEREEGEWVALVFKK  294 (295)
T ss_dssp             H-T-TEEEEEEEEETTEEEEEEEE
T ss_pred             H-C-CCEEEEEEEECCEEEEEEEe
Confidence            3 3 66554 34578888887765

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.59  E-value=1.1e-14  Score=109.60  Aligned_cols=103  Identities=19%  Similarity=0.233  Sum_probs=87.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v  100 (187)
                      ++|||||||+|..+..+++.++ +.+++++|+++++++.++++++..++.+++++..+|..+. + .      .++||+|
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~~fD~I   71 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PDTYDLV   71 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CCCCCEe
Confidence            4799999999999999998875 5899999999999999999999999888999999988543 1 1      3589999


Q ss_pred             EEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836          101 FVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus       101 ~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +....   ..+...+++.+.++|+|||.+++.+..
T Consensus        72 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       72 FGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             ehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence            97542   345678999999999999999998764

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.59  E-value=9.2e-14  Score=113.90  Aligned_cols=122  Identities=22%  Similarity=0.228  Sum_probs=95.0

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +.....++..++...++.+|||+|||+|..+..+++..+ +++|+++|+++.+++.++++++..|.  +++++++|+.+.
T Consensus       229 Qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~  305 (427)
T PRK10901        229 QDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDP  305 (427)
T ss_pred             ECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccc
Confidence            334455555566666788999999999999999998765 48999999999999999999999887  368899998754


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcc-------------------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDN-------------------------YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .....     .++||.|++|++...                         ...+++.+.++|+|||.+++..+..
T Consensus       306 ~~~~~-----~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  375 (427)
T PRK10901        306 AQWWD-----GQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI  375 (427)
T ss_pred             hhhcc-----cCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            32211     357999999975210                         1357888889999999999876543

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.59  E-value=7.4e-15  Score=106.85  Aligned_cols=97  Identities=21%  Similarity=0.257  Sum_probs=86.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++.+|+|+|||.|.+|..+++..| ++.++++|.|++|++.|++.+      ++++|..+|..++-+        ...
T Consensus        28 ~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p--------~~~   92 (257)
T COG4106          28 LERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP--------EQP   92 (257)
T ss_pred             ccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC--------CCc
Confidence            44678999999999999999999998 799999999999999997765      789999999987765        468


Q ss_pred             eeEEEEcCC---CcccHHHHHHHHhcccCCeEEEE
Q 029836           97 FDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        97 ~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|++|.++.   -.++...|..+...|.|||+|.+
T Consensus        93 ~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAV  127 (257)
T COG4106          93 TDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAV  127 (257)
T ss_pred             cchhhhhhhhhhccccHHHHHHHHHhhCCCceEEE
Confidence            899999875   67888999999999999999986

>PLN02823 spermine synthase

Probab=99.58  E-value=1.4e-13  Score=108.77  Aligned_cols=107  Identities=14%  Similarity=0.119  Sum_probs=87.6

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC---CCCceEEEeCCchHHHHHHhhccc
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG---VAHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      ...+|++||.||+|.|..+.++++..+ ..++++||++++.++.+++++...+   ..++++++.+|+..++...     
T Consensus       100 ~~~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-----  173 (336)
T PLN02823        100 HHPNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-----  173 (336)
T ss_pred             hCCCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-----
Confidence            345789999999999999999988643 5789999999999999999987542   2479999999999988653     


Q ss_pred             CCCceeEEEEcCCCc---------ccHHHHH-HHHhcccCCeEEEEe
Q 029836           93 YHGTFDFVFVDADKD---------NYVNYHK-RLIELVKVGGVIGYD  129 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~---------~~~~~~~-~~~~~L~~gG~lv~~  129 (187)
                       .++||+|++|....         ...++++ .+.+.|+|||++++.
T Consensus       174 -~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        174 -DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             -CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence             57899999995311         1357887 899999999999864

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.58  E-value=2e-14  Score=110.41  Aligned_cols=97  Identities=19%  Similarity=0.298  Sum_probs=81.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|.++..+++..+ +.+++++|+++.+++.+++++      ++++++.+|+.++.+        .++|
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~~f   94 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQAL   94 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CCCc
Confidence            4568999999999999999998875 689999999999999998764      468899999865432        4589


Q ss_pred             eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEe
Q 029836           98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++...   ..+...+++.+.+.|+|||.+++.
T Consensus        95 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         95 DLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             cEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            99998765   345678999999999999999885

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.58  E-value=1.4e-13  Score=101.53  Aligned_cols=112  Identities=14%  Similarity=0.117  Sum_probs=86.0

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh
Q 029836           10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ   89 (187)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~   89 (187)
                      ++..+....+..++||+|||+|.+++.++...  ..+|+++|.++++++.+++|++.+++ .+++++++|..+.++..  
T Consensus        44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~--  118 (199)
T PRK10909         44 LFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQP--  118 (199)
T ss_pred             HHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhc--
Confidence            44445444567899999999999999755442  46999999999999999999999987 58999999998776532  


Q ss_pred             cccCCCceeEEEEcCC-Ccc-cHHHHHHHHh--cccCCeEEEEeC
Q 029836           90 DEKYHGTFDFVFVDAD-KDN-YVNYHKRLIE--LVKVGGVIGYDN  130 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~-~~~-~~~~~~~~~~--~L~~gG~lv~~~  130 (187)
                          .++||+||+|++ ... ....++.+..  +|++++++++..
T Consensus       119 ----~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~  159 (199)
T PRK10909        119 ----GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES  159 (199)
T ss_pred             ----CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence                357999999998 333 3444555543  478999988753

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.58  E-value=1.3e-13  Score=113.03  Aligned_cols=123  Identities=18%  Similarity=0.249  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      .....++..++...++.+|||+|||+|..+..+++.++ .++++++|+++++++.+++++++.|+..++++..+|.....
T Consensus       224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~  302 (426)
T TIGR00563       224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS  302 (426)
T ss_pred             CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence            34455666666666788999999999999999998876 68999999999999999999999988534445667664321


Q ss_pred             HHHhhcccCCCceeEEEEcCCCc---------c----------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           85 DQLIQDEKYHGTFDFVFVDADKD---------N----------------YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ....     .++||.|++|++..         +                ...+++.++++|||||.+++..+..
T Consensus       303 ~~~~-----~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       303 QWAE-----NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             cccc-----ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            1100     46899999996511         1                2468888899999999999877654

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.58  E-value=1.2e-14  Score=96.01  Aligned_cols=93  Identities=24%  Similarity=0.372  Sum_probs=74.3

Q ss_pred             EEEEcccccHHHHHHHhhCCC--CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836           23 TMEIGVFTGYSLLATALAIPD--DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        23 vLeiG~g~G~~~~~l~~~~~~--~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v  100 (187)
                      |||+|||+|..+..+++.++.  ..+++++|+++++++.++++.+..+.  +++++++|+.++ +..      .++||+|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~------~~~~D~v   71 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS------DGKFDLV   71 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH------SSSEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc------CCCeeEE
Confidence            799999999999999988732  37999999999999999999988665  899999999774 433      6799999


Q ss_pred             EEc-CC-----CcccHHHHHHHHhcccCCe
Q 029836          101 FVD-AD-----KDNYVNYHKRLIELVKVGG  124 (187)
Q Consensus       101 ~~d-~~-----~~~~~~~~~~~~~~L~~gG  124 (187)
                      ++- ..     ++....+++.+.++|+|||
T Consensus        72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   72 VCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            993 31     3456789999999999998

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.57  E-value=5.2e-14  Score=112.67  Aligned_cols=119  Identities=18%  Similarity=0.250  Sum_probs=99.3

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEEEeCCchHHHHHHh
Q 029836           10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPLLDQLI   88 (187)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~   88 (187)
                      .-..+....++++||++-|++|..++..+..-  ..+||+||.|...++.|++|++-+|+. .+++++++|+.+++....
T Consensus       208 ~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~  285 (393)
T COG1092         208 NRRALGELAAGKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAE  285 (393)
T ss_pred             HHHHHhhhccCCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHH
Confidence            33445555668999999999999999988652  359999999999999999999999985 668999999999998875


Q ss_pred             hcccCCCceeEEEEcCC------------CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           89 QDEKYHGTFDFVFVDAD------------KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~------------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ..   ..+||+|++|++            ..+|...+..+.++|+|||.+++.++..
T Consensus       286 ~~---g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         286 RR---GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             hc---CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            43   459999999987            2356778888899999999999876654

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.57  E-value=2.3e-14  Score=109.94  Aligned_cols=95  Identities=20%  Similarity=0.177  Sum_probs=79.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..++...+ +.+|+++|+++.+++.|++        .++++.++|+.++.+        .++|
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~--------~~~~~~~~d~~~~~~--------~~~f   90 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARE--------RGVDARTGDVRDWKP--------KPDT   90 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHh--------cCCcEEEcChhhCCC--------CCCc
Confidence            4568999999999999999998875 6899999999999998865        257889999865432        4689


Q ss_pred             eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEe
Q 029836           98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++...   ..+...++..+.+.|||||.+++.
T Consensus        91 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         91 DVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             eEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            99998764   345678899999999999999885

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.57  E-value=3.1e-14  Score=114.05  Aligned_cols=101  Identities=13%  Similarity=0.107  Sum_probs=83.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC--CceEEEeCCchHHHHHHhhcccCCCce
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA--HKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ..+|||+|||+|.+++.+++..| ..+|+++|.++.+++.+++|++.++..  .+++++.+|..+.++        .++|
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--------~~~f  299 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PFRF  299 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--------CCCE
Confidence            46999999999999999998876 689999999999999999999887643  378999888764332        4589


Q ss_pred             eEEEEcCC-Cc-------ccHHHHHHHHhcccCCeEEEEe
Q 029836           98 DFVFVDAD-KD-------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        98 D~v~~d~~-~~-------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|+++++ +.       ....+|..+.+.|+|||.+++.
T Consensus       300 DlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        300 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             EEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence            99999876 21       1246788889999999998874

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.57  E-value=6.9e-14  Score=120.76  Aligned_cols=110  Identities=18%  Similarity=0.318  Sum_probs=92.1

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEEEeCCchHHHHHHhhccc
Q 029836           14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      +....++++|||+|||+|.++++++.. + ..+|++||+++.+++.|++|++.+++. .+++++++|..+++...     
T Consensus       533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~-----  605 (702)
T PRK11783        533 IGQMAKGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA-----  605 (702)
T ss_pred             HHHhcCCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-----
Confidence            444557899999999999999999975 2 357999999999999999999999986 58999999999887654     


Q ss_pred             CCCceeEEEEcCCC--------------cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           93 YHGTFDFVFVDADK--------------DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        93 ~~~~~D~v~~d~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                       .++||+|++|++.              ..+..++..+.++|+|||++++...
T Consensus       606 -~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        606 -REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN  657 (702)
T ss_pred             -CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence             4689999999862              1245677888899999999987643

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.57  E-value=9.9e-14  Score=105.95  Aligned_cols=115  Identities=22%  Similarity=0.331  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            5 PDEAQFFSMLLKLI--NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         5 ~~~~~~l~~l~~~~--~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +++..++..++...  ++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...+. .+++++++|..+
T Consensus        71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~  148 (251)
T TIGR03534        71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGL-DNVTFLQSDWFE  148 (251)
T ss_pred             CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhc
Confidence            45556666665544  345999999999999999998876 67999999999999999999998887 479999999876


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCCc-----------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADKD-----------------------------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~~-----------------------------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++        .++||+|+++++..                             .+..+++.+.+.|++||.+++.
T Consensus       149 ~~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~  216 (251)
T TIGR03534       149 PLP--------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE  216 (251)
T ss_pred             cCc--------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            432        46899999976411                             0235678888999999999974

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.57  E-value=1.2e-14  Score=94.43  Aligned_cols=92  Identities=24%  Similarity=0.344  Sum_probs=74.2

Q ss_pred             EEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEc
Q 029836           24 MEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVD  103 (187)
Q Consensus        24 LeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d  103 (187)
                      ||+|||+|..+..+++. + ..+++++|+++++++.++++...    .++.+.++|..++ +-.      +++||+|++.
T Consensus         1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~~~------~~sfD~v~~~   67 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDL-PFP------DNSFDVVFSN   67 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSS-SS-------TT-EEEEEEE
T ss_pred             CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhC-ccc------cccccccccc
Confidence            89999999999999987 3 78999999999999999987765    3556888988765 211      6799999987


Q ss_pred             CC---CcccHHHHHHHHhcccCCeEEEE
Q 029836          104 AD---KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus       104 ~~---~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..   .++...+++++.+.|||||++++
T Consensus        68 ~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   68 SVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            64   35678899999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.56  E-value=1.1e-13  Score=108.04  Aligned_cols=116  Identities=17%  Similarity=0.202  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            6 DEAQFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         6 ~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      .+...+..+... .++++|||+|||+|..+..+++. + ..+++++|+++.+++.+++++..+++..++.+..++.... 
T Consensus       145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-  221 (288)
T TIGR00406       145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-  221 (288)
T ss_pred             HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-
Confidence            333334444332 35689999999999999887764 3 4699999999999999999999998877777777663211 


Q ss_pred             HHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           85 DQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                        .      .++||+|+++........++..+.+.|+|||++++..+.
T Consensus       222 --~------~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       222 --I------EGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             --c------CCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence              1      468999999876666678889999999999999987654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.56  E-value=6.2e-14  Score=106.14  Aligned_cols=116  Identities=21%  Similarity=0.302  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH-H
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP-L   83 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~   83 (187)
                      |.-..++-..+...++.+|||.|+|+|..+.+++..+.+.++|+..|..++.++.|+++++..++..++++.+.|..+ -
T Consensus        26 pkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g  105 (247)
T PF08704_consen   26 PKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG  105 (247)
T ss_dssp             HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred             CchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence            444556666677889999999999999999999998877899999999999999999999999998899999999863 2


Q ss_pred             HH-HHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcc-cCCeEEEE
Q 029836           84 LD-QLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV-KVGGVIGY  128 (187)
Q Consensus        84 l~-~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L-~~gG~lv~  128 (187)
                      ++ .+      +..+|.||+|.+  +.-..+..+.+.| ++||.+++
T Consensus       106 ~~~~~------~~~~DavfLDlp--~Pw~~i~~~~~~L~~~gG~i~~  144 (247)
T PF08704_consen  106 FDEEL------ESDFDAVFLDLP--DPWEAIPHAKRALKKPGGRICC  144 (247)
T ss_dssp             -STT-------TTSEEEEEEESS--SGGGGHHHHHHHE-EEEEEEEE
T ss_pred             ccccc------cCcccEEEEeCC--CHHHHHHHHHHHHhcCCceEEE
Confidence            21 11      468999999975  2234466777788 89999985

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.56  E-value=1.2e-13  Score=108.75  Aligned_cols=114  Identities=18%  Similarity=0.315  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      |.....+...+...+..+|||||||+|..+..+++..+..++|+++|+++++++.|+++++..+. +++.++++|+.+..
T Consensus        66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~  144 (322)
T PRK13943         66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGV  144 (322)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcc
Confidence            33333333334455678999999999999999998775446899999999999999999999887 67999999986554


Q ss_pred             HHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           85 DQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.       ..+||+|+++.....   ..+.+.+.|++||.+++.
T Consensus       145 ~~-------~~~fD~Ii~~~g~~~---ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        145 PE-------FAPYDVIFVTVGVDE---VPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             cc-------cCCccEEEECCchHH---hHHHHHHhcCCCCEEEEE
Confidence            32       357999999865333   234567789999998773

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=99.56  E-value=3.1e-13  Score=104.27  Aligned_cols=106  Identities=16%  Similarity=0.188  Sum_probs=91.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC--C-CCceEEEeCCchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG--V-AHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      +.++++||.||.|.|..+.++++..+ -.+++.||+++..++.+++.+....  . .+|++++.+|+.++++..      
T Consensus        74 h~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------  146 (282)
T COG0421          74 HPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------  146 (282)
T ss_pred             CCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------
Confidence            45568999999999999999999865 6899999999999999999998764  2 389999999999999876      


Q ss_pred             CCceeEEEEcCC-Cc------ccHHHHHHHHhcccCCeEEEEe
Q 029836           94 HGTFDFVFVDAD-KD------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        94 ~~~~D~v~~d~~-~~------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++||+|++|.. +.      ...+|++.|.+.|+++|+++..
T Consensus       147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            458999999975 21      2478999999999999999975

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.55  E-value=8.6e-14  Score=115.97  Aligned_cols=101  Identities=19%  Similarity=0.290  Sum_probs=82.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      +.+|||+|||+|.+++.++..++ +.+++++|+++.+++.|++|+..+++.++++++++|..+.++        .++||+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDl  209 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDF  209 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccE
Confidence            46899999999999999998876 689999999999999999999998887789999999765432        358999


Q ss_pred             EEEcCCC-----------------------------cccHHHHHHHHhcccCCeEEEEe
Q 029836          100 VFVDADK-----------------------------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus       100 v~~d~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+++++.                             ..+..+++.+.+.|+|||.+++.
T Consensus       210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            9997640                             01234556677899999999874

>PRK04266 fibrillarin; Provisional

Probab=99.55  E-value=8.5e-14  Score=104.66  Aligned_cols=105  Identities=11%  Similarity=0.131  Sum_probs=82.1

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH--HHHhhccc
Q 029836           15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL--DQLIQDEK   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l--~~~~~~~~   92 (187)
                      +...+..+|||+|||+|.++..+++..+ .++|+++|+++++++.+.++.+..   +++.++.+|+.+..  ..+     
T Consensus        68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l-----  138 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV-----  138 (226)
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc-----
Confidence            4445678999999999999999999876 689999999999999887776543   57899999986421  112     


Q ss_pred             CCCceeEEEEcCCCc-ccHHHHHHHHhcccCCeEEEEe
Q 029836           93 YHGTFDFVFVDADKD-NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~-~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       .++||+|+.+.... ....+++.+.+.|||||.+++.
T Consensus       139 -~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        139 -VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             -cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence             35699999886522 2344678999999999999984

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.54  E-value=2.2e-13  Score=99.19  Aligned_cols=108  Identities=19%  Similarity=0.182  Sum_probs=85.9

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      .+|...+...++++|||+|||+|.++..++...   .+++++|+++.+++.++++++..+.  ++++..+|..+..    
T Consensus         9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~----   79 (179)
T TIGR00537         9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV----   79 (179)
T ss_pred             HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc----
Confidence            455555566778899999999999999988753   3899999999999999999988775  5888888876532    


Q ss_pred             hcccCCCceeEEEEcCCCc------------------------ccHHHHHHHHhcccCCeEEEEeC
Q 029836           89 QDEKYHGTFDFVFVDADKD------------------------NYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                           .++||+|+.+.+..                        .+..+++.+.++|+|||.+++..
T Consensus        80 -----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537        80 -----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ  140 (179)
T ss_pred             -----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence                 35899999886410                        03567888899999999988743

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.53  E-value=6.6e-13  Score=97.36  Aligned_cols=115  Identities=10%  Similarity=0.009  Sum_probs=89.2

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh
Q 029836           10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ   89 (187)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~   89 (187)
                      ++..+....+..++||++||+|..+++++...  ..+|+++|.++.+++.+++|++.++...+++++.+|..+.+..+..
T Consensus        40 ~f~~l~~~~~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~  117 (189)
T TIGR00095        40 FFNILRPEIQGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK  117 (189)
T ss_pred             HHHHHHHhcCCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc
Confidence            33333334568899999999999999998763  3589999999999999999999999877899999999887765421


Q ss_pred             cccCCCceeEEEEcCCC--cccHHHHHHHH--hcccCCeEEEEe
Q 029836           90 DEKYHGTFDFVFVDADK--DNYVNYHKRLI--ELVKVGGVIGYD  129 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~~--~~~~~~~~~~~--~~L~~gG~lv~~  129 (187)
                      .   ...+|+||.|++.  ..+...++.+.  .+|+++|++++.
T Consensus       118 ~---~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E  158 (189)
T TIGR00095       118 K---PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE  158 (189)
T ss_pred             c---CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence            1   2248999999973  33455565554  479999999975

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.53  E-value=1.6e-13  Score=107.04  Aligned_cols=100  Identities=18%  Similarity=0.212  Sum_probs=81.6

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++.+|||+|||+|..+.++++.   +.+|+++|+++.+++.++++.+..++  ++++...|..+..  +      .+
T Consensus       117 ~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~------~~  183 (287)
T PRK12335        117 QTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--I------QE  183 (287)
T ss_pred             hccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--c------cC
Confidence            3456789999999999999999874   57999999999999999999988877  6888887775421  1      46


Q ss_pred             ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836           96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +||+|++...     .+....+++.+.+.|+|||++++
T Consensus       184 ~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        184 EYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             CccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            8999987643     24567889999999999999655

>PRK08317 hypothetical protein; Provisional

Probab=99.53  E-value=3.2e-13  Score=102.06  Aligned_cols=120  Identities=18%  Similarity=0.244  Sum_probs=92.7

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836            8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      ...+...+...++.+|||+|||+|.++..++..+++.++++++|+++.+++.++++..  ....++++..+|..+..  +
T Consensus         8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~--~   83 (241)
T PRK08317          8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP--F   83 (241)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC--C
Confidence            3444445556677899999999999999999887446899999999999999988733  23367899998875431  1


Q ss_pred             hhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCcc
Q 029836           88 IQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGGS  136 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~  136 (187)
                      .     .++||+|+....   ..+...+++.+.++|+|||.+++.+..+...
T Consensus        84 ~-----~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  130 (241)
T PRK08317         84 P-----DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTL  130 (241)
T ss_pred             C-----CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCce
Confidence            1     468999998754   3456789999999999999999987665443

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.53  E-value=3.9e-13  Score=102.78  Aligned_cols=115  Identities=16%  Similarity=0.092  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHhhc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            5 PDEAQFFSMLLKLI----NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         5 ~~~~~~l~~l~~~~----~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      +++..++.......    .+.++||+|||+|..++.++...+ +.+++++|+++.+++.|++|++.++    .+++++|.
T Consensus        68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~  142 (251)
T TIGR03704        68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDL  142 (251)
T ss_pred             ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeec
Confidence            34555555554432    235899999999999999998765 5799999999999999999998765    47888998


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcc-----------------------------cHHHHHHHHhcccCCeEEEEe
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDN-----------------------------YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~-----------------------------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+.++...     .++||+|++|++...                             +..+++.+.++|++||.+++.
T Consensus       143 ~~~l~~~~-----~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~  215 (251)
T TIGR03704       143 YDALPTAL-----RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE  215 (251)
T ss_pred             hhhcchhc-----CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            76554321     357999999975110                             235666777999999999864

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.52  E-value=3.6e-13  Score=98.13  Aligned_cols=119  Identities=18%  Similarity=0.256  Sum_probs=90.7

Q ss_pred             HHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            7 EAQFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         7 ~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      ...+++.|-.. ....++||+-||+|..+++.++..  ..+|+.||.++..+...++|++..+..++++++.+|+...+.
T Consensus        29 realFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~  106 (183)
T PF03602_consen   29 REALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLL  106 (183)
T ss_dssp             HHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHH
T ss_pred             HHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHH
Confidence            34555566556 788999999999999999987652  479999999999999999999999998889999999988887


Q ss_pred             HHhhcccCCCceeEEEEcCCC--cc-cHHHHHHHH--hcccCCeEEEEeC
Q 029836           86 QLIQDEKYHGTFDFVFVDADK--DN-YVNYHKRLI--ELVKVGGVIGYDN  130 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~~--~~-~~~~~~~~~--~~L~~gG~lv~~~  130 (187)
                      +....   ..+||+||+|++.  .. +...++.+.  .+|+++|++++..
T Consensus       107 ~~~~~---~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~  153 (183)
T PF03602_consen  107 KLAKK---GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH  153 (183)
T ss_dssp             HHHHC---TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             hhccc---CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence            66332   5799999999983  33 366777776  7999999999743

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.52  E-value=8.6e-14  Score=107.20  Aligned_cols=106  Identities=15%  Similarity=0.186  Sum_probs=84.1

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...+..+|||||||+|..+..++...  +.+|+++|+++.+++.++++...   .+++.+..+|+.+. + +.     ++
T Consensus        49 ~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~-~~-----~~  116 (263)
T PTZ00098         49 ELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-D-FP-----EN  116 (263)
T ss_pred             CCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-C-CC-----CC
Confidence            34567899999999999999988754  47999999999999999987654   35799999988642 1 10     46


Q ss_pred             ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +||+|++...     ..+...+++.+.++|||||.+++.+...
T Consensus       117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098        117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA  159 (263)
T ss_pred             CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            8999998432     2366789999999999999999987654

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.52  E-value=2.8e-13  Score=98.77  Aligned_cols=114  Identities=17%  Similarity=0.193  Sum_probs=84.2

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      ++...++++. +...++.++||+|||.|..+++|++.   +..|+++|.++..++.+++..++.++  .++....|..+.
T Consensus        16 ~~~hs~v~~a-~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~   89 (192)
T PF03848_consen   16 TPTHSEVLEA-VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDF   89 (192)
T ss_dssp             ----HHHHHH-CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCB
T ss_pred             CCCcHHHHHH-HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhc
Confidence            3444455543 46678899999999999999999986   68999999999999999988888777  388888887654


Q ss_pred             HHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           84 LDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..        .+.||+|+....     ++..+..++.+...++|||++++...
T Consensus        90 ~~--------~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   90 DF--------PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             S---------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cc--------cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            22        468999986422     55667889999999999999887443

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=2.8e-13  Score=104.99  Aligned_cols=115  Identities=21%  Similarity=0.384  Sum_probs=89.6

Q ss_pred             CHHHHHHHHHHH-hhcC-CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            4 SPDEAQFFSMLL-KLIN-AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         4 ~~~~~~~l~~l~-~~~~-~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      .+++..++..+. .... +.+|||+|||+|..++.++...+ ..+|+++|+|+.+++.|++|...+++ .++.++++|..
T Consensus        93 r~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf  170 (280)
T COG2890          93 RPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLF  170 (280)
T ss_pred             CCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecc
Confidence            467777777754 1222 22799999999999999999877 68999999999999999999999998 67777777554


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC--C-c-------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD--K-D-------------------------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~--~-~-------------------------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                         ..+      .++||+|+.+++  + +                         .+..++..+...|++||++++.
T Consensus       171 ---~~~------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le  237 (280)
T COG2890         171 ---EPL------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE  237 (280)
T ss_pred             ---ccc------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence               333      458999999876  1 1                         1245666777899999999874

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.51  E-value=2.7e-13  Score=109.11  Aligned_cols=116  Identities=16%  Similarity=0.262  Sum_probs=90.4

Q ss_pred             CHHHHHHHHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLI-NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~-~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      .|++..++..+.... +..++||+|||+|..++.++...+ +.+++++|+|+++++.|++|++..+.  +++++++|..+
T Consensus       235 RpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e  311 (423)
T PRK14966        235 RPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFD  311 (423)
T ss_pred             CccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhc
Confidence            567778888776543 457999999999999999988765 68999999999999999999998764  79999999865


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCC--c--------------------------ccHHHHHHHHhcccCCeEEEE
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADK--D--------------------------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~--~--------------------------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .....      .++||+|+++++.  .                          .+..+++.+.+.|+|||.+++
T Consensus       312 ~~l~~------~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil  379 (423)
T PRK14966        312 TDMPS------EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL  379 (423)
T ss_pred             ccccc------CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence            31111      3579999998761  0                          123455666689999999876

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.51  E-value=3.8e-13  Score=103.86  Aligned_cols=111  Identities=22%  Similarity=0.356  Sum_probs=86.7

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEEEeCCchHHHHHHhhccc
Q 029836           14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      +....+.++||++-|++|.+++..+..-  ..+|++||.|..+++.+++|++.+++. .+++++++|..+++..+..   
T Consensus       118 v~~~~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~---  192 (286)
T PF10672_consen  118 VRKYAKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK---  192 (286)
T ss_dssp             HHHHCTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH---
T ss_pred             HHHHcCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc---
Confidence            3445678999999999999999877642  368999999999999999999999986 6899999999998877543   


Q ss_pred             CCCceeEEEEcCC---------CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           93 YHGTFDFVFVDAD---------KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        93 ~~~~~D~v~~d~~---------~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                       .++||+|++|++         ..+|...+..+.++|+|||+|++..
T Consensus       193 -~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s  238 (286)
T PF10672_consen  193 -GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS  238 (286)
T ss_dssp             -TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence             469999999987         2356778888899999999987643

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.51  E-value=3.1e-13  Score=106.81  Aligned_cols=108  Identities=15%  Similarity=0.185  Sum_probs=82.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++++|||||||+|+.+..++...+  .+|+++|+++.++..++..-+..+...++++..++..+. +.       .++|
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-------~~~F  190 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-------LKAF  190 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-------cCCc
Confidence            4678999999999999999988643  579999999988876544333333345899999988654 21       3589


Q ss_pred             eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      |+|++-+.   ..+...+++.+.+.|+|||.++++.....+
T Consensus       191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~  231 (322)
T PRK15068        191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDG  231 (322)
T ss_pred             CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence            99998654   355678999999999999999998655443

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=99.51  E-value=5.1e-13  Score=101.78  Aligned_cols=108  Identities=16%  Similarity=0.101  Sum_probs=87.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC---CCceEEEeCCchHHHHHHhhccc
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV---AHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      ...++++||-||.|.|..+.++++.. +..+++.||+++..++.+++.+.....   .+|++++.+|+..++.+.     
T Consensus        73 ~~~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-----  146 (246)
T PF01564_consen   73 LHPNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-----  146 (246)
T ss_dssp             HSSST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-----
T ss_pred             cCCCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-----
Confidence            34579999999999999999998763 357999999999999999999886432   379999999999998876     


Q ss_pred             CCC-ceeEEEEcCCC-------cccHHHHHHHHhcccCCeEEEEeC
Q 029836           93 YHG-TFDFVFVDADK-------DNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        93 ~~~-~~D~v~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                       .+ +||+|++|...       -...++++.+.+.|+|||+++...
T Consensus       147 -~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  147 -QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             -SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence             45 89999999752       124789999999999999999753

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.51  E-value=4.8e-13  Score=106.98  Aligned_cols=103  Identities=22%  Similarity=0.294  Sum_probs=86.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ....+||||||+|..+..+|...| +..++|+|+++.+++.+.+++...++ .++.++++|+..++..+.     ++++|
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~-----~~s~D  194 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLP-----SNSVE  194 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCC-----CCcee
Confidence            346899999999999999999876 78999999999999999999999888 679999999977654442     57899


Q ss_pred             EEEEcCC----Ccc-----cHHHHHHHHhcccCCeEEEE
Q 029836           99 FVFVDAD----KDN-----YVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        99 ~v~~d~~----~~~-----~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|++..+    +..     ...+++.+.+.|++||.+.+
T Consensus       195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l  233 (390)
T PRK14121        195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL  233 (390)
T ss_pred             EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence            9987532    111     26789999999999999876

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.51  E-value=3.3e-13  Score=106.21  Aligned_cols=109  Identities=15%  Similarity=0.045  Sum_probs=89.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...+..++||||||+|..+..+++..| +.+++++|. +.+++.+++++++.++.++++++.+|+.+..         .+
T Consensus       146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~---------~~  214 (306)
T TIGR02716       146 KLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES---------YP  214 (306)
T ss_pred             CCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC---------CC
Confidence            344668999999999999999999987 689999998 7899999999999999889999999986421         12


Q ss_pred             ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      .+|+|++...     .+.....++++.+.|+|||.+++.|..+..
T Consensus       215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~  259 (306)
T TIGR02716       215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD  259 (306)
T ss_pred             CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            4698876542     233457899999999999999998876643

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.51  E-value=1e-12  Score=103.82  Aligned_cols=101  Identities=10%  Similarity=0.058  Sum_probs=81.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..++.+++.   +.+|+++|.++.+++.|+++++.+++ ++++++++|+.++....      .++|
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~  241 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GEVP  241 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CCCC
Confidence            35789999999999999999974   47999999999999999999999998 68999999998765432      3579


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+|++|+++......+......+++++++.+
T Consensus       242 D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyv  272 (315)
T PRK03522        242 DLVLVNPPRRGIGKELCDYLSQMAPRFILYS  272 (315)
T ss_pred             eEEEECCCCCCccHHHHHHHHHcCCCeEEEE
Confidence            9999999866544334334445678777765

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.50  E-value=4.8e-13  Score=101.27  Aligned_cols=107  Identities=19%  Similarity=0.263  Sum_probs=87.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||.|..+..++..++...+++++|+++.+++.+++++...+...++.++.+|+.+...       ..++|
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~  122 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-------PDNSF  122 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC-------CCCCc
Confidence            34679999999999999999988754589999999999999999998876666789999998865421       14689


Q ss_pred             eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |+|++...   ..+....++.+.+.|++||.+++.+.
T Consensus       123 D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        123 DAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             cEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence            99987643   34577889999999999999987654

>PRK14968 putative methyltransferase; Provisional

Probab=99.50  E-value=8.3e-13  Score=96.53  Aligned_cols=108  Identities=13%  Similarity=0.131  Sum_probs=84.6

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCc-eEEEeCCchHHHHHHhh
Q 029836           11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK-IDFREGPALPLLDQLIQ   89 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~l~~~~~   89 (187)
                      +...+...+.+++||+|||+|.++..++..   +.+++++|.++++++.++++++..+..++ +.++++|..+.+.    
T Consensus        15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----   87 (188)
T PRK14968         15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR----   87 (188)
T ss_pred             HHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc----
Confidence            333344467789999999999999999876   57999999999999999999998887543 8889988765432    


Q ss_pred             cccCCCceeEEEEcCCCc------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029836           90 DEKYHGTFDFVFVDADKD------------------------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                          ..+||+|+.+++..                        ....+++.+.+.|+|||.+++.
T Consensus        88 ----~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~  147 (188)
T PRK14968         88 ----GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL  147 (188)
T ss_pred             ----ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                34799999875411                        1345788999999999988763

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.50  E-value=4.4e-13  Score=103.84  Aligned_cols=114  Identities=23%  Similarity=0.364  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            5 PDEAQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         5 ~~~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      +++..++..+..   ..++.+|||+|||+|..+..++..++ ..+++++|+++.+++.+++++. .....+++++++|..
T Consensus        91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~  168 (275)
T PRK09328         91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWF  168 (275)
T ss_pred             CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEcccc
Confidence            445555665542   34567999999999999999998876 6899999999999999999998 334468999999885


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCCC-----------------------------cccHHHHHHHHhcccCCeEEEE
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDADK-----------------------------DNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +.++        .++||+|+.+++.                             ..+..+++.+.++|++||++++
T Consensus       169 ~~~~--------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~  236 (275)
T PRK09328        169 EPLP--------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL  236 (275)
T ss_pred             CcCC--------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence            4332        3689999987541                             1124566777799999999997

>PRK14967 putative methyltransferase; Provisional

Probab=99.50  E-value=8.6e-13  Score=99.33  Aligned_cols=99  Identities=20%  Similarity=0.222  Sum_probs=79.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+..+|||+|||+|..+..++.. + ..+++++|+++.+++.+++++...+.  +++++++|..+.++        .++|
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~~f  102 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FRPF  102 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CCCe
Confidence            34579999999999999998875 3 35999999999999999999988775  58888888865432        4689


Q ss_pred             eEEEEcCCCc------------------------ccHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDADKD------------------------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+|+++++..                        .+..+++.+.++|++||.+++
T Consensus       103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~  157 (223)
T PRK14967        103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL  157 (223)
T ss_pred             eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            9999985411                        034567788899999999986

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.50  E-value=7.2e-15  Score=96.72  Aligned_cols=96  Identities=23%  Similarity=0.324  Sum_probs=62.9

Q ss_pred             EEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEc
Q 029836           24 MEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVD  103 (187)
Q Consensus        24 LeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d  103 (187)
                      ||||||+|..+..++..++ ..+++++|+|+.+++.+++++...... +......+..+......     .++||+|++.
T Consensus         1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~fD~V~~~   73 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDP-----PESFDLVVAS   73 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC---------SEEEEE
T ss_pred             CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhccc-----ccccceehhh
Confidence            7999999999999999885 799999999999999999999887652 33333333333222110     2489999987


Q ss_pred             CC---CcccHHHHHHHHhcccCCeEE
Q 029836          104 AD---KDNYVNYHKRLIELVKVGGVI  126 (187)
Q Consensus       104 ~~---~~~~~~~~~~~~~~L~~gG~l  126 (187)
                      ..   .++...+++.+.++|+|||+|
T Consensus        74 ~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   74 NVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            54   456788999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.49  E-value=3.7e-13  Score=99.87  Aligned_cols=104  Identities=19%  Similarity=0.239  Sum_probs=78.9

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++.+|||+|||+|..+..++..++ ..+++++|+++++++.|++++      +++.+.++|+.+..+        ++
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~~~~--------~~  104 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFDPFK--------DN  104 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccCCCC--------CC
Confidence            445677999999999999999988765 689999999999999998764      356778888765221        57


Q ss_pred             ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCCcc
Q 029836           96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWGGS  136 (187)
Q Consensus        96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~  136 (187)
                      +||+|++...     ++....+++++.+.+  ++++++.+..-...
T Consensus       105 sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~~  148 (204)
T TIGR03587       105 FFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPSP  148 (204)
T ss_pred             CEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCCc
Confidence            8999998764     233466777777776  56777777654433

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK06922 hypothetical protein; Provisional

Probab=99.49  E-value=5.8e-13  Score=111.91  Aligned_cols=113  Identities=18%  Similarity=0.232  Sum_probs=88.1

Q ss_pred             HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcc
Q 029836           12 SMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDE   91 (187)
Q Consensus        12 ~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~   91 (187)
                      ..+....++.+|||+|||+|..+..+++..+ +.+++++|+++.+++.|+++....+  .++.++++|+.+....+.   
T Consensus       411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fe---  484 (677)
T PRK06922        411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFE---  484 (677)
T ss_pred             HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccC---
Confidence            3445556788999999999999999988776 7899999999999999998876554  368889999876321121   


Q ss_pred             cCCCceeEEEEcCC----------------CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           92 KYHGTFDFVFVDAD----------------KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        92 ~~~~~~D~v~~d~~----------------~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                        +++||+|+....                ......+++.+.+.|||||.+++.+..
T Consensus       485 --deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v  539 (677)
T PRK06922        485 --KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI  539 (677)
T ss_pred             --CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence              568999987531                124567889999999999999987643

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.48  E-value=4e-13  Score=111.67  Aligned_cols=113  Identities=14%  Similarity=0.228  Sum_probs=88.1

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      .++..+ ...++.+|||||||+|..+..+++..  +.+++++|+++.+++.|+++..  +...++++.++|..+..  +.
T Consensus       257 ~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--~~  329 (475)
T PLN02336        257 EFVDKL-DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--YP  329 (475)
T ss_pred             HHHHhc-CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--CC
Confidence            344433 23456799999999999999998865  4799999999999999998775  33357999999986531  10


Q ss_pred             hcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           89 QDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                           +++||+|++...   ..+...+++.+.+.|+|||.+++.+...
T Consensus       330 -----~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        330 -----DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             -----CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence                 468999998654   3456789999999999999999987643

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.48  E-value=2e-13  Score=98.76  Aligned_cols=97  Identities=15%  Similarity=0.300  Sum_probs=74.8

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v  100 (187)
                      .++||+|||.|..+..|+..   +.+++++|+++.+++.|++++...   +++++.+.+..++.|        .++||+|
T Consensus        45 ~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P--------~~~FDLI  110 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWP--------EGRFDLI  110 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT-----------SS-EEEE
T ss_pred             ceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCC--------CCCeeEE
Confidence            59999999999999999876   578999999999999999988653   689999999987766        6899999


Q ss_pred             EEcCC------CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836          101 FVDAD------KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus       101 ~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ++...      .+....+++.+...|+|||.+|+-.+
T Consensus       111 V~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  111 VLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             EEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            98753      13455678888999999999998543

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.48  E-value=6.7e-13  Score=105.42  Aligned_cols=116  Identities=19%  Similarity=0.206  Sum_probs=91.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +.|.....+..++...++.++||.|||+|..+..++..   +.+++++|+++.+++.+++|++..++.+ +++.++|+.+
T Consensus       166 l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~  241 (329)
T TIGR01177       166 MDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATK  241 (329)
T ss_pred             CCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhc
Confidence            34555566666666667789999999999998886653   5789999999999999999999999854 8899999876


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCC-------c-----ccHHHHHHHHhcccCCeEEEEe
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADK-------D-----NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~-------~-----~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      . +..      .++||+|+.|++.       .     .+..+++.+.+.|+|||.+++.
T Consensus       242 l-~~~------~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~  293 (329)
T TIGR01177       242 L-PLS------SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA  293 (329)
T ss_pred             C-Ccc------cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence            3 211      4689999999751       1     1467888999999999998863

This family is found exclusively in the Archaea.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=99.48  E-value=3.7e-13  Score=98.54  Aligned_cols=161  Identities=18%  Similarity=0.174  Sum_probs=92.0

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh---CCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALA---IPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~---~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      .|.-.-.++.|+...+|+.|+|+|+..|++++++|+.   +...++|++||++.....  ++.++...+.++|++++||+
T Consensus        17 ~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds   94 (206)
T PF04989_consen   17 YPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDS   94 (206)
T ss_dssp             -HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-S
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCC
Confidence            4667778899999999999999999999999998754   334689999999755432  22344455568999999998


Q ss_pred             hHH--HHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHH
Q 029836           81 LPL--LDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFV  156 (187)
Q Consensus        81 ~~~--l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (187)
                      .+.  +.+..... ......+|+.|++  +.+....|+...+++++|+++|+.|..+............-...+...+.+
T Consensus        95 ~d~~~~~~v~~~~-~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av  173 (206)
T PF04989_consen   95 IDPEIVDQVRELA-SPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAV  173 (206)
T ss_dssp             SSTHHHHTSGSS-----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHH
T ss_pred             CCHHHHHHHHHhh-ccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHH
Confidence            653  33221110 0245678999887  577888999999999999999999887765544322111000112234444


Q ss_pred             HHHHHHHhcCCCee
Q 029836          157 QELNKALAVDPRIE  170 (187)
Q Consensus       157 ~~~~~~~~~~~~~~  170 (187)
                      .   +.++.+++|+
T Consensus       174 ~---~fL~~~~~f~  184 (206)
T PF04989_consen  174 K---EFLAEHPDFE  184 (206)
T ss_dssp             H---HHHHTTTTEE
T ss_pred             H---HHHHHCCCcE
Confidence            4   4477787754

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.48  E-value=3.8e-13  Score=102.93  Aligned_cols=98  Identities=17%  Similarity=0.258  Sum_probs=77.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..++..   +.+++++|+++.+++.++++..      ...++++|..+. + +.     +++||
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~-~~-----~~~fD  105 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-P-LA-----TATFD  105 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-c-CC-----CCcEE
Confidence            4679999999999998888763   5799999999999999887642      346778888653 2 11     56899


Q ss_pred             EEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           99 FVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        99 ~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|+....   ..+....+.++.+.|+|||.+++....
T Consensus       106 ~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~  142 (251)
T PRK10258        106 LAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV  142 (251)
T ss_pred             EEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            9998754   356778899999999999999987544

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.47  E-value=5.6e-13  Score=106.00  Aligned_cols=109  Identities=14%  Similarity=0.226  Sum_probs=84.5

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      +..++..+.. ....+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++.+++  ..+++.+|..+.   
T Consensus       185 t~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~---  257 (342)
T PRK09489        185 SQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD---  257 (342)
T ss_pred             HHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc---
Confidence            3444444432 3346899999999999999998765 67999999999999999999999876  356777776432   


Q ss_pred             HhhcccCCCceeEEEEcCC-C-------cccHHHHHHHHhcccCCeEEEE
Q 029836           87 LIQDEKYHGTFDFVFVDAD-K-------DNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~-~-------~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .      .++||+|+++++ +       .....++..+.+.|+|||.+++
T Consensus       258 ~------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i  301 (342)
T PRK09489        258 I------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI  301 (342)
T ss_pred             c------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence            2      468999999875 2       1246788999999999998865

>PRK03612 spermidine synthase; Provisional

Probab=99.47  E-value=6e-13  Score=111.43  Aligned_cols=107  Identities=16%  Similarity=0.231  Sum_probs=85.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHH--HHHcC---C-CCceEEEeCCchHHHHHHhhc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI--IQKAG---V-AHKIDFREGPALPLLDQLIQD   90 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~--~~~~~---~-~~~i~~~~~d~~~~l~~~~~~   90 (187)
                      ..++++||+||||+|..+.++++. +...+++++|+++++++.++++  +...+   . .++++++.+|+.+++...   
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---  370 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---  370 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence            457899999999999999999875 4237999999999999999984  33221   1 368999999999887654   


Q ss_pred             ccCCCceeEEEEcCCCc--------ccHHHHHHHHhcccCCeEEEEeC
Q 029836           91 EKYHGTFDFVFVDADKD--------NYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                         .++||+|++|....        ...++++.+.+.|+|||++++..
T Consensus       371 ---~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        371 ---AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             ---CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence               56899999996521        12468999999999999999753

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=7.4e-13  Score=101.71  Aligned_cols=110  Identities=15%  Similarity=0.207  Sum_probs=86.8

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      +.-+++.|-..... +|||+|||.|.+++.+++..| ..+++.+|++..+++.+++|++.++.. +..++..|..+..  
T Consensus       147 S~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~v--  221 (300)
T COG2813         147 SRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEPV--  221 (300)
T ss_pred             HHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEecccccc--
Confidence            34455555444334 999999999999999999987 799999999999999999999999884 3367777665443  


Q ss_pred             HhhcccCCCceeEEEEcCC-C---cccH----HHHHHHHhcccCCeEEEE
Q 029836           87 LIQDEKYHGTFDFVFVDAD-K---DNYV----NYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~-~---~~~~----~~~~~~~~~L~~gG~lv~  128 (187)
                             .++||+|+.+++ +   +...    +++..+.+.|++||-|.+
T Consensus       222 -------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i  264 (300)
T COG2813         222 -------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI  264 (300)
T ss_pred             -------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence                   348999999987 2   2233    788888999999997754

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.46  E-value=8.7e-13  Score=99.78  Aligned_cols=103  Identities=21%  Similarity=0.311  Sum_probs=82.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|.++..+++..+ ..+++++|+++.+++.+++.+.     +++.++.+|..+... .      .++|
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~-~------~~~f   99 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPL-E------DSSF   99 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCC-C------CCce
Confidence            3457999999999999999998876 6789999999999988887653     378889998865421 1      5689


Q ss_pred             eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      |+|++...   ..+....++.+.++|+|||.+++.....
T Consensus       100 D~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~  138 (240)
T TIGR02072       100 DLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP  138 (240)
T ss_pred             eEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            99998754   3456789999999999999999875443

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00452 methyltransferase, putative

Probab=99.46  E-value=1.3e-12  Score=102.56  Aligned_cols=109  Identities=13%  Similarity=0.117  Sum_probs=80.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++++|||+|||+|+.+..++...  ...|+++|+++.++..++..-+..+...++.+..++..+...        ..+
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~--------~~~  188 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHG--AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE--------LYA  188 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC--------CCC
Confidence            3456899999999999988887653  258999999999887654333322333578888887754421        348


Q ss_pred             eeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           97 FDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        97 ~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      ||+|++.+.   ..+...++.++.+.|+|||.|++......+
T Consensus       189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g  230 (314)
T TIGR00452       189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG  230 (314)
T ss_pred             cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence            999998764   345678999999999999999987655443

Known examples to date are restricted to the proteobacteria.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.45  E-value=4e-12  Score=102.53  Aligned_cols=117  Identities=14%  Similarity=0.068  Sum_probs=89.9

Q ss_pred             CCCHHHHHHHHHHH-h---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe
Q 029836            2 MTSPDEAQFFSMLL-K---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE   77 (187)
Q Consensus         2 ~~~~~~~~~l~~l~-~---~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~   77 (187)
                      |+++.+.+-+...+ .   ..++.+|||+|||+|..++.++..   ..+|+++|+++.+++.|++|.+.+++ ++++++.
T Consensus       212 Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~  287 (374)
T TIGR02085       212 QTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGL-DNLSFAA  287 (374)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEE
Confidence            45556655554332 2   235689999999999999999853   47899999999999999999999988 5899999


Q ss_pred             CCchHHHHHHhhcccCCCceeEEEEcCCCcc-cHHHHHHHHhcccCCeEEEEe
Q 029836           78 GPALPLLDQLIQDEKYHGTFDFVFVDADKDN-YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        78 ~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+.+++...      ..+||+|++|++... ....++.+. .++|++++++.
T Consensus       288 ~d~~~~~~~~------~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       288 LDSAKFATAQ------MSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             CCHHHHHHhc------CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence            9998776542      346999999998654 345555554 57888888763

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.45  E-value=2.5e-12  Score=97.31  Aligned_cols=115  Identities=20%  Similarity=0.256  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      ...+++.......++.+|||||||+|..+..+++.   ..+++++|+++..++.+++++...+.  ++++..++..+...
T Consensus        35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~  109 (233)
T PRK05134         35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAA  109 (233)
T ss_pred             HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhh
Confidence            33445555554556789999999999999888864   46899999999999999999887665  57888888866543


Q ss_pred             HHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           86 QLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..      .++||+|++...   ..+....++.+.+.|+|||.+++...
T Consensus       110 ~~------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        110 EH------PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             hc------CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence            22      468999988643   34566788999999999999998653

>PRK00536 speE spermidine synthase; Provisional

Probab=99.45  E-value=2.5e-12  Score=98.16  Aligned_cols=99  Identities=9%  Similarity=0.010  Sum_probs=79.9

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC---CCceEEEeCCchHHHHHHhhcc
Q 029836           15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV---AHKIDFREGPALPLLDQLIQDE   91 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~l~~~~~~~   91 (187)
                      +.+.+|++||-||.|.|..+++++++ +  .+|+.||++++.++.+++.+.....   .+|++++.     .+....   
T Consensus        68 ~~h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~~---  136 (262)
T PRK00536         68 CTKKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-----QLLDLD---  136 (262)
T ss_pred             hhCCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----hhhhcc---
Confidence            34678999999999999999999987 4  4999999999999999997775432   37888875     122210   


Q ss_pred             cCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           92 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                        .++||+|++|..  ...++++.+.+.|+|||+++.
T Consensus       137 --~~~fDVIIvDs~--~~~~fy~~~~~~L~~~Gi~v~  169 (262)
T PRK00536        137 --IKKYDLIICLQE--PDIHKIDGLKRMLKEDGVFIS  169 (262)
T ss_pred             --CCcCCEEEEcCC--CChHHHHHHHHhcCCCcEEEE
Confidence              368999999964  347888999999999999996

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.45  E-value=4.2e-12  Score=104.37  Aligned_cols=103  Identities=14%  Similarity=0.161  Sum_probs=84.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+..+|||+|||+|..++.+++.   ..+|+++|+++.+++.|++|++.+++ .+++++++|+.+.++.....   .++|
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~---~~~~  363 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWA---GQIP  363 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhc---CCCC
Confidence            34579999999999999999975   35899999999999999999999887 68999999998876654211   3579


Q ss_pred             eEEEEcCCCcc-cHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDADKDN-YVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~~~~-~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+|++|++... ...+++.+. .+++++++++
T Consensus       364 D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyv  394 (431)
T TIGR00479       364 DVLLLDPPRKGCAAEVLRTII-ELKPERIVYV  394 (431)
T ss_pred             CEEEECcCCCCCCHHHHHHHH-hcCCCEEEEE
Confidence            99999998655 566777655 4788887765

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.45  E-value=3.5e-12  Score=105.07  Aligned_cols=120  Identities=12%  Similarity=0.127  Sum_probs=90.1

Q ss_pred             CCCHHHHH-HHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe
Q 029836            2 MTSPDEAQ-FFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE   77 (187)
Q Consensus         2 ~~~~~~~~-~l~~l~~---~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~   77 (187)
                      |+++.+.+ ++..++.   ..+..+|||+|||+|..++.+++.   ..+|+++|+++++++.|++|++.++. .++++++
T Consensus       276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~  351 (443)
T PRK13168        276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGL-DNVTFYH  351 (443)
T ss_pred             EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEE
Confidence            34454433 3343433   234579999999999999999876   36899999999999999999999887 5799999


Q ss_pred             CCchHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           78 GPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        78 ~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+.+.++.....   .++||+|++|++.....+.++.+.+ ++++++++++
T Consensus       352 ~d~~~~l~~~~~~---~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        352 ANLEEDFTDQPWA---LGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS  399 (443)
T ss_pred             eChHHhhhhhhhh---cCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence            9998765432110   3579999999987666677765555 6888887763

>PTZ00146 fibrillarin; Provisional

Probab=99.44  E-value=7.7e-12  Score=96.46  Aligned_cols=103  Identities=14%  Similarity=0.095  Sum_probs=77.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH--HHHhhcccCC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL--DQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l--~~~~~~~~~~   94 (187)
                      ..+..+|||+|||+|.++..+++...+.++|++||+++++.+...+..+..   +++.++.+|+....  ...      .
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~------~  200 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRML------V  200 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcc------c
Confidence            345679999999999999999998866689999999987665444433322   57889999986421  111      3


Q ss_pred             CceeEEEEcCCCcc-cHHHHHHHHhcccCCeEEEE
Q 029836           95 GTFDFVFVDADKDN-YVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        95 ~~~D~v~~d~~~~~-~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +++|+||+|....+ ...++.++.+.|||||.+++
T Consensus       201 ~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI  235 (293)
T PTZ00146        201 PMVDVIFADVAQPDQARIVALNAQYFLKNGGHFII  235 (293)
T ss_pred             CCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEE
Confidence            57999999986333 33455678899999999998

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.43  E-value=1.5e-11  Score=90.56  Aligned_cols=101  Identities=27%  Similarity=0.417  Sum_probs=84.2

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEE
Q 029836           22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVF  101 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~  101 (187)
                      .+||||||.|.+...+|...| +..++|+|+....+..+.+.+...++ .|+.++++|+..+++.+.+    ++++|-|+
T Consensus        20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~----~~~v~~i~   93 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFP----PGSVDRIY   93 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHST----TTSEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhccc----CCchheEE
Confidence            889999999999999999987 79999999999999999999999888 7999999999988887753    46899998


Q ss_pred             Ec---CC-Cc-------ccHHHHHHHHhcccCCeEEEE
Q 029836          102 VD---AD-KD-------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus       102 ~d---~~-~~-------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +.   ++ +.       -...+++.+.+.|++||.|.+
T Consensus        94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~  131 (195)
T PF02390_consen   94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF  131 (195)
T ss_dssp             EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred             EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence            75   33 11       247899999999999999876

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.42  E-value=3.3e-12  Score=95.68  Aligned_cols=106  Identities=19%  Similarity=0.268  Sum_probs=85.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||.|..+..+++..+...+++++|+++.+++.+++++.   ...++++..+|..+..  ..     .++
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~--~~-----~~~  106 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP--FE-----DNS  106 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC--CC-----CCc
Confidence            3467899999999999999999887633799999999999999998876   3357899999887542  10     468


Q ss_pred             eeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           97 FDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        97 ~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ||+|++...   ..+...+++.+.+.|+|||.+++.+..
T Consensus       107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            999987543   455678899999999999999986653

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.42  E-value=3.1e-12  Score=103.31  Aligned_cols=101  Identities=17%  Similarity=0.143  Sum_probs=80.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..+++..  +.+|+++|+++++++.++++.+.  .  ++++..+|..+.          .++
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~--l--~v~~~~~D~~~l----------~~~  228 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG--L--PVEIRLQDYRDL----------NGQ  228 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc--C--eEEEEECchhhc----------CCC
Confidence            3466799999999999999999765  47999999999999999998742  2  478888876532          358


Q ss_pred             eeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           97 FDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        97 ~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ||.|+....     ...+..+++.+.++|||||.+++..+..
T Consensus       229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~  270 (383)
T PRK11705        229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS  270 (383)
T ss_pred             CCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence            999986543     2345788999999999999999876543

>TIGR03438 probable methyltransferase

Probab=99.41  E-value=4.8e-12  Score=99.36  Aligned_cols=109  Identities=12%  Similarity=0.075  Sum_probs=79.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..+++.+++..+++++|+|+++++.+++++......-++.++++|..+.++.....  ......
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~~~  140 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGRRL  140 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCCeE
Confidence            457999999999999999999876457899999999999999998876432235777899987644322100  011233


Q ss_pred             EEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe
Q 029836           99 FVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        99 ~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +++.+..     .++...+++.+.+.|+|||.+++.
T Consensus       141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            4444433     344567899999999999999874

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.41  E-value=2e-12  Score=100.09  Aligned_cols=94  Identities=22%  Similarity=0.260  Sum_probs=72.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCC--CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDD--GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      +..+|||+|||+|..+..+++.++..  ..++++|+++.+++.|+++.      +++.+.++|+.+. + +.     +++
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p-~~-----~~s  151 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-P-FA-----DQS  151 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-C-Cc-----CCc
Confidence            44689999999999999998876532  47999999999999987653      4688888887653 2 11     568


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ||+|+....+    ..++++.+.|+|||++++.
T Consensus       152 fD~I~~~~~~----~~~~e~~rvLkpgG~li~~  180 (272)
T PRK11088        152 LDAIIRIYAP----CKAEELARVVKPGGIVITV  180 (272)
T ss_pred             eeEEEEecCC----CCHHHHHhhccCCCEEEEE
Confidence            9999965432    3457788999999999974

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.41  E-value=3e-12  Score=101.32  Aligned_cols=100  Identities=16%  Similarity=0.113  Sum_probs=80.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      +..+|||+|||+|..+..+++.++ ..+++++|.++++++.|+++...    .+++++.+|+.+. +-.      .++||
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p~~------~~sFD  180 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-PFP------TDYAD  180 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-CCC------CCcee
Confidence            457999999999999999988775 57999999999999999987642    4688899998653 211      46899


Q ss_pred             EEEEcCC---CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           99 FVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        99 ~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|++...   ..+....++++.+.|+|||.+++.+
T Consensus       181 vVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             EEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            9998653   2345678999999999999998743

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.41  E-value=1.2e-11  Score=89.27  Aligned_cols=116  Identities=17%  Similarity=0.169  Sum_probs=90.9

Q ss_pred             HHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            8 AQFFSMLLK-LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         8 ~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      ..+++.+.. .....++||+-+|+|..+++.++..  ..+++.||.+...+..+++|++..++..+++++.+|+...++.
T Consensus        31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~  108 (187)
T COG0742          31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQ  108 (187)
T ss_pred             HHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHh
Confidence            445555555 4778899999999999999988753  4799999999999999999999999888999999999977776


Q ss_pred             HhhcccCCCceeEEEEcCCCc--ccHHHHHHH----HhcccCCeEEEEe
Q 029836           87 LIQDEKYHGTFDFVFVDADKD--NYVNYHKRL----IELVKVGGVIGYD  129 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~----~~~L~~gG~lv~~  129 (187)
                      ...    .++||+||+|++..  -........    ...|+|+|++++.
T Consensus       109 ~~~----~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E  153 (187)
T COG0742         109 LGT----REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVE  153 (187)
T ss_pred             cCC----CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence            631    22499999999833  232222222    2679999999975

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.41  E-value=1.9e-12  Score=93.77  Aligned_cols=101  Identities=19%  Similarity=0.217  Sum_probs=80.2

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceE-EEeCCchHHHHHHhhcccCCCcee
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKID-FREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ...+||+|||+|..-.+.--  .+..+|+++|+++.+-+.+.+.+++... .++. |++++.++. ++++     +++||
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l-~~l~-----d~s~D  147 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENL-PQLA-----DGSYD  147 (252)
T ss_pred             ccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcC-cccc-----cCCee
Confidence            34679999999986444221  1478999999999999999999998855 5665 888888544 5443     78999


Q ss_pred             EEEEc---CCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           99 FVFVD---ADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        99 ~v~~d---~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .|+.-   ++.++....+.++.++|||||.+++-
T Consensus       148 tVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  148 TVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI  181 (252)
T ss_pred             eEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            99754   45788899999999999999999873

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.40  E-value=6.8e-12  Score=94.17  Aligned_cols=99  Identities=21%  Similarity=0.268  Sum_probs=79.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..++..   ..+++++|+++++++.|++++...+...++++.++|+.+.          .++|
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~f  120 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGEF  120 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCCc
Confidence            45789999999999999999864   4689999999999999999998877666899999998643          3479


Q ss_pred             eEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe
Q 029836           98 DFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        98 D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++-..     .......+..+.+++++++++.+.
T Consensus       121 D~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       121 DIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             CEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            99986422     233456778888888888777764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.39  E-value=1.3e-11  Score=92.75  Aligned_cols=116  Identities=16%  Similarity=0.199  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            6 DEAQFFSMLLKL----INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         6 ~~~~~l~~l~~~----~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      ...+++...+..    .++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++...+. .++++..+++.
T Consensus        28 ~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~  103 (224)
T TIGR01983        28 LRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVE  103 (224)
T ss_pred             HHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHH
Confidence            334555555543    34789999999999999988875   35699999999999999999887665 36888888887


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +.....      .++||+|++...   ..+...+++.+.+.|++||.+++...
T Consensus       104 ~~~~~~------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       104 DLAEKG------AKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             HhhcCC------CCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            654321      368999998643   45667888999999999999988654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.39  E-value=4.3e-12  Score=94.69  Aligned_cols=101  Identities=17%  Similarity=0.148  Sum_probs=75.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC--------------CCceEEEeCCchHHH
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV--------------AHKIDFREGPALPLL   84 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~l   84 (187)
                      ++.+|||+|||.|..+.++++.   +..|+++|+++.+++.+.+   +.+.              ..+++++++|..+.-
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~  107 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT  107 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence            5579999999999999999975   6899999999999997533   2221              246899999997654


Q ss_pred             HHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           85 DQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +..      .++||.|+-...     ++....+++.+.++|+|||++++...
T Consensus       108 ~~~------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       108 AAD------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             ccc------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            322      346788764322     34456789999999999997655433

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.39  E-value=6.1e-12  Score=89.47  Aligned_cols=106  Identities=25%  Similarity=0.289  Sum_probs=77.1

Q ss_pred             HHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            7 EAQFFSMLLK-LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         7 ~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      ..+++..+.. ..+.++|||+|||.|.++..+++.   +.+++++|+++.+++.           .+......+.... .
T Consensus         9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~-~   73 (161)
T PF13489_consen    9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDP-P   73 (161)
T ss_dssp             HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTH-H
T ss_pred             HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhh-h
Confidence            3456666664 567889999999999999988665   3599999999998876           1222222211111 1


Q ss_pred             HHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           86 QLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ..      .++||+|++...   ..+...+++.+.++|||||++++.....
T Consensus        74 ~~------~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   74 FP------DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             CH------SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             cc------ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            11      679999998765   3457889999999999999999987653

...

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.38  E-value=1e-12  Score=98.43  Aligned_cols=100  Identities=15%  Similarity=0.172  Sum_probs=78.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC-----ceEEEeCCchHHHHHHhhcccCCC
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH-----KIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ++|||+|||.|..+..|++.   +.+|+++|+++.+++.|++........+     ++++.+.+.+..          .+
T Consensus        91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~  157 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TG  157 (282)
T ss_pred             ceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------cc
Confidence            67999999999999999986   6899999999999999999844332222     255555555433          46


Q ss_pred             ceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           96 TFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        96 ~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +||.|++--.   ..+..++++.+.++|+|||.+++..+..
T Consensus       158 ~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  158 KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             ccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence            7999998654   3456788999999999999999987754

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.38  E-value=1e-11  Score=93.55  Aligned_cols=120  Identities=16%  Similarity=0.283  Sum_probs=93.0

Q ss_pred             CHHHHHHHHHHHh------hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe
Q 029836            4 SPDEAQFFSMLLK------LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE   77 (187)
Q Consensus         4 ~~~~~~~l~~l~~------~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~   77 (187)
                      .|++.+++.....      +.++..+||+|||+|.+++.++..++ .++++++|.++.++..|.+|...+++..++.+++
T Consensus       127 RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~  205 (328)
T KOG2904|consen  127 RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH  205 (328)
T ss_pred             CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence            4677888877764      33556899999999999999999998 7999999999999999999999999999998885


Q ss_pred             CCc----hHHHHHHhhcccCCCceeEEEEcCC---Ccc--------------------------cHHHHHHHHhcccCCe
Q 029836           78 GPA----LPLLDQLIQDEKYHGTFDFVFVDAD---KDN--------------------------YVNYHKRLIELVKVGG  124 (187)
Q Consensus        78 ~d~----~~~l~~~~~~~~~~~~~D~v~~d~~---~~~--------------------------~~~~~~~~~~~L~~gG  124 (187)
                      -+.    .+..+..      .+++|+++.+++   .++                          +..++..+-++|++||
T Consensus       206 ~~me~d~~~~~~l~------~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg  279 (328)
T KOG2904|consen  206 NIMESDASDEHPLL------EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGG  279 (328)
T ss_pred             cccccccccccccc------cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCC
Confidence            433    2222222      578999998765   111                          1234555568999999


Q ss_pred             EEEEeC
Q 029836          125 VIGYDN  130 (187)
Q Consensus       125 ~lv~~~  130 (187)
                      .+.+.-
T Consensus       280 ~~~le~  285 (328)
T KOG2904|consen  280 FEQLEL  285 (328)
T ss_pred             eEEEEe
Confidence            998753

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.37  E-value=2.1e-11  Score=91.43  Aligned_cols=102  Identities=26%  Similarity=0.407  Sum_probs=88.1

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v  100 (187)
                      ..+||||||.|.+...+|...| +..++|||+....+..+.+.+.+.++. |+.++.+|+.+++..+.+    +++.|-|
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~----~~sl~~I  123 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP----DGSLDKI  123 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC----CCCeeEE
Confidence            5899999999999999999987 789999999999999999999999984 999999999999988763    3477777


Q ss_pred             EE---cCCC--c------ccHHHHHHHHhcccCCeEEEE
Q 029836          101 FV---DADK--D------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus       101 ~~---d~~~--~------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ++   |+|+  .      -...+++.+.+.|++||.|.+
T Consensus       124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~  162 (227)
T COG0220         124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF  162 (227)
T ss_pred             EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence            65   5551  1      247899999999999999986

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.36  E-value=8.6e-12  Score=92.93  Aligned_cols=99  Identities=17%  Similarity=0.197  Sum_probs=73.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~   95 (187)
                      .++.+|||+|||+|.++..+++..++.++|++||+++.           ... ++++++++|+.+.  ++.+...- ..+
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~~-~~~  116 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLERV-GDS  116 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHHh-CCC
Confidence            45679999999999999999988765689999999881           122 4689999998763  33322111 146


Q ss_pred             ceeEEEEcCCCc-------c-------cHHHHHHHHhcccCCeEEEEe
Q 029836           96 TFDFVFVDADKD-------N-------YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        96 ~~D~v~~d~~~~-------~-------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +||+|+.+..+.       +       ...+++.+.++|+|||.+++.
T Consensus       117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            899999986311       1       135788889999999999985

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.36  E-value=2.5e-11  Score=99.94  Aligned_cols=121  Identities=16%  Similarity=0.187  Sum_probs=96.2

Q ss_pred             HHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            6 DEAQFFSMLL--KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         6 ~~~~~l~~l~--~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      ....+...++  ...++.+|||++++.|.-+..++..+...+.++++|+++..++.+++++++.|+ .++.+.+.|+..+
T Consensus        98 ~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~  176 (470)
T PRK11933         98 ASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVF  176 (470)
T ss_pred             HHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhh
Confidence            3344444444  445778999999999999999999887668999999999999999999999998 6789999998765


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCc-------c------------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKD-------N------------------YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~-------~------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .+.+      .+.||.|++|++..       +                  ....++.++++|||||.||.+.+..
T Consensus       177 ~~~~------~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        177 GAAL------PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             hhhc------hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence            3333      45799999997621       1                  1457778889999999999877654

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.35  E-value=2.9e-11  Score=91.21  Aligned_cols=98  Identities=21%  Similarity=0.273  Sum_probs=74.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++.   ..+++++|+++.+++.|++++...+..+++.+.++|..    ..      .++|
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~------~~~f  128 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SL------LGRF  128 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hc------cCCc
Confidence            45679999999999999999875   35799999999999999999988877678999998842    11      4689


Q ss_pred             eEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+|++...     .......++.+.++++.++++.+
T Consensus       129 D~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~  164 (230)
T PRK07580        129 DTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF  164 (230)
T ss_pred             CEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence            99987543     22345566777666655555543

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.34  E-value=1.4e-11  Score=92.32  Aligned_cols=97  Identities=16%  Similarity=0.139  Sum_probs=74.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC--------------CCceEEEeCCchHHH
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV--------------AHKIDFREGPALPLL   84 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~l   84 (187)
                      +..+||++|||.|..+++|++.   +.+|++||+++.+++.+.+   +.++              ..++++.++|..+..
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~  110 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT  110 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence            4579999999999999999975   6899999999999987632   2222              257899999998764


Q ss_pred             HHHhhcccCCCceeEEEEcC-----CCcccHHHHHHHHhcccCCeEEE
Q 029836           85 DQLIQDEKYHGTFDFVFVDA-----DKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~-----~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      +..      .+.||+|+-..     +++....++..+.++|+|||.++
T Consensus       111 ~~~------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~  152 (218)
T PRK13255        111 AAD------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGL  152 (218)
T ss_pred             ccc------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEE
Confidence            322      35789988332     24556788999999999998643

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.34  E-value=1.9e-11  Score=101.72  Aligned_cols=106  Identities=23%  Similarity=0.344  Sum_probs=80.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-HHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~   95 (187)
                      ..+..+|||+|||+|..+..+++.   ..+++++|+++.+++.+++.   .+..++++++++|+.+. ++ +.     .+
T Consensus        35 ~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~-~~-----~~  102 (475)
T PLN02336         35 PYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLN-IS-----DG  102 (475)
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccC-CC-----CC
Confidence            345679999999999999999976   36899999999999876552   22336889999988532 22 11     46


Q ss_pred             ceeEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           96 TFDFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        96 ~~D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      +||+|++....     .....+++.+.+.|+|||++++.+..+.
T Consensus       103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~  146 (475)
T PLN02336        103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH  146 (475)
T ss_pred             CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence            89999987641     2246789999999999999999776543

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.33  E-value=5.7e-11  Score=95.44  Aligned_cols=120  Identities=15%  Similarity=0.109  Sum_probs=86.8

Q ss_pred             CCCHHHHHHHHHH-HhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC
Q 029836            2 MTSPDEAQFFSML-LKLIN--AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG   78 (187)
Q Consensus         2 ~~~~~~~~~l~~l-~~~~~--~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~   78 (187)
                      |+++.+.+.+... .....  +.++||++||+|.+++.+++..   .+|+++|.++.+++.+++|++.+++ ++++++.+
T Consensus       186 Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~  261 (362)
T PRK05031        186 QPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI-DNVQIIRM  261 (362)
T ss_pred             ccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEC
Confidence            4555555544443 33332  3589999999999999888763   5899999999999999999999988 58999999


Q ss_pred             CchHHHHHHhhccc---------CCCceeEEEEcCCCcc-cHHHHHHHHhcccCCeEEEE
Q 029836           79 PALPLLDQLIQDEK---------YHGTFDFVFVDADKDN-YVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        79 d~~~~l~~~~~~~~---------~~~~~D~v~~d~~~~~-~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+.++++.+.....         ...+||+||+|++... ....++.+.+   +++++++
T Consensus       262 d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyv  318 (362)
T PRK05031        262 SAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYI  318 (362)
T ss_pred             CHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEE
Confidence            99988766432100         0125899999998654 4455555543   6776665

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.33  E-value=3.9e-11  Score=85.42  Aligned_cols=107  Identities=21%  Similarity=0.340  Sum_probs=82.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      +.+|||+|||.|.....|++.- -.+.+++||.++.+++.|+...+..+.++.|+|.+.|..+.  ...     .++||+
T Consensus        68 A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~-----~~qfdl  139 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFL-----SGQFDL  139 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--ccc-----ccceeE
Confidence            4599999999999999998652 23569999999999999998888889987899999988653  111     355666


Q ss_pred             EE---------EcCC--CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836          100 VF---------VDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus       100 v~---------~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      |.         +.+.  .....-++..+.++|+|||++++..+.|.
T Consensus       140 vlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T  185 (227)
T KOG1271|consen  140 VLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT  185 (227)
T ss_pred             EeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence            63         3222  22335577788899999999999888764

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.32  E-value=6.7e-11  Score=95.41  Aligned_cols=99  Identities=20%  Similarity=0.185  Sum_probs=84.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v  100 (187)
                      .+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++ ++++++++|+..++..       .++||+|
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~-~~~~v~~~Da~~~l~~-------~~~fD~V  129 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL-ENEKVFNKDANALLHE-------ERKFDVV  129 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEhhhHHHHHhh-------cCCCCEE
Confidence            5899999999999999987754 46899999999999999999999988 4678999999877653       2469999


Q ss_pred             EEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836          101 FVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus       101 ~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++|+. .....+++.+...+++||++.++
T Consensus       130 ~lDP~-Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        130 DIDPF-GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             EECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence            99985 44467888878889999999986

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.32  E-value=3.2e-11  Score=90.10  Aligned_cols=105  Identities=16%  Similarity=0.197  Sum_probs=87.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCC-----CEEEEEeCCchHHHHHHHHHHHcCCCCc--eEEEeCCchHHHHHHhhcc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDD-----GKILALDITKEHYEKGLPIIQKAGVAHK--IDFREGPALPLLDQLIQDE   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~-----~~v~~vd~~~~~~~~a~~~~~~~~~~~~--i~~~~~d~~~~l~~~~~~~   91 (187)
                      +..++||++||+|-++.-++++....     ++|+.+|++|+++..+++...+.++.+.  +.++.+|+++. | +    
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p-F----  173 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P-F----  173 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C-C----
Confidence            44799999999999999999887632     7999999999999999999887777544  89999999764 3 2    


Q ss_pred             cCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           92 KYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        92 ~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                       ++++||...+...   ..+....++++.+.|||||.+.+-+
T Consensus       174 -dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe  214 (296)
T KOG1540|consen  174 -DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE  214 (296)
T ss_pred             -CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence             2678999987654   5678899999999999999988643

>PLN02672 methionine S-methyltransferase

Probab=99.31  E-value=4.8e-11  Score=105.94  Aligned_cols=95  Identities=17%  Similarity=0.140  Sum_probs=75.1

Q ss_pred             CHHHHHHHHHHHhhc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC----------
Q 029836            4 SPDEAQFFSMLLKLI----NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV----------   69 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~----~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~----------   69 (187)
                      .|++..++..|....    ++.+|||+|||+|.+++.+++..+ ..+++++|+++.+++.|++|.+.+++          
T Consensus        99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~  177 (1082)
T PLN02672         99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDG  177 (1082)
T ss_pred             chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCccccccccccc
Confidence            467777777743321    246899999999999999998876 57999999999999999999998643          


Q ss_pred             -----CCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC
Q 029836           70 -----AHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        70 -----~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                           .++++++++|..+.++..      ..+||+|+.+++
T Consensus       178 ~~~~l~~rV~f~~sDl~~~~~~~------~~~fDlIVSNPP  212 (1082)
T PLN02672        178 EGKTLLDRVEFYESDLLGYCRDN------NIELDRIVGCIP  212 (1082)
T ss_pred             ccccccccEEEEECchhhhcccc------CCceEEEEECCC
Confidence                 247999999987665321      237999998865

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.31  E-value=4.5e-11  Score=86.24  Aligned_cols=112  Identities=14%  Similarity=0.017  Sum_probs=82.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..+..++||+|||+|..+..+++.   ..+++++|+++.+++.+++++..   .++++++++|+.++...       ..+
T Consensus        11 ~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-------~~~   77 (169)
T smart00650       11 LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-------KLQ   77 (169)
T ss_pred             CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-------ccC
Confidence            345679999999999999999976   47899999999999999998854   25899999999875321       346


Q ss_pred             eeEEEEcCCCcccHHHHHHHHh--cccCCeEEEEeCcCCCccccCCC
Q 029836           97 FDFVFVDADKDNYVNYHKRLIE--LVKVGGVIGYDNTLWGGSVVAPP  141 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~--~L~~gG~lv~~~~~~~~~~~~~~  141 (187)
                      ||.|+.+.+..-....+..+..  .+.++|++++..-........|.
T Consensus        78 ~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~  124 (169)
T smart00650       78 PYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPG  124 (169)
T ss_pred             CCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCC
Confidence            8999998764434455555553  24488888876544444444444

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.30  E-value=6.4e-11  Score=77.15  Aligned_cols=99  Identities=21%  Similarity=0.302  Sum_probs=78.4

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEE
Q 029836           22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVF  101 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~  101 (187)
                      +++|+|||.|..+..++. . ...+++++|.++..+..+++..... ...++++.++|..+.....      .++||+|+
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~d~i~   71 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEA------DESFDVII   71 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhcccc------CCceEEEE
Confidence            489999999999998887 2 3689999999999999888644333 3367899999987765411      46899999


Q ss_pred             EcCCC----cccHHHHHHHHhcccCCeEEEEe
Q 029836          102 VDADK----DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus       102 ~d~~~----~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++...    .....+++.+.+.+++||.+++.
T Consensus        72 ~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          72 SDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             EccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            98752    34577889999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PHA03412 putative methyltransferase; Provisional

Probab=99.29  E-value=1.3e-10  Score=87.04  Aligned_cols=102  Identities=13%  Similarity=0.157  Sum_probs=77.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP--DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~--~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+.+|||+|||+|..++.+++.++  +..+|+++|+++.+++.|++++      .++.++++|.....  .      .+
T Consensus        48 ~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~--~------~~  113 (241)
T PHA03412         48 CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTE--F------DT  113 (241)
T ss_pred             cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhccc--c------cC
Confidence            3467999999999999999987643  2468999999999999999875      35788998886432  1      45


Q ss_pred             ceeEEEEcCCC-----cc----------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           96 TFDFVFVDADK-----DN----------YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        96 ~~D~v~~d~~~-----~~----------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +||+|+.+++.     .+          ...+++.+.+++++|+.|+=.+.+-
T Consensus       114 ~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~  166 (241)
T PHA03412        114 LFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSAN  166 (241)
T ss_pred             CccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccccc
Confidence            89999999761     11          3457777788888888865454443

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.29  E-value=3.1e-11  Score=88.56  Aligned_cols=107  Identities=15%  Similarity=0.175  Sum_probs=75.2

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHH
Q 029836           10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQL   87 (187)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~   87 (187)
                      +.+.+....++.+|||+|||+|..+..++....+.++++++|+++.+           .. ++++++++|..+.  ++.+
T Consensus        23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l   90 (188)
T TIGR00438        23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKI   90 (188)
T ss_pred             HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHH
Confidence            33344445677899999999999999998876546799999999864           11 4678888887542  2221


Q ss_pred             hhcccCCCceeEEEEcCCC-------cc-------cHHHHHHHHhcccCCeEEEEe
Q 029836           88 IQDEKYHGTFDFVFVDADK-------DN-------YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~~-------~~-------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .... ..++||+|++++..       .+       ....++.+.+.|+|||.+++.
T Consensus        91 ~~~~-~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438        91 RERV-GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             HHHh-CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            1110 14579999997531       11       256888899999999999975

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.29  E-value=4.3e-11  Score=88.12  Aligned_cols=101  Identities=21%  Similarity=0.272  Sum_probs=77.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..+.+.|+|+.||.|..++.+++..+ ..+|+++|++|.+++.+++|++.+++..++..+++|+.++++        .+.
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~  169 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EGK  169 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT-
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------ccc
Confidence            34678999999999999999998533 689999999999999999999999999999999999988876        368


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      +|-|+++.+. ....+++.+..++++||++.
T Consensus       170 ~drvim~lp~-~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  170 FDRVIMNLPE-SSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EEEEEE--TS-SGGGGHHHHHHHEEEEEEEE
T ss_pred             cCEEEECChH-HHHHHHHHHHHHhcCCcEEE
Confidence            9999997753 34478888999999999885

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.28  E-value=2e-10  Score=92.00  Aligned_cols=120  Identities=13%  Similarity=0.050  Sum_probs=86.1

Q ss_pred             CCCHHHHHHHH-HHHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC
Q 029836            2 MTSPDEAQFFS-MLLKLIN--AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG   78 (187)
Q Consensus         2 ~~~~~~~~~l~-~l~~~~~--~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~   78 (187)
                      |+++.+.+.|. .+....+  +.++||+|||+|.+++.+++..   .+|+++|+++++++.|++|++.+++ .+++++.+
T Consensus       177 Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~  252 (353)
T TIGR02143       177 QPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRM  252 (353)
T ss_pred             cCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEc
Confidence            45555554444 4444332  4579999999999999888763   4899999999999999999999988 57999999


Q ss_pred             CchHHHHHHhhc-------ccC--CCceeEEEEcCCCcc-cHHHHHHHHhcccCCeEEEE
Q 029836           79 PALPLLDQLIQD-------EKY--HGTFDFVFVDADKDN-YVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        79 d~~~~l~~~~~~-------~~~--~~~~D~v~~d~~~~~-~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+.++++.....       ..+  ...||+||+|++... ....++.+.+   +++++++
T Consensus       253 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYv  309 (353)
T TIGR02143       253 SAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYI  309 (353)
T ss_pred             CHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEE
Confidence            998877642110       000  013899999998655 4555565543   6777765

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.27  E-value=1.5e-10  Score=92.94  Aligned_cols=102  Identities=16%  Similarity=0.124  Sum_probs=87.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v  100 (187)
                      .+|||..||+|..++.++...+...+|+++|+++.+++.+++|++.++. .++++.++|+..++...      ..+||+|
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~l~~~------~~~fDvI  118 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-ENIEVPNEDAANVLRYR------NRKFHVI  118 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEchhHHHHHHHh------CCCCCEE
Confidence            4899999999999999998754347899999999999999999999887 47899999998887754      4679999


Q ss_pred             EEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836          101 FVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus       101 ~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ++|+. .....+++.+.+.+++||+|.+.-
T Consensus       119 dlDPf-Gs~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       119 DIDPF-GTPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             EeCCC-CCcHHHHHHHHHhcccCCEEEEEe
Confidence            99984 445689999999999999999863

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.27  E-value=2.6e-11  Score=93.43  Aligned_cols=105  Identities=25%  Similarity=0.302  Sum_probs=75.8

Q ss_pred             CCCEEEEEcccccHH----HHHHHhhCCC----CCEEEEEeCCchHHHHHHHHHHH----cC------------------
Q 029836           19 NAKNTMEIGVFTGYS----LLATALAIPD----DGKILALDITKEHYEKGLPIIQK----AG------------------   68 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~----~~~l~~~~~~----~~~v~~vd~~~~~~~~a~~~~~~----~~------------------   68 (187)
                      ++.+|+++|||+|..    +..+++..+.    +.+|+++|+++.+++.|++.+-.    .+                  
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            456999999999973    4445554432    46899999999999999985310    01                  


Q ss_pred             ----CCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           69 ----VAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        69 ----~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                          +..+++|.++|..+..+.       .++||+|++...     .+.....++.+.+.|+|||++++-.
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~-------~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPP-------LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCc-------cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                114688888888764221       468999998643     2344579999999999999999743

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=1.8e-10  Score=94.04  Aligned_cols=118  Identities=18%  Similarity=0.151  Sum_probs=93.1

Q ss_pred             CCCHHHHHHHHHHH----hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe
Q 029836            2 MTSPDEAQFFSMLL----KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE   77 (187)
Q Consensus         2 ~~~~~~~~~l~~l~----~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~   77 (187)
                      |+++.+.+-|...+    ...+.+++||+.||.|.+++.+++.   ..+|+++|+++++++.|++|.+.++.. |++|..
T Consensus       272 Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~  347 (432)
T COG2265         272 QVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGID-NVEFIA  347 (432)
T ss_pred             ecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEe
Confidence            55666666655554    3345679999999999999999954   579999999999999999999999995 599999


Q ss_pred             CCchHHHHHHhhcccCCCceeEEEEcCCCcccH-HHHHHHHhcccCCeEEEE
Q 029836           78 GPALPLLDQLIQDEKYHGTFDFVFVDADKDNYV-NYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        78 ~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~-~~~~~~~~~L~~gG~lv~  128 (187)
                      ++++++.+....    ...+|.|++|+++.... .+++.+ ..++|-.++.+
T Consensus       348 ~~ae~~~~~~~~----~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYV  394 (432)
T COG2265         348 GDAEEFTPAWWE----GYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYV  394 (432)
T ss_pred             CCHHHHhhhccc----cCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEE
Confidence            999998876521    35789999999977776 555554 55677776665

>PRK06202 hypothetical protein; Provisional

Probab=99.25  E-value=4.1e-11  Score=90.71  Aligned_cols=103  Identities=14%  Similarity=0.046  Sum_probs=72.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP---DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~---~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      .++.+|||+|||+|..+..+++..+   .+.+++++|+++++++.|+++....    ++++...++... +..      +
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~~~------~  127 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-VAE------G  127 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-ccc------C
Confidence            4667999999999999998876432   2469999999999999998876432    455555544322 211      5


Q ss_pred             CceeEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           95 GTFDFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        95 ~~~D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ++||+|++...-     .....++.++.+.++  |.+++.+...
T Consensus       128 ~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~  169 (232)
T PRK06202        128 ERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR  169 (232)
T ss_pred             CCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence            689999987541     123568888888887  5666666543

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.24  E-value=3.6e-11  Score=88.72  Aligned_cols=105  Identities=12%  Similarity=0.135  Sum_probs=84.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC-CCceEEEeCCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV-AHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+.++|||..+|.|+.+++.++.-  ..+|+.+|.+|..++.|+-|-=..++ +.+++++.||+.++.+.+.     +.
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rG--A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~-----D~  204 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD-----DE  204 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcC--CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC-----cc
Confidence            3457899999999999999888752  24999999999999888755433333 2468999999999998884     67


Q ss_pred             ceeEEEEcCCCc------ccHHHHHHHHhcccCCeEEEE
Q 029836           96 TFDFVFVDADKD------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        96 ~~D~v~~d~~~~------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +||+|+.|++.-      ...++++++.+.|++||.++.
T Consensus       205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH  243 (287)
T COG2521         205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH  243 (287)
T ss_pred             ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence            899999998732      236789999999999999973

>PRK05785 hypothetical protein; Provisional

Probab=99.24  E-value=1.2e-10  Score=87.81  Aligned_cols=97  Identities=16%  Similarity=0.139  Sum_probs=72.8

Q ss_pred             HHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836           10 FFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus        10 ~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      ++..+... .++.+|||+|||+|..+..+++..  +.+|+++|+++++++.|++.         ..++++|+.+. + +.
T Consensus        41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p-~~  107 (226)
T PRK05785         41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-P-FR  107 (226)
T ss_pred             HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-C-CC
Confidence            34444332 347899999999999999998765  46999999999999998763         13467777643 2 11


Q ss_pred             hcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCe
Q 029836           89 QDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGG  124 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG  124 (187)
                           +++||+|++...   ..+....++++.+.|||..
T Consensus       108 -----d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        108 -----DKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             -----CCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence                 679999998654   4567789999999999953

>PHA03411 putative methyltransferase; Provisional

Probab=99.22  E-value=4.5e-10  Score=85.93  Aligned_cols=96  Identities=11%  Similarity=0.186  Sum_probs=73.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ...+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++      ++++++++|+.++..        .++||
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--------~~kFD  128 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--------NEKFD  128 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--------cCCCc
Confidence            457999999999999998887654 479999999999999998864      478899999976542        45899


Q ss_pred             EEEEcCCC-----c------cc------------HHHHHHHHhcccCCeEEEEe
Q 029836           99 FVFVDADK-----D------NY------------VNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        99 ~v~~d~~~-----~------~~------------~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+++++.     .      .+            ..++.....+|+|+|.+.+-
T Consensus       129 lIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        129 VVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             EEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            99998761     1      01            34555556788999877653

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.22  E-value=2.1e-10  Score=88.32  Aligned_cols=110  Identities=18%  Similarity=0.199  Sum_probs=79.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      -.++++|||||||.|+.+..++..-  ...|+++|+++......+..-+-.|....+... ....+.++.       .+.
T Consensus       113 ~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~-------~~~  182 (315)
T PF08003_consen  113 DLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPN-------LGA  182 (315)
T ss_pred             CcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhccc-------cCC
Confidence            4578999999999999999888763  368999999998776544322223332333333 233344443       368


Q ss_pred             eeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCcc
Q 029836           97 FDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGGS  136 (187)
Q Consensus        97 ~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~  136 (187)
                      ||+||+-+.   ..+....+..+...|++||.+|+......|.
T Consensus       183 FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~  225 (315)
T PF08003_consen  183 FDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD  225 (315)
T ss_pred             cCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence            999998775   5677889999999999999999887766554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.22  E-value=6.2e-11  Score=87.95  Aligned_cols=110  Identities=19%  Similarity=0.363  Sum_probs=80.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC--------------------------
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA--------------------------   70 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~--------------------------   70 (187)
                      ...++.+|||||.+|..++.+++.+. ...+.|+||++..+..|+++++...-.                          
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~  134 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD  134 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence            45788999999999999999999997 578999999999999999998743110                          


Q ss_pred             --------CceEEEeC----CchHHHHHHhhcccCCCceeEEEEcCC---------CcccHHHHHHHHhcccCCeEEEEe
Q 029836           71 --------HKIDFREG----PALPLLDQLIQDEKYHGTFDFVFVDAD---------KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        71 --------~~i~~~~~----d~~~~l~~~~~~~~~~~~~D~v~~d~~---------~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                              .++.+...    +..+++...      ...||+|++-.-         -+....+|..+.++|.|||+||+.
T Consensus       135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~------~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  135 RAFTTDFPDNVWFQKENYVLESDDFLDMI------QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             ccccccCCcchhcccccEEEecchhhhhc------cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence                    11111111    112333211      568999986421         355789999999999999999975


Q ss_pred             CcCC
Q 029836          130 NTLW  133 (187)
Q Consensus       130 ~~~~  133 (187)
                      ---|
T Consensus       209 PQpW  212 (288)
T KOG2899|consen  209 PQPW  212 (288)
T ss_pred             CCch
Confidence            5444

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.19  E-value=7.6e-11  Score=86.81  Aligned_cols=127  Identities=16%  Similarity=0.197  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhh-----cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            7 EAQFFSMLLKL-----INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         7 ~~~~l~~l~~~-----~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      ...||..+...     .+..+.||+|+|.|..|..++..+  ..+|..||+.+..++.|++.+.... ....++++...+
T Consensus        38 S~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ  114 (218)
T PF05891_consen   38 SRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQ  114 (218)
T ss_dssp             HHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GG
T ss_pred             HHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHh
Confidence            34555555443     235699999999999999887443  4799999999999999998776521 134577888887


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe-CcCCCcc-ccCCCCC
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD-NTLWGGS-VVAPPDA  143 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~-~~~~~~~-~~~~~~~  143 (187)
                      ++.|.       ..+||+|.+...     -++...||++|...|+|+|+|++. |+...+. ..++++.
T Consensus       115 ~f~P~-------~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~Ds  176 (218)
T PF05891_consen  115 DFTPE-------EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDS  176 (218)
T ss_dssp             G-----------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTT
T ss_pred             hccCC-------CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccC
Confidence            77764       469999999875     356788999999999999999994 4444443 4444443

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=99.17  E-value=4.1e-10  Score=82.00  Aligned_cols=96  Identities=19%  Similarity=0.254  Sum_probs=81.6

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEE
Q 029836           22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVF  101 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~  101 (187)
                      +++|||+|.|..++.++-..| +.+++.+|.....+...+......++ +|++++++++++  +..      ..+||+|+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~--~~~------~~~fd~v~  120 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEE--PEY------RESFDVVT  120 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHH--TTT------TT-EEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecc--ccc------CCCccEEE
Confidence            899999999999999999887 79999999999999999999999999 589999999987  111      67999999


Q ss_pred             EcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836          102 VDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus       102 ~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..+. .....+++.+.+++++||.+++
T Consensus       121 aRAv-~~l~~l~~~~~~~l~~~G~~l~  146 (184)
T PF02527_consen  121 ARAV-APLDKLLELARPLLKPGGRLLA  146 (184)
T ss_dssp             EESS-SSHHHHHHHHGGGEEEEEEEEE
T ss_pred             eehh-cCHHHHHHHHHHhcCCCCEEEE
Confidence            9874 3567888999999999999885

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.17  E-value=6.4e-10  Score=87.53  Aligned_cols=96  Identities=18%  Similarity=0.085  Sum_probs=69.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC----CCceEEEeCCchHHHHHHhhcccCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV----AHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++.+..+.    ..++++..+|..+.          .
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~  210 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------S  210 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------C
Confidence            4679999999999999999974   57999999999999999999886532    14678888886432          4


Q ss_pred             CceeEEEEcCC----C-cccHHHHHHHHhcccCCeEEEE
Q 029836           95 GTFDFVFVDAD----K-DNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        95 ~~~D~v~~d~~----~-~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ++||+|++-..    . .....++..+.+ +.+|++++.
T Consensus       211 ~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs  248 (315)
T PLN02585        211 GKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS  248 (315)
T ss_pred             CCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence            68999986432    1 122334555543 456776653

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.17  E-value=5.4e-10  Score=81.30  Aligned_cols=121  Identities=21%  Similarity=0.180  Sum_probs=87.8

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCC--------EEEEEeCCchHHHHHHHHHHHcCCCCce
Q 029836            2 MTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDG--------KILALDITKEHYEKGLPIIQKAGVAHKI   73 (187)
Q Consensus         2 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~--------~v~~vd~~~~~~~~a~~~~~~~~~~~~i   73 (187)
                      ++.+.....|-.++...+...+||--||+|.+.++.+.......        ++++.|+++++++.+++|++..+....+
T Consensus        11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i   90 (179)
T PF01170_consen   11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI   90 (179)
T ss_dssp             SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred             CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence            35677778888888888888999999999999998765544222        4899999999999999999999998889


Q ss_pred             EEEeCCchHHHHHHhhcccCCCceeEEEEcCCC-----------cccHHHHHHHHhcccCCeEEEEe
Q 029836           74 DFREGPALPLLDQLIQDEKYHGTFDFVFVDADK-----------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        74 ~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~-----------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+.+.|+.++-  ..     .+++|.|+.|++.           .-|..+++.+.+.+++..++++.
T Consensus        91 ~~~~~D~~~l~--~~-----~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~  150 (179)
T PF01170_consen   91 DFIQWDARELP--LP-----DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT  150 (179)
T ss_dssp             EEEE--GGGGG--GT-----TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred             EEEecchhhcc--cc-----cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence            99999997664  11     5789999999871           22456778888889996666653

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.17  E-value=1.1e-10  Score=82.91  Aligned_cols=78  Identities=27%  Similarity=0.354  Sum_probs=59.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v  100 (187)
                      +.|+|..||.|..++.+|+..   .+|+++|+++..++.|+.|.+-.|..++++++++|..+.++.+..    ...+|+|
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~~~D~v   73 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NKIFDVV   73 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEE
T ss_pred             CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cccccEE
Confidence            368999999999999999873   589999999999999999999999989999999999988766531    1128999


Q ss_pred             EEcCC
Q 029836          101 FVDAD  105 (187)
Q Consensus       101 ~~d~~  105 (187)
                      |++++
T Consensus        74 FlSPP   78 (163)
T PF09445_consen   74 FLSPP   78 (163)
T ss_dssp             EE---
T ss_pred             EECCC
Confidence            99975

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=9.8e-10  Score=78.27  Aligned_cols=104  Identities=21%  Similarity=0.164  Sum_probs=81.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      .++.++|||||+|..+.++++.+.+.....++|++|++++..++-.+.++.  ++..++.|....+.        .++.|
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~--------~~~VD  112 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR--------NESVD  112 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc--------cCCcc
Confidence            488999999999999999999887778999999999999999998888775  57788887765554        57899


Q ss_pred             EEEEcCCC-----c-c------------------cHHHHHHHHhcccCCeEEEEeCcC
Q 029836           99 FVFVDADK-----D-N------------------YVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        99 ~v~~d~~~-----~-~------------------~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +++.+++.     + .                  ...++..+-.+|.|.|++...-..
T Consensus       113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~  170 (209)
T KOG3191|consen  113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR  170 (209)
T ss_pred             EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence            99988651     0 0                  134455555788899998865443

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.14  E-value=8.3e-10  Score=79.92  Aligned_cols=107  Identities=20%  Similarity=0.227  Sum_probs=71.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC--CCCceEEEeCCchHHH-HHHhhcccC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG--VAHKIDFREGPALPLL-DQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~l-~~~~~~~~~   93 (187)
                      ..++++|||+|||+|..++.++...+ ..+|+..|.++ .++..+.|++.++  ...++++...+..+.. +...    .
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----~  116 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----E  116 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----S
T ss_pred             hcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----c
Confidence            55788999999999999999888743 68999999998 9999999999887  4567888777654422 2221    1


Q ss_pred             CCceeEEEEcC-C--CcccHHHHHHHHhcccCCeEEEEe
Q 029836           94 HGTFDFVFVDA-D--KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        94 ~~~~D~v~~d~-~--~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+||+|+... -  .+.+..+++.+..+|+++|.+++.
T Consensus       117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~  155 (173)
T PF10294_consen  117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLA  155 (173)
T ss_dssp             -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred             cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            45899999543 2  566788899999999999886653

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=99.13  E-value=4e-09  Score=82.09  Aligned_cols=149  Identities=20%  Similarity=0.271  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      .....+...++...+..+|||+.++.|.=+..++..+...+.+++.|+++..+...++++++.|. .++.+...|+....
T Consensus        71 d~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~  149 (283)
T PF01189_consen   71 DESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLD  149 (283)
T ss_dssp             HHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHH
T ss_pred             ccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeecccccc
Confidence            34445555566666778999999999999999999887679999999999999999999999998 67888878887765


Q ss_pred             HHHhhcccCCCceeEEEEcCCC---------cc----------------cHHHHHHHHhcc----cCCeEEEEeCcCCCc
Q 029836           85 DQLIQDEKYHGTFDFVFVDADK---------DN----------------YVNYHKRLIELV----KVGGVIGYDNTLWGG  135 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~---------~~----------------~~~~~~~~~~~L----~~gG~lv~~~~~~~~  135 (187)
                      +...     ...||.|++|++.         .+                ....++.+.+++    +|||.++...+... 
T Consensus       150 ~~~~-----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~-  223 (283)
T PF01189_consen  150 PKKP-----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS-  223 (283)
T ss_dssp             HHHH-----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH-
T ss_pred             cccc-----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH-
Confidence            5542     3469999999761         00                145778888999    99999997655332 


Q ss_pred             cccCCCCCCchhhhhhHHHHHHHHHHHHhcCCCeeEEEeec
Q 029836          136 SVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISI  176 (187)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  176 (187)
                          +         .+-...++.|   +..+++++..-.+.
T Consensus       224 ----~---------eENE~vV~~f---l~~~~~~~l~~~~~  248 (283)
T PF01189_consen  224 ----P---------EENEEVVEKF---LKRHPDFELVPIPL  248 (283)
T ss_dssp             ----G---------GGTHHHHHHH---HHHSTSEEEECCES
T ss_pred             ----H---------HHHHHHHHHH---HHhCCCcEEEeccc
Confidence                1         1222355555   45566776554443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.13  E-value=2.8e-09  Score=83.20  Aligned_cols=90  Identities=20%  Similarity=0.157  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      +.....+-..+...+..+|||||||.|..+..+++.   ..+++++|+++.+++.+++++...+..++++++++|+.+..
T Consensus        22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~   98 (294)
T PTZ00338         22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE   98 (294)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence            334444444444556789999999999999999875   46899999999999999999988775578999999997642


Q ss_pred             HHHhhcccCCCceeEEEEcCCC
Q 029836           85 DQLIQDEKYHGTFDFVFVDADK  106 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~  106 (187)
                               ...||.|+.+.+.
T Consensus        99 ---------~~~~d~VvaNlPY  111 (294)
T PTZ00338         99 ---------FPYFDVCVANVPY  111 (294)
T ss_pred             ---------ccccCEEEecCCc
Confidence                     2468999987763

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=2.6e-09  Score=85.64  Aligned_cols=126  Identities=17%  Similarity=0.230  Sum_probs=97.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      ++.....+...++...++.+|||+.++.|.=|..++..+.. +..|+++|.++..++..++|+++.|.. ++.+++.|+.
T Consensus       140 vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~  218 (355)
T COG0144         140 VQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDAR  218 (355)
T ss_pred             EcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccc
Confidence            34555666666777778899999999999999999998864 356699999999999999999999994 5788888775


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCCCc---------c----------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDADKD---------N----------------YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .......    ..++||.|++|++..         +                ..++++.++++|||||.|+.+.+..
T Consensus       219 ~~~~~~~----~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~  291 (355)
T COG0144         219 RLAELLP----GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL  291 (355)
T ss_pred             ccccccc----ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence            4432221    023599999997610         0                1467788889999999999877654

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.12  E-value=9.9e-10  Score=86.41  Aligned_cols=83  Identities=16%  Similarity=0.227  Sum_probs=65.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc-CCCCceEEEe-CCchHHHHHHhhcccCCCc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA-GVAHKIDFRE-GPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~-~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~   96 (187)
                      +..++||||||+|.+...++...+ +.+++++|+++.+++.|+++++.+ ++..++++++ .+..+.+..+...   .+.
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~---~~~  189 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHK---NER  189 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccccc---CCc
Confidence            347999999999998888877655 689999999999999999999999 7888898865 4444444332111   468


Q ss_pred             eeEEEEcCC
Q 029836           97 FDFVFVDAD  105 (187)
Q Consensus        97 ~D~v~~d~~  105 (187)
                      ||+|++.++
T Consensus       190 fDlivcNPP  198 (321)
T PRK11727        190 FDATLCNPP  198 (321)
T ss_pred             eEEEEeCCC
Confidence            999999987

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=3.2e-09  Score=76.33  Aligned_cols=100  Identities=19%  Similarity=0.300  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            5 PDEAQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         5 ~~~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      +.....+-..+.   ....+.|+|+|||+|..++-.+.. + ..+|+|+|+++++++.+++|..+  +..+++|+.+|..
T Consensus        28 ~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l-G-a~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~  103 (198)
T COG2263          28 APLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL-G-ASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVS  103 (198)
T ss_pred             hHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc-C-CcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchh
Confidence            334444444443   335678999999999998876654 3 48999999999999999999998  3368999999997


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHh
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIE  118 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~  118 (187)
                      ++          ...+|.++.+++     +..-..|++.+..
T Consensus       104 ~~----------~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale  135 (198)
T COG2263         104 DF----------RGKFDTVIMNPPFGSQRRHADRPFLLKALE  135 (198)
T ss_pred             hc----------CCccceEEECCCCccccccCCHHHHHHHHH
Confidence            65          568899999976     2223455555554

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.11  E-value=7.1e-10  Score=80.25  Aligned_cols=133  Identities=8%  Similarity=0.071  Sum_probs=86.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+..+|||+|||.|....++.+.  ++.+..++|++++.+..+.+        .-+.++++|..+.++.+.     +++|
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~--------rGv~Viq~Dld~gL~~f~-----d~sF   76 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA--------RGVSVIQGDLDEGLADFP-----DQSF   76 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH--------cCCCEEECCHHHhHhhCC-----CCCc
Confidence            35679999999999999888875  26899999999988766544        356799999998888774     6899


Q ss_pred             eEEEEcCCCcc---cHHHHHHHHhcccCCeEEEEeCc-C--------CCccccCCCCCC--chhhhhhHHHHHHHHHHHH
Q 029836           98 DFVFVDADKDN---YVNYHKRLIELVKVGGVIGYDNT-L--------WGGSVVAPPDAD--LDEHFLYLRDFVQELNKAL  163 (187)
Q Consensus        98 D~v~~d~~~~~---~~~~~~~~~~~L~~gG~lv~~~~-~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  163 (187)
                      |.|++.-.-+.   ....++++.+. ...+++.|-|. +        +.|+++....-+  +....+-..-.++.|.+..
T Consensus        77 D~VIlsqtLQ~~~~P~~vL~EmlRV-gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc  155 (193)
T PF07021_consen   77 DYVILSQTLQAVRRPDEVLEEMLRV-GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLC  155 (193)
T ss_pred             cEEehHhHHHhHhHHHHHHHHHHHh-cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHH
Confidence            99998654222   33445554432 23456666665 2        255544332211  1112223345567776666


Q ss_pred             hcC
Q 029836          164 AVD  166 (187)
Q Consensus       164 ~~~  166 (187)
                      ...
T Consensus       156 ~~~  158 (193)
T PF07021_consen  156 REL  158 (193)
T ss_pred             HHC
Confidence            554

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.11  E-value=2.1e-09  Score=80.46  Aligned_cols=116  Identities=20%  Similarity=0.265  Sum_probs=82.3

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHH-cC----------CCC
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK-AG----------VAH   71 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~-~~----------~~~   71 (187)
                      .+|.-.+++.. ....++.+||..|||.|.-..+|++.   +.+|+++|+++.+++.+.+.-.. ..          ...
T Consensus        22 ~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~   97 (218)
T PF05724_consen   22 PNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAG   97 (218)
T ss_dssp             STHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTS
T ss_pred             CCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCC
Confidence            34555556665 33455669999999999999999986   67999999999999877322111 00          124


Q ss_pred             ceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836           72 KIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        72 ~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +++++++|..++-+..      .++||+|+=...     ++...++.+.+.++|+|||.+++
T Consensus        98 ~i~~~~gDfF~l~~~~------~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL  153 (218)
T PF05724_consen   98 RITIYCGDFFELPPED------VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL  153 (218)
T ss_dssp             SEEEEES-TTTGGGSC------HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred             ceEEEEcccccCChhh------cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence            6899999998754432      358999985432     56678899999999999999433

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.10  E-value=2e-09  Score=75.74  Aligned_cols=117  Identities=15%  Similarity=0.102  Sum_probs=88.0

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      ++-.++.+...+....+..|||+|.|+|..|..+++..-+...++++|.+++......+.+      +.++++.||+.+.
T Consensus        33 Ss~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l  106 (194)
T COG3963          33 SSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDL  106 (194)
T ss_pred             cHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhH
Confidence            3444444444455566779999999999999999887655689999999999998777655      4567999999775


Q ss_pred             HHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836           84 LDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      -..+.+..  .+.||.|+..-+     .....+.++.+...|+.||.++-
T Consensus       107 ~~~l~e~~--gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq  154 (194)
T COG3963         107 RTTLGEHK--GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ  154 (194)
T ss_pred             HHHHhhcC--CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence            43332221  568999998765     33456789999999999999884

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.06  E-value=1.6e-09  Score=81.24  Aligned_cols=109  Identities=11%  Similarity=0.021  Sum_probs=79.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH------H-----cCCCCceEEEeCCchHHHHHH
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ------K-----AGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~------~-----~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      ++.+||..|||.|....+|+..   +.+|+++|+++.+++.+.+...      +     .....+++++++|..++-+..
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            4579999999999999999975   6789999999999987754110      0     001247899999998753210


Q ss_pred             hhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           88 IQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      .    ..++||+|+-.+.     ++....+.+.+.++|+|||.+++-...+.
T Consensus       120 ~----~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~  167 (226)
T PRK13256        120 N----NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD  167 (226)
T ss_pred             c----ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence            0    0357999875543     45567889999999999998877554433

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=99.06  E-value=1.2e-09  Score=80.97  Aligned_cols=97  Identities=23%  Similarity=0.283  Sum_probs=83.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc-ee
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT-FD   98 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~-~D   98 (187)
                      +++++|||+|.|..++.++-..| +.+++.+|.....+...++...+.++ +|++++++.++++.+..        . ||
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~~--------~~~D  137 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQEK--------KQYD  137 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhccccc--------ccCc
Confidence            68999999999999999997766 67799999999999999999999999 78999999998775432        3 99


Q ss_pred             EEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           99 FVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      +|.+.+. .......+-+.+++++||.++
T Consensus       138 ~vtsRAv-a~L~~l~e~~~pllk~~g~~~  165 (215)
T COG0357         138 VVTSRAV-ASLNVLLELCLPLLKVGGGFL  165 (215)
T ss_pred             EEEeehc-cchHHHHHHHHHhcccCCcch
Confidence            9998763 456678889999999999876

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.05  E-value=1.9e-09  Score=84.56  Aligned_cols=117  Identities=19%  Similarity=0.211  Sum_probs=96.2

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-Cc
Q 029836            2 MTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PA   80 (187)
Q Consensus         2 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~   80 (187)
                      ++.|...+.+-.|+...+++.+||=-||+|...++..-.   ++++++.|++..+++-|+.|++..+.. ...+... |+
T Consensus       180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da  255 (347)
T COG1041         180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDA  255 (347)
T ss_pred             CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEeccc
Confidence            578999999999999999999999999999999887643   689999999999999999999999874 4544444 77


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCC-------C-cc----cHHHHHHHHhcccCCeEEEEe
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDAD-------K-DN----YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~-------~-~~----~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ... + +.     ..++|.|..|++       + ..    +.++++.+...|++||++++.
T Consensus       256 ~~l-p-l~-----~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~  309 (347)
T COG1041         256 TNL-P-LR-----DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA  309 (347)
T ss_pred             ccC-C-CC-----CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence            543 3 31     346999999987       1 11    577889999999999999873

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2.2e-09  Score=78.17  Aligned_cols=112  Identities=17%  Similarity=0.218  Sum_probs=83.7

Q ss_pred             HHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHHcCC---------CCceEE
Q 029836            7 EAQFFSMLLK-LINAKNTMEIGVFTGYSLLATALAIPDDG-KILALDITKEHYEKGLPIIQKAGV---------AHKIDF   75 (187)
Q Consensus         7 ~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~l~~~~~~~~-~v~~vd~~~~~~~~a~~~~~~~~~---------~~~i~~   75 (187)
                      ...++..|-. +.+.-+.||+|+|+|+.+..++..+...+ ..++||..++.++.+++++.+.--         ..+..+
T Consensus        69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i  148 (237)
T KOG1661|consen   69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI  148 (237)
T ss_pred             HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence            4455566553 45667999999999999999997665344 459999999999999999987541         145788


Q ss_pred             EeCCchHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           76 REGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        76 ~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +.||.....+.       ..+||.|++.+.....   -+.+...|++||.+++
T Consensus       149 vvGDgr~g~~e-------~a~YDaIhvGAaa~~~---pq~l~dqL~~gGrlli  191 (237)
T KOG1661|consen  149 VVGDGRKGYAE-------QAPYDAIHVGAAASEL---PQELLDQLKPGGRLLI  191 (237)
T ss_pred             EeCCccccCCc-------cCCcceEEEccCcccc---HHHHHHhhccCCeEEE
Confidence            88998765553       5699999998754333   3456678889988875

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.04  E-value=3.3e-09  Score=83.65  Aligned_cols=107  Identities=20%  Similarity=0.191  Sum_probs=91.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ...+++|||+-+|.|..++.+|..-.  .+|+++|++|.+++.+++|++.++....+..++||+.++.+..       +.
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-------~~  256 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-------GV  256 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-------cc
Confidence            34589999999999999999998743  3499999999999999999999999888999999999887753       57


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +|-|++..+ .....++..+...+++||++.+.+...
T Consensus       257 aDrIim~~p-~~a~~fl~~A~~~~k~~g~iHyy~~~~  292 (341)
T COG2520         257 ADRIIMGLP-KSAHEFLPLALELLKDGGIIHYYEFVP  292 (341)
T ss_pred             CCEEEeCCC-CcchhhHHHHHHHhhcCcEEEEEeccc
Confidence            999999764 344577888889999999999876554

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=2.7e-09  Score=80.58  Aligned_cols=112  Identities=16%  Similarity=0.165  Sum_probs=85.6

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      +++-.++...++.+|+|-|+|+|..+.++++..++.++++..|..+...+.|++-++..+..+++++.+.|....--...
T Consensus        95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k  174 (314)
T KOG2915|consen   95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK  174 (314)
T ss_pred             HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence            34445557788899999999999999999999988899999999999999999999999999999999988764211110


Q ss_pred             hcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCe-EEE
Q 029836           89 QDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGG-VIG  127 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG-~lv  127 (187)
                           ...+|.||+|.+..  -..+..+.+.||.+| +++
T Consensus       175 -----s~~aDaVFLDlPaP--w~AiPha~~~lk~~g~r~c  207 (314)
T KOG2915|consen  175 -----SLKADAVFLDLPAP--WEAIPHAAKILKDEGGRLC  207 (314)
T ss_pred             -----ccccceEEEcCCCh--hhhhhhhHHHhhhcCceEE
Confidence                 45799999997521  122333344666555 444

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.04  E-value=3.3e-10  Score=83.56  Aligned_cols=159  Identities=13%  Similarity=0.180  Sum_probs=97.8

Q ss_pred             HHHHHHHhhcC---CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            9 QFFSMLLKLIN---AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         9 ~~l~~l~~~~~---~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      .++.+++....   -+++||+|||+|..+..+-..   ..++++||+|+.|+++|.+.    ++  .=++.+.++..+++
T Consensus       112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eK----g~--YD~L~~Aea~~Fl~  182 (287)
T COG4976         112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEK----GL--YDTLYVAEAVLFLE  182 (287)
T ss_pred             HHHHHHHHhccCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhc----cc--hHHHHHHHHHHHhh
Confidence            44444444332   469999999999988876654   35899999999999988652    11  22445666666666


Q ss_pred             HHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHH
Q 029836           86 QLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKA  162 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (187)
                      ..     +.+.||+|..-..   ......+|-.+..+|+|||.+.|+-=.-.+.. .=...++.|+.     .-+.+.+.
T Consensus       183 ~~-----~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~-~f~l~ps~RyA-----H~~~YVr~  251 (287)
T COG4976         183 DL-----TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG-GFVLGPSQRYA-----HSESYVRA  251 (287)
T ss_pred             hc-----cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC-Ceecchhhhhc-----cchHHHHH
Confidence            44     2578999985322   34556677778899999999998522111110 00112233332     22334444


Q ss_pred             HhcCCCeeEEEe-----------ecCCeeEEEEEcC
Q 029836          163 LAVDPRIEICQI-----------SIADGVTLCRRIG  187 (187)
Q Consensus       163 ~~~~~~~~~~~~-----------p~~~G~~i~~k~~  187 (187)
                      .....+++.+-.           |+..++.|++|+.
T Consensus       252 ~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~~  287 (287)
T COG4976         252 LLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKKA  287 (287)
T ss_pred             HHHhcCceEEEeecccchhhcCCCCCCceEEEecCC
Confidence            445556554433           6778888888863

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.03  E-value=8.9e-10  Score=83.86  Aligned_cols=99  Identities=19%  Similarity=0.231  Sum_probs=79.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..+.++|||||+|.|..+..+++..| +.+++..|. |+.++.+++       .++++++.+|..+.+|         . 
T Consensus        98 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P---------~-  158 (241)
T PF00891_consen   98 FSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLP---------V-  158 (241)
T ss_dssp             TTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCS---------S-
T ss_pred             ccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhhhc---------c-
Confidence            44567999999999999999999998 789999999 888888877       4799999999975443         3 


Q ss_pred             eeEEEEcCC-----CcccHHHHHHHHhcccCC--eEEEEeCcCCC
Q 029836           97 FDFVFVDAD-----KDNYVNYHKRLIELVKVG--GVIGYDNTLWG  134 (187)
Q Consensus        97 ~D~v~~d~~-----~~~~~~~~~~~~~~L~~g--G~lv~~~~~~~  134 (187)
                      +|++++-.-     .+.....++++.+.|+||  |.|++.+.+..
T Consensus       159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~  203 (241)
T PF00891_consen  159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP  203 (241)
T ss_dssp             ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred             ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence            999998653     445678899999999999  99998887654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.02  E-value=9.7e-09  Score=78.58  Aligned_cols=115  Identities=21%  Similarity=0.259  Sum_probs=92.9

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhc
Q 029836           14 LLKLINAKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQD   90 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~   90 (187)
                      |....+|-+||||.||.|...+..+...+. ..++...|.++..++..++.+++.|+.+.++|.++|+.+.  +..+   
T Consensus       130 L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l---  206 (311)
T PF12147_consen  130 LREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAAL---  206 (311)
T ss_pred             HHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhcc---
Confidence            334457889999999999999998888774 3689999999999999999999999987779999999874  3333   


Q ss_pred             ccCCCceeEEEEcCCCc------ccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           91 EKYHGTFDFVFVDADKD------NYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~~------~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                         ...++++++.+-.+      -....+.-+...+.|||++|..+--|+
T Consensus       207 ---~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH  253 (311)
T PF12147_consen  207 ---DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH  253 (311)
T ss_pred             ---CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence               56789999877522      134467777889999999999886654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.01  E-value=1.7e-09  Score=79.70  Aligned_cols=89  Identities=11%  Similarity=0.161  Sum_probs=64.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..+++..  ...++++|+++++++.+++        .+++++++|+.+.++...     +++||
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~~-----~~sfD   77 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAFP-----DKSFD   77 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhcccccC-----CCCcC
Confidence            56799999999999998887653  4578999999999887754        246788888765333221     46899


Q ss_pred             EEEEcCC---CcccHHHHHHHHhcccC
Q 029836           99 FVFVDAD---KDNYVNYHKRLIELVKV  122 (187)
Q Consensus        99 ~v~~d~~---~~~~~~~~~~~~~~L~~  122 (187)
                      +|++...   ..+...+++++.+.+++
T Consensus        78 ~Vi~~~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        78 YVILSQTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             EEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence            9998754   33455667776665543

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.01  E-value=1.5e-08  Score=84.84  Aligned_cols=103  Identities=16%  Similarity=0.161  Sum_probs=83.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ....+||||||.|.++..+|...| +..++|+|+....+..+.+.....++ .|+.++.+++..+...+.     ++++|
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~-----~~sv~  419 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLP-----NNSLD  419 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcC-----ccccc
Confidence            356889999999999999999987 78999999999999988888888887 689998888754444442     46788


Q ss_pred             EEEEc---CCC--c------ccHHHHHHHHhcccCCeEEEE
Q 029836           99 FVFVD---ADK--D------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        99 ~v~~d---~~~--~------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|++.   +|+  .      -.+.+++.+.+.|++||.+.+
T Consensus       420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~  460 (506)
T PRK01544        420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF  460 (506)
T ss_pred             EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence            88764   441  1      137899999999999998876

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.01  E-value=5.8e-09  Score=83.61  Aligned_cols=111  Identities=15%  Similarity=0.226  Sum_probs=71.3

Q ss_pred             CCCHHHHHHHHHHH-hhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC
Q 029836            2 MTSPDEAQFFSMLL-KLIN--AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG   78 (187)
Q Consensus         2 ~~~~~~~~~l~~l~-~~~~--~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~   78 (187)
                      |+++.+.+-|...+ ...+  +..+||+.||.|..++.++..   ..+|+|||+++++++.|++|.+.+++ ++++|+.+
T Consensus       176 QvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~  251 (352)
T PF05958_consen  176 QVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRG  251 (352)
T ss_dssp             -SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE-
T ss_pred             cCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEe
Confidence            55666665555544 3332  348999999999999999976   46899999999999999999999998 68999999


Q ss_pred             CchHHHHHHhhc---------ccCCCceeEEEEcCCCcccH-HHHHHH
Q 029836           79 PALPLLDQLIQD---------EKYHGTFDFVFVDADKDNYV-NYHKRL  116 (187)
Q Consensus        79 d~~~~l~~~~~~---------~~~~~~~D~v~~d~~~~~~~-~~~~~~  116 (187)
                      ++.++...+...         ......+|+|++|+++.... ..++.+
T Consensus       252 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~  299 (352)
T PF05958_consen  252 DAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI  299 (352)
T ss_dssp             -SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred             eccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence            887654332100         00023689999999966544 344444

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.00  E-value=4.4e-09  Score=86.45  Aligned_cols=100  Identities=12%  Similarity=0.060  Sum_probs=78.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           20 AKNTMEIGVFTGYSLLATALAI---PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~---~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .+.|+|+|||+|..+...+++.   ....+|++||.++.+....++.++.++..++|+++++|+.++-.        ..+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pek  258 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--------PEK  258 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS-
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--------CCc
Confidence            4679999999999988776654   12469999999999998888888889998999999999987643        468


Q ss_pred             eeEEEEcCC-----CcccHHHHHHHHhcccCCeEEE
Q 029836           97 FDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        97 ~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      .|+|+.-.-     .+-.++.+....+.|||||+++
T Consensus       259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             eeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            999986532     4566778888889999999998

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.00  E-value=8.9e-09  Score=79.20  Aligned_cols=88  Identities=17%  Similarity=0.063  Sum_probs=69.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +++...+.+...+...+.++|||||||+|..+..+++.   ..+++++|+++.+++.+++++..   .++++++++|+.+
T Consensus        13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~   86 (258)
T PRK14896         13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALK   86 (258)
T ss_pred             CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEecccc
Confidence            34555555555555667789999999999999999986   36899999999999999988864   2689999999975


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      ..         ...+|.|+...+
T Consensus        87 ~~---------~~~~d~Vv~NlP  100 (258)
T PRK14896         87 VD---------LPEFNKVVSNLP  100 (258)
T ss_pred             CC---------chhceEEEEcCC
Confidence            41         135799988765

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.99  E-value=5.5e-10  Score=82.93  Aligned_cols=108  Identities=17%  Similarity=0.159  Sum_probs=77.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-HHHHhhcccCCCce
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LDQLIQDEKYHGTF   97 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~~~   97 (187)
                      +.+|||||||.|.....+++..+. +.++.++|.+|.+++..+++.....  .++.....|.... +..-    ...+++
T Consensus        72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~----~~~~sv  145 (264)
T KOG2361|consen   72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEP----PEEGSV  145 (264)
T ss_pred             hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCC----CCcCcc
Confidence            347999999999999999987662 2789999999999998887665432  3444444443221 1111    125678


Q ss_pred             eEEEEc-----CCCcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           98 DFVFVD-----ADKDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        98 D~v~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      |+|.+-     ..++.....++.+.++|||||.|++-|+-.
T Consensus       146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~  186 (264)
T KOG2361|consen  146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR  186 (264)
T ss_pred             ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence            877432     236778999999999999999999988754

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.98  E-value=2.4e-09  Score=83.63  Aligned_cols=102  Identities=21%  Similarity=0.255  Sum_probs=79.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-HHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~   95 (187)
                      +.+.+.|||+|||+|..+.+.|++.  ..+|++||.+.-+ +.|++.+..+++.+.+++++|..++. +|        .+
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP--------~e  126 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP--------VE  126 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC--------cc
Confidence            5678999999999999999999874  4799999998755 99999999999988899999999875 33        36


Q ss_pred             ceeEEEEcCC--CcccHHHHHHHH----hcccCCeEEEEe
Q 029836           96 TFDFVFVDAD--KDNYVNYHKRLI----ELVKVGGVIGYD  129 (187)
Q Consensus        96 ~~D~v~~d~~--~~~~~~~~~~~~----~~L~~gG~lv~~  129 (187)
                      +.|+|+....  .--+...++.+.    +.|+|||.++=+
T Consensus       127 KVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~  166 (346)
T KOG1499|consen  127 KVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD  166 (346)
T ss_pred             ceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence            8999997643  111122222222    689999999643

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.96  E-value=1.2e-09  Score=81.24  Aligned_cols=111  Identities=11%  Similarity=0.145  Sum_probs=77.2

Q ss_pred             HHHHHHHHhhcCCC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            8 AQFFSMLLKLINAK-NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         8 ~~~l~~l~~~~~~~-~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      -.++..++...... .++|+|||+|.-++.+++.+   .+|+++|+++.+++.|++..+...+....++...+..+++..
T Consensus        21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~   97 (261)
T KOG3010|consen   21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG   97 (261)
T ss_pred             HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC
Confidence            35677777776655 88999999997777777764   479999999999998887654433322233333333333321


Q ss_pred             HhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCe-EEEE
Q 029836           87 LIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGG-VIGY  128 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG-~lv~  128 (187)
                             +++.|+|.+.-.  .-+...++..+.++||+.| ++.+
T Consensus        98 -------e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen   98 -------EESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             -------CcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence                   579999986432  3456889999999999777 6655

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.95  E-value=3.4e-09  Score=77.71  Aligned_cols=84  Identities=24%  Similarity=0.255  Sum_probs=72.9

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ....+..|+|.-||.|+.++.++..   ...|+++|++|..+..|+.|++-.|.+++++|++||..++...+...   ..
T Consensus        91 ~~~~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~---K~  164 (263)
T KOG2730|consen   91 ACMNAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD---KI  164 (263)
T ss_pred             HhcCcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh---hh
Confidence            3447889999999999999999876   45799999999999999999999999999999999999988877544   45


Q ss_pred             ceeEEEEcCC
Q 029836           96 TFDFVFVDAD  105 (187)
Q Consensus        96 ~~D~v~~d~~  105 (187)
                      .+|+||..++
T Consensus       165 ~~~~vf~spp  174 (263)
T KOG2730|consen  165 KYDCVFLSPP  174 (263)
T ss_pred             eeeeeecCCC
Confidence            6889998764

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.95  E-value=1.5e-08  Score=78.50  Aligned_cols=100  Identities=14%  Similarity=-0.006  Sum_probs=69.9

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      ++...+.+...+...++.+|||||||+|..+..++...   .+++++|+++.+++.+++++..    ++++++++|+.++
T Consensus        27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~   99 (272)
T PRK00274         27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV   99 (272)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC
Confidence            34444444444445567899999999999999999873   4899999999999999887743    5899999999765


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHH
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLI  117 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~  117 (187)
                      ...       .-.+|.|+...+..-....+..+.
T Consensus       100 ~~~-------~~~~~~vv~NlPY~iss~ii~~~l  126 (272)
T PRK00274        100 DLS-------ELQPLKVVANLPYNITTPLLFHLL  126 (272)
T ss_pred             CHH-------HcCcceEEEeCCccchHHHHHHHH
Confidence            211       111477777765333344444444

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.91  E-value=2.9e-08  Score=78.04  Aligned_cols=105  Identities=17%  Similarity=0.190  Sum_probs=85.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHH--HHHcCC----CCceEEEeCCchHHHHHHhhcc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI--IQKAGV----AHKIDFREGPALPLLDQLIQDE   91 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~--~~~~~~----~~~i~~~~~d~~~~l~~~~~~~   91 (187)
                      ...+++|-+|.|.|.-.+++.+. |.-.+++-||.+|++++.++++  ++..+.    .+|++++..|+..+++..    
T Consensus       288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a----  362 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA----  362 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence            45679999999999999999875 6568999999999999999843  333322    278999999999999887    


Q ss_pred             cCCCceeEEEEcCC-C-------cccHHHHHHHHhcccCCeEEEEe
Q 029836           92 KYHGTFDFVFVDAD-K-------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        92 ~~~~~~D~v~~d~~-~-------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                        .+.||+|++|-. +       -...+|+..+.+.|+++|.+++.
T Consensus       363 --~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ  406 (508)
T COG4262         363 --ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ  406 (508)
T ss_pred             --cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence              569999999964 1       12367888889999999999974

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.91  E-value=3.7e-09  Score=77.62  Aligned_cols=100  Identities=21%  Similarity=0.177  Sum_probs=73.3

Q ss_pred             HHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcc
Q 029836           14 LLKLIN--AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDE   91 (187)
Q Consensus        14 l~~~~~--~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~   91 (187)
                      |..+..  +.-|||||||+|.++..+.+.   +...+++|+|+.|++.|.+  +..    .-.++.+|.-+-+|--    
T Consensus        43 LLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~--~e~----egdlil~DMG~Glpfr----  109 (270)
T KOG1541|consen   43 LLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVE--REL----EGDLILCDMGEGLPFR----  109 (270)
T ss_pred             HhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHH--hhh----hcCeeeeecCCCCCCC----
Confidence            334444  678999999999999887754   5789999999999999986  221    1346677776555532    


Q ss_pred             cCCCceeEEEEcCC--------------CcccHHHHHHHHhcccCCeEEEE
Q 029836           92 KYHGTFDFVFVDAD--------------KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        92 ~~~~~~D~v~~d~~--------------~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                        .++||-++.-..              +.....||..+...|++|+..++
T Consensus       110 --pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~  158 (270)
T KOG1541|consen  110 --PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL  158 (270)
T ss_pred             --CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence              689999875421              12245678889999999998886

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.88  E-value=1.5e-08  Score=78.87  Aligned_cols=82  Identities=13%  Similarity=0.101  Sum_probs=68.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++..+||.+||.|.-+..+++.+++.++|+++|.++++++.+++.+..   ..++++++++..++...+.. +  ..++
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~-~--~~~v   91 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE-G--LGKV   91 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc-C--CCcc
Confidence            3456999999999999999999987679999999999999999998865   36899999999887555421 1  2379


Q ss_pred             eEEEEcCC
Q 029836           98 DFVFVDAD  105 (187)
Q Consensus        98 D~v~~d~~  105 (187)
                      |.|++|..
T Consensus        92 DgIl~DLG   99 (296)
T PRK00050         92 DGILLDLG   99 (296)
T ss_pred             CEEEECCC
Confidence            99999854

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.87  E-value=4.3e-08  Score=75.21  Aligned_cols=99  Identities=16%  Similarity=0.081  Sum_probs=68.6

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .+...+-+-..+...++.+|||||||+|..+..+++..   .+++++|+++.+++.+++++..   ..+++++++|+.+.
T Consensus        14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~   87 (253)
T TIGR00755        14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKV   87 (253)
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcC
Confidence            33444434444445567899999999999999999874   4699999999999999887743   36899999999764


Q ss_pred             HHHHhhcccCCCcee---EEEEcCCCcccHHHHHHHH
Q 029836           84 LDQLIQDEKYHGTFD---FVFVDADKDNYVNYHKRLI  117 (187)
Q Consensus        84 l~~~~~~~~~~~~~D---~v~~d~~~~~~~~~~~~~~  117 (187)
                      ..         ..+|   +|+.+.+..-....+..+.
T Consensus        88 ~~---------~~~d~~~~vvsNlPy~i~~~il~~ll  115 (253)
T TIGR00755        88 DL---------PDFPKQLKVVSNLPYNISSPLIFKLL  115 (253)
T ss_pred             Ch---------hHcCCcceEEEcCChhhHHHHHHHHh
Confidence            22         1234   6776655333344444444

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK04148 hypothetical protein; Provisional

Probab=98.86  E-value=5.8e-08  Score=66.71  Aligned_cols=103  Identities=10%  Similarity=0.059  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            7 EAQFFSMLLKLINAKNTMEIGVFTGY-SLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~-~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      .+++|.......+++++||||||+|. .+..|++.   +..|+++|+++..++.++++        .++++.+|..+.-.
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~   72 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNL   72 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCH
Confidence            44555554444456889999999997 66666643   57999999999988777653        36788888876544


Q ss_pred             HHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           86 QLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+      -+.+|+|+.--++.+....+..+.+.+  |.-+++
T Consensus        73 ~~------y~~a~liysirpp~el~~~~~~la~~~--~~~~~i  107 (134)
T PRK04148         73 EI------YKNAKLIYSIRPPRDLQPFILELAKKI--NVPLII  107 (134)
T ss_pred             HH------HhcCCEEEEeCCCHHHHHHHHHHHHHc--CCCEEE
Confidence            44      467899997665555555555555433  444443

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.85  E-value=1.7e-08  Score=73.99  Aligned_cols=124  Identities=15%  Similarity=0.090  Sum_probs=83.9

Q ss_pred             HHHHHHHHHhhcC-CC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCce-EEEeCCchHH
Q 029836            7 EAQFFSMLLKLIN-AK-NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKI-DFREGPALPL   83 (187)
Q Consensus         7 ~~~~l~~l~~~~~-~~-~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i-~~~~~d~~~~   83 (187)
                      ..-++..|....+ .. +|||||||+|-=+.+++..+| ..+-...|.++......+..+...+++ |+ .-+.-|..+.
T Consensus        11 k~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~-Nv~~P~~lDv~~~   88 (204)
T PF06080_consen   11 KDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLP-NVRPPLALDVSAP   88 (204)
T ss_pred             HhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCc-ccCCCeEeecCCC
Confidence            3445555555443 33 499999999999999999998 688888999999988888888887763 32 1122232221


Q ss_pred             -HHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           84 -LDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        84 -l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                       .+.........++||.||.-..     ......+|+.+.++|++||.|++=..+
T Consensus        89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF  143 (204)
T PF06080_consen   89 PWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF  143 (204)
T ss_pred             CCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence             1111000001468999997532     345678899999999999999874433

The function of this family is unknown.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.81  E-value=3.5e-08  Score=78.22  Aligned_cols=107  Identities=16%  Similarity=0.165  Sum_probs=70.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC---------CCCceEEEeCCchH-HHHHHh
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG---------VAHKIDFREGPALP-LLDQLI   88 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~---------~~~~i~~~~~d~~~-~l~~~~   88 (187)
                      ++.+|||+|||-|.-..=+..+ . -..++|+|+++..++.|+++.++..         ..-...++.+|... .+....
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~-~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA-K-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            5679999999988855555544 2 4799999999999999999994322         11245777777653 222221


Q ss_pred             hcccCCCceeEEEEcCC-------CcccHHHHHHHHhcccCCeEEEEe
Q 029836           89 QDEKYHGTFDFVFVDAD-------KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..  ...+||+|=+.-.       .+....++..+...|+|||++|..
T Consensus       140 ~~--~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT  185 (331)
T PF03291_consen  140 PP--RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT  185 (331)
T ss_dssp             SS--TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cc--cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            11  0258999976643       334567999999999999999863

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=3.9e-08  Score=80.31  Aligned_cols=121  Identities=17%  Similarity=0.186  Sum_probs=90.6

Q ss_pred             CCCCHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEE
Q 029836            1 MMTSPDEAQFFSMLLK----LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFR   76 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~   76 (187)
                      +|++....+.|+..+.    +...+.++|+.||+|.+++.+++.   ..+|++||++++.++.|++|...+|. .|.+|+
T Consensus       361 FQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi  436 (534)
T KOG2187|consen  361 FQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGI-SNATFI  436 (534)
T ss_pred             hccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCc-cceeee
Confidence            3566667777777664    345578999999999999999876   47899999999999999999999999 799999


Q ss_pred             eCCchHHHHHHhhcccCCCcee-EEEEcCCCccc-HHHHHHHHhcccCCeEEE
Q 029836           77 EGPALPLLDQLIQDEKYHGTFD-FVFVDADKDNY-VNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        77 ~~d~~~~l~~~~~~~~~~~~~D-~v~~d~~~~~~-~~~~~~~~~~L~~gG~lv  127 (187)
                      +|.+++.++.+....  -++-+ ++++|+++... ..++..+++.-++.-.+.
T Consensus       437 ~gqaE~~~~sl~~~~--~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvy  487 (534)
T KOG2187|consen  437 VGQAEDLFPSLLTPC--CDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVY  487 (534)
T ss_pred             ecchhhccchhcccC--CCCCceEEEECCCcccccHHHHHHHHhccCccceEE
Confidence            999999888875332  12446 77888885554 445555544433444443

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.80  E-value=4.9e-08  Score=75.10  Aligned_cols=103  Identities=16%  Similarity=0.170  Sum_probs=67.7

Q ss_pred             CCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH-HcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           20 AKNTMEIGVFTGY-SLLATALAIPDDGKILALDITKEHYEKGLPIIQ-KAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        20 ~~~vLeiG~g~G~-~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~-~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      |++|+=||||.=- +++.+++....+..++++|+++++.+.+++.++ ..++..+++|+.+|..+....       -..|
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-------l~~~  193 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-------LKEY  193 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----------
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-------cccC
Confidence            5699999999544 556666544446789999999999999999888 567778999999998765332       2579


Q ss_pred             eEEEEcCC----CcccHHHHHHHHhcccCCeEEEEe
Q 029836           98 DFVFVDAD----KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        98 D~v~~d~~----~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++.+-    ++.-.+.++.+.+.+++|..+++-
T Consensus       194 DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  194 DVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             CEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            99999875    347789999999999999999974

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=98.79  E-value=7.8e-08  Score=73.60  Aligned_cols=143  Identities=17%  Similarity=0.187  Sum_probs=111.9

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC---CCceEEEeCCchHHHHHHhhc
Q 029836           14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV---AHKIDFREGPALPLLDQLIQD   90 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~l~~~~~~   90 (187)
                      ++++.+|+++|-||-|.|...+..+++ +.-..+.-+|++...++..+++++..-.   .+++.++.||...++....  
T Consensus       116 l~s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~--  192 (337)
T KOG1562|consen  116 LCSHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK--  192 (337)
T ss_pred             cccCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc--
Confidence            456778999999999999999998877 5347899999999999999999986633   2789999999999988774  


Q ss_pred             ccCCCceeEEEEcCCC-------cccHHHHHHHHhcccCCeEEEE-eCcCCCccccCCCCCCchhhhhhHHHHHHHHHHH
Q 029836           91 EKYHGTFDFVFVDADK-------DNYVNYHKRLIELVKVGGVIGY-DNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKA  162 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (187)
                         .++||+|+.|.+.       .....+++.+.+.||++|+++. .+..|-              ....-...+.|-..
T Consensus       193 ---~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl--------------~~~~i~e~r~~~~~  255 (337)
T KOG1562|consen  193 ---ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWL--------------HLDYIKEGRSFCYV  255 (337)
T ss_pred             ---cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehH--------------HHHHHHHHHHhHHH
Confidence               5799999999761       2235688889999999999985 333331              12344566777777


Q ss_pred             HhcCCCeeEEEeec
Q 029836          163 LAVDPRIEICQISI  176 (187)
Q Consensus       163 ~~~~~~~~~~~~p~  176 (187)
                      +.....+-.+..|+
T Consensus       256 ~f~~t~ya~ttvPT  269 (337)
T KOG1562|consen  256 IFDLTAYAITTVPT  269 (337)
T ss_pred             hcCccceeeecCCC
Confidence            88777788888774

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=4.8e-08  Score=67.28  Aligned_cols=77  Identities=25%  Similarity=0.327  Sum_probs=64.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ..++.++|+|||.|..+...+  .+....++++|++|++++.+..|..+..+  ++.+.++|..+....       .+.|
T Consensus        47 iEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~-------~g~f  115 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELK-------GGIF  115 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhcc-------CCeE
Confidence            467899999999999874433  45468899999999999999999998776  678999998776543       5789


Q ss_pred             eEEEEcCC
Q 029836           98 DFVFVDAD  105 (187)
Q Consensus        98 D~v~~d~~  105 (187)
                      |.++++++
T Consensus       116 DtaviNpp  123 (185)
T KOG3420|consen  116 DTAVINPP  123 (185)
T ss_pred             eeEEecCC
Confidence            99999987

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=4.8e-07  Score=68.95  Aligned_cols=86  Identities=15%  Similarity=0.066  Sum_probs=65.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-HHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~   95 (187)
                      ..+..+|||||+|.|..|..+++.   ..+|+++|+++.++...++.+.   ..++++++++|+..+ ++.+      . 
T Consensus        28 ~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l------~-   94 (259)
T COG0030          28 ISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSL------A-   94 (259)
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhh------c-
Confidence            445679999999999999999987   4689999999999999888775   237999999999875 3332      1 


Q ss_pred             ceeEEEEcCCCcccHHHHHH
Q 029836           96 TFDFVFVDADKDNYVNYHKR  115 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~  115 (187)
                      .++.|+.+.+..-...++..
T Consensus        95 ~~~~vVaNlPY~Isspii~k  114 (259)
T COG0030          95 QPYKVVANLPYNISSPILFK  114 (259)
T ss_pred             CCCEEEEcCCCcccHHHHHH
Confidence            57888888764333343333

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.75  E-value=7e-08  Score=71.52  Aligned_cols=98  Identities=20%  Similarity=0.207  Sum_probs=68.2

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEE
Q 029836           23 TMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFV  102 (187)
Q Consensus        23 vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~  102 (187)
                      |.||||-.|+...++++... ..+++++|+++..++.|+++++..++.++++++.+|..+.++.       .+..|.|++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivI   72 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVI   72 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEE
T ss_pred             CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEE
Confidence            68999999999999998743 5789999999999999999999999999999999999887763       233788887


Q ss_pred             cCC-CcccHHHHHHHHhcccCCeEEEE
Q 029836          103 DAD-KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus       103 d~~-~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+. -.-..+.++.....++....+|+
T Consensus        73 AGMGG~lI~~ILe~~~~~~~~~~~lIL   99 (205)
T PF04816_consen   73 AGMGGELIIEILEAGPEKLSSAKRLIL   99 (205)
T ss_dssp             EEE-HHHHHHHHHHTGGGGTT--EEEE
T ss_pred             ecCCHHHHHHHHHhhHHHhccCCeEEE
Confidence            653 22344455554444444444443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=98.73  E-value=7.1e-08  Score=73.21  Aligned_cols=126  Identities=17%  Similarity=0.165  Sum_probs=82.1

Q ss_pred             CCHHHHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHh---hCC-CCCEEEEEeCCc--------------------
Q 029836            3 TSPDEAQFFSMLLKL----INAKNTMEIGVFTGYSLLATAL---AIP-DDGKILALDITK--------------------   54 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~----~~~~~vLeiG~g~G~~~~~l~~---~~~-~~~~v~~vd~~~--------------------   54 (187)
                      ++......|+.++..    .-|..++|+||..|.++..++.   .+. .+-++++.|.-+                    
T Consensus        54 ~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~  133 (248)
T PF05711_consen   54 IGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHE  133 (248)
T ss_dssp             SHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCG
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhh
Confidence            344455555555543    3467999999999998876543   222 235788888411                    


Q ss_pred             ------hHHHHHHHHHHHcCC-CCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-CcccHHHHHHHHhcccCCeEE
Q 029836           55 ------EHYEKGLPIIQKAGV-AHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-KDNYVNYHKRLIELVKVGGVI  126 (187)
Q Consensus        55 ------~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-~~~~~~~~~~~~~~L~~gG~l  126 (187)
                            ...+..++++++.++ .++++++.|...+.++...     .+++-++.+|++ .+.....++.+.+.|.+||+|
T Consensus       134 ~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p-----~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiI  208 (248)
T PF05711_consen  134 YNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAP-----IERIALLHLDCDLYESTKDALEFLYPRLSPGGII  208 (248)
T ss_dssp             CCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-T-----T--EEEEEE---SHHHHHHHHHHHGGGEEEEEEE
T ss_pred             cccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCC-----CccEEEEEEeccchHHHHHHHHHHHhhcCCCeEE
Confidence                  134556666766665 4689999999999888653     467889999987 667788999999999999999


Q ss_pred             EEeCcCC
Q 029836          127 GYDNTLW  133 (187)
Q Consensus       127 v~~~~~~  133 (187)
                      ++||+..
T Consensus       209 i~DDY~~  215 (248)
T PF05711_consen  209 IFDDYGH  215 (248)
T ss_dssp             EESSTTT
T ss_pred             EEeCCCC
Confidence            9999765

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PRK10742 putative methyltransferase; Provisional

Probab=98.73  E-value=1.4e-07  Score=71.29  Aligned_cols=88  Identities=9%  Similarity=0.078  Sum_probs=72.8

Q ss_pred             HHHHHHHhhcCCC--EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc------CC--CCceEEEeC
Q 029836            9 QFFSMLLKLINAK--NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA------GV--AHKIDFREG   78 (187)
Q Consensus         9 ~~l~~l~~~~~~~--~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~------~~--~~~i~~~~~   78 (187)
                      +.|...+...++.  +|||..+|.|..+..++..   +++|+++|-++......+++++..      +.  ..+++++++
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~  152 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence            4455555555655  8999999999999999975   577999999999999999999985      22  257999999


Q ss_pred             CchHHHHHHhhcccCCCceeEEEEcCC
Q 029836           79 PALPLLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        79 d~~~~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      |+.+++...      .++||+||+|+.
T Consensus       153 da~~~L~~~------~~~fDVVYlDPM  173 (250)
T PRK10742        153 SSLTALTDI------TPRPQVVYLDPM  173 (250)
T ss_pred             cHHHHHhhC------CCCCcEEEECCC
Confidence            999999875      458999999987

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.72  E-value=4.4e-08  Score=70.01  Aligned_cols=78  Identities=18%  Similarity=0.172  Sum_probs=60.9

Q ss_pred             EEEeCCchHHHHHHHHHHHc--CCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccC
Q 029836           48 LALDITKEHYEKGLPIIQKA--GVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKV  122 (187)
Q Consensus        48 ~~vd~~~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~  122 (187)
                      +++|+++++++.|+++.+..  +...+++++++|+.+. +--      +++||+|++...   ..+....++++.+.|||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~~------~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp   73 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PFD------DCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP   73 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CCC------CCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence            48999999999998776532  2235799999999764 311      568999987643   45678899999999999


Q ss_pred             CeEEEEeCcC
Q 029836          123 GGVIGYDNTL  132 (187)
Q Consensus       123 gG~lv~~~~~  132 (187)
                      ||.+++.+..
T Consensus        74 GG~l~i~d~~   83 (160)
T PLN02232         74 GSRVSILDFN   83 (160)
T ss_pred             CeEEEEEECC
Confidence            9999987764

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.68  E-value=1e-07  Score=74.27  Aligned_cols=99  Identities=15%  Similarity=0.183  Sum_probs=79.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+.+.|||+|||+|..+.+.+.+.  ..+|.+||.+ ++.+.|++.++.+.+.++|.++.|..++.-  +      .++.
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--L------PEk~  244 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE--L------PEKV  244 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc--C------chhc
Confidence            357899999999999998888763  4799999996 488899999999999999999999987751  1      4688


Q ss_pred             eEEEEcCC-----CcccHHHHHHHHhcccCCeEEE
Q 029836           98 DFVFVDAD-----KDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        98 D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |+++..+.     .+...+-+-.+++.|+|.|.+.
T Consensus       245 DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  245 DVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             cEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence            99998754     3444444555678999999886

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.67  E-value=2.2e-07  Score=68.91  Aligned_cols=109  Identities=19%  Similarity=0.214  Sum_probs=67.1

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH-------HcCC-CCceEEEeCCchHH--
Q 029836           14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ-------KAGV-AHKIDFREGPALPL--   83 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~-------~~~~-~~~i~~~~~d~~~~--   83 (187)
                      .+...+....+|+|||.|......+...+ ..+.+|||+.+...+.|+...+       ..|. ..++++.++|..+.  
T Consensus        37 ~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~  115 (205)
T PF08123_consen   37 ELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF  115 (205)
T ss_dssp             HTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH
T ss_pred             HhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh
Confidence            34556678999999999999888776554 5679999999998877765443       3333 35788899998653  


Q ss_pred             HHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEe
Q 029836           84 LDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ....      -..-|+||++..  .+.....+......||+|..+|-.
T Consensus       116 ~~~~------~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  116 VKDI------WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             HHHH------GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred             Hhhh------hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence            2332      135699999865  344555666777889999998853

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.67  E-value=2.3e-07  Score=70.29  Aligned_cols=83  Identities=18%  Similarity=0.099  Sum_probs=68.4

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhc
Q 029836           11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD   90 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~   90 (187)
                      |..-+...++..|||||.|+|..|.-+++.   +.+|+++|+++.++....+.++....+.+.++++||....-      
T Consensus        50 I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d------  120 (315)
T KOG0820|consen   50 IVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD------  120 (315)
T ss_pred             HHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC------
Confidence            333345567789999999999999999987   57999999999999999999988777789999999987531      


Q ss_pred             ccCCCceeEEEEcCC
Q 029836           91 EKYHGTFDFVFVDAD  105 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~  105 (187)
                         ...||.++.+.+
T Consensus       121 ---~P~fd~cVsNlP  132 (315)
T KOG0820|consen  121 ---LPRFDGCVSNLP  132 (315)
T ss_pred             ---CcccceeeccCC
Confidence               246899988655

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=98.65  E-value=8.9e-07  Score=63.85  Aligned_cols=147  Identities=20%  Similarity=0.139  Sum_probs=99.6

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAI---PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~---~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      +|.-.-.++.|+...+|..|+|+|+..|.+++++|...   +...+|+++|++-...+-+...      .+++.|+.+++
T Consensus        54 ~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss  127 (237)
T COG3510          54 SPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSS  127 (237)
T ss_pred             CHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCC
Confidence            44555677888889999999999999999999988643   2236899999987654322111      27899999988


Q ss_pred             hHHH--HH--HhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHH
Q 029836           81 LPLL--DQ--LIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRD  154 (187)
Q Consensus        81 ~~~l--~~--~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (187)
                      .+..  .+  .+++   .-+-=+|+.|.+  .++....++...++|.-|-++++.|....++.. |..+  -+.....++
T Consensus       128 ~dpai~eqi~~~~~---~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~-~~~p--~~~g~gP~~  201 (237)
T COG3510         128 TDPAIAEQIRRLKN---EYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPG-PVLP--WRFGGGPYE  201 (237)
T ss_pred             CCHHHHHHHHHHhc---CCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCC-cccc--hhcCCChHH
Confidence            6531  11  1221   112345566665  456778888889999999999999888877653 1211  123455666


Q ss_pred             HHHHHHHH
Q 029836          155 FVQELNKA  162 (187)
Q Consensus       155 ~~~~~~~~  162 (187)
                      ++.+|.+.
T Consensus       202 AVe~ylr~  209 (237)
T COG3510         202 AVEAYLRE  209 (237)
T ss_pred             HHHHHHHh
Confidence            77666433

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.65  E-value=4.5e-07  Score=68.64  Aligned_cols=134  Identities=13%  Similarity=0.015  Sum_probs=87.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      +..++||||+|.|..|..++..+   .+|++.|.|+.|....    ++.    .++++.  ..++ ..-      +.+||
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL----~~k----g~~vl~--~~~w-~~~------~~~fD  153 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRL----SKK----GFTVLD--IDDW-QQT------DFKFD  153 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHH----HhC----CCeEEe--hhhh-hcc------CCceE
Confidence            46789999999999999999775   4699999999986543    333    334442  2222 221      46899


Q ss_pred             EEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCcc-ccCCC--C-CC---chhhhhhHHHHHHHHHHHHhcCCC
Q 029836           99 FVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGGS-VVAPP--D-AD---LDEHFLYLRDFVQELNKALAVDPR  168 (187)
Q Consensus        99 ~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~-~~~~~--~-~~---~~~~~~~~~~~~~~~~~~~~~~~~  168 (187)
                      +|-+-.-   .......++.+++.|+|+|.+++.=++.-.+ +....  + .+   .+-....+-+.+..+. .+....+
T Consensus       154 vIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~-~v~~p~G  232 (265)
T PF05219_consen  154 VISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV-NVFEPAG  232 (265)
T ss_pred             EEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH-HHHHhcC
Confidence            9976543   4567789999999999999999876665433 22211  1 11   1111234556666777 5556666


Q ss_pred             eeEEE
Q 029836          169 IEICQ  173 (187)
Q Consensus       169 ~~~~~  173 (187)
                      |+...
T Consensus       233 F~v~~  237 (265)
T PF05219_consen  233 FEVER  237 (265)
T ss_pred             CEEEE
Confidence            65433

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.61  E-value=1.4e-07  Score=71.08  Aligned_cols=94  Identities=12%  Similarity=0.191  Sum_probs=58.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceE-EEeCCchHH-HHHHhhcccCCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKID-FREGPALPL-LDQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~~-l~~~~~~~~~~~   95 (187)
                      .+.+++||+|||+|.++..+++. + ..+|+++|+++.++..   .+++.   +++. +...+.... ......   +-.
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~---~l~~~---~~v~~~~~~ni~~~~~~~~~~---d~~  142 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAE---KLRQD---ERVKVLERTNIRYVTPADIFP---DFA  142 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHH---HHhcC---CCeeEeecCCcccCCHhHcCC---Cce
Confidence            35679999999999999999986 3 4789999999977654   12221   2322 222222211 111100   124


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+|++|+..     ...+..+.++|++ |.+++
T Consensus       143 ~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       143 TFDVSFISL-----ISILPELDLLLNP-NDLTL  169 (228)
T ss_pred             eeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence            688888743     3467888889999 66553

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.57  E-value=1.1e-06  Score=64.65  Aligned_cols=106  Identities=18%  Similarity=0.220  Sum_probs=82.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+||++|-|.|.....+-++-|  .+-+-+|.+|..++..++.--  ...+|+.+..|..++.++.+.     ++.|
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~gw--~ek~nViil~g~WeDvl~~L~-----d~~F  170 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWGW--REKENVIILEGRWEDVLNTLP-----DKHF  170 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhccc--ccccceEEEecchHhhhcccc-----ccCc
Confidence            6788999999999998888777633  455667999988765554322  223688999999999988885     5679


Q ss_pred             eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |-|+-|..   .++...+.+.+.++|||+|++-+=|-+
T Consensus       171 DGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~  208 (271)
T KOG1709|consen  171 DGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGL  208 (271)
T ss_pred             ceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence            99999976   455667888889999999999764443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.57  E-value=7.7e-07  Score=77.49  Aligned_cols=96  Identities=18%  Similarity=0.159  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhC---CC-------------------------------------
Q 029836            5 PDEAQFFSMLLKL-INAKNTMEIGVFTGYSLLATALAI---PD-------------------------------------   43 (187)
Q Consensus         5 ~~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~---~~-------------------------------------   43 (187)
                      +....-+-.++.. .+...++|-+||+|.+.++.+...   ++                                     
T Consensus       175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~  254 (702)
T PRK11783        175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE  254 (702)
T ss_pred             HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence            3334444444444 346799999999999999876521   11                                     


Q ss_pred             -CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC
Q 029836           44 -DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        44 -~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                       ..+++|+|+++.+++.|++|+..+|+.+++++.++|+.+......     .+++|+|+.+++
T Consensus       255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~-----~~~~d~IvtNPP  312 (702)
T PRK11783        255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP-----KGPTGLVISNPP  312 (702)
T ss_pred             cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc-----cCCCCEEEECCC
Confidence             136999999999999999999999998889999999976532210     257999999987

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.55  E-value=1.3e-06  Score=64.52  Aligned_cols=104  Identities=16%  Similarity=0.232  Sum_probs=80.2

Q ss_pred             HHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh
Q 029836           11 FSMLLKLI-NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ   89 (187)
Q Consensus        11 l~~l~~~~-~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~   89 (187)
                      |..++... +..++.||||-.++..+++.+..+ ...+++.|+++..++.|.++++++++.++++...+|....+..   
T Consensus         7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~---   82 (226)
T COG2384           7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL---   82 (226)
T ss_pred             HHHHHHHHHcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc---
Confidence            34444333 344599999999999999998865 7899999999999999999999999999999999999655432   


Q ss_pred             cccCCCceeEEEEcCC-CcccHHHHHHHHhcccC
Q 029836           90 DEKYHGTFDFVFVDAD-KDNYVNYHKRLIELVKV  122 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~-~~~~~~~~~~~~~~L~~  122 (187)
                          ++.+|.+++.+. -.-..+++++-.+.|+.
T Consensus        83 ----~d~~d~ivIAGMGG~lI~~ILee~~~~l~~  112 (226)
T COG2384          83 ----EDEIDVIVIAGMGGTLIREILEEGKEKLKG  112 (226)
T ss_pred             ----cCCcCEEEEeCCcHHHHHHHHHHhhhhhcC
Confidence                457999998764 23345556665555543

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.55  E-value=5.2e-07  Score=72.21  Aligned_cols=111  Identities=20%  Similarity=0.237  Sum_probs=88.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++.+|||+.+..|.=|.++|.-+...+.|++.|.+...+...++|+...|. .+..+...|..++-....     .+
T Consensus       238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~-----~~  311 (460)
T KOG1122|consen  238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEF-----PG  311 (460)
T ss_pred             CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCccccccccc-----Cc
Confidence            345678999999999999999998887679999999999999999999999998 566777777765532221     45


Q ss_pred             ceeEEEEcCCCcc-------------------------cHHHHHHHHhcccCCeEEEEeCcC
Q 029836           96 TFDFVFVDADKDN-------------------------YVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        96 ~~D~v~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +||-|++|++...                         ..+.+..+..++++||+||.+.+.
T Consensus       312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS  373 (460)
T KOG1122|consen  312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS  373 (460)
T ss_pred             ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence            8999999976211                         145677778999999999976553

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.52  E-value=3.9e-07  Score=66.32  Aligned_cols=99  Identities=17%  Similarity=0.230  Sum_probs=62.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhccc-CCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEK-YHG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~-~~~   95 (187)
                      ++.++||+||+.|.++..+++...+..+|+++|+.+..           .. +.+.++++|..+.  ...+..... ..+
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~   90 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PL-QNVSFIQGDITNPENIKDIRKLLPESGE   90 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cc-cceeeeecccchhhHHHhhhhhcccccc
Confidence            34799999999999999999886445899999998761           11 4566666665431  112111100 025


Q ss_pred             ceeEEEEcCC--------Ccc------cHHHHHHHHhcccCCeEEEEe
Q 029836           96 TFDFVFVDAD--------KDN------YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        96 ~~D~v~~d~~--------~~~------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++|+|++|..        .+.      ....+..+...|++||.+|+.
T Consensus        91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K  138 (181)
T PF01728_consen   91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK  138 (181)
T ss_dssp             SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence            8999999983        111      133445556789999988764

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.52  E-value=6.4e-07  Score=72.28  Aligned_cols=106  Identities=20%  Similarity=0.194  Sum_probs=81.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC-ceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH-KIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ++.++||.=+|+|.=++.++..++...+|++-|+++++.+..++|++.+++.. ++++.+.|+...+...      ...|
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~------~~~f  122 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR------QERF  122 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS------TT-E
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc------cccC
Confidence            34589999999999888888876645799999999999999999999999987 7999999998776422      5789


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |+|=+|+. .....|++.+.+.++.||+|.+..+
T Consensus       123 D~IDlDPf-GSp~pfldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  123 DVIDLDPF-GSPAPFLDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             EEEEE--S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred             CEEEeCCC-CCccHhHHHHHHHhhcCCEEEEecc
Confidence            99999974 4456899999999999999998655

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=4.9e-06  Score=61.23  Aligned_cols=101  Identities=21%  Similarity=0.197  Sum_probs=72.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGT   96 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~   96 (187)
                      +...|+|+|+..|.|+..+++.++++.+|+++|+.|-.            .-+++.++++|+.+  .+..+.... ....
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l-~~~~  111 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEAL-GGAP  111 (205)
T ss_pred             CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHc-CCCC
Confidence            56899999999999999999988767889999998742            11568999998754  333332221 1335


Q ss_pred             eeEEEEcCCC--------ccc------HHHHHHHHhcccCCeEEEEeCcC
Q 029836           97 FDFVFVDADK--------DNY------VNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        97 ~D~v~~d~~~--------~~~------~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|+|+.|..+        .++      ...++.+...|++||.+++....
T Consensus       112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq  161 (205)
T COG0293         112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ  161 (205)
T ss_pred             cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence            7999999763        111      23455666899999999986543

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.51  E-value=2.3e-06  Score=63.40  Aligned_cols=104  Identities=15%  Similarity=0.123  Sum_probs=75.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+||-+|+++|.....++...++++.|.+||.++...+..-...++.   +|+--+.+|+..... ...   .-+..
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~-Y~~---lv~~V  144 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEK-YRM---LVEMV  144 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGG-GTT---TS--E
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHH-hhc---ccccc
Confidence            34679999999999999999998877899999999998776655544443   688888888864321 110   14689


Q ss_pred             eEEEEcCCC-cccHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDADK-DNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~~-~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+||.|-.. .+..-+...+...||+||.+++
T Consensus       145 DvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i  176 (229)
T PF01269_consen  145 DVIFQDVAQPDQARIAALNARHFLKPGGHLII  176 (229)
T ss_dssp             EEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cEEEecCCChHHHHHHHHHHHhhccCCcEEEE
Confidence            999999774 4455667788889999998876

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.49  E-value=9.6e-07  Score=69.71  Aligned_cols=121  Identities=17%  Similarity=0.197  Sum_probs=81.3

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC------CCCCEEEEEeCCchHHHHHHHHHHHcCCCC-ceEE
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAI------PDDGKILALDITKEHYEKGLPIIQKAGVAH-KIDF   75 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~------~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-~i~~   75 (187)
                      ++....+++..++...+..+|+|-.||+|.....+.+.+      ....+++|+|+++..+..++-++.-.+... +..+
T Consensus        30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i  109 (311)
T PF02384_consen   30 TPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI  109 (311)
T ss_dssp             --HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred             hHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence            456677888888877777799999999999988877643      125789999999999999998887665533 3468


Q ss_pred             EeCCchHHHHHHhhcccCCCceeEEEEcCCC--c----------------------ccHHHHHHHHhcccCCeEEEE
Q 029836           76 REGPALPLLDQLIQDEKYHGTFDFVFVDADK--D----------------------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        76 ~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~----------------------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..+|+.......     ....||+|+..++.  .                      ....|+..+...|++||.+++
T Consensus       110 ~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~  181 (311)
T PF02384_consen  110 IQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI  181 (311)
T ss_dssp             EES-TTTSHSCT-----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cccccccccccc-----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence            888875432211     03689999998761  1                      002477888999999997643

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.48  E-value=2e-06  Score=59.54  Aligned_cols=84  Identities=21%  Similarity=0.351  Sum_probs=59.2

Q ss_pred             EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC------------CcccHHHH
Q 029836           46 KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD------------KDNYVNYH  113 (187)
Q Consensus        46 ~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~------------~~~~~~~~  113 (187)
                      +|+++|+.+++++.+++.+++.++.+++++++.+=.....-+.     .+++|+++.+-.            .+.....+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al   75 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-----EGPVDAAIFNLGYLPGGDKSITTKPETTLKAL   75 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence            6899999999999999999999998899999866544433231     237999987622            23346788


Q ss_pred             HHHHhcccCCeEEEEeCcCCCcc
Q 029836          114 KRLIELVKVGGVIGYDNTLWGGS  136 (187)
Q Consensus       114 ~~~~~~L~~gG~lv~~~~~~~~~  136 (187)
                      +.+.++|++||++++.  .+.|+
T Consensus        76 ~~al~lL~~gG~i~iv--~Y~GH   96 (140)
T PF06962_consen   76 EAALELLKPGGIITIV--VYPGH   96 (140)
T ss_dssp             HHHHHHEEEEEEEEEE--E--ST
T ss_pred             HHHHHhhccCCEEEEE--EeCCC
Confidence            9999999999999873  44443

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.46  E-value=1.3e-06  Score=67.78  Aligned_cols=107  Identities=17%  Similarity=0.156  Sum_probs=76.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC-----ceEEEeCCchH-HHHHHhhcc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH-----KIDFREGPALP-LLDQLIQDE   91 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-----~i~~~~~d~~~-~l~~~~~~~   91 (187)
                      .+...++++|||-|+-.+-+-++-  -+.++|+|+.+-.+..|+++.+......     .+.|+.+|... .+..+... 
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~-  192 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF-  192 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC-
Confidence            356789999999999777666542  3789999999999999998888654322     36788888754 34433322 


Q ss_pred             cCCCceeEEEEcCC-------CcccHHHHHHHHhcccCCeEEEE
Q 029836           92 KYHGTFDFVFVDAD-------KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        92 ~~~~~~D~v~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                       .+.+||+|-+.-.       .+....++..+...|+|||++|-
T Consensus       193 -~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg  235 (389)
T KOG1975|consen  193 -KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG  235 (389)
T ss_pred             -CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence             1344999954321       34456788899999999999993

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.44  E-value=1.1e-06  Score=64.51  Aligned_cols=120  Identities=14%  Similarity=0.155  Sum_probs=73.3

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-HH
Q 029836            7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LD   85 (187)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~   85 (187)
                      ...+++.|....+...|.|+|||.+.++..    ++....|.+.|.-..                +-.+..+|.... ++
T Consensus        60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~----~~~~~~V~SfDLva~----------------n~~Vtacdia~vPL~  119 (219)
T PF05148_consen   60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKA----VPNKHKVHSFDLVAP----------------NPRVTACDIANVPLE  119 (219)
T ss_dssp             HHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S----------------STTEEES-TTS-S--
T ss_pred             HHHHHHHHHhcCCCEEEEECCCchHHHHHh----cccCceEEEeeccCC----------------CCCEEEecCccCcCC
Confidence            455677776665667999999999887643    443457999998642                223556777442 32


Q ss_pred             HHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHHH
Q 029836           86 QLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKAL  163 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (187)
                              +++.|+++....  -.++..++.++.+.||+||.|.+.++..+=                  ..+..|.+.+
T Consensus       120 --------~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf------------------~~~~~F~~~~  173 (219)
T PF05148_consen  120 --------DESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRF------------------ENVKQFIKAL  173 (219)
T ss_dssp             --------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-------------------S-HHHHHHHH
T ss_pred             --------CCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccC------------------cCHHHHHHHH
Confidence                    679999998765  678999999999999999999998765320                  1457777776


Q ss_pred             hcCCCeeEEE
Q 029836          164 AVDPRIEICQ  173 (187)
Q Consensus       164 ~~~~~~~~~~  173 (187)
                      ..- +|....
T Consensus       174 ~~~-GF~~~~  182 (219)
T PF05148_consen  174 KKL-GFKLKS  182 (219)
T ss_dssp             HCT-TEEEEE
T ss_pred             HHC-CCeEEe
Confidence            643 554443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.43  E-value=7.9e-07  Score=64.03  Aligned_cols=99  Identities=13%  Similarity=0.134  Sum_probs=77.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ....+.|+|+|+|..+...+++   ..+|+++|.+|...+.|.+|+.-.|. .+++++.+|+.+.-         .+..|
T Consensus        32 a~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~---------fe~AD   98 (252)
T COG4076          32 AEDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYD---------FENAD   98 (252)
T ss_pred             hhhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEeccccccc---------ccccc
Confidence            3478999999999998877765   46999999999999999999977776 79999999998652         23468


Q ss_pred             EEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           99 FVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        99 ~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|++-.-     .+.....+..+...||..+.++-..
T Consensus        99 vvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~  135 (252)
T COG4076          99 VVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQE  135 (252)
T ss_pred             eeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHH
Confidence            8875432     3445567777778888888886433

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.43  E-value=3e-06  Score=59.23  Aligned_cols=74  Identities=20%  Similarity=0.293  Sum_probs=55.9

Q ss_pred             HHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHHcC--CCCceEEEeC
Q 029836            8 AQFFSMLLKL----INAKNTMEIGVFTGYSLLATALAI---PDDGKILALDITKEHYEKGLPIIQKAG--VAHKIDFREG   78 (187)
Q Consensus         8 ~~~l~~l~~~----~~~~~vLeiG~g~G~~~~~l~~~~---~~~~~v~~vd~~~~~~~~a~~~~~~~~--~~~~i~~~~~   78 (187)
                      .+++..++..    .++.+|+|+|||.|+.+..++..+   ..+.+|++||.++...+.+.+..+..+  ...+.++..+
T Consensus        10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   89 (141)
T PF13679_consen   10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG   89 (141)
T ss_pred             HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence            3444555444    667899999999999999999822   136899999999999999999888876  3345666665


Q ss_pred             Cch
Q 029836           79 PAL   81 (187)
Q Consensus        79 d~~   81 (187)
                      +..
T Consensus        90 ~~~   92 (141)
T PF13679_consen   90 DIA   92 (141)
T ss_pred             chh
Confidence            543

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.41  E-value=3.7e-06  Score=67.20  Aligned_cols=117  Identities=19%  Similarity=0.205  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC---CC----------------------------C-------EE
Q 029836            6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIP---DD----------------------------G-------KI   47 (187)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~---~~----------------------------~-------~v   47 (187)
                      ....-|-.++...+...++|-=||+|.+.++.|...+   |+                            +       .+
T Consensus       178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~  257 (381)
T COG0116         178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII  257 (381)
T ss_pred             HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence            3344444555555667899999999999999775432   10                            1       37


Q ss_pred             EEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC------c-----ccHHHHHHH
Q 029836           48 LALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK------D-----NYVNYHKRL  116 (187)
Q Consensus        48 ~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~------~-----~~~~~~~~~  116 (187)
                      +|+|+++.+++.|+.|.+..|+.+.|+|.++|+..+-+.       .+.+|+|+.+++.      +     -|..+.+.+
T Consensus       258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~l  330 (381)
T COG0116         258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP-------LEEYGVVISNPPYGERLGSEALVAKLYREFGRTL  330 (381)
T ss_pred             EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHH
Confidence            899999999999999999999999999999999655331       1589999999871      1     244555566


Q ss_pred             HhcccCCeEEEEe
Q 029836          117 IELVKVGGVIGYD  129 (187)
Q Consensus       117 ~~~L~~gG~lv~~  129 (187)
                      .+.++.-+..|+.
T Consensus       331 k~~~~~ws~~v~t  343 (381)
T COG0116         331 KRLLAGWSRYVFT  343 (381)
T ss_pred             HHHhcCCceEEEE
Confidence            6777777777763

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.39  E-value=3.1e-06  Score=71.52  Aligned_cols=100  Identities=18%  Similarity=0.162  Sum_probs=66.6

Q ss_pred             CCHHHHHHHHHHHhhc-------CCCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCchHHHHHHHHHHHcC
Q 029836            3 TSPDEAQFFSMLLKLI-------NAKNTMEIGVFTGYSLLATALAIPD-------DGKILALDITKEHYEKGLPIIQKAG   68 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~-------~~~~vLeiG~g~G~~~~~l~~~~~~-------~~~v~~vd~~~~~~~~a~~~~~~~~   68 (187)
                      +++...++|-.++...       ...+|||.+||+|.....++..++.       ...++++|+++..+..++.++...+
T Consensus         8 TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~   87 (524)
T TIGR02987         8 TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA   87 (524)
T ss_pred             CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence            3455555555544221       3469999999999999998876531       2578999999999999999998775


Q ss_pred             CCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC
Q 029836           69 VAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        69 ~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      . ..+.+...|...........  ..+.||+|+..++
T Consensus        88 ~-~~~~i~~~d~l~~~~~~~~~--~~~~fD~IIgNPP  121 (524)
T TIGR02987        88 L-LEINVINFNSLSYVLLNIES--YLDLFDIVITNPP  121 (524)
T ss_pred             C-CCceeeeccccccccccccc--ccCcccEEEeCCC
Confidence            2 23555555544321101000  1358999999876

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.38  E-value=1.7e-06  Score=60.29  Aligned_cols=57  Identities=14%  Similarity=0.204  Sum_probs=48.9

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836           22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      .++||||+.|.++.+++...+ ..+++++|+++..++.++++++.++. +++++++...
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~-~~v~~~~~al   57 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNL-PNVVLLNAAV   57 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEEeee
Confidence            489999999999999998765 57999999999999999999998877 4577776543

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=98.38  E-value=3.2e-06  Score=61.59  Aligned_cols=104  Identities=20%  Similarity=0.233  Sum_probs=77.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC------CCceEEEeCCchHHHHHHhhcccC
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV------AHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~------~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      .-.+.|||||.|.....++..+| +..+.++|+.....+..++.+....-      -.++-+...++..+++.+...   
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k---  136 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK---  136 (249)
T ss_pred             cceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh---
Confidence            35689999999999999999988 78899999999999998888887652      257888889999888887543   


Q ss_pred             CCcee--EEEE-cCC-C-------cccHHHHHHHHhcccCCeEEEE
Q 029836           94 HGTFD--FVFV-DAD-K-------DNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        94 ~~~~D--~v~~-d~~-~-------~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                       ++..  +.+. |+. +       --....+.+..-+|++||.+..
T Consensus       137 -gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt  181 (249)
T KOG3115|consen  137 -GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT  181 (249)
T ss_pred             -cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence             3333  2222 221 0       1124567777789999998864

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.35  E-value=1.2e-05  Score=63.57  Aligned_cols=108  Identities=10%  Similarity=0.043  Sum_probs=77.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHHcCCCCceEE--EeCCchHHHHHHhhcccC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPD---DGKILALDITKEHYEKGLPIIQKAGVAHKIDF--REGPALPLLDQLIQDEKY   93 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~---~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~~l~~~~~~~~~   93 (187)
                      ++..++|+|||+|.=+..+++++.+   ..+++++|+|.+.++.+.+.+..... +.+++  +.+|..+.+..+.... .
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~-~  153 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPE-N  153 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhccccc-c
Confidence            3458999999999988888877742   36799999999999999999983333 44555  8888877654332100 0


Q ss_pred             CCceeEEEEcCC------CcccHHHHHHHHh-cccCCeEEEE
Q 029836           94 HGTFDFVFVDAD------KDNYVNYHKRLIE-LVKVGGVIGY  128 (187)
Q Consensus        94 ~~~~D~v~~d~~------~~~~~~~~~~~~~-~L~~gG~lv~  128 (187)
                      .....+++.-+.      +.....++..+++ .|+||+.+++
T Consensus       154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI  195 (319)
T ss_pred             cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence            123466665443      4556788899988 9999998876

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.32  E-value=2.6e-06  Score=65.50  Aligned_cols=103  Identities=23%  Similarity=0.263  Sum_probs=69.9

Q ss_pred             CCCEEEEEcccccHHH----HHHHhhCCC----CCEEEEEeCCchHHHHHHHHHHH-----cCCC---------------
Q 029836           19 NAKNTMEIGVFTGYSL----LATALAIPD----DGKILALDITKEHYEKGLPIIQK-----AGVA---------------   70 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~----~~l~~~~~~----~~~v~~vd~~~~~~~~a~~~~~~-----~~~~---------------   70 (187)
                      ++-+|+-.||++|--.    ..+.+.++.    ..+|+|+|+|...++.|+...=.     .+++               
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            3679999999999633    334455442    47899999999999988753322     1221               


Q ss_pred             --------CceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836           71 --------HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        71 --------~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                              ..|+|.+.|..+..+ .      .+.||+||+...     .+.....++.....|+|||+|++
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~-~------~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl  239 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSP-F------LGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL  239 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCcc-c------cCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence                    123444444433221 1      567999998764     45567788999999999999997

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.30  E-value=9.1e-06  Score=63.60  Aligned_cols=82  Identities=10%  Similarity=0.033  Sum_probs=67.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++..++|..+|.|.-+..+++.++ .++|+++|.++.+++.+++.++..  ..++++++++..++...+...+  ..++
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~--~~~v   93 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELL--VTKI   93 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcC--CCcc
Confidence            3456899999999999999999887 499999999999999999998765  3689999999987655443221  3579


Q ss_pred             eEEEEcC
Q 029836           98 DFVFVDA  104 (187)
Q Consensus        98 D~v~~d~  104 (187)
                      |.|++|.
T Consensus        94 DgIl~DL  100 (305)
T TIGR00006        94 DGILVDL  100 (305)
T ss_pred             cEEEEec
Confidence            9999984

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.29  E-value=1.2e-06  Score=68.24  Aligned_cols=104  Identities=24%  Similarity=0.273  Sum_probs=70.7

Q ss_pred             CCCEEEEEcccccHHHHHHH----hhCC---CCCEEEEEeCCchHHHHHHHHHH------------------Hc-----C
Q 029836           19 NAKNTMEIGVFTGYSLLATA----LAIP---DDGKILALDITKEHYEKGLPIIQ------------------KA-----G   68 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~----~~~~---~~~~v~~vd~~~~~~~~a~~~~~------------------~~-----~   68 (187)
                      ++-+|+-.||.+|--...+|    +..+   ...+|+|+|+++.+++.|++..-                  ..     +
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            34699999999997444433    3222   13589999999999999987521                  10     0


Q ss_pred             -------CCCceEEEeCCchHH-HHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe
Q 029836           69 -------VAHKIDFREGPALPL-LDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        69 -------~~~~i~~~~~d~~~~-l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                             +...++|.+.|..+. .+.       .+.||+|++...     .+.....++.+.+.|+|||+|++-
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~-------~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAV-------PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCcc-------CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                   113456666666542 110       368999998543     345678899999999999999863

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.29  E-value=2.4e-06  Score=65.94  Aligned_cols=115  Identities=16%  Similarity=0.085  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      +...+-+-..+...+...|||||+|.|.+|..+++..   .+++++|+++.+.+..++.+.   ..++++++++|+.++-
T Consensus        16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~   89 (262)
T PF00398_consen   16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWD   89 (262)
T ss_dssp             HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccc
Confidence            3444444445555578899999999999999999874   799999999999988887665   2378999999998752


Q ss_pred             HHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhccc---CCeEEEEe
Q 029836           85 DQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVK---VGGVIGYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~---~gG~lv~~  129 (187)
                      ....    .......|+...+..-...++..+...-+   ...++++.
T Consensus        90 ~~~~----~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq  133 (262)
T PF00398_consen   90 LYDL----LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQ  133 (262)
T ss_dssp             GGGH----CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEE
T ss_pred             cHHh----hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEe
Confidence            2110    01244566665554333455555554222   33455543

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.23  E-value=1.6e-06  Score=63.82  Aligned_cols=104  Identities=26%  Similarity=0.287  Sum_probs=63.4

Q ss_pred             CCCEEEEEcccccHHHHHHH---hh-C----CCCCEEEEEeCCchHHHHHHHHHH--------------Hc-----C---
Q 029836           19 NAKNTMEIGVFTGYSLLATA---LA-I----PDDGKILALDITKEHYEKGLPIIQ--------------KA-----G---   68 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~---~~-~----~~~~~v~~vd~~~~~~~~a~~~~~--------------~~-----~---   68 (187)
                      ++-+|+-.||++|--...+|   .. .    +...+++|+|+++.+++.|++..=              +.     +   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            45699999999997444333   22 1    113589999999999988875321              00     0   


Q ss_pred             -----CCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe
Q 029836           69 -----VAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        69 -----~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                           +..+++|.+.|..+..+.       .+.||+||+...     .+.....++.+...|+|||+|++-
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~-------~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPP-------FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCcc-------cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                 013577877777662121       568999999865     344577889999999999999974

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.22  E-value=2.5e-05  Score=61.93  Aligned_cols=104  Identities=19%  Similarity=0.177  Sum_probs=86.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      +.+|+|-=+|+|.=++.++...+ ..+++.-|++|.+.+.+++|++.+.. .+...++.|+..++.+.      ...||+
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~------~~~fd~  124 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHEL------HRAFDV  124 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhc------CCCccE
Confidence            88999999999998888888776 34899999999999999999998843 45666679998777764      578999


Q ss_pred             EEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836          100 VFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus       100 v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |=+|+. .....|++.+.+.++.||+|.+.-+.
T Consensus       125 IDiDPF-GSPaPFlDaA~~s~~~~G~l~vTATD  156 (380)
T COG1867         125 IDIDPF-GSPAPFLDAALRSVRRGGLLCVTATD  156 (380)
T ss_pred             EecCCC-CCCchHHHHHHHHhhcCCEEEEEecc
Confidence            999874 34567888999999999999986543

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.21  E-value=1.4e-05  Score=62.05  Aligned_cols=111  Identities=14%  Similarity=0.140  Sum_probs=68.2

Q ss_pred             HHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            8 AQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         8 ~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      .++|..+..   ..+|.+|||+|+|.|..+..+.+.++.-.+++++|.++.+++.++..++.......... ..   ...
T Consensus        19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~---~~~   94 (274)
T PF09243_consen   19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RR---VLY   94 (274)
T ss_pred             HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hh---hhh
Confidence            344555543   35789999999999986666666666447899999999999999887765422111111 11   111


Q ss_pred             HHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836           85 DQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ....    .....|+|++...     ......+++.+++.+.+  +||+
T Consensus        95 ~~~~----~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVl  137 (274)
T PF09243_consen   95 RDFL----PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVL  137 (274)
T ss_pred             cccc----cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEE
Confidence            1110    0234499987643     23445677777777766  5553

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.21  E-value=6.2e-06  Score=64.24  Aligned_cols=93  Identities=18%  Similarity=0.291  Sum_probs=54.1

Q ss_pred             HHHHHHHhhcC-----CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc-CCCCceEEEeCCch-
Q 029836            9 QFFSMLLKLIN-----AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA-GVAHKIDFREGPAL-   81 (187)
Q Consensus         9 ~~l~~l~~~~~-----~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~-   81 (187)
                      .++..|+....     ..++||||||.-.+=--|..... +-+++|+|+++..++.|+++++.+ ++.++|+++..... 
T Consensus        87 ~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~  165 (299)
T PF05971_consen   87 HWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPD  165 (299)
T ss_dssp             HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-
T ss_pred             HHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcc
Confidence            34445554433     24799999976654222333322 689999999999999999999999 89999999765433 


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      ..+..+...   .+.||+..+.++
T Consensus       166 ~i~~~i~~~---~e~~dftmCNPP  186 (299)
T PF05971_consen  166 NIFDGIIQP---NERFDFTMCNPP  186 (299)
T ss_dssp             SSTTTSTT-----S-EEEEEE---
T ss_pred             ccchhhhcc---cceeeEEecCCc
Confidence            233333222   468999999876

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.19  E-value=8.2e-05  Score=55.98  Aligned_cols=97  Identities=21%  Similarity=0.227  Sum_probs=62.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      .+++||-+|=..-.|....+...  ..+|+.+|+++..++..++..++.|++  ++.++.|..+.+|.-.     .++||
T Consensus        44 ~gk~il~lGDDDLtSlA~al~~~--~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~-----~~~fD  114 (243)
T PF01861_consen   44 EGKRILFLGDDDLTSLALALTGL--PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL-----RGKFD  114 (243)
T ss_dssp             TT-EEEEES-TT-HHHHHHHHT----SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT-----SS-BS
T ss_pred             cCCEEEEEcCCcHHHHHHHhhCC--CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH-----hcCCC
Confidence            57899999955554444333333  479999999999999999999999983  9999999998887643     58999


Q ss_pred             EEEEcCC--CcccHHHHHHHHhcccCCe
Q 029836           99 FVFVDAD--KDNYVNYHKRLIELVKVGG  124 (187)
Q Consensus        99 ~v~~d~~--~~~~~~~~~~~~~~L~~gG  124 (187)
                      ++|.|++  .+...-|+.+....||.-|
T Consensus       115 ~f~TDPPyT~~G~~LFlsRgi~~Lk~~g  142 (243)
T PF01861_consen  115 VFFTDPPYTPEGLKLFLSRGIEALKGEG  142 (243)
T ss_dssp             EEEE---SSHHHHHHHHHHHHHTB-STT
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence            9999997  4567778888888888666

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.13  E-value=1.5e-05  Score=62.79  Aligned_cols=97  Identities=14%  Similarity=0.148  Sum_probs=75.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      -...+|+|.|.|..+..++..+|   ++-+++.+...+..++.++. .|    ++.+-||..+-.|          +-|+
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P----------~~da  239 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP----------KGDA  239 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccCC----------CcCe
Confidence            36889999999999999998765   48889999888887777664 33    7778888775544          3468


Q ss_pred             EEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836          100 VFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus       100 v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      ||+-.-     -++...++++|+..|+|||.|++-+...+
T Consensus       240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p  279 (342)
T KOG3178|consen  240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP  279 (342)
T ss_pred             EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence            876532     56788999999999999998887665433

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.06  E-value=7.5e-05  Score=54.58  Aligned_cols=103  Identities=15%  Similarity=0.151  Sum_probs=77.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+..+||=+|+.+|.....++.-.+ .+.+.+||.+++..+..-...++.   +|+--+.+|+..... ...   --+..
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~-Y~~---~Ve~V  146 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEK-YRH---LVEKV  146 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHH-hhh---hcccc
Confidence            4568999999999999999999877 799999999998876655555443   678778888864322 110   04679


Q ss_pred             eEEEEcCCCcc-cHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDADKDN-YVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~~~~-~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+|+.|-.+.+ ..-+...+...||+||++++
T Consensus       147 Dviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i  178 (231)
T COG1889         147 DVIYQDVAQPNQAEILADNAEFFLKKGGYVVI  178 (231)
T ss_pred             cEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence            99999987444 44566777889999996654

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.04  E-value=4.3e-05  Score=60.44  Aligned_cols=87  Identities=8%  Similarity=0.089  Sum_probs=62.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+.+++||+||++|.++-.+++.   +.+|++||..+-.     ..+..   .++++...+|...+.+.       .+.+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~~---~~~V~h~~~d~fr~~p~-------~~~v  271 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLMD---TGQVEHLRADGFKFRPP-------RKNV  271 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----HhhhC---CCCEEEEeccCcccCCC-------CCCC
Confidence            46779999999999999999976   5699999966522     12222   26899999998776552       3579


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCC
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVG  123 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~g  123 (187)
                      |++++|.. .......+.+.+.|..|
T Consensus       272 DwvVcDmv-e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        272 DWLVCDMV-EKPARVAELMAQWLVNG  296 (357)
T ss_pred             CEEEEecc-cCHHHHHHHHHHHHhcC
Confidence            99999985 22334455555666555

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.02  E-value=7.8e-05  Score=57.75  Aligned_cols=82  Identities=15%  Similarity=0.156  Sum_probs=69.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      +...++|..-|.|+-+..+++.+++.++++++|.++.+++.|++.+..++  +++++++++..++...+...+  .+++|
T Consensus        23 ~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~--i~~vD   98 (314)
T COG0275          23 PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELG--IGKVD   98 (314)
T ss_pred             CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcC--CCcee
Confidence            44689999999999999999999877899999999999999999998866  699999999877655554332  46899


Q ss_pred             EEEEcC
Q 029836           99 FVFVDA  104 (187)
Q Consensus        99 ~v~~d~  104 (187)
                      -|++|.
T Consensus        99 GiL~DL  104 (314)
T COG0275          99 GILLDL  104 (314)
T ss_pred             EEEEec
Confidence            999884

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.02  E-value=2.3e-05  Score=59.29  Aligned_cols=98  Identities=9%  Similarity=0.045  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      ...++..+-.......|-|+|||.+-++.    .  ....|+++|+-+                .+-+++.+|+... |-
T Consensus       168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a----------------~~~~V~~cDm~~v-Pl  224 (325)
T KOG3045|consen  168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA----------------VNERVIACDMRNV-PL  224 (325)
T ss_pred             HHHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeec----------------CCCceeeccccCC-cC
Confidence            34566666666666788999999987654    1  136799999854                3556677787653 32


Q ss_pred             HhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           87 LIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      -      +++.|+++....  -.+..+++.++.+.|++||.+.+.++-.
T Consensus       225 ~------d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~S  267 (325)
T KOG3045|consen  225 E------DESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKS  267 (325)
T ss_pred             c------cCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhh
Confidence            1      679999987654  5778999999999999999999887653

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.91  E-value=6.5e-05  Score=58.91  Aligned_cols=84  Identities=17%  Similarity=0.141  Sum_probs=61.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhc-ccCCC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD-EKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~-~~~~~   95 (187)
                      ..++..+||..-|.|+-+..+++.+++ ++++++|.++.+++.+++.+...  .+++.+++++..++...+... .  ..
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~--~~   92 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNG--IN   92 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTT--TS
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccC--CC
Confidence            345669999999999999999999885 99999999999999998877654  479999999987765544332 1  46


Q ss_pred             ceeEEEEcCC
Q 029836           96 TFDFVFVDAD  105 (187)
Q Consensus        96 ~~D~v~~d~~  105 (187)
                      ++|-|++|..
T Consensus        93 ~~dgiL~DLG  102 (310)
T PF01795_consen   93 KVDGILFDLG  102 (310)
T ss_dssp             -EEEEEEE-S
T ss_pred             ccCEEEEccc
Confidence            8999999943

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.88  E-value=3.6e-05  Score=57.63  Aligned_cols=99  Identities=16%  Similarity=0.087  Sum_probs=71.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe-CCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE-GPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+.+.+||||+.+|..|-.+++.-  ..+|+++|.....+..-   ++   ..+++..+. .++....+.-.     .+
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~k---LR---~d~rV~~~E~tN~r~l~~~~~-----~~  143 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWK---LR---NDPRVIVLERTNVRYLTPEDF-----TE  143 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHh---Hh---cCCcEEEEecCChhhCCHHHc-----cc
Confidence            3467899999999999999999863  47999999987554321   22   225665544 44544333322     45


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..|++++|-+-......+..+..++++++.++.
T Consensus       144 ~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         144 KPDLIVIDVSFISLKLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             CCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence            789999998877778888889999999987764

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.85  E-value=2e-05  Score=64.54  Aligned_cols=114  Identities=18%  Similarity=0.165  Sum_probs=92.8

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccC
Q 029836           14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      +....++.+|||.=+++|.-++.++..++.-.++++-|.++..++..++|++.++..+.++..++|+....-....-   
T Consensus       104 ~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~---  180 (525)
T KOG1253|consen  104 LKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMV---  180 (525)
T ss_pred             hhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcccc---
Confidence            34455677999999999999999999988557899999999999999999999988888889999986543322110   


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ...||+|-+|+. .....|++.+.+.++.||+|++.-+
T Consensus       181 ~~~FDvIDLDPy-Gs~s~FLDsAvqav~~gGLL~vT~T  217 (525)
T KOG1253|consen  181 AKFFDVIDLDPY-GSPSPFLDSAVQAVRDGGLLCVTCT  217 (525)
T ss_pred             ccccceEecCCC-CCccHHHHHHHHHhhcCCEEEEEec
Confidence            368999999874 4456789999999999999998644

>PHA01634 hypothetical protein

Probab=97.84  E-value=7.9e-05  Score=50.42  Aligned_cols=75  Identities=12%  Similarity=0.083  Sum_probs=57.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+.++|+|||.+.|.++++++..-  ...|+++|+++...+..+++++.+..-++.....     .++..      -+.|
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~-----eW~~~------Y~~~   93 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG-----EWNGE------YEDV   93 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeecc-----ccccc------CCCc
Confidence            467899999999999999998652  4789999999999999999888764433322221     12221      5789


Q ss_pred             eEEEEcCC
Q 029836           98 DFVFVDAD  105 (187)
Q Consensus        98 D~v~~d~~  105 (187)
                      |+..+|..
T Consensus        94 Di~~iDCe  101 (156)
T PHA01634         94 DIFVMDCE  101 (156)
T ss_pred             ceEEEEcc
Confidence            99999975

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.83  E-value=4.2e-05  Score=57.54  Aligned_cols=86  Identities=19%  Similarity=0.188  Sum_probs=53.8

Q ss_pred             HHHHHhhcCC--CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC--------CCceEEEeCCc
Q 029836           11 FSMLLKLINA--KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV--------AHKIDFREGPA   80 (187)
Q Consensus        11 l~~l~~~~~~--~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~--------~~~i~~~~~d~   80 (187)
                      |...+...+.  .+|||..+|.|.-+.-++..   +++|+++|-+|-.....+..++....        ..+++++++|+
T Consensus        65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~  141 (234)
T PF04445_consen   65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA  141 (234)
T ss_dssp             HHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred             HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence            3333444443  38999999999999988854   57899999999887777655553311        14799999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCC
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      .++++..      ..+||+|++|+.
T Consensus       142 ~~~L~~~------~~s~DVVY~DPM  160 (234)
T PF04445_consen  142 LEYLRQP------DNSFDVVYFDPM  160 (234)
T ss_dssp             CCHCCCH------SS--SEEEE--S
T ss_pred             HHHHhhc------CCCCCEEEECCC
Confidence            9988722      679999999986

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.83  E-value=5.8e-05  Score=54.88  Aligned_cols=96  Identities=17%  Similarity=0.152  Sum_probs=69.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..+.++|||.|+|+|..++..++..  ...|++.|++|.....++-|.+.++.  .+.+...|..-  .        +..
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--~--------~~~  142 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--S--------PPA  142 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--C--------Ccc
Confidence            3467899999999999888777653  47899999999998888989988885  67777776642  1        578


Q ss_pred             eeEEEEcCC---CcccHHHHHHHHhcccCCeEEE
Q 029836           97 FDFVFVDAD---KDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        97 ~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      +|+++...-   +......+. +...++..|.-+
T Consensus       143 ~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~v  175 (218)
T COG3897         143 FDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAV  175 (218)
T ss_pred             eeEEEeeceecCchHHHHHHH-HHHHHHhCCCEE
Confidence            999987543   444444444 444555555443

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.77  E-value=0.00033  Score=53.73  Aligned_cols=120  Identities=10%  Similarity=0.124  Sum_probs=69.5

Q ss_pred             HHHHhhcCCCEEEEEcccccH--HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh-
Q 029836           12 SMLLKLINAKNTMEIGVFTGY--SLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI-   88 (187)
Q Consensus        12 ~~l~~~~~~~~vLeiG~g~G~--~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~-   88 (187)
                      +.|+....-...||||||.-.  .+.++++...++++|+-||.+|-.+..++..+..... .+..++++|..+.-.-+. 
T Consensus        61 r~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~  139 (267)
T PF04672_consen   61 RYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAH  139 (267)
T ss_dssp             HHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCS
T ss_pred             HHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcC
Confidence            334433456799999999543  6777877766689999999999999999988876532 248999999876422211 


Q ss_pred             ----hcccCCCceeEEEEcC-----CCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           89 ----QDEKYHGTFDFVFVDA-----DKDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        89 ----~~~~~~~~~D~v~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                          .-..-+.+.=++++..     +.++....+..+...|.+|++|+++...
T Consensus       140 p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t  192 (267)
T PF04672_consen  140 PEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT  192 (267)
T ss_dssp             HHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred             HHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence                0000023333444332     1356788999999999999999987654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.72  E-value=0.00011  Score=60.67  Aligned_cols=97  Identities=13%  Similarity=0.108  Sum_probs=53.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH-HcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ-KAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~-~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      ..+||||||.|.++.++++.   +-..+++-+...  ..++..+. +.|++.-+-+. ++  .-+|-.      ++.||+
T Consensus       119 R~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~--~~~qvqfaleRGvpa~~~~~-~s--~rLPfp------~~~fDm  184 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLER---NVTTMSFAPNDE--HEAQVQFALERGVPAMIGVL-GS--QRLPFP------SNAFDM  184 (506)
T ss_pred             EEEEeccceeehhHHHHhhC---CceEEEcccccC--CchhhhhhhhcCcchhhhhh-cc--ccccCC------ccchhh
Confidence            57899999999999999865   333334333222  12222222 23443221111 11  111211      578999


Q ss_pred             EEEcCC----CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836          100 VFVDAD----KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus       100 v~~d~~----~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |.+...    ...---++-++-++|+|||+++.+..
T Consensus       185 vHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p  220 (506)
T PF03141_consen  185 VHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP  220 (506)
T ss_pred             hhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence            976532    22222355567799999999997543

; GO: 0008168 methyltransferase activity

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.71  E-value=0.00045  Score=60.18  Aligned_cols=102  Identities=25%  Similarity=0.245  Sum_probs=69.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCchHHHH--------------HHHHHHH-----cCC
Q 029836           20 AKNTMEIGVFTGYSLLATALAI-------PD----DGKILALDITKEHYEK--------------GLPIIQK-----AGV   69 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~-------~~----~~~v~~vd~~~~~~~~--------------a~~~~~~-----~~~   69 (187)
                      .-+|+|+|-|+|...+...+..       ++    ..+++++|..|-..+.              +++....     .|+
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            3589999999999777766444       21    2478999986532222              2222211     121


Q ss_pred             ------CC--ceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-C----c-ccHHHHHHHHhcccCCeEEE
Q 029836           70 ------AH--KIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-K----D-NYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        70 ------~~--~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-~----~-~~~~~~~~~~~~L~~gG~lv  127 (187)
                            ..  ++++..||+.+.++.+      ...+|.+|.|+. +    + -..++|..+.+++++||.++
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~  203 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA  203 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence                  11  3567889999988877      457999999975 1    1 13679999999999999997

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.70  E-value=0.0001  Score=60.47  Aligned_cols=112  Identities=14%  Similarity=0.110  Sum_probs=84.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      ...+|-+|-|.|....++...+| ..++++||++|++++.|++++.-..- .+.+++..|..+++.+......+...||+
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv  373 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV  373 (482)
T ss_pred             cCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence            45788888888999999888877 68999999999999999999864332 35677778888888877654323568999


Q ss_pred             EEEcCCC-c------c-----cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836          100 VFVDADK-D------N-----YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus       100 v~~d~~~-~------~-----~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +++|-+- .      .     ...++..+...|.|.|+++++-+-.
T Consensus       374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r  419 (482)
T KOG2352|consen  374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR  419 (482)
T ss_pred             EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence            9998541 1      1     1345556667999999998875543

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.68  E-value=0.00078  Score=46.40  Aligned_cols=104  Identities=19%  Similarity=0.146  Sum_probs=66.6

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-HHHHhhcccCC-CceeEE
Q 029836           23 TMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LDQLIQDEKYH-GTFDFV  100 (187)
Q Consensus        23 vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~-~~~D~v  100 (187)
                      ++|+|||.|..+ .+....+....++++|+++.++..++..... .....+.+..++.... ++-.      . ..||++
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~d~~  123 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFE------DSASFDLV  123 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCC------CCCceeEE
Confidence            999999999977 4343322124889999999988875544432 1111157777776542 2211      2 378999


Q ss_pred             EEcCCC--cccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836          101 FVDADK--DNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus       101 ~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      ......  ......+..+.+.++++|.+++......
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         124 ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            333221  1146788889999999999988766543

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.67  E-value=0.00021  Score=54.10  Aligned_cols=84  Identities=17%  Similarity=0.123  Sum_probs=56.9

Q ss_pred             HHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836            9 QFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus         9 ~~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      .++..+... ..+.+|+|||||.--.+..+.... ++..+++.|++...++.....+...+..  .++...|...-.+  
T Consensus        94 ~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~--  168 (251)
T PF07091_consen   94 EFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP--  168 (251)
T ss_dssp             HHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT--
T ss_pred             HHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC--
Confidence            344444433 347899999999998888777543 3689999999999999999999998864  4454455543322  


Q ss_pred             hhcccCCCceeEEEEc
Q 029836           88 IQDEKYHGTFDFVFVD  103 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d  103 (187)
                            .+..|+.++-
T Consensus       169 ------~~~~DlaLll  178 (251)
T PF07091_consen  169 ------KEPADLALLL  178 (251)
T ss_dssp             ------TSEESEEEEE
T ss_pred             ------CCCcchhhHH
Confidence                  5678999874

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=97.65  E-value=0.0012  Score=49.67  Aligned_cols=117  Identities=14%  Similarity=0.159  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHh------hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC
Q 029836            5 PDEAQFFSMLLK------LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG   78 (187)
Q Consensus         5 ~~~~~~l~~l~~------~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~   78 (187)
                      |...++...++.      +.+..+||-+|+++|.+....+....+.+-|.+||.++..=+..-...++   .+|+--+..
T Consensus       136 PfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk---RtNiiPIiE  212 (317)
T KOG1596|consen  136 PFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK---RTNIIPIIE  212 (317)
T ss_pred             hHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc---cCCceeeec
Confidence            444555555442      34567999999999999999999888889999999998765443332222   257777777


Q ss_pred             CchHHHHHHhhcccCCCceeEEEEcCCCcccHH-HHHHHHhcccCCeEEEE
Q 029836           79 PALPLLDQLIQDEKYHGTFDFVFVDADKDNYVN-YHKRLIELVKVGGVIGY  128 (187)
Q Consensus        79 d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~-~~~~~~~~L~~gG~lv~  128 (187)
                      |+...-.-..    .-+-.|+||.|-.+.+... ..-.+...||+||-+++
T Consensus       213 DArhP~KYRm----lVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvi  259 (317)
T KOG1596|consen  213 DARHPAKYRM----LVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVI  259 (317)
T ss_pred             cCCCchheee----eeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEE
Confidence            8764322100    0357899999987544433 33456679999998876

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=0.00026  Score=50.02  Aligned_cols=105  Identities=18%  Similarity=0.132  Sum_probs=67.7

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC--CceEEEeCCchHHHHHHhhcccCC
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA--HKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..+++|||+|.| +|..++.+|...+ ...|...|-+++.++..++....+-..  .++....-.  ..-.+...+   .
T Consensus        28 ~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~--~~~aqsq~e---q  101 (201)
T KOG3201|consen   28 IRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL--IWGAQSQQE---Q  101 (201)
T ss_pred             HhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH--HhhhHHHHh---h
Confidence            356899999988 4556666776655 689999999999998888766543111  122111111  111111111   3


Q ss_pred             CceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEE
Q 029836           95 GTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        95 ~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..||+|++...   .+.+....+.++.+|+|.|.-++
T Consensus       102 ~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~  138 (201)
T KOG3201|consen  102 HTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALL  138 (201)
T ss_pred             CcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence            58999986432   56677888899999999987554

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.58  E-value=6.8e-05  Score=55.93  Aligned_cols=97  Identities=11%  Similarity=0.096  Sum_probs=71.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      -..++||||+.|.....+....  -.+++-+|.+..+++.++..-. .++  .+..+.+|- ++++ +.     ++++|+
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-p~i--~~~~~v~DE-E~Ld-f~-----ens~DL  140 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-PSI--ETSYFVGDE-EFLD-FK-----ENSVDL  140 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-Cce--EEEEEecch-hccc-cc-----ccchhh
Confidence            4589999999999999887542  4789999999999987765221 111  233455554 4555 32     679999


Q ss_pred             EEEcC---CCcccHHHHHHHHhcccCCeEEEE
Q 029836          100 VFVDA---DKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus       100 v~~d~---~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+...   |.-+.+..+..|...|||.|.++.
T Consensus       141 iisSlslHW~NdLPg~m~~ck~~lKPDg~Fia  172 (325)
T KOG2940|consen  141 IISSLSLHWTNDLPGSMIQCKLALKPDGLFIA  172 (325)
T ss_pred             hhhhhhhhhhccCchHHHHHHHhcCCCccchh
Confidence            98664   356778899999999999999985

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.52  E-value=0.00012  Score=56.05  Aligned_cols=114  Identities=17%  Similarity=0.092  Sum_probs=66.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCc--------------------------
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK--------------------------   72 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~--------------------------   72 (187)
                      ++.++||||||.-.  ..++.+.+...++++.|..+...+..++.++..+.-+.                          
T Consensus        56 ~g~~llDiGsGPti--y~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTI--YQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT----GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHH--HhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            45689999998733  23344433346899999999999888888876532110                          


Q ss_pred             -e-EEEeCCchHHHHHHhhcccCCCceeEEEEcCC-------CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           73 -I-DFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-------KDNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        73 -i-~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                       + +++.+|..+.-+ +.......+++|+|+.-..       .+.|...++.+.++|||||.|++..++-..
T Consensus       134 ~Vk~Vv~cDV~~~~p-l~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t  204 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNP-LDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST  204 (256)
T ss_dssp             HEEEEEE--TTSSST-TTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S
T ss_pred             hhceEEEeeccCCCC-CCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce
Confidence             1 122333222100 0000000235999976532       456788889999999999999997776543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.46  E-value=0.0016  Score=50.29  Aligned_cols=111  Identities=17%  Similarity=0.180  Sum_probs=70.4

Q ss_pred             HHHHHHHhhcC-------CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC----------
Q 029836            9 QFFSMLLKLIN-------AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH----------   71 (187)
Q Consensus         9 ~~l~~l~~~~~-------~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~----------   71 (187)
                      -++..|-...+       ..+||-=|||.|.++.+++..   +..+.+.|.|--|+-...-.+.......          
T Consensus        39 ~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~  115 (270)
T PF07942_consen   39 PILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS  115 (270)
T ss_pred             HHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence            34555554443       369999999999999999976   5789999999887643333222111111          


Q ss_pred             -----------------------------ceEEEeCCchHHHHHHhhcccCCCceeEEE----EcCCCcccHHHHHHHHh
Q 029836           72 -----------------------------KIDFREGPALPLLDQLIQDEKYHGTFDFVF----VDADKDNYVNYHKRLIE  118 (187)
Q Consensus        72 -----------------------------~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~----~d~~~~~~~~~~~~~~~  118 (187)
                                                   ++.+..||..+.-..-.    ..++||.|+    +|- .....++++.+.+
T Consensus       116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~----~~~~~d~VvT~FFIDT-A~Ni~~Yi~tI~~  190 (270)
T PF07942_consen  116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDE----NKGSFDVVVTCFFIDT-AENIIEYIETIEH  190 (270)
T ss_pred             ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcc----cCCcccEEEEEEEeec-hHHHHHHHHHHHH
Confidence                                         23333344333221100    025888884    443 4667899999999


Q ss_pred             cccCCeEEE
Q 029836          119 LVKVGGVIG  127 (187)
Q Consensus       119 ~L~~gG~lv  127 (187)
                      +|||||+-|
T Consensus       191 lLkpgG~WI  199 (270)
T PF07942_consen  191 LLKPGGYWI  199 (270)
T ss_pred             HhccCCEEE
Confidence            999999665

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.45  E-value=0.0018  Score=46.92  Aligned_cols=103  Identities=14%  Similarity=0.214  Sum_probs=65.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-CchH--HHHHHhhcccCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALP--LLDQLIQDEKYH   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~--~l~~~~~~~~~~   94 (187)
                      .+..+|||+||..|.|+--.-+...+.+.|.+||+-.-.           . .+-++++++ |..+  ...++..... +
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p-~~Ga~~i~~~dvtdp~~~~ki~e~lp-~  134 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------P-PEGATIIQGNDVTDPETYRKIFEALP-N  134 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------C-CCCcccccccccCCHHHHHHHHHhCC-C
Confidence            356799999999999998887777668999999985311           1 134555555 3322  2222221111 4


Q ss_pred             CceeEEEEcCC-------CcccHHHHHHH-------HhcccCCeEEEEeCcCCCc
Q 029836           95 GTFDFVFVDAD-------KDNYVNYHKRL-------IELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        95 ~~~D~v~~d~~-------~~~~~~~~~~~-------~~~L~~gG~lv~~~~~~~~  135 (187)
                      ...|+|+.|..       ..++...++.|       ...++|+|.+++.  +|.|
T Consensus       135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g  187 (232)
T KOG4589|consen  135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDG  187 (232)
T ss_pred             CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecC
Confidence            58899999964       12333333333       4678899999985  4544

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.30  E-value=0.0014  Score=52.16  Aligned_cols=116  Identities=16%  Similarity=0.196  Sum_probs=78.2

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh--hc
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPD---DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI--QD   90 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~---~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~--~~   90 (187)
                      ...+..+|||+.+..|.-+..+++.+-.   .+.|+|=|.++..+...+..++.... ++..+...++..+ +...  ..
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~-p~~~~~~~  229 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLF-PNIYLKDG  229 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceec-cccccccC
Confidence            4557789999999999999998887642   25899999999999888887755443 4455544444322 2110  00


Q ss_pred             c-cCCCceeEEEEcCCC------cc--------------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           91 E-KYHGTFDFVFVDADK------DN--------------------YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        91 ~-~~~~~~D~v~~d~~~------~~--------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      + .....||-|++|.+.      ..                    ....+....++||+||.+|.+.+..
T Consensus       230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence            0 013579999999540      00                    1345666778999999999876543

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.28  E-value=0.0006  Score=49.69  Aligned_cols=105  Identities=14%  Similarity=0.116  Sum_probs=61.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHH------HHHHHHHHcCCCCceEEEeCCchHHHHHHhhc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYE------KGLPIIQKAGVAHKIDFREGPALPLLDQLIQD   90 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~------~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~   90 (187)
                      +.+..+|+|+-.|.|++|.-++..+.+.+.|++.-+.+...-      ......++... .|.+.+-.+...+.+     
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~~-----  119 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALGA-----  119 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccCC-----
Confidence            445679999999999999999998887788888766543110      00111111111 233333222222111     


Q ss_pred             ccCCCceeEEEEcCC----------CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           91 EKYHGTFDFVFVDAD----------KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~----------~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                         .+..|+++....          ......++..+.+.|||||++++.|
T Consensus       120 ---pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d  166 (238)
T COG4798         120 ---PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED  166 (238)
T ss_pred             ---CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence               345566543211          2234567788899999999887744

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.28  E-value=0.00047  Score=55.47  Aligned_cols=106  Identities=15%  Similarity=0.126  Sum_probs=78.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++..++++|||.|....+++.. . ...+++++.++..+..+.......++.++..++.++......       ++..|
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f-~-~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f-------edn~f  179 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVF-K-KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF-------EDNTF  179 (364)
T ss_pred             cccccccccCcCcCchhHHHHHh-c-cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC-------Ccccc
Confidence            34457899999999999998875 2 578999999998887777777766666555555555443211       15688


Q ss_pred             eEEE-EcCC--CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           98 DFVF-VDAD--KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        98 D~v~-~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |.+. ++..  .......++++.+.++|||+.+.-++.
T Consensus       180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i  217 (364)
T KOG1269|consen  180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI  217 (364)
T ss_pred             CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence            9886 4433  566788999999999999999986553

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.25  E-value=0.00028  Score=55.82  Aligned_cols=108  Identities=17%  Similarity=0.166  Sum_probs=65.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ...|++|||+|.|.|.....+-.-+|.-.+++.+|.++..-+........... ........+...-...+.    ..+.
T Consensus       111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp----~ad~  185 (484)
T COG5459         111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLP----AADL  185 (484)
T ss_pred             CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCC----ccce
Confidence            34688999999999886665555566446778888888655444332222222 222222333222111111    1457


Q ss_pred             eeEEEEcCC------CcccHHHHHHHHhcccCCeEEEEe
Q 029836           97 FDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        97 ~D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+++++-..      .......++.+|.++.|||.||+-
T Consensus       186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv  224 (484)
T COG5459         186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV  224 (484)
T ss_pred             eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence            888875432      334556889999999999999864

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.25  E-value=0.0043  Score=49.43  Aligned_cols=97  Identities=13%  Similarity=0.131  Sum_probs=68.2

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+.++|+-+|+| .|..++.+++++  +.+|+++|.+++..+.|++.    |.   -.++.....+..+..      .+
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~------~~  228 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAV------KE  228 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHh------Hh
Confidence            4456788887776 556888889877  48999999999998888763    22   223333222444444      23


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .+|+|+.-..    ...++...+.|++||.+++-...
T Consensus       229 ~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         229 IADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             hCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence            5899987543    56677888899999999986655

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=97.24  E-value=0.011  Score=44.83  Aligned_cols=111  Identities=14%  Similarity=0.110  Sum_probs=79.2

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhc
Q 029836           14 LLKLINAKNTMEIGVFTGYSLLATALAIPD---DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD   90 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~---~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~   90 (187)
                      ++....+...+|+|+|+-.-+..++.++..   -.+.+.+|++...++...+.+.+....-.+.-+.+|.+..+..+.. 
T Consensus        73 ia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~-  151 (321)
T COG4301          73 IASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPR-  151 (321)
T ss_pred             HHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccC-
Confidence            445567889999999999989988888753   2589999999998875555444432223455577888777766531 


Q ss_pred             ccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836           91 EKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                         .+.-=++|+...     ++....|+..+...|+||-++++
T Consensus       152 ---~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll  191 (321)
T COG4301         152 ---GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL  191 (321)
T ss_pred             ---CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence               223344555533     56778899999999999998876

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.19  E-value=0.00099  Score=52.61  Aligned_cols=92  Identities=14%  Similarity=0.088  Sum_probs=68.9

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHH-------HHHHHHHHcCCCCc-eEE
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYE-------KGLPIIQKAGVAHK-IDF   75 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~-------~a~~~~~~~~~~~~-i~~   75 (187)
                      .++-.-++..++...+++.|.|=-.|+|......+.-   ++.|++.||+-.+++       ..+.|+++.|..++ ..+
T Consensus       193 DAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldv  269 (421)
T KOG2671|consen  193 DAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDV  269 (421)
T ss_pred             chhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhhe
Confidence            3455556666777778899999999999887766653   689999999887766       56889999997654 466


Q ss_pred             EeCCchH-HHHHHhhcccCCCceeEEEEcCC
Q 029836           76 REGPALP-LLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        76 ~~~d~~~-~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      +.+|... .+..       +-.||.|++|++
T Consensus       270 l~~D~sn~~~rs-------n~~fDaIvcDPP  293 (421)
T KOG2671|consen  270 LTADFSNPPLRS-------NLKFDAIVCDPP  293 (421)
T ss_pred             eeecccCcchhh-------cceeeEEEeCCC
Confidence            7777654 2322       458999999976

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=97.15  E-value=0.00029  Score=54.54  Aligned_cols=100  Identities=15%  Similarity=0.077  Sum_probs=72.1

Q ss_pred             CCEEEEEcccccHHHH-HHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           20 AKNTMEIGVFTGYSLL-ATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~-~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ...|+|+.+|.||.+. ++..+ + ...|+|+|.+|..++..+.+++.++...+..++.+|....-+        ....|
T Consensus       195 ~eviVDLYAGIGYFTlpflV~a-g-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--------~~~Ad  264 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTA-G-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--------RLRAD  264 (351)
T ss_pred             cchhhhhhcccceEEeehhhcc-C-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--------cccch
Confidence            4789999999999999 44443 2 478999999999999999999999888888888888765433        34667


Q ss_pred             EEEEcCC---CcccHHHHHHHHhcccCCe-EEEEeCcC
Q 029836           99 FVFVDAD---KDNYVNYHKRLIELVKVGG-VIGYDNTL  132 (187)
Q Consensus        99 ~v~~d~~---~~~~~~~~~~~~~~L~~gG-~lv~~~~~  132 (187)
                      -|.+..-   .+.++.+.+.   +=.+|| ++-++...
T Consensus       265 rVnLGLlPSse~~W~~A~k~---Lk~eggsilHIHenV  299 (351)
T KOG1227|consen  265 RVNLGLLPSSEQGWPTAIKA---LKPEGGSILHIHENV  299 (351)
T ss_pred             heeeccccccccchHHHHHH---hhhcCCcEEEEeccc
Confidence            7776643   4445554443   333566 66555443

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.07  E-value=0.011  Score=46.45  Aligned_cols=121  Identities=14%  Similarity=0.106  Sum_probs=76.7

Q ss_pred             CCHHHHHHHHHHH---------hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCc
Q 029836            3 TSPDEAQFFSMLL---------KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK   72 (187)
Q Consensus         3 ~~~~~~~~l~~l~---------~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~   72 (187)
                      ++-+.+.+++-|.         ......++|-+|+| .|..+.-.|++++ ..+|+.+|+.++.++.|++ +   |...-
T Consensus       144 vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~  218 (354)
T KOG0024|consen  144 VSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVT  218 (354)
T ss_pred             CchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEE
Confidence            4455566665543         23456799999999 5777777888887 6899999999999999988 4   43211


Q ss_pred             eEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           73 IDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        73 i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ...-+.+..+.+.+..........+|+.|--.   ....-++.....++.||.+++..+
T Consensus       219 ~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCs---G~~~~~~aai~a~r~gGt~vlvg~  274 (354)
T KOG0024|consen  219 DPSSHKSSPQELAELVEKALGKKQPDVTFDCS---GAEVTIRAAIKATRSGGTVVLVGM  274 (354)
T ss_pred             eeccccccHHHHHHHHHhhccccCCCeEEEcc---CchHHHHHHHHHhccCCEEEEecc
Confidence            11222222233333322221123588888432   234556667788999999887654

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.07  E-value=0.0052  Score=51.68  Aligned_cols=131  Identities=19%  Similarity=0.267  Sum_probs=91.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPD---DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP   79 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~---~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d   79 (187)
                      ++.++.+++..++...+..+|.|-.||+|.......+.+..   ...+.+.|+++.....++.|+--+|....+...++|
T Consensus       170 TP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d  249 (489)
T COG0286         170 TPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD  249 (489)
T ss_pred             ChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence            45667778888777655669999999999988887776642   267999999999999999999988885445666776


Q ss_pred             chHHHHHHhhcccCCCceeEEEEcCCC----------------------------cccHHHHHHHHhcccCCe---EEEE
Q 029836           80 ALPLLDQLIQDEKYHGTFDFVFVDADK----------------------------DNYVNYHKRLIELVKVGG---VIGY  128 (187)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~D~v~~d~~~----------------------------~~~~~~~~~~~~~L~~gG---~lv~  128 (187)
                      ........ . ..+.+.||+|+..++-                            .....++..+...|+|||   +++.
T Consensus       250 tl~~~~~~-~-~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~  327 (489)
T COG0286         250 TLSNPKHD-D-KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP  327 (489)
T ss_pred             cccCCccc-c-cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence            65321110 0 0014679988776440                            111567888889999865   5555


Q ss_pred             eCcCCCc
Q 029836          129 DNTLWGG  135 (187)
Q Consensus       129 ~~~~~~~  135 (187)
                      +++++.+
T Consensus       328 ~gvlfr~  334 (489)
T COG0286         328 DGVLFRG  334 (489)
T ss_pred             CCcCcCC
Confidence            6666654

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.05  E-value=0.0089  Score=48.13  Aligned_cols=104  Identities=14%  Similarity=0.065  Sum_probs=68.8

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-CchHHHHHHhhcccCCCc
Q 029836           19 NAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        19 ~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~   96 (187)
                      ++.+++-+|+|. |..+..+++.++ ..+|+.+|.+++.++.|++....    ..+..... +.........    ....
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t----~g~g  238 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELT----GGRG  238 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHh----CCCC
Confidence            334899999984 666677777765 68999999999999999875532    11111111 1111111221    0236


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      +|++|--..   ....++.+.+.+++||.+++-.+...
T Consensus       239 ~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~~~  273 (350)
T COG1063         239 ADVVIEAVG---SPPALDQALEALRPGGTVVVVGVYGG  273 (350)
T ss_pred             CCEEEECCC---CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence            999996443   56688899999999999998666533

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.0034  Score=43.85  Aligned_cols=104  Identities=13%  Similarity=0.063  Sum_probs=72.2

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccC
Q 029836           14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ++...+..+.+|+|+|.|.+.+..++..  --.-+++|.+|.....++-..-+.|+..+.+|+.-|.-.+-         
T Consensus        67 ll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d---------  135 (199)
T KOG4058|consen   67 LLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD---------  135 (199)
T ss_pred             HccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc---------
Confidence            3334455789999999999988877652  24579999999999888877777788778888776654331         


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      -..|..+++-+..+-..+.-..+..-++.+..++.
T Consensus       136 l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva  170 (199)
T KOG4058|consen  136 LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA  170 (199)
T ss_pred             ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence            23455555555444455555666667778887773

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.00  E-value=0.0019  Score=52.65  Aligned_cols=59  Identities=20%  Similarity=0.237  Sum_probs=51.7

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836           22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      .+||||+|+|..+...+++.  .-.|+++|.-..+.+.|++...++|..++|+++.-.+.+
T Consensus        69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte  127 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE  127 (636)
T ss_pred             EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence            67999999999999888875  356999999999999999999999999999888766544

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=96.87  E-value=0.0081  Score=45.76  Aligned_cols=111  Identities=12%  Similarity=0.168  Sum_probs=61.5

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      ...++..+...+.... +...+|+=.++..+++   +.-+.+++|..+.-.+..++++...   .++++++.|..+.+..
T Consensus        46 l~~yl~~v~~~n~~~~-l~~YPGSP~ia~~llR---~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~a  118 (245)
T PF04378_consen   46 LQPYLDAVRALNPDGE-LRFYPGSPAIAARLLR---EQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKA  118 (245)
T ss_dssp             GHHHHHHHHHHSSSSS---EEE-HHHHHHHHS----TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHH
T ss_pred             HHHHHHHHHHhccCCC-cCcCCCCHHHHHHhCC---ccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhh
Confidence            3455555554444333 5566655555555543   3679999999999999888888652   6899999999987766


Q ss_pred             HhhcccCCCceeEEEEcCC---CcccHHHHHHHHhccc--CCeEEE
Q 029836           87 LIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVK--VGGVIG  127 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~--~gG~lv  127 (187)
                      +.+.   ..+==+|+||++   +.+|....+.+...++  +.|+++
T Consensus       119 llPP---~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~  161 (245)
T PF04378_consen  119 LLPP---PERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYA  161 (245)
T ss_dssp             H-S----TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEE
T ss_pred             hCCC---CCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEE
Confidence            6433   334569999997   4556665555554444  556554

; PDB: 2OO3_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.80  E-value=0.0049  Score=51.12  Aligned_cols=97  Identities=15%  Similarity=0.211  Sum_probs=57.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      +-.+|+|+.+|.|..+..|.+. +    |..+-.-|..-...-..+-..|+   +-+. -|..+.++..      ..+||
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~-~----VWVMNVVP~~~~ntL~vIydRGL---IG~y-hDWCE~fsTY------PRTYD  429 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDD-P----VWVMNVVPVSGPNTLPVIYDRGL---IGVY-HDWCEAFSTY------PRTYD  429 (506)
T ss_pred             ceeeeeeecccccHHHHHhccC-C----ceEEEecccCCCCcchhhhhccc---chhc-cchhhccCCC------Ccchh
Confidence            4469999999999999888753 2    44333333211111112222232   1111 1334444443      67899


Q ss_pred             EEEEcCC------CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           99 FVFVDAD------KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        99 ~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|..++-      +-.....+-++-+.|+|||.+++.|
T Consensus       430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD  467 (506)
T PF03141_consen  430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD  467 (506)
T ss_pred             heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence            9998854      2334566777789999999999855

; GO: 0008168 methyltransferase activity

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.76  E-value=0.01  Score=40.35  Aligned_cols=92  Identities=22%  Similarity=0.227  Sum_probs=61.1

Q ss_pred             cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCcc
Q 029836           29 FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDN  108 (187)
Q Consensus        29 g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~  108 (187)
                      |.|..+..+++..+  .+|+++|.++...+.+++    .|...-+.....+..+.+..+..    ...+|+||--..   
T Consensus         1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~~----~~~~d~vid~~g---   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELTG----GRGVDVVIDCVG---   67 (130)
T ss_dssp             HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHTT----TSSEEEEEESSS---
T ss_pred             ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hcccccccccccccccccccccc----cccceEEEEecC---
Confidence            45888999999874  899999999988776654    44211111122233334444321    237999986432   


Q ss_pred             cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836          109 YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus       109 ~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ....++.+..+++++|.+++-....
T Consensus        68 ~~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   68 SGDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             cHHHHHHHHHHhccCCEEEEEEccC
Confidence            3678888999999999999866554

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.66  E-value=0.028  Score=41.85  Aligned_cols=108  Identities=14%  Similarity=0.078  Sum_probs=64.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCchHHHHHHHHHHHcC-----------------------------
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDD-GKILALDITKEHYEKGLPIIQKAG-----------------------------   68 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~-~~v~~vd~~~~~~~~a~~~~~~~~-----------------------------   68 (187)
                      .|-++.|-.||.|+...-+.--.++. ..|++-|+++++++.|++|+.-..                             
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            45699999999999877665433323 689999999999999999886221                             


Q ss_pred             ------------CCCceEEEeCCchHHH--HHHhhcccCCCceeEEEEcCC-------C-----cccHHHHHHHHhcccC
Q 029836           69 ------------VAHKIDFREGPALPLL--DQLIQDEKYHGTFDFVFVDAD-------K-----DNYVNYHKRLIELVKV  122 (187)
Q Consensus        69 ------------~~~~i~~~~~d~~~~l--~~~~~~~~~~~~~D~v~~d~~-------~-----~~~~~~~~~~~~~L~~  122 (187)
                                  -.....+.+.|..+.-  ... +.   ....|+|+.|-+       .     .....+++.+.+.|..
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~-~~---~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~  206 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVL-DA---GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE  206 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHH-HT---T---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhh-cc---CCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC
Confidence                        0112445555554422  122 11   234699999954       1     1246789999999988


Q ss_pred             CeEEEEeC
Q 029836          123 GGVIGYDN  130 (187)
Q Consensus       123 gG~lv~~~  130 (187)
                      ++++++.|
T Consensus       207 ~sVV~v~~  214 (246)
T PF11599_consen  207 RSVVAVSD  214 (246)
T ss_dssp             T-EEEEEE
T ss_pred             CcEEEEec
Confidence            88888744

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PRK13699 putative methylase; Provisional

Probab=96.65  E-value=0.0033  Score=47.49  Aligned_cols=51  Identities=12%  Similarity=0.189  Sum_probs=40.2

Q ss_pred             eEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc------------------ccHHHHHHHHhcccCCeEEEE
Q 029836           73 IDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD------------------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        73 i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~------------------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+++++|+.+.++.+.     ++++|+|+.|++.-                  -...++.++.+.|||||.+++
T Consensus         2 ~~l~~gD~le~l~~lp-----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          2 SRFILGNCIDVMARFP-----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             CeEEechHHHHHHhCC-----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            3688999999988875     67999999997621                  123567888899999998875

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.63  E-value=0.012  Score=39.19  Aligned_cols=88  Identities=17%  Similarity=0.060  Sum_probs=57.4

Q ss_pred             ccccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCceeEEEEcC
Q 029836           28 VFTGYSLLATALAIPDDG-KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGTFDFVFVDA  104 (187)
Q Consensus        28 ~g~G~~~~~l~~~~~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~D~v~~d~  104 (187)
                      ||.|..+..+++.+.... .++.+|.+++..+.+++        ..+.++.||+.+  .+.+..     -.+.+.+++..
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~-----i~~a~~vv~~~   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE--------EGVEVIYGDATDPEVLERAG-----IEKADAVVILT   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH--------TTSEEEES-TTSHHHHHHTT-----GGCESEEEEES
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh--------cccccccccchhhhHHhhcC-----ccccCEEEEcc
Confidence            455778888887775455 89999999998776654        236788898865  355442     35789998876


Q ss_pred             CCcccHHHHHHHHhcccCCeEEEE
Q 029836          105 DKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus       105 ~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ......-..-...+.+.+...+++
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   71 DDDEENLLIALLARELNPDIRIIA   94 (116)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCeEEE
Confidence            544333333344466667766664

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.51  E-value=0.0041  Score=46.22  Aligned_cols=80  Identities=14%  Similarity=0.158  Sum_probs=52.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-HHHHhhcccCCCceeE
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LDQLIQDEKYHGTFDF   99 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~~~D~   99 (187)
                      .++|||||=+......-..    --.|+.||+++.                .-.+.+.|+.+. +|..     +.++||+
T Consensus        53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~-----~~e~Fdv  107 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQ----------------HPGILQQDFMERPLPKN-----ESEKFDV  107 (219)
T ss_pred             ceEEeecccCCCCcccccC----ceeeEEeecCCC----------------CCCceeeccccCCCCCC-----cccceeE
Confidence            5899999975544332211    246999999862                233455566553 3332     1578999


Q ss_pred             EEEcC------CCcccHHHHHHHHhcccCCeE
Q 029836          100 VFVDA------DKDNYVNYHKRLIELVKVGGV  125 (187)
Q Consensus       100 v~~d~------~~~~~~~~~~~~~~~L~~gG~  125 (187)
                      |.+..      .+...-+.+..+..+|+++|.
T Consensus       108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen  108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL  139 (219)
T ss_pred             EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence            97653      244556788899999999999

>PRK11524 putative methyltransferase; Provisional

Probab=96.51  E-value=0.0067  Score=47.38  Aligned_cols=54  Identities=19%  Similarity=0.300  Sum_probs=41.7

Q ss_pred             CceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc---c------------c----HHHHHHHHhcccCCeEEEEe
Q 029836           71 HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD---N------------Y----VNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        71 ~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~---~------------~----~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+.+++++|+.+.+..+.     .+++|+|++|++..   .            +    ..++..+.++||+||.+++.
T Consensus         7 ~~~~i~~gD~~~~l~~l~-----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          7 EAKTIIHGDALTELKKIP-----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCCEEEeccHHHHHHhcc-----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            456789999999887663     56899999998621   0            1    35778889999999999863

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.49  E-value=0.0041  Score=46.63  Aligned_cols=80  Identities=14%  Similarity=0.281  Sum_probs=56.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHc-CCCCceEEEe-CCchHHHHHHhhcccCCCce
Q 029836           21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKA-GVAHKIDFRE-GPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~-~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~~   97 (187)
                      -++||||+|.-  .++=+-... -+.+.++.|+++..++.|+.++..+ ++...++++. -|....++.+...   ++.|
T Consensus        80 i~~LDIGvGAn--CIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~---nE~y  154 (292)
T COG3129          80 IRILDIGVGAN--CIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGK---NERY  154 (292)
T ss_pred             eEEEeeccCcc--cccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccc---ccee
Confidence            47899988654  344221111 1468999999999999999999988 7767787754 4554555554322   5799


Q ss_pred             eEEEEcCC
Q 029836           98 DFVFVDAD  105 (187)
Q Consensus        98 D~v~~d~~  105 (187)
                      |+..++++
T Consensus       155 d~tlCNPP  162 (292)
T COG3129         155 DATLCNPP  162 (292)
T ss_pred             eeEecCCC
Confidence            99999887

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=96.43  E-value=0.038  Score=38.62  Aligned_cols=114  Identities=14%  Similarity=0.173  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            7 EAQFFSMLLKLIN--AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         7 ~~~~l~~l~~~~~--~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      |...|...+....  +.-|||+|-|.|..=-.+-+.+| +-+++.+|-.-..-.        ...++.-.+++|+..+.+
T Consensus        14 QR~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp--------~~~P~~~~~ilGdi~~tl   84 (160)
T PF12692_consen   14 QRDCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHP--------SSTPPEEDLILGDIRETL   84 (160)
T ss_dssp             HHHHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-G--------GG---GGGEEES-HHHHH
T ss_pred             HHHHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCC--------CCCCchHheeeccHHHHh
Confidence            3444555555443  35899999999998888888888 789999997432111        012245578999999988


Q ss_pred             HHHhhcccCCCceeEEEEcCC---Ccc---cHHHH-HHHHhcccCCeEEEEeCcC
Q 029836           85 DQLIQDEKYHGTFDFVFVDAD---KDN---YVNYH-KRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~---~~~---~~~~~-~~~~~~L~~gG~lv~~~~~  132 (187)
                      +.+...   ..+.-++..|..   ++.   ...++ ..+.++|.+||+++-..-+
T Consensus        85 ~~~~~~---g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl  136 (160)
T PF12692_consen   85 PALARF---GAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPL  136 (160)
T ss_dssp             HHHHHH----S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS--
T ss_pred             HHHHhc---CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence            873322   346667777743   111   11222 3445899999999865443

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.43  E-value=0.078  Score=44.81  Aligned_cols=109  Identities=17%  Similarity=0.178  Sum_probs=67.1

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC------------chHHH
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP------------ALPLL   84 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d------------~~~~l   84 (187)
                      .++.+|+-+|+| .|..++..++.++  ++|+++|.+++.++.+++    .|. ..+.+-..+            ..++.
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA-~~v~i~~~e~~~~~~gya~~~s~~~~  235 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGA-EFLELDFEEEGGSGDGYAKVMSEEFI  235 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCC-eEEEeccccccccccchhhhcchhHH
Confidence            468899999998 4667777888774  589999999998887765    332 111110000            01111


Q ss_pred             H---HHhhcccCCCceeEEEEcCCCc--ccHHH-HHHHHhcccCCeEEEEeCcCCCc
Q 029836           85 D---QLIQDEKYHGTFDFVFVDADKD--NYVNY-HKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        85 ~---~~~~~~~~~~~~D~v~~d~~~~--~~~~~-~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      .   ....+  .-..+|+|+--....  ..+.. .+.+.+.+|+||+++.-.+...+
T Consensus       236 ~~~~~~~~~--~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG  290 (509)
T PRK09424        236 KAEMALFAE--QAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGG  290 (509)
T ss_pred             HHHHHHHHh--ccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCC
Confidence            1   11000  014689998665421  12344 58999999999999876654444

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.37  E-value=0.0011  Score=48.81  Aligned_cols=96  Identities=9%  Similarity=0.041  Sum_probs=64.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      .|.++||+|+|.|-++..++..+   .+|.+.|.|..|....++    .    +..+.  ...+.+..       +-+||
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k----k----~ynVl--~~~ew~~t-------~~k~d  171 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK----K----NYNVL--TEIEWLQT-------DVKLD  171 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh----c----CCcee--eehhhhhc-------Cceee
Confidence            46799999999999999887543   468999999888765543    1    22222  22233321       34789


Q ss_pred             EEEEcCC---CcccHHHHHHHHhcccC-CeEEEEeCcCCC
Q 029836           99 FVFVDAD---KDNYVNYHKRLIELVKV-GGVIGYDNTLWG  134 (187)
Q Consensus        99 ~v~~d~~---~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~  134 (187)
                      +|.+-.-   ..+....++.++..|+| +|.+|+.=++.-
T Consensus       172 li~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~  211 (288)
T KOG3987|consen  172 LILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPY  211 (288)
T ss_pred             hHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecc
Confidence            8865332   34456788889999998 888877655543

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=96.29  E-value=0.01  Score=40.49  Aligned_cols=50  Identities=28%  Similarity=0.397  Sum_probs=38.3

Q ss_pred             ceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-C----cc-cHHHHHHHHhcccCCeEEE
Q 029836           72 KIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-K----DN-YVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        72 ~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-~----~~-~~~~~~~~~~~L~~gG~lv  127 (187)
                      ++++..||+.+.++++      ...+|++|.|+. +    +- ..++|..+.+++++||.+.
T Consensus        32 ~L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~   87 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLA   87 (124)
T ss_dssp             EEEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEE
Confidence            4677889999999987      578999999985 1    11 3789999999999999998

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.25  E-value=0.091  Score=42.75  Aligned_cols=106  Identities=17%  Similarity=0.193  Sum_probs=66.1

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC-chHHHHHHhhcccC
Q 029836           16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP-ALPLLDQLIQDEKY   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~l~~~~~~~~~   93 (187)
                      ...+..+||.+|+|. |..+..+++..+ ..++++++.+++..+.+++..   +. ..+.....+ ..+.+..+.    .
T Consensus       181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~----~  251 (386)
T cd08283         181 EVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT----G  251 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc----C
Confidence            344567999999987 888888888864 347999999998888777642   21 112222221 222222221    0


Q ss_pred             CCceeEEEEcCCC------------------cccHHHHHHHHhcccCCeEEEEeC
Q 029836           94 HGTFDFVFVDADK------------------DNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        94 ~~~~D~v~~d~~~------------------~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ...+|+|+--...                  .+....++.+.+.++++|.++.-.
T Consensus       252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            2368988753211                  123457788889999999888643

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=96.20  E-value=0.12  Score=39.30  Aligned_cols=111  Identities=11%  Similarity=0.099  Sum_probs=75.2

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      ...++..+-..++... |...+|+-..+..+++.   .-++.++|..|+-....+++|..   ..++++..+|....+..
T Consensus        77 l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~~---d~~vrv~~~DG~~~l~a  149 (279)
T COG2961          77 LEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFAG---DRRVRVLRGDGFLALKA  149 (279)
T ss_pred             HHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhCC---CcceEEEecCcHHHHhh
Confidence            3344444444444444 78888887777766654   56899999999999999999873   36899999999876655


Q ss_pred             HhhcccCCCceeEEEEcCC---CcccHHHHHHHHhccc--CCeEEE
Q 029836           87 LIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVK--VGGVIG  127 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~--~gG~lv  127 (187)
                      ..+.   .+.=-+|+||++   +.+|....+.+...++  ++|++.
T Consensus       150 ~LPP---~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~ya  192 (279)
T COG2961         150 HLPP---KERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYA  192 (279)
T ss_pred             hCCC---CCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEE
Confidence            4332   345579999998   4556665555544333  445444

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.17  E-value=0.027  Score=43.51  Aligned_cols=102  Identities=18%  Similarity=0.165  Sum_probs=72.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      .++.|+-+|=-.=.+...++..+|  .++..||+++..+....+..++.|. ++++.+.-|....+|+-.     ..+||
T Consensus       152 ~gK~I~vvGDDDLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~-----~~kFD  223 (354)
T COG1568         152 EGKEIFVVGDDDLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDL-----KRKFD  223 (354)
T ss_pred             CCCeEEEEcCchhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHH-----HhhCC
Confidence            456799998433333333344444  6899999999999999999999998 678888888888777654     57999


Q ss_pred             EEEEcCCC--cccHHHHHHHHhcccCC---eEEEE
Q 029836           99 FVFVDADK--DNYVNYHKRLIELVKVG---GVIGY  128 (187)
Q Consensus        99 ~v~~d~~~--~~~~~~~~~~~~~L~~g---G~lv~  128 (187)
                      +++-|++.  .....|+..-...|+.-   |++-+
T Consensus       224 vfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgi  258 (354)
T COG1568         224 VFITDPPETIKALKLFLGRGIATLKGEGCAGYFGI  258 (354)
T ss_pred             eeecCchhhHHHHHHHHhccHHHhcCCCccceEee
Confidence            99999862  23455555555666655   56554

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=96.06  E-value=0.035  Score=46.56  Aligned_cols=112  Identities=12%  Similarity=0.053  Sum_probs=79.2

Q ss_pred             HHHHHHHHhhcC------CCEEEEEcccccHHHHHHHhh---CCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC
Q 029836            8 AQFFSMLLKLIN------AKNTMEIGVFTGYSLLATALA---IPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG   78 (187)
Q Consensus         8 ~~~l~~l~~~~~------~~~vLeiG~g~G~~~~~l~~~---~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~   78 (187)
                      .+++.+|....+      ...|+-+|.|.|-.....+++   ..+.-++++||-+|.++...+. .+-.....+++++.+
T Consensus       350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~  428 (649)
T KOG0822|consen  350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISS  428 (649)
T ss_pred             HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEec
Confidence            445555554422      336788999999877665443   2334689999999999876654 333345579999999


Q ss_pred             CchHHHHHHhhcccCCCceeEEEEc-----CCCcccHHHHHHHHhcccCCeEEE
Q 029836           79 PALPLLDQLIQDEKYHGTFDFVFVD-----ADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        79 d~~~~l~~~~~~~~~~~~~D~v~~d-----~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |+..+-+.       .++.|+++.-     ++.+--++.++-+.+.|||.|+.|
T Consensus       429 DMR~w~ap-------~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI  475 (649)
T KOG0822|consen  429 DMRKWNAP-------REQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI  475 (649)
T ss_pred             cccccCCc-------hhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence            99876532       2578988643     234556888999999999999887

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.03  E-value=0.084  Score=42.15  Aligned_cols=98  Identities=16%  Similarity=0.232  Sum_probs=58.2

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      +.++||-+|+| .|..+..+++..+ ..+++++|.+++.++.+++    .|...-+.....+.    ......   .+.+
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~----~~~~~~---~g~~  236 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDL----DHYKAE---KGYF  236 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccH----HHHhcc---CCCC
Confidence            56789988875 3445556676653 3479999999988877654    34311111111111    122111   2458


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |+||--..   ....++.+.+.|++||.++.-..
T Consensus       237 D~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        237 DVSFEVSG---HPSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             CEEEECCC---CHHHHHHHHHHhhcCCEEEEEcc
Confidence            98874322   23456778889999999987553

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=96.01  E-value=0.28  Score=37.87  Aligned_cols=111  Identities=9%  Similarity=0.010  Sum_probs=66.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC--CCceEEEeCCchHHH-HHHhhcccCCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV--AHKIDFREGPALPLL-DQLIQDEKYHG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~l-~~~~~~~~~~~   95 (187)
                      ....|+.+|||.-.-...+  ..+.+.+++-+|. |+.++.-++.+++.+.  ..+.+++..|..+.+ ..+...+.+..
T Consensus        81 g~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~  157 (260)
T TIGR00027        81 GIRQVVILGAGLDTRAYRL--PWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPT  157 (260)
T ss_pred             CCcEEEEeCCccccHHHhc--CCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence            3568999999665433333  2232355655555 4566777777776543  357788888876433 33332222122


Q ss_pred             ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ..=++++-+.     .+.....++.+..+..+|+.++++-+.
T Consensus       158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            3334444433     445667888887888899999987543

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.98  E-value=0.11  Score=39.74  Aligned_cols=100  Identities=21%  Similarity=0.211  Sum_probs=59.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC-----CCceEEEe---CCchHHHHHHhhc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV-----AHKIDFRE---GPALPLLDQLIQD   90 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~-----~~~i~~~~---~d~~~~l~~~~~~   90 (187)
                      ++.+|||+|+|+|..++.++...  ...++..|... .....+.+...++.     ...+.+..   +++.+... .   
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~-~---  158 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSF-R---  158 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhh-c---
Confidence            46789999999998888777654  47788877744 33333333332222     11333322   23322211 1   


Q ss_pred             ccCCCc-eeEEEEcCC---CcccHHHHHHHHhcccCCeEEEE
Q 029836           91 EKYHGT-FDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        91 ~~~~~~-~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                         .+. +|+|+....   .+.+......+..+|..++.+.+
T Consensus       159 ---~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l  197 (248)
T KOG2793|consen  159 ---LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFL  197 (248)
T ss_pred             ---cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEE
Confidence               233 899986433   55667777888888888885543

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=95.96  E-value=0.3  Score=34.90  Aligned_cols=109  Identities=18%  Similarity=0.231  Sum_probs=62.5

Q ss_pred             CHHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            4 SPDEAQFFSMLLKL--INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         4 ~~~~~~~l~~l~~~--~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      ++++.+.|...+..  ....+|+-|||=+-+..+  .+......+++..|.+.+.        ...+- +...+...+..
T Consensus         8 s~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l--~~~~~~~~~~~Lle~D~RF--------~~~~~-~~F~fyD~~~p   76 (162)
T PF10237_consen    8 SDETAEFLARELLDGALDDTRIACLSTPSLYEAL--KKESKPRIQSFLLEYDRRF--------EQFGG-DEFVFYDYNEP   76 (162)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHH--HhhcCCCccEEEEeecchH--------HhcCC-cceEECCCCCh
Confidence            45555655555544  345689999885544333  2212235789999999753        33332 12444444443


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC--CcccH-HHHHHHHhcccCCeEEEE
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD--KDNYV-NYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~-~~~~~~~~~L~~gG~lv~  128 (187)
                      ..++...     .++||+|++|++  .++.. .....+..++++++.+++
T Consensus        77 ~~~~~~l-----~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~  121 (162)
T PF10237_consen   77 EELPEEL-----KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIIL  121 (162)
T ss_pred             hhhhhhc-----CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEE
Confidence            3344322     579999999997  33333 333444456677777764

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=95.82  E-value=0.056  Score=43.57  Aligned_cols=54  Identities=11%  Similarity=0.122  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHH
Q 029836            7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLP   62 (187)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~   62 (187)
                      ..++++.+......+.++|+|+|.|+.+.+++-.+  +.+|.+||-+....+.|++
T Consensus       141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence            35667777777888999999999999999998765  5899999999766555543

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.80  E-value=0.029  Score=42.19  Aligned_cols=96  Identities=16%  Similarity=0.149  Sum_probs=61.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC----C-C---EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhh
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPD----D-G---KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQ   89 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~----~-~---~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~   89 (187)
                      -++++|+.+..|.|+-.+++.+-.    . .   .+++||+.+-+           .+ +.+.-+++|...  .+..+..
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI-~GV~qlq~DIT~~stae~Ii~  109 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PI-EGVIQLQGDITSASTAEAIIE  109 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------cc-CceEEeecccCCHhHHHHHHH
Confidence            468999999999999998876621    1 1   39999997632           12 345566776532  2222110


Q ss_pred             cccCCCceeEEEEcCCCc-----cc---------HHHHHHHHhcccCCeEEEE
Q 029836           90 DEKYHGTFDFVFVDADKD-----NY---------VNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~~~-----~~---------~~~~~~~~~~L~~gG~lv~  128 (187)
                      . ...++.|+|++|+.+.     +.         ...+......|+|||.+|.
T Consensus       110 h-fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa  161 (294)
T KOG1099|consen  110 H-FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA  161 (294)
T ss_pred             H-hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence            0 0145899999998621     11         2344444579999999985

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.79  E-value=0.027  Score=43.78  Aligned_cols=70  Identities=14%  Similarity=-0.011  Sum_probs=50.8

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEE
Q 029836           22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVF  101 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~  101 (187)
                      +++|+.||.|..+.-+... + -..+.++|+++.+++..+.|+...       +.++|..++.+.-.     ...+|+++
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~-----~~~~D~l~   67 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDF-----IPDIDLLT   67 (275)
T ss_pred             cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhc-----CCCCCEEE
Confidence            6899999999998887764 2 346899999999998888776421       45667665543210     24689999


Q ss_pred             EcCC
Q 029836          102 VDAD  105 (187)
Q Consensus       102 ~d~~  105 (187)
                      .+.+
T Consensus        68 ~gpP   71 (275)
T cd00315          68 GGFP   71 (275)
T ss_pred             eCCC
Confidence            9865

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=95.66  E-value=0.056  Score=43.30  Aligned_cols=49  Identities=10%  Similarity=0.058  Sum_probs=41.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-------CCCEEEEEeCCchHHHHHHHHHHHcC
Q 029836           20 AKNTMEIGVFTGYSLLATALAIP-------DDGKILALDITKEHYEKGLPIIQKAG   68 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~-------~~~~v~~vd~~~~~~~~a~~~~~~~~   68 (187)
                      +-.++|||+|.|..+..+++.+.       ...++..||+|++..+.-++.++...
T Consensus        78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~  133 (370)
T COG1565          78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE  133 (370)
T ss_pred             CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence            45899999999999999887552       25789999999999998888888764

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=95.65  E-value=0.2  Score=39.47  Aligned_cols=99  Identities=20%  Similarity=0.213  Sum_probs=60.1

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+..+||..|+| .|..+..+++..  +.++++++.+++..+.+++    .+...-+.....+..+.+...     ...
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~-----~~~  231 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAG-----LGG  231 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHh-----cCC
Confidence            3456788888865 467777788775  4679999999887766543    343111111111221222111     145


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+|+++--..   ....++.+.+.|+++|.++.-
T Consensus       232 ~~D~vid~~g---~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         232 GFDVIFDFVG---TQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             CceEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence            7998774221   245677888999999999864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=95.64  E-value=0.095  Score=35.66  Aligned_cols=98  Identities=13%  Similarity=0.098  Sum_probs=50.2

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      ++...++...+..+++|+|.|.=.-....+...  +..|+++|+.+..       .+     ..+.++..|..+.-.++ 
T Consensus         3 ~~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~~-------a~-----~g~~~v~DDif~P~l~i-   67 (127)
T PF03686_consen    3 DFAEYIARLNNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPRK-------AP-----EGVNFVVDDIFNPNLEI-   67 (127)
T ss_dssp             HHHHHHHHHS-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S----------------STTEE---SSS--HHH-
T ss_pred             hHHHHHHHhCCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECcccc-------cc-----cCcceeeecccCCCHHH-
Confidence            344555666777899999998776544444432  4799999999871       11     34567777776543333 


Q ss_pred             hcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           89 QDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                           -...|+|+.--++.+....+-.+.+.  -|.-+++
T Consensus        68 -----Y~~a~lIYSiRPP~El~~~il~lA~~--v~adlii  100 (127)
T PF03686_consen   68 -----YEGADLIYSIRPPPELQPPILELAKK--VGADLII  100 (127)
T ss_dssp             -----HTTEEEEEEES--TTSHHHHHHHHHH--HT-EEEE
T ss_pred             -----hcCCcEEEEeCCChHHhHHHHHHHHH--hCCCEEE
Confidence                 35789999766555555545445443  3445554

; PDB: 2K4M_A.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=95.62  E-value=0.16  Score=41.00  Aligned_cols=101  Identities=18%  Similarity=0.215  Sum_probs=58.8

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .+.++||-.|+| .|..+..+++..+ ..+|+++|.+++..+.+++    .|..   .++.....++...+....  .+.
T Consensus       190 ~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~--~~g  259 (371)
T cd08281         190 RPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELT--GGG  259 (371)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHh--CCC
Confidence            456788888864 2445555666643 2369999999988776654    3431   122222222222222111  336


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|+||--.   .....+..+.+.++++|.++.-..
T Consensus       260 ~d~vid~~---G~~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         260 VDYAFEMA---GSVPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CCEEEECC---CChHHHHHHHHHHhcCCEEEEEcc
Confidence            89887422   123567777889999999886443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.42  E-value=0.026  Score=43.29  Aligned_cols=47  Identities=13%  Similarity=0.042  Sum_probs=37.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCchHHHHHHHHHHH
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPD-------DGKILALDITKEHYEKGLPIIQK   66 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~-------~~~v~~vd~~~~~~~~a~~~~~~   66 (187)
                      +-+|+|+|+|.|..+..++..+..       ..+++.||++|.+.+..++.+..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            469999999999999999887652       25899999999999888888765

; PDB: 4F3N_A 1ZKD_B.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.41  E-value=0.23  Score=39.67  Aligned_cols=94  Identities=14%  Similarity=0.075  Sum_probs=56.3

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .+.++||-+|+|. |..+..+++......+++++|.+++.++.+++    .+.   ....    .+ +..       ...
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~-~~~-------~~g  222 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DD-IPE-------DLA  222 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hh-hhh-------ccC
Confidence            3467999999742 22344556542224689999999888777654    221   1111    11 111       224


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|+||--.........++...++|++||.+++-.
T Consensus       223 ~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         223 VDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             CcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence            8988732222224567888889999999998754

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK11524 putative methyltransferase; Provisional

Probab=95.40  E-value=0.075  Score=41.53  Aligned_cols=56  Identities=9%  Similarity=0.042  Sum_probs=44.9

Q ss_pred             HHHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHH
Q 029836            8 AQFFSMLLKLI--NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK   66 (187)
Q Consensus         8 ~~~l~~l~~~~--~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~   66 (187)
                      .++++.++...  ++..|||--+|+|..+....+ +  +-+.+|+|++++.++.|++++..
T Consensus       195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~-l--gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKA-S--GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHH-c--CCCEEEEeCCHHHHHHHHHHHHh
Confidence            46777777654  577999999999987776554 3  46899999999999999999864

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=95.37  E-value=0.38  Score=38.56  Aligned_cols=101  Identities=11%  Similarity=0.032  Sum_probs=61.9

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-CchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~   93 (187)
                      ..+.++||-.|+  +.|..+..+++..  +.++++++.+++..+.+++   ..|...-+..... +..+.+....     
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~-----  225 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYF-----  225 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHC-----
Confidence            445679999987  4677788888876  4689999988877665542   2344211111111 2222233221     


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+.+|+|+- ..-   ...+..+.+.|++||.++.-..
T Consensus       226 ~~gvD~v~d-~vG---~~~~~~~~~~l~~~G~iv~~G~  259 (348)
T PLN03154        226 PEGIDIYFD-NVG---GDMLDAALLNMKIHGRIAVCGM  259 (348)
T ss_pred             CCCcEEEEE-CCC---HHHHHHHHHHhccCCEEEEECc
Confidence            346898883 321   2467788899999999986443

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=95.33  E-value=0.059  Score=46.01  Aligned_cols=95  Identities=17%  Similarity=0.174  Sum_probs=63.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH-----HHHHHhhcc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP-----LLDQLIQDE   91 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----~l~~~~~~~   91 (187)
                      +.+...|||+||..|.|.--.++.+|.++-|++||+-|-.            ..+++..++.|...     .+.....  
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik------------p~~~c~t~v~dIttd~cr~~l~k~l~--  107 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK------------PIPNCDTLVEDITTDECRSKLRKILK--  107 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc------------cCCccchhhhhhhHHHHHHHHHHHHH--
Confidence            3456789999999999999999999988899999997631            11445444444422     2233322  


Q ss_pred             cCCCceeEEEEcCCCc--------c------cHHHHHHHHhcccCCeEEE
Q 029836           92 KYHGTFDFVFVDADKD--------N------YVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~--------~------~~~~~~~~~~~L~~gG~lv  127 (187)
                        ..+.|+|+.|+.+.        .      ....++.+...|+.||.++
T Consensus       108 --t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv  155 (780)
T KOG1098|consen  108 --TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV  155 (780)
T ss_pred             --hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence              35679999997521        1      1334555567889999954

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=95.31  E-value=0.057  Score=38.00  Aligned_cols=43  Identities=16%  Similarity=0.180  Sum_probs=28.3

Q ss_pred             EEccccc--HHHHHHH-hhCCCCCEEEEEeCCchHHHHHHHH--HHHc
Q 029836           25 EIGVFTG--YSLLATA-LAIPDDGKILALDITKEHYEKGLPI--IQKA   67 (187)
Q Consensus        25 eiG~g~G--~~~~~l~-~~~~~~~~v~~vd~~~~~~~~a~~~--~~~~   67 (187)
                      |||++.|  .++.+++ +...+..+++++|++|..++..+++  +...
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            7999999  6666554 2344478999999999999999888  5544

; PDB: 2PY6_A.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=95.20  E-value=0.015  Score=47.38  Aligned_cols=65  Identities=17%  Similarity=0.044  Sum_probs=57.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCc-eEEEeCCchHHHH
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK-IDFREGPALPLLD   85 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~l~   85 (187)
                      ..+..|.|+-||.|-.++.++..   +++|++-|.++++++..+.+++.+.+.+. ++++..|+.+++.
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr  313 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR  313 (495)
T ss_pred             CCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence            35678899999999999988875   58999999999999999999998888766 9999999988884

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=95.06  E-value=0.014  Score=45.15  Aligned_cols=90  Identities=17%  Similarity=0.149  Sum_probs=60.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCce-EEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKI-DFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i-~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ....++|+|||.|-.+.   .. | ...+++.|.+...+..+++        ... .....|+......       ..+|
T Consensus        45 ~gsv~~d~gCGngky~~---~~-p-~~~~ig~D~c~~l~~~ak~--------~~~~~~~~ad~l~~p~~-------~~s~  104 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLG---VN-P-LCLIIGCDLCTGLLGGAKR--------SGGDNVCRADALKLPFR-------EESF  104 (293)
T ss_pred             CcceeeecccCCcccCc---CC-C-cceeeecchhhhhcccccc--------CCCceeehhhhhcCCCC-------CCcc
Confidence            45678999999995322   11 2 5689999999887766553        222 4555666544221       5788


Q ss_pred             eEEEEcCC------CcccHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDAD------KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |.++.-+.      .......++++.+.++|||-..+
T Consensus       105 d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  105 DAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             ccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            88875433      33456788999999999997654

>PRK08114 cystathionine beta-lyase; Provisional

Probab=95.05  E-value=1.1  Score=36.78  Aligned_cols=126  Identities=15%  Similarity=0.088  Sum_probs=75.2

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDI-TKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~-~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|....+=+.++.+-.....+-..+|++.+...+...+.++.+|++.+. ........++.+++.|.  +++++.....+
T Consensus        61 nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi--~v~~vd~~d~~  138 (395)
T PRK08114         61 TLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGV--TTTWFDPLIGA  138 (395)
T ss_pred             ChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCc--EEEEECCCCHH
Confidence            5666777777777777889999999888877666555555667776543 33455566666777765  56665432223


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc---CCeEEEEeCcCCCcc
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK---VGGVIGYDNTLWGGS  136 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~---~gG~lv~~~~~~~~~  136 (187)
                      .+....     .+.-.+|++...  +.-....++.+.++.+   +|-.+++||+...+.
T Consensus       139 ~l~~~l-----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~  192 (395)
T PRK08114        139 DIAKLI-----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGV  192 (395)
T ss_pred             HHHHhc-----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence            333332     334578888764  2211222333333333   356888888865443

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.01  E-value=0.31  Score=38.53  Aligned_cols=102  Identities=13%  Similarity=0.134  Sum_probs=68.1

Q ss_pred             CCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           20 AKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        20 ~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      +.+|.-||.| .|..+.-++..+  ++.|+-+|.+...++.....+.     .+++.+-.+...+-...       .+.|
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v-------~~aD  233 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAV-------KKAD  233 (371)
T ss_pred             CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHh-------hhcc
Confidence            4567777776 466666677665  5899999999988877766553     46777776665544333       4678


Q ss_pred             EEEEc---CCCcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           99 FVFVD---ADKDNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        99 ~v~~d---~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      +++-.   +......-..+++.+.||||++|+=-.+...|
T Consensus       234 lvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGG  273 (371)
T COG0686         234 LVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGG  273 (371)
T ss_pred             EEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCC
Confidence            88633   22344555677888999999999643333333

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.96  E-value=0.33  Score=41.09  Aligned_cols=109  Identities=17%  Similarity=0.215  Sum_probs=61.7

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC------------chHHH
Q 029836           18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP------------ALPLL   84 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d------------~~~~l   84 (187)
                      .++.+++-+|+|. |..+..+++.+  +..|+.+|.+++.++.+++    .|.. .+++-..+            +.++.
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~----lGa~-~v~v~~~e~g~~~~gYa~~~s~~~~  234 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS----MGAE-FLELDFKEEGGSGDGYAKVMSEEFI  234 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCe-EEeccccccccccccceeecCHHHH
Confidence            3568999999974 45666677766  4679999999987766654    3331 11111000            11111


Q ss_pred             H---HHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           85 D---QLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        85 ~---~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      .   ....+.  -..+|+||.-..   .....-..++..+.+|+|++++=-.+..+|
T Consensus       235 ~~~~~~~~e~--~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GG  289 (511)
T TIGR00561       235 AAEMELFAAQ--AKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGG  289 (511)
T ss_pred             HHHHHHHHHH--hCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCC
Confidence            1   111100  246899975542   222233567778999999998743333333

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=94.95  E-value=1.2  Score=36.49  Aligned_cols=122  Identities=18%  Similarity=0.195  Sum_probs=77.1

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDI-TKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~-~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|....+=+.++.+.....++-..+|.+.++..+...++++.+++..+. -....+..++.++..|.  ++.++..+..+
T Consensus        54 nPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv--~v~~~d~~d~~  131 (386)
T PF01053_consen   54 NPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGV--EVTFVDPTDLE  131 (386)
T ss_dssp             -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTS--EEEEESTTSHH
T ss_pred             cccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCc--EEEEeCchhHH
Confidence            5677777777888888889999999999887777766766677777664 33445566666777665  56666554344


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCe--EEEEeCcC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGG--VIGYDNTL  132 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG--~lv~~~~~  132 (187)
                      .+....     .+.-.+||+..+  +.-....++.+.++.++.|  .+++||+.
T Consensus       132 ~l~~~l-----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~  180 (386)
T PF01053_consen  132 ALEAAL-----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTF  180 (386)
T ss_dssp             HHHHHH-----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTT
T ss_pred             HHHhhc-----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccc
Confidence            444433     457899999865  3333344555555555544  66667764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=94.94  E-value=0.65  Score=36.47  Aligned_cols=98  Identities=10%  Similarity=0.005  Sum_probs=60.0

Q ss_pred             hcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIG--VFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG--~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..++.+||-.|  .+.|..+..+++..  +.++++++.+++..+.+++    .|. +.  ++.....++...+....  .
T Consensus       141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga-~~--vi~~~~~~~~~~v~~~~--~  209 (329)
T cd08294         141 PKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGF-DA--VFNYKTVSLEEALKEAA--P  209 (329)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCC-CE--EEeCCCccHHHHHHHHC--C
Confidence            44567898887  45666777788875  4689999988877666544    454 22  22222122222221111  3


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+|+|+- ..-   ...++..++.|+++|.++.-
T Consensus       210 ~gvd~vld-~~g---~~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         210 DGIDCYFD-NVG---GEFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             CCcEEEEE-CCC---HHHHHHHHHhhccCCEEEEE
Confidence            46898883 221   24567888999999998753

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=94.89  E-value=0.54  Score=37.75  Aligned_cols=103  Identities=18%  Similarity=0.132  Sum_probs=59.2

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+.++||-.|+| .|..+..+++..+ ..+|++++.+++..+.+++    .|...-+.....+..+.+....    ...
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~~~  244 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT----GGF  244 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh----CCC
Confidence            3456799988864 2445556677653 2369999999887776643    4431111111222222222221    023


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|+|+- ..  .....+..+.+.+++||.+++-..
T Consensus       245 g~d~vid-~~--g~~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       245 GADVVID-AV--GRPETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCCEEEE-CC--CCHHHHHHHHHHhccCCEEEEECC
Confidence            6898873 32  113456677889999999987554

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=94.79  E-value=0.41  Score=38.29  Aligned_cols=106  Identities=15%  Similarity=0.119  Sum_probs=59.3

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .+..+||-+|+|. |..+..+++..  +.++++++.+++..+.+++    .|...-+.....+..++.....+.. ....
T Consensus       165 ~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t-~~~g  237 (349)
T TIGR03201       165 KKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFA-KARG  237 (349)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhc-ccCC
Confidence            4567999999853 55666677765  3589999999988776654    3431111111111122222221110 0124


Q ss_pred             eeE---EEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           97 FDF---VFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        97 ~D~---v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|.   +++|..  .....+..+.+.|++||.+++-...
T Consensus       238 ~d~~~d~v~d~~--g~~~~~~~~~~~l~~~G~iv~~G~~  274 (349)
T TIGR03201       238 LRSTGWKIFECS--GSKPGQESALSLLSHGGTLVVVGYT  274 (349)
T ss_pred             CCCCcCEEEECC--CChHHHHHHHHHHhcCCeEEEECcC
Confidence            551   344442  2245666778899999999875543

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=94.78  E-value=0.87  Score=35.89  Aligned_cols=98  Identities=14%  Similarity=0.074  Sum_probs=59.6

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-CchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~   93 (187)
                      ..+..+||-.|.  +.|..+..+++..  +.++++++.+++..+.++    +.|...-+..... +..+......     
T Consensus       136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~~-----  204 (325)
T TIGR02825       136 VKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLK----KLGFDVAFNYKTVKSLEETLKKAS-----  204 (325)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HcCCCEEEeccccccHHHHHHHhC-----
Confidence            445679998884  5677777888875  468999998887766554    3454111111111 1222222221     


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+.+|+|+- ..-   ...++..++.|+++|.++.-
T Consensus       205 ~~gvdvv~d-~~G---~~~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       205 PDGYDCYFD-NVG---GEFSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             CCCeEEEEE-CCC---HHHHHHHHHHhCcCcEEEEe
Confidence            346898883 321   23457788999999999864

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.72  E-value=0.63  Score=37.87  Aligned_cols=104  Identities=18%  Similarity=0.108  Sum_probs=58.7

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ++.+|+-+|+| .|..+...+..+  +.+|+.+|.+++..+.+...+   +.  .+.....+. +.+...      -..+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~-~~l~~~------l~~a  231 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNA-YEIEDA------VKRA  231 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCH-HHHHHH------HccC
Confidence            56789999887 555666666665  358999999987665544322   11  122222222 223333      2467


Q ss_pred             eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCcc
Q 029836           98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGGS  136 (187)
Q Consensus        98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~  136 (187)
                      |+|+....   .....-+-+.....+++|++++--.+..+|.
T Consensus       232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~  273 (370)
T TIGR00518       232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGC  273 (370)
T ss_pred             CEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCC
Confidence            99997542   1111112355667789998876544444444

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=94.70  E-value=0.7  Score=36.90  Aligned_cols=100  Identities=18%  Similarity=0.218  Sum_probs=62.3

Q ss_pred             hcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIGVF--TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g--~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..+.++||-.|..  .|..+++|++++.  ..++++-.+++..+.    .++.|-..-+.+...|..+.+.++..    .
T Consensus       140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~----~~~lGAd~vi~y~~~~~~~~v~~~t~----g  209 (326)
T COG0604         140 LKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLEL----LKELGADHVINYREEDFVEQVRELTG----G  209 (326)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHH----HHhcCCCEEEcCCcccHHHHHHHHcC----C
Confidence            4567899999844  4557778888874  366666666654443    44455433444455555554444421    2


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+|+|+---    -...+....+.|+++|.++.=.
T Consensus       210 ~gvDvv~D~v----G~~~~~~~l~~l~~~G~lv~ig  241 (326)
T COG0604         210 KGVDVVLDTV----GGDTFAASLAALAPGGRLVSIG  241 (326)
T ss_pred             CCceEEEECC----CHHHHHHHHHHhccCCEEEEEe
Confidence            3699998432    2456667788899999887633

>cd08293 PTGR2 Prostaglandin reductase

Probab=94.70  E-value=0.67  Score=36.77  Aligned_cols=94  Identities=12%  Similarity=0.083  Sum_probs=57.5

Q ss_pred             CEEEEEcc--cccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           21 KNTMEIGV--FTGYSLLATALAIPDDG-KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        21 ~~vLeiG~--g~G~~~~~l~~~~~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ++||-.|+  +.|..+..+++..  +. +|++++.+++..+.+++.   .|...-+.....+..+.+..+.     ...+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-----~~gv  225 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-----PEGV  225 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-----CCCc
Confidence            78998885  5677777888876  45 799999888766655442   3442111111122222233321     3468


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+|+- ..-.   ..+..+++.|+++|.++.
T Consensus       226 d~vid-~~g~---~~~~~~~~~l~~~G~iv~  252 (345)
T cd08293         226 DVYFD-NVGG---EISDTVISQMNENSHIIL  252 (345)
T ss_pred             eEEEE-CCCc---HHHHHHHHHhccCCEEEE
Confidence            98883 3211   235778889999999885

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PLN02740 Alcohol dehydrogenase-like

Probab=94.67  E-value=0.7  Score=37.51  Aligned_cols=103  Identities=21%  Similarity=0.301  Sum_probs=58.2

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe--CCchHHHHHHhhccc
Q 029836           16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE--GPALPLLDQLIQDEK   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~   92 (187)
                      ...+.++||-+|+| .|..+..+++..+ ..+|+++|.+++.++.+++    .|...-+....  .+..+.+..+.    
T Consensus       195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~----  265 (381)
T PLN02740        195 NVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT----  265 (381)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh----
Confidence            34456799999874 2334455666653 2379999999988777654    44321111111  01222222221    


Q ss_pred             CCCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836           93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT  131 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                       .+.+|+|+--..   ....+......+++| |.+++-..
T Consensus       266 -~~g~dvvid~~G---~~~~~~~a~~~~~~g~G~~v~~G~  301 (381)
T PLN02740        266 -GGGVDYSFECAG---NVEVLREAFLSTHDGWGLTVLLGI  301 (381)
T ss_pred             -CCCCCEEEECCC---ChHHHHHHHHhhhcCCCEEEEEcc
Confidence             236898874322   235666777788886 87776443

>PRK13699 putative methylase; Provisional

Probab=94.67  E-value=0.17  Score=38.19  Aligned_cols=56  Identities=7%  Similarity=0.078  Sum_probs=43.5

Q ss_pred             HHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc
Q 029836            9 QFFSMLLKL--INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA   67 (187)
Q Consensus         9 ~~l~~l~~~--~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~   67 (187)
                      ++++.++..  .++..|||--||+|..+....+.   +-+.+++|++++..+.+.++++..
T Consensus       151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence            456666543  35679999999999887765543   468999999999999999888764

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=94.65  E-value=0.57  Score=37.34  Aligned_cols=103  Identities=20%  Similarity=0.277  Sum_probs=58.2

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .++++||-.|+| .|..+..+++..+ ...+++++.+++..+.+++    .|...-+.....+ .+.+.....    ...
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~~----~~~  228 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVLR----ELR  228 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHhc----CCC
Confidence            356799888864 3334555666653 2347899998887766543    3431111111112 122222211    236


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|.+++|..  .....+..+.+.|++||.+++-...
T Consensus       229 ~d~~v~d~~--G~~~~~~~~~~~l~~~G~iv~~G~~  262 (347)
T PRK10309        229 FDQLILETA--GVPQTVELAIEIAGPRAQLALVGTL  262 (347)
T ss_pred             CCeEEEECC--CCHHHHHHHHHHhhcCCEEEEEccC
Confidence            785666653  2245677788999999999875543

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.46  E-value=0.83  Score=34.45  Aligned_cols=99  Identities=21%  Similarity=0.221  Sum_probs=59.8

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .+..+||..|+|. |..+..+++..  +.++++++.+++..+.+++    .+...-+.....+....+. ..    ..+.
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~~----~~~~  201 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELR-LT----GGGG  201 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHH-Hh----cCCC
Confidence            5677999999885 66677777765  4789999999877665543    2321111111111211111 11    1457


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|+++.....   ...+..+.+.|+++|.++.-.
T Consensus       202 ~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         202 ADVVIDAVGG---PETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             CCEEEECCCC---HHHHHHHHHhcccCCEEEEEc
Confidence            9999864321   145667788899999988643

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.46  E-value=0.2  Score=35.41  Aligned_cols=95  Identities=17%  Similarity=0.083  Sum_probs=57.5

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC------CCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG------VAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~------~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      +|.-+|+|.+..++...-... +.+|+....+++.++..++.-....      ++.++.+ ..|..+.+          .
T Consensus         1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----------~   68 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----------E   68 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----------T
T ss_pred             CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----------C
Confidence            356678876665544322212 4689999999877766554332111      1134433 34443333          2


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..|+|++--+...+..+++.+.+.++++-.++.
T Consensus        69 ~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   69 DADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             T-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred             cccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence            459999988878889999999999988888874

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=94.46  E-value=0.15  Score=40.24  Aligned_cols=95  Identities=18%  Similarity=0.274  Sum_probs=63.7

Q ss_pred             HHHHHHHHhhcC-CC----EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            8 AQFFSMLLKLIN-AK----NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         8 ~~~l~~l~~~~~-~~----~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      ..++..|+...+ .+    +-+|||+  |.+.++.+.... .+...+++|++......|++++.++++.+.+.+++....
T Consensus        86 ihwI~DLLss~q~~k~~i~~GiDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~  163 (419)
T KOG2912|consen   86 IHWIEDLLSSQQSDKSTIRRGIDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQ  163 (419)
T ss_pred             HHHHHHHhhcccCCCcceeeeeeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecch
Confidence            445666665443 22    2467765  677777665432 236789999999999999999999999999999888665


Q ss_pred             H-HHHHHhhcccCCCceeEEEEcCC
Q 029836           82 P-LLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        82 ~-~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      . .+.......+ +..||++.++++
T Consensus       164 ktll~d~~~~~~-e~~ydFcMcNPP  187 (419)
T KOG2912|consen  164 KTLLMDALKEES-EIIYDFCMCNPP  187 (419)
T ss_pred             hhcchhhhccCc-cceeeEEecCCc
Confidence            4 3333221111 235888887654

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=94.43  E-value=0.91  Score=30.44  Aligned_cols=96  Identities=11%  Similarity=-0.006  Sum_probs=57.3

Q ss_pred             HHHHHHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836           10 FFSMLLKLINAKNTMEIGVFTGY-SLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~-~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      +...++......+|+|+|.|.=. .+..+++.   +..++++|+++..   +       +  .-++++..|..+.--++ 
T Consensus         4 ~a~~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~~---a-------~--~g~~~v~DDitnP~~~i-   67 (129)
T COG1255           4 VAEYIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEKT---A-------P--EGLRFVVDDITNPNISI-   67 (129)
T ss_pred             HHHHHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEeccccc---C-------c--ccceEEEccCCCccHHH-
Confidence            34455667778899999987655 33334433   4789999998761   1       1  35778888776543333 


Q ss_pred             hcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEE
Q 029836           89 QDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVI  126 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~l  126 (187)
                           -...|+|+.--++.+....+-.+.+.++-.-++
T Consensus        68 -----Y~~A~lIYSiRpppEl~~~ildva~aVga~l~I  100 (129)
T COG1255          68 -----YEGADLIYSIRPPPELQSAILDVAKAVGAPLYI  100 (129)
T ss_pred             -----hhCccceeecCCCHHHHHHHHHHHHhhCCCEEE
Confidence                 356799986544444444443444444333333

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.35  E-value=0.57  Score=38.24  Aligned_cols=105  Identities=16%  Similarity=0.154  Sum_probs=61.0

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhccc-----CC
Q 029836           21 KNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEK-----YH   94 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~-----~~   94 (187)
                      .+|--|  |.|+.++.++..+.. +.+|+++|+++..++...+        .+..+..-+..+.+.....+++     +.
T Consensus        10 ~~I~Vi--GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~--------G~~~i~e~~~~~~v~~~v~~g~lraTtd~   79 (436)
T COG0677          10 ATIGVI--GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR--------GESYIEEPDLDEVVKEAVESGKLRATTDP   79 (436)
T ss_pred             eEEEEE--ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC--------CcceeecCcHHHHHHHHHhcCCceEecCh
Confidence            345555  457777776655543 4789999999987765432        2333443344333443332221     01


Q ss_pred             ---CceeEEEEcCC------Cc----ccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           95 ---GTFDFVFVDAD------KD----NYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        95 ---~~~D~v~~d~~------~~----~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                         ..-|++++.-+      ++    ......+.+.+.|++|-.+++..+.+.|
T Consensus        80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PG  133 (436)
T COG0677          80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPG  133 (436)
T ss_pred             hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCC
Confidence               14577665432      11    1244556677899999999998777665

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=94.35  E-value=1.2  Score=35.41  Aligned_cols=100  Identities=11%  Similarity=0.028  Sum_probs=61.0

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-CchHHHHHHhhccc
Q 029836           16 KLINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDEK   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~   92 (187)
                      ...++++||-.|+  +.|..+..+++..  +.+++++..+++..+.+++.   .|...-+..... +..+.+....    
T Consensus       148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~----  218 (338)
T cd08295         148 KPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF----  218 (338)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC----
Confidence            3456789999885  5666777788875  46899988888776665542   343211111111 2222222221    


Q ss_pred             CCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       ...+|+|+- ..-   ...+..+.+.|+++|.++.-
T Consensus       219 -~~gvd~v~d-~~g---~~~~~~~~~~l~~~G~iv~~  250 (338)
T cd08295         219 -PNGIDIYFD-NVG---GKMLDAVLLNMNLHGRIAAC  250 (338)
T ss_pred             -CCCcEEEEE-CCC---HHHHHHHHHHhccCcEEEEe
Confidence             346898883 321   24577888999999998853

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK09028 cystathionine beta-lyase; Provisional

Probab=94.34  E-value=2.5  Score=34.78  Aligned_cols=124  Identities=15%  Similarity=0.081  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-hHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      |....+=+.++.+.....++-..+|...+...+...+.++.+|+..+..- .....+...++..|.  ++.++..+..+.
T Consensus        61 pt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi--~v~~v~~~~~e~  138 (394)
T PRK09028         61 PTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGI--ETTYYDPMIGEG  138 (394)
T ss_pred             chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcce--EEEEECCCCHHH
Confidence            44445555566555556777777777665555444455567888887654 333444455555554  445554333333


Q ss_pred             HHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCCCc
Q 029836           84 LDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLWGG  135 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~~  135 (187)
                      +....     ...-.+|++..+  +......++.+.++.+. |.++++|++...+
T Consensus       139 l~~~l-----~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p  188 (394)
T PRK09028        139 IRELI-----RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASP  188 (394)
T ss_pred             HHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence            44332     334578888754  33334556666666665 4566677776544

>PLN02827 Alcohol dehydrogenase-like

Probab=94.26  E-value=0.72  Score=37.47  Aligned_cols=102  Identities=19%  Similarity=0.237  Sum_probs=57.4

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe--CCchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE--GPALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~   93 (187)
                      ..+.++||-.|+| .|..+..+++..+ ...+++++.+++..+.+++    .|...-+....  .+..+.+..+.     
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~-----  260 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT-----  260 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh-----
Confidence            4457799988864 3334455666653 2468899988887766543    45411111111  01122222221     


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                      .+.+|+|+--.   .....+..+.+.+++| |.+++-..
T Consensus       261 ~~g~d~vid~~---G~~~~~~~~l~~l~~g~G~iv~~G~  296 (378)
T PLN02827        261 GGGADYSFECV---GDTGIATTALQSCSDGWGLTVTLGV  296 (378)
T ss_pred             CCCCCEEEECC---CChHHHHHHHHhhccCCCEEEEECC
Confidence            23689887422   2234566778889998 99986443

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=94.26  E-value=0.25  Score=41.10  Aligned_cols=95  Identities=12%  Similarity=0.012  Sum_probs=63.4

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-HHHHhhcccCCCceeEE
Q 029836           22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~~~D~v  100 (187)
                      +++.+|||.--....+-+..  -..++.+|+|+-.++.....-.  ...+..++..+|.... ++        +++||+|
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~~~d~~~l~fe--------dESFdiV  118 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNA--KERPEMQMVEMDMDQLVFE--------DESFDIV  118 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccc--cCCcceEEEEecchhccCC--------CcceeEE
Confidence            79999998876666555432  3679999999988775544332  1224567777777543 22        5788888


Q ss_pred             EEcCC-------------CcccHHHHHHHHhcccCCeEEEE
Q 029836          101 FVDAD-------------KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus       101 ~~d~~-------------~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +.=+.             .......+..+.++|++||.++.
T Consensus       119 IdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s  159 (482)
T KOG2352|consen  119 IDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS  159 (482)
T ss_pred             EecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence            64322             11334567788899999998654

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=93.98  E-value=0.35  Score=30.87  Aligned_cols=85  Identities=11%  Similarity=0.037  Sum_probs=52.1

Q ss_pred             EEEEcccccHHHHHHHhhCC-CC---CEEEEE-eCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           23 TMEIGVFTGYSLLATALAIP-DD---GKILAL-DITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        23 vLeiG~g~G~~~~~l~~~~~-~~---~~v~~v-d~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      |--||+  |..+..++..+- .+   .+++.+ +.+++..+...+.+       .+.+...+..+.+.          ..
T Consensus         2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~~----------~a   62 (96)
T PF03807_consen    2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY-------GVQATADDNEEAAQ----------EA   62 (96)
T ss_dssp             EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC-------TTEEESEEHHHHHH----------HT
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh-------ccccccCChHHhhc----------cC
Confidence            445655  555555544331 12   688844 99998776554433       23444434544443          35


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |+||+--++....+.++.+ ..+.++..++
T Consensus        63 dvvilav~p~~~~~v~~~i-~~~~~~~~vi   91 (96)
T PF03807_consen   63 DVVILAVKPQQLPEVLSEI-PHLLKGKLVI   91 (96)
T ss_dssp             SEEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred             CEEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence            9999988888899999888 6677777765

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.82  E-value=1.4  Score=32.56  Aligned_cols=81  Identities=15%  Similarity=0.111  Sum_probs=45.4

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEe
Q 029836           18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFRE   77 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~   77 (187)
                      .+..+|+-+|||. |......+...+ -++++.+|.+.                   ...+.+.+.+++.+-.-+++.+.
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~   97 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK   97 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence            4667899999973 443333333322 46899999872                   34455566666654323444444


Q ss_pred             CCchH-HHHHHhhcccCCCceeEEEEcCC
Q 029836           78 GPALP-LLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        78 ~d~~~-~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      ..... .+..+      -..+|+|+.-.+
T Consensus        98 ~~i~~~~~~~~------~~~~D~Vi~~~d  120 (202)
T TIGR02356        98 ERVTAENLELL------INNVDLVLDCTD  120 (202)
T ss_pred             hcCCHHHHHHH------HhCCCEEEECCC
Confidence            33322 22333      247899886544

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=93.78  E-value=3.1  Score=33.91  Aligned_cols=126  Identities=14%  Similarity=0.068  Sum_probs=70.9

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchH-HHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEH-YEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~-~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|....+=+.++.....+.++-..+|++.....+...+.++.+|+..+..-.. ...+...++..|.  +++++..+..+
T Consensus        49 nPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi--~v~~~d~~~~e  126 (377)
T TIGR01324        49 TLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGV--DITYYDPLIGE  126 (377)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCc--EEEEECCCCHH
Confidence            35555666666666667788878777776665554445556778776655432 2333344455554  34444322223


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCCCcc
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLWGGS  136 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~~~  136 (187)
                      .+....     .....+|++...  .......++.+.++.++ |.++++|++...+.
T Consensus       127 ~l~~~i-----~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~  178 (377)
T TIGR01324       127 DIATLI-----QPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGL  178 (377)
T ss_pred             HHHHhc-----CCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence            333322     345678887654  33344556666665555 55677788765443

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=93.74  E-value=0.99  Score=35.77  Aligned_cols=100  Identities=15%  Similarity=0.173  Sum_probs=56.6

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGK-ILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~-v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..+.++||-+|+| .|..+..+++..  +.+ +++++.+++..+.+++    .|...-+.....+ .+.+.....    .
T Consensus       161 ~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~~----~  229 (339)
T cd08239         161 VSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELTS----G  229 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHhC----C
Confidence            3456789888764 333445566665  345 9999998887766543    3431111111112 222222210    2


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+|+||--..   ....+....+.|+++|.+++-.
T Consensus       230 ~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         230 AGADVAIECSG---NTAARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             CCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEEc
Confidence            36998884322   2344566778999999998643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.73  E-value=1.9  Score=33.37  Aligned_cols=100  Identities=16%  Similarity=0.141  Sum_probs=57.9

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      +.++||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++    .|.. . .+-..+..+.+..+.    ....+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~-~-~i~~~~~~~~~~~~~----~~~g~  188 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGAT-A-LAEPEVLAERQGGLQ----NGRGV  188 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCc-E-ecCchhhHHHHHHHh----CCCCC
Confidence            56789988874 3445556676653 2358999988887766654    3431 1 111111112222221    02468


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |+++--..   ....++.+.+.++++|.++.-...
T Consensus       189 d~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~~  220 (280)
T TIGR03366       189 DVALEFSG---ATAAVRACLESLDVGGTAVLAGSV  220 (280)
T ss_pred             CEEEECCC---ChHHHHHHHHHhcCCCEEEEeccC
Confidence            98874321   245677788899999999875543

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.72  E-value=1.4  Score=36.49  Aligned_cols=88  Identities=10%  Similarity=0.049  Sum_probs=56.0

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ...++|+-+|+|. |......++.+  +.+|+.+|.++.....|++    .|.    +..  +..    ..      -..
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~----e~------v~~  257 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TME----EA------VKE  257 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHH----HH------HcC
Confidence            3578999999974 54555556655  4689999999987776654    333    111  111    11      124


Q ss_pred             eeEEEEcCCCcccHHHHHHH-HhcccCCeEEEEeC
Q 029836           97 FDFVFVDADKDNYVNYHKRL-IELVKVGGVIGYDN  130 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~-~~~L~~gG~lv~~~  130 (187)
                      .|+|+.-.   .....+... .+.+++||+++.-.
T Consensus       258 aDVVI~at---G~~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         258 GDIFVTTT---GNKDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CCEEEECC---CCHHHHHHHHHhcCCCCcEEEEeC
Confidence            69888543   234455544 78999999997643

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=93.63  E-value=0.78  Score=36.08  Aligned_cols=69  Identities=12%  Similarity=-0.004  Sum_probs=49.7

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEE
Q 029836           22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVF  101 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~  101 (187)
                      +++|+-||.|....-+..+.  -..+.++|+++.+.+.-+.|+.        ....+|..+.-....     .+.+|+++
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l-----~~~~D~l~   66 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL-----PKDVDLLI   66 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH-----HHT-SEEE
T ss_pred             cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc-----cccceEEE
Confidence            68999999999999888762  2468999999999988888883        677788876543321     11589998


Q ss_pred             EcCC
Q 029836          102 VDAD  105 (187)
Q Consensus       102 ~d~~  105 (187)
                      ...+
T Consensus        67 ggpP   70 (335)
T PF00145_consen   67 GGPP   70 (335)
T ss_dssp             EE--
T ss_pred             eccC
Confidence            8755

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PRK05967 cystathionine beta-lyase; Provisional

Probab=93.63  E-value=3.5  Score=33.95  Aligned_cols=122  Identities=12%  Similarity=0.102  Sum_probs=72.3

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHH-HHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHY-EKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~-~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|....+-+.++.+......+-+.+|.+.+...+...+.++.+|+..+..-... ..+++.++..|.  +++++..+..+
T Consensus        63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e  140 (395)
T PRK05967         63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGA  140 (395)
T ss_pred             ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHH
Confidence            455555555555655566677788887776666655566667888877654433 334455666665  56666544333


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCe-EEEEeCcC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGG-VIGYDNTL  132 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~  132 (187)
                      .+....     .+.-.+|++..+  +.-....++.+.++.++.| ++++|++.
T Consensus       141 ~l~~al-----~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~  188 (395)
T PRK05967        141 GIAKLM-----RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW  188 (395)
T ss_pred             HHHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence            344432     344678888754  3334555666666666554 56666664

>PRK05939 hypothetical protein; Provisional

Probab=93.58  E-value=3.4  Score=33.98  Aligned_cols=122  Identities=13%  Similarity=0.115  Sum_probs=68.2

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +|.+..+=+.++.....+..+-+.+|...+...+...+.++.+|+..+..-.........++..|.  ++.++..+-.+.
T Consensus        46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~--~v~~v~~~d~e~  123 (397)
T PRK05939         46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGV--EVTMVDATDVQN  123 (397)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCC--EEEEECCCCHHH
Confidence            466777777788877887888888887666655544455566787766543222121233555554  455554322233


Q ss_pred             HHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTL  132 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~  132 (187)
                      +....     .+.-.+|++...  +......++.+.++.+. |.++++|++.
T Consensus       124 l~~~l-----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~  170 (397)
T PRK05939        124 VAAAI-----RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM  170 (397)
T ss_pred             HHHhC-----CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence            33332     344567877643  22333445566665555 4456666654

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=93.55  E-value=1.5  Score=35.37  Aligned_cols=102  Identities=19%  Similarity=0.274  Sum_probs=58.2

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe--CCchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE--GPALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~   93 (187)
                      ..+.++||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++    .|...-+....  .+..+.+..+.     
T Consensus       183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-----  252 (368)
T TIGR02818       183 VEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT-----  252 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh-----
Confidence            3456799998874 2445566777653 2379999999988776644    34321111111  01112222221     


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                      .+.+|+++--..   ....+..+.+.+++| |.++.-..
T Consensus       253 ~~g~d~vid~~G---~~~~~~~~~~~~~~~~G~~v~~g~  288 (368)
T TIGR02818       253 DGGVDYSFECIG---NVNVMRAALECCHKGWGESIIIGV  288 (368)
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHHhhcCCCeEEEEec
Confidence            236898874321   244567778889886 88775443

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.52  E-value=1.2  Score=35.18  Aligned_cols=108  Identities=12%  Similarity=0.123  Sum_probs=69.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC--CceEEEeCCch-H-HHHHHhhcccCCC
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA--HKIDFREGPAL-P-LLDQLIQDEKYHG   95 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~-~-~l~~~~~~~~~~~   95 (187)
                      ...|+.+|||.-  +...=-..+.+.++.-+|. |+.++.-++.++..+..  ...+.+..|.. + +...+.+.+.+..
T Consensus        93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            679999999654  3332111122467777776 67777777888877642  36788888887 3 4455554332233


Q ss_pred             ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..=+++.-+-     .+....+|+.+..+..+|..++++-
T Consensus       170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~  209 (297)
T COG3315         170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY  209 (297)
T ss_pred             CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence            3334444432     4567789999999998888888764

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.42  E-value=1.6  Score=34.94  Aligned_cols=96  Identities=11%  Similarity=0.093  Sum_probs=56.5

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeC---CchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccC
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDI---TKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~---~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      .++.+||-+|+| .|..+..+++..  +.++++++.   +++..+.++    +.|.. .+.....+..+    .. .   
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~----~~Ga~-~v~~~~~~~~~----~~-~---  235 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVE----ELGAT-YVNSSKTPVAE----VK-L---  235 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHH----HcCCE-EecCCccchhh----hh-h---
Confidence            356799999875 345666677765  358999987   455555443    34441 12111111111    10 1   


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+.+|+||--..   ....+....+.|++||.+++-..
T Consensus       236 ~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         236 VGEFDLIIEATG---VPPLAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             cCCCCEEEECcC---CHHHHHHHHHHccCCcEEEEEec
Confidence            346898875332   23467788899999999886544

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=93.41  E-value=2.2  Score=35.12  Aligned_cols=123  Identities=15%  Similarity=0.145  Sum_probs=70.0

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDI-TKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~-~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|...++-+.++.....+..+-.++|.......+...+.++.+|+..+. .........+.++..|.  ++.++..+..+
T Consensus        69 ~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~--~v~~vd~~d~~  146 (403)
T PRK07810         69 NPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV--ETVFVDGEDLS  146 (403)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc--EEEEECCCCHH
Confidence            4666777788888888889999999888766655444454567766553 22334444555555554  45555443223


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  133 (187)
                      .+....     ...-.+|++..+  +......++.+.++.++ |-.+++|++..
T Consensus       147 ~l~~ai-----~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a  195 (403)
T PRK07810        147 QWEEAL-----SVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFA  195 (403)
T ss_pred             HHHHhc-----CcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence            333332     234578887543  22222224444444444 45677777754

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.40  E-value=0.49  Score=38.67  Aligned_cols=83  Identities=24%  Similarity=0.218  Sum_probs=51.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCCc
Q 029836           21 KNTMEIGVFTGYSLLATALAIPD--DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHGT   96 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~--~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~   96 (187)
                      ++||-|||  |..+...+..+..  +.+|+..|.+++..+.+.....     .+++..+-|+.+.  +..+.      ..
T Consensus         2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li------~~   68 (389)
T COG1748           2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALI------KD   68 (389)
T ss_pred             CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHH------hc
Confidence            57999999  5555555444322  3799999999888776655432     3777887777653  33332      34


Q ss_pred             eeEEEEcCCCcccHHHHHHH
Q 029836           97 FDFVFVDADKDNYVNYHKRL  116 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~  116 (187)
                      +|+|+.-.+......+++.|
T Consensus        69 ~d~VIn~~p~~~~~~i~ka~   88 (389)
T COG1748          69 FDLVINAAPPFVDLTILKAC   88 (389)
T ss_pred             CCEEEEeCCchhhHHHHHHH
Confidence            59998766533333444433

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=93.24  E-value=1.2  Score=35.66  Aligned_cols=98  Identities=14%  Similarity=0.017  Sum_probs=65.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC-cee
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG-TFD   98 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~-~~D   98 (187)
                      ..+++|+-||.|...+-+..+.  -.-+.++|+++.+++.-+.|+..      ..+...|..+......     .. .+|
T Consensus         3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~D   69 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL-----RKSDVD   69 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc-----cccCCC
Confidence            4589999999999988877652  24679999999998887777742      4556666665443321     12 689


Q ss_pred             EEEEcCCCcc----------------cHHHHHHHHhcccCCeEEEEeCc
Q 029836           99 FVFVDADKDN----------------YVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        99 ~v~~d~~~~~----------------~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +++...+.+.                ..-.+..+...++| -++++.|+
T Consensus        70 vligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV  117 (328)
T COG0270          70 VLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENV  117 (328)
T ss_pred             EEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecC
Confidence            9987755221                12233445567778 77777776

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=93.21  E-value=1.9  Score=34.31  Aligned_cols=103  Identities=18%  Similarity=0.251  Sum_probs=60.1

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+.++||-.|+| .|..+..+++..+ ...+++++.+++..+.+++    .|...-+.....+..+.+..+..    ..
T Consensus       164 ~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~----~~  234 (351)
T cd08285         164 IKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTG----GK  234 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhC----CC
Confidence            4456788888765 4455666777653 3469999999877766553    44321111111222222222210    24


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|+++-...   ....+..+++.|+++|.++.-+.
T Consensus       235 ~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~g~  267 (351)
T cd08285         235 GVDAVIIAGG---GQDTFEQALKVLKPGGTISNVNY  267 (351)
T ss_pred             CCcEEEECCC---CHHHHHHHHHHhhcCCEEEEecc
Confidence            6898874322   13567788899999998886443

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK06234 methionine gamma-lyase; Provisional

Probab=93.16  E-value=3.3  Score=33.99  Aligned_cols=123  Identities=14%  Similarity=0.109  Sum_probs=66.3

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeC-Cch
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREG-PAL   81 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~-d~~   81 (187)
                      +|...++-+.++.....+.++-+++|++.+...+...+.++.+|+..+..-. ........++..|.  ++.++.. |..
T Consensus        63 ~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~vd~~d~e  140 (400)
T PRK06234         63 NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV--EVTFVDTSNLE  140 (400)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe--EEEEECCCCHH
Confidence            4566677777777777777888888877665555444554567766554222 22223333444443  4444433 333


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC---CeEEEEeCcCCC
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV---GGVIGYDNTLWG  134 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~---gG~lv~~~~~~~  134 (187)
                      ++...+      ...-.+|++..+  +.....-++.+.++.+.   |-++++|+++..
T Consensus       141 ~l~~~i------~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~  192 (400)
T PRK06234        141 EVRNAL------KANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCT  192 (400)
T ss_pred             HHHHHh------ccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCc
Confidence            333323      234578886643  22112223444444443   778888887643

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=93.16  E-value=0.84  Score=33.56  Aligned_cols=93  Identities=16%  Similarity=0.175  Sum_probs=52.7

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhc
Q 029836           11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD   90 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~   90 (187)
                      +........++++|-+|++.  ++.+.+..+....+|+.+|++|.+...         ++++++|..+  ..+   .   
T Consensus        36 i~~~~~~~E~~~vli~G~Yl--tG~~~a~~Ls~~~~vtv~Di~p~~r~~---------lp~~v~Fr~~--~~~---~---   96 (254)
T COG4017          36 IRDFLEGEEFKEVLIFGVYL--TGNYTAQMLSKADKVTVVDIHPFMRGF---------LPNNVKFRNL--LKF---I---   96 (254)
T ss_pred             hhhhhcccCcceEEEEEeee--hhHHHHHHhcccceEEEecCCHHHHhc---------CCCCccHhhh--cCC---C---
Confidence            33333455788999999863  334444555446899999999865322         3356666543  111   1   


Q ss_pred             ccCCCceeEEEEcCC-CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           91 EKYHGTFDFVFVDAD-KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~-~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                         .+.+|+|+=--. -.-.++++    +.++|+-.+ +.|
T Consensus        97 ---~G~~DlivDlTGlGG~~Pe~L----~~fnp~vfi-VEd  129 (254)
T COG4017          97 ---RGEVDLIVDLTGLGGIEPEFL----AKFNPKVFI-VED  129 (254)
T ss_pred             ---CCceeEEEeccccCCCCHHHH----hccCCceEE-EEC
Confidence               578899873222 12223433    345565544 444

>PRK06940 short chain dehydrogenase; Provisional

Probab=93.14  E-value=1.8  Score=33.41  Aligned_cols=81  Identities=20%  Similarity=0.191  Sum_probs=49.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCCcee
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHGTFD   98 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~~D   98 (187)
                      +.+|-.|+  |.++..+++.+..+.+|+.++.+++.++.+.+.++..+  .++.++..|..+.  +..+.+.....+.+|
T Consensus         3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            35666664  56888888877656899999998776665555555433  3677777766432  222221110135789


Q ss_pred             EEEEcCC
Q 029836           99 FVFVDAD  105 (187)
Q Consensus        99 ~v~~d~~  105 (187)
                      .++....
T Consensus        79 ~li~nAG   85 (275)
T PRK06940         79 GLVHTAG   85 (275)
T ss_pred             EEEECCC
Confidence            9987653

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=93.04  E-value=4.1  Score=33.35  Aligned_cols=123  Identities=15%  Similarity=0.101  Sum_probs=65.4

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeC-Cch
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREG-PAL   81 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~-d~~   81 (187)
                      +|....+-+.++.......++-.++|...+...+...+.++.+|+..+..-. ............+.  ++.++.. |..
T Consensus        51 ~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi--~v~~vd~~d~e  128 (386)
T PRK08045         51 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY--RVLFVDQGDEQ  128 (386)
T ss_pred             CccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe--EEEEeCCCCHH
Confidence            4566777777877766667777777776665555444555667777766544 23333333333222  3444332 232


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCCC
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLWG  134 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~  134 (187)
                      + +....     ....++|++..+  +.....-++.+.++.+. |.++++|++...
T Consensus       129 ~-l~~~l-----~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~  178 (386)
T PRK08045        129 A-LRAAL-----AEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLS  178 (386)
T ss_pred             H-HHHhc-----ccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCc
Confidence            2 33322     235578887644  21111113333333333 667788888643

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=93.01  E-value=0.71  Score=36.53  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=26.0

Q ss_pred             CceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEE
Q 029836           95 GTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        95 ~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +.||+|+..-.   .....++++.+.+.|+|||+-|=
T Consensus       258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiN  294 (369)
T KOG2798|consen  258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWIN  294 (369)
T ss_pred             CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEe
Confidence            46898854321   45678899999999999998873

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=93.01  E-value=2.4  Score=34.20  Aligned_cols=102  Identities=18%  Similarity=0.288  Sum_probs=58.1

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC--CchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG--PALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~~l~~~~~~~~~   93 (187)
                      ..++++||-+|+| .|..+..+++..+ ..++++++.+++..+.+++    .|...-+.....  +..+.+..+.     
T Consensus       184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~-----  253 (368)
T cd08300         184 VEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT-----  253 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh-----
Confidence            4457889988864 3345555676653 2379999999988776643    443211111111  1222222221     


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                      .+.+|+|+--..   ....+..+.+.++++ |.++.-..
T Consensus       254 ~~g~d~vid~~g---~~~~~~~a~~~l~~~~G~~v~~g~  289 (368)
T cd08300         254 DGGVDYTFECIG---NVKVMRAALEACHKGWGTSVIIGV  289 (368)
T ss_pred             CCCCcEEEECCC---ChHHHHHHHHhhccCCCeEEEEcc
Confidence            346898884221   234667778889887 87776443

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.00  E-value=2.1  Score=34.42  Aligned_cols=80  Identities=15%  Similarity=0.087  Sum_probs=47.0

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc---------------------hHHHHHHHHHHHcCCCCceEEE
Q 029836           19 NAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITK---------------------EHYEKGLPIIQKAGVAHKIDFR   76 (187)
Q Consensus        19 ~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~---------------------~~~~~a~~~~~~~~~~~~i~~~   76 (187)
                      +..+|+-||||. |......+...+ -++++.+|.+.                     ...+.+++.+++.+-.-+++.+
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            567899999973 333333222222 36899999874                     2345566777766543455556


Q ss_pred             eCCch-HHHHHHhhcccCCCceeEEEEcCC
Q 029836           77 EGPAL-PLLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        77 ~~d~~-~~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      ..+.. +.+..+      -..+|+|+.-.+
T Consensus       102 ~~~~~~~~~~~~------~~~~DlVid~~D  125 (338)
T PRK12475        102 VTDVTVEELEEL------VKEVDLIIDATD  125 (338)
T ss_pred             eccCCHHHHHHH------hcCCCEEEEcCC
Confidence            55543 233333      346899886554

>PRK08064 cystathionine beta-lyase; Provisional

Probab=92.99  E-value=3.2  Score=33.98  Aligned_cols=122  Identities=15%  Similarity=0.163  Sum_probs=65.1

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|...++-+.++.....+..+-+++|...+...+. .+.++.+|+..+..-. ......+.++..|.  ++.++..+..+
T Consensus        53 ~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~  129 (390)
T PRK08064         53 NPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGI--EHTFVDMTNLE  129 (390)
T ss_pred             ChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCC--EEEEECCCCHH
Confidence            56677777778777666566667777665544443 4444567877665332 33344444555554  45555433223


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  133 (187)
                      .+....     ...-.+|++..+  +......++.+.++.+. |.++++|++..
T Consensus       130 ~l~~~l-----~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~  178 (390)
T PRK08064        130 EVAQNI-----KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFL  178 (390)
T ss_pred             HHHHhc-----CCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCC
Confidence            333221     334578887654  22222223344443443 55677777643

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=92.97  E-value=0.095  Score=34.75  Aligned_cols=39  Identities=15%  Similarity=0.514  Sum_probs=27.7

Q ss_pred             ceeEEEEcCC---------CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           96 TFDFVFVDAD---------KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        96 ~~D~v~~d~~---------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      +||+|++-..         .+....+|+.+..+|+|||++|+.---|.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~   48 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWK   48 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HH
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcH
Confidence            4888887543         24467899999999999999998655553

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.93  E-value=0.79  Score=36.05  Aligned_cols=88  Identities=9%  Similarity=0.021  Sum_probs=53.6

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      +.+++|-+|+| .|..+..+++..+ ...++++|.+++.++.+.+.          .++  +..+.   .      ...+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----------~~i--~~~~~---~------~~g~  201 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----------EVL--DPEKD---P------RRDY  201 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----------ccc--Chhhc---c------CCCC
Confidence            45689888865 4556666777654 34577788887766555431          011  11110   1      3468


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |+||-..   .....++.+.+.|+++|.+++-..
T Consensus       202 Dvvid~~---G~~~~~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       202 RAIYDAS---GDPSLIDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             CEEEECC---CCHHHHHHHHHhhhcCcEEEEEee
Confidence            9887322   223456778889999999986443

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=92.88  E-value=1.1  Score=36.54  Aligned_cols=113  Identities=19%  Similarity=0.161  Sum_probs=72.1

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHH-------HHHHHcCC-CCceEEEeCCchHH-
Q 029836           13 MLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGL-------PIIQKAGV-AHKIDFREGPALPL-   83 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~-------~~~~~~~~-~~~i~~~~~d~~~~-   83 (187)
                      .-+...+.....|+|+|.|......+.... ...-+|+|+....-..+.       +..+-.|- ...++.++++..+. 
T Consensus       186 dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~  264 (419)
T KOG3924|consen  186 DELKLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPK  264 (419)
T ss_pred             HHhccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHH
Confidence            334566778999999999999888776543 456677887654433332       23333444 35678888887652 


Q ss_pred             -HHHHhhcccCCCceeEEEEcCCCcc--cHHHHHHHHhcccCCeEEEEeCcC
Q 029836           84 -LDQLIQDEKYHGTFDFVFVDADKDN--YVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        84 -l~~~~~~~~~~~~~D~v~~d~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                       ...+      ....++||+....-+  ..--.+++...+++|..++-.+-+
T Consensus       265 ~v~eI------~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L  310 (419)
T KOG3924|consen  265 RVTEI------QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPL  310 (419)
T ss_pred             HHHHH------hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccccc
Confidence             3333      346789998765322  222334777888999999854444

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=92.82  E-value=0.25  Score=37.08  Aligned_cols=61  Identities=16%  Similarity=0.108  Sum_probs=46.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      ...-|.+||.|.|.++..++.+-  ..++..||.++..+.-.+-.-+..  +.+..++++|+..+
T Consensus        50 ~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR~  110 (326)
T KOG0821|consen   50 TNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLRF  110 (326)
T ss_pred             ccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcC--CcceEEecccccee
Confidence            34579999999999999999763  478999999998886655433322  25788888888653

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=92.77  E-value=3.3  Score=33.35  Aligned_cols=95  Identities=18%  Similarity=0.193  Sum_probs=53.9

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      +.++||-.|+| .|..+..+++..  +.++++++.+++....+   .++.|..   .++.....+.+...      .+.+
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~------~~~~  248 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAA------IGTM  248 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhh------cCCC
Confidence            56788888874 344556667765  46788888776543322   2334431   12211111222222      2358


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      |+||- ..  .....+..+.+.|++||.++.-.
T Consensus       249 D~vid-~~--g~~~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        249 DYIID-TV--SAVHALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             CEEEE-CC--CCHHHHHHHHHHhcCCcEEEEeC
Confidence            98883 21  12346777889999999988644

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=92.71  E-value=0.11  Score=34.33  Aligned_cols=34  Identities=9%  Similarity=0.094  Sum_probs=26.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE   55 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~   55 (187)
                      +....+|||||.|....-|...   +.+-.++|....
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~R   91 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARRR   91 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC---CCCccccccccc
Confidence            3558999999999988777654   466788888654

; GO: 0008168 methyltransferase activity

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=92.70  E-value=0.79  Score=32.88  Aligned_cols=100  Identities=15%  Similarity=0.077  Sum_probs=58.2

Q ss_pred             EcccccHHHHHHHhhCCCCCEEEEEe--CCchHHH---HHHHHHHHcCCCCceEEEe-CCchHHHHHHhhcccCCCceeE
Q 029836           26 IGVFTGYSLLATALAIPDDGKILALD--ITKEHYE---KGLPIIQKAGVAHKIDFRE-GPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        26 iG~g~G~~~~~l~~~~~~~~~v~~vd--~~~~~~~---~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      +|=|.=..++.+++.++....+++.-  ...+..+   .+.++++.... ..+++.+ -|+...-.... .  ..+.||.
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~-~--~~~~FDr   78 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFR-L--KNQRFDR   78 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCccccccc-c--cCCcCCE
Confidence            45556667777888776445565544  4433333   23355555422 3344433 35543322210 0  1578999


Q ss_pred             EEEcCCCcc----------------cHHHHHHHHhcccCCeEEEEe
Q 029836          100 VFVDADKDN----------------YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus       100 v~~d~~~~~----------------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+..-++..                ...+|..+.++|+++|.+.+.
T Consensus        79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT  124 (166)
T PF10354_consen   79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT  124 (166)
T ss_pred             EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            998765222                256888899999999998874

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=92.70  E-value=2.2  Score=34.89  Aligned_cols=122  Identities=14%  Similarity=0.097  Sum_probs=64.6

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +|...++=+.++.....+.++-.++|+......+...+.++.+|+..+..-......-+.++..|.  ++.+...+..++
T Consensus        52 np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~--~v~~~~~d~~~l  129 (385)
T PRK08574         52 NPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGV--KVVLAYPSTEDI  129 (385)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCc--EEEEECCCHHHH
Confidence            345666666677777777888888877666555544455456676665544333222222333343  444444444333


Q ss_pred             HHHHhhcccCCC-ceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836           84 LDQLIQDEKYHG-TFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW  133 (187)
Q Consensus        84 l~~~~~~~~~~~-~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  133 (187)
                      ...+      .. ...+|++...  +.....-++.+.++.+. |..+++|++..
T Consensus       130 ~~~i------~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a  177 (385)
T PRK08574        130 IEAI------KEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFA  177 (385)
T ss_pred             HHhc------CccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCC
Confidence            3332      23 5678887643  21111123444444444 55777787753

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=92.66  E-value=0.58  Score=36.14  Aligned_cols=75  Identities=16%  Similarity=0.082  Sum_probs=47.5

Q ss_pred             HHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836            7 EAQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIP----DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP   79 (187)
Q Consensus         7 ~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~l~~~~~----~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d   79 (187)
                      +.+++..+..   +.+...++|+|||.|..+.+++..++    +...++.||-..... .+...++.......++=+..|
T Consensus         3 qsSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riD   81 (259)
T PF05206_consen    3 QSSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRID   81 (259)
T ss_pred             HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEE
Confidence            4456666654   23556899999999999999999884    246899999865433 333444443321234444455


Q ss_pred             chH
Q 029836           80 ALP   82 (187)
Q Consensus        80 ~~~   82 (187)
                      ..+
T Consensus        82 I~d   84 (259)
T PF05206_consen   82 IKD   84 (259)
T ss_pred             eec
Confidence            544

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=92.62  E-value=0.41  Score=29.52  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=21.8

Q ss_pred             hcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCC
Q 029836           17 LINAKNTMEIGVFTGY-SLLATALAIPDDGKILALDIT   53 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~-~~~~l~~~~~~~~~v~~vd~~   53 (187)
                      ...|++||-||+.+|+ .+..++.++..++..++|-.+
T Consensus        36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE   73 (78)
T PF12242_consen   36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE   73 (78)
T ss_dssp             -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred             CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence            3567999999999998 444456555546777776554

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=92.60  E-value=0.19  Score=40.59  Aligned_cols=88  Identities=18%  Similarity=0.212  Sum_probs=67.6

Q ss_pred             HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcc
Q 029836           12 SMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDE   91 (187)
Q Consensus        12 ~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~   91 (187)
                      ..++...++.+|+|+.|..|..|..++..+...+++.++|.++...+..++.++..|. ..++...+|+... +...   
T Consensus       206 A~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~-~~~~~~~~df~~t-~~~~---  280 (413)
T KOG2360|consen  206 AHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV-SIVESVEGDFLNT-ATPE---  280 (413)
T ss_pred             hhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC-CccccccccccCC-CCcc---
Confidence            3445555678999999999999999998877679999999999999999999999988 4667778888654 2110   


Q ss_pred             cCCCceeEEEEcCC
Q 029836           92 KYHGTFDFVFVDAD  105 (187)
Q Consensus        92 ~~~~~~D~v~~d~~  105 (187)
                       +-...-.|++|+.
T Consensus       281 -~~~~v~~iL~Dps  293 (413)
T KOG2360|consen  281 -KFRDVTYILVDPS  293 (413)
T ss_pred             -cccceeEEEeCCC
Confidence             0234567777765

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=92.59  E-value=2  Score=35.60  Aligned_cols=124  Identities=15%  Similarity=0.190  Sum_probs=71.7

Q ss_pred             CCEEEEEcc-cccHH------HHHHHhhCCCCCEEEEEeCC-chHHHHHHHHHHHcCCCCceEEEeC----CchHHHHHH
Q 029836           20 AKNTMEIGV-FTGYS------LLATALAIPDDGKILALDIT-KEHYEKGLPIIQKAGVAHKIDFREG----PALPLLDQL   87 (187)
Q Consensus        20 ~~~vLeiG~-g~G~~------~~~l~~~~~~~~~v~~vd~~-~~~~~~a~~~~~~~~~~~~i~~~~~----d~~~~l~~~   87 (187)
                      |..|+=+|- |+|-.      +.++.+ .....-+++.|.. |.++++.+....+.+.    .|+..    |+.+.....
T Consensus       100 P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v----~~f~~~~~~~Pv~Iak~a  174 (451)
T COG0541         100 PTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGV----PFFGSGTEKDPVEIAKAA  174 (451)
T ss_pred             CeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCC----ceecCCCCCCHHHHHHHH
Confidence            456777763 34433      333333 1223457888874 5566777777766554    34332    333332221


Q ss_pred             hhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHH
Q 029836           88 IQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKA  162 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (187)
                      .+.- ....||+|++|-.     .+...+.+..+...++|.=+|++-|...+               +......+.|++.
T Consensus       175 l~~a-k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---------------QdA~~~A~aF~e~  238 (451)
T COG0541         175 LEKA-KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---------------QDAVNTAKAFNEA  238 (451)
T ss_pred             HHHH-HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---------------hHHHHHHHHHhhh
Confidence            1100 1457999999965     23345566677789999998888776543               3455667777776


Q ss_pred             Hh
Q 029836          163 LA  164 (187)
Q Consensus       163 ~~  164 (187)
                      +-
T Consensus       239 l~  240 (451)
T COG0541         239 LG  240 (451)
T ss_pred             cC
Confidence            63

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=92.56  E-value=1.1  Score=37.47  Aligned_cols=93  Identities=19%  Similarity=0.290  Sum_probs=55.1

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEE------EEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPD-DGKIL------ALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~------~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      ...+.++|+-||||+  .+...+..+.. +.+|+      ++|......+.|.+    .|+      ..++..+.++   
T Consensus        32 ~~LkgKtIaIIGyGS--qG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~----dGF------~v~~~~Ea~~---   96 (487)
T PRK05225         32 SYLKGKKIVIVGCGA--QGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE----NGF------KVGTYEELIP---   96 (487)
T ss_pred             HHhCCCEEEEEccCH--HHHHHhCCCccccceeEEeccccccccccchHHHHHh----cCC------ccCCHHHHHH---
Confidence            345779999999954  44433333321 23444      34444444443332    343      1234444433   


Q ss_pred             hcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           89 QDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                             ..|+|++-.+......+.+.+.+.||+|..|.+..
T Consensus        97 -------~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsH  131 (487)
T PRK05225         97 -------QADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSH  131 (487)
T ss_pred             -------hCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecC
Confidence                   46999887664446667789999999999998853

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=92.50  E-value=1.3  Score=36.47  Aligned_cols=101  Identities=18%  Similarity=0.193  Sum_probs=59.3

Q ss_pred             cCCCEEEEEc--ccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHc----CCCCceEEEeC----CchHHHHH
Q 029836           18 INAKNTMEIG--VFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKA----GVAHKIDFREG----PALPLLDQ   86 (187)
Q Consensus        18 ~~~~~vLeiG--~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~----~~~~~i~~~~~----d~~~~l~~   86 (187)
                      .+..+|+-+|  .+.|..+..+++.... ..+|+++|.+++.++.+++.+...    |.  ...++..    +..+.+..
T Consensus       174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~~v~~  251 (410)
T cd08238         174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHATLME  251 (410)
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHHHHHH
Confidence            3456888887  3467777777876531 247999999999998887753211    11  1122221    22222222


Q ss_pred             HhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           87 LIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      +..    ...+|+|+....   ....+..+.+.++++|.++
T Consensus       252 ~t~----g~g~D~vid~~g---~~~~~~~a~~~l~~~G~~v  285 (410)
T cd08238         252 LTG----GQGFDDVFVFVP---VPELVEEADTLLAPDGCLN  285 (410)
T ss_pred             HhC----CCCCCEEEEcCC---CHHHHHHHHHHhccCCeEE
Confidence            210    236898886432   2456777888999777554

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PLN02494 adenosylhomocysteinase

Probab=92.40  E-value=2.4  Score=35.60  Aligned_cols=95  Identities=13%  Similarity=0.089  Sum_probs=55.2

Q ss_pred             HHHHHHhh----cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836           10 FFSMLLKL----INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus        10 ~l~~l~~~----~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      ++..+.+.    ..+++++-+|+| .|......++.+  +.+|+.+|.++.....+..    .|.    .+.  +..+.+
T Consensus       240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEal  307 (477)
T PLN02494        240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGY----QVL--TLEDVV  307 (477)
T ss_pred             HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCC----eec--cHHHHH
Confidence            34445544    356899999987 344444445554  4689999999865433322    122    221  232222


Q ss_pred             HHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           85 DQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                                ...|+|+......  .-+.......||+|++|+-
T Consensus       308 ----------~~ADVVI~tTGt~--~vI~~e~L~~MK~GAiLiN  339 (477)
T PLN02494        308 ----------SEADIFVTTTGNK--DIIMVDHMRKMKNNAIVCN  339 (477)
T ss_pred             ----------hhCCEEEECCCCc--cchHHHHHhcCCCCCEEEE
Confidence                      2469888733211  1223567789999999985

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=92.39  E-value=2.8  Score=31.60  Aligned_cols=81  Identities=15%  Similarity=0.110  Sum_probs=46.4

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCC-------------------chHHHHHHHHHHHcCCCCceEEEe
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDIT-------------------KEHYEKGLPIIQKAGVAHKIDFRE   77 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~-------------------~~~~~~a~~~~~~~~~~~~i~~~~   77 (187)
                      .+..+|+-+||| .|...+..+...+ -++++.+|.+                   ....+.+++.+++.+-.-+++.+.
T Consensus        19 L~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~   97 (228)
T cd00757          19 LKNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN   97 (228)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence            356789999996 3433333333323 4788888643                   344566777777765433555555


Q ss_pred             CCch-HHHHHHhhcccCCCceeEEEEcCC
Q 029836           78 GPAL-PLLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        78 ~d~~-~~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      .... +.+..+      -..+|+|+...+
T Consensus        98 ~~i~~~~~~~~------~~~~DvVi~~~d  120 (228)
T cd00757          98 ERLDAENAEEL------IAGYDLVLDCTD  120 (228)
T ss_pred             ceeCHHHHHHH------HhCCCEEEEcCC
Confidence            4432 222333      246899986654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK07671 cystathionine beta-lyase; Provisional

Probab=92.39  E-value=3.4  Score=33.64  Aligned_cols=122  Identities=14%  Similarity=0.177  Sum_probs=65.5

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|....+-+.++.....+..+-+++|.+.....+. .+.++.+|+..+..-. ......+.++..|.  ++.++..+..+
T Consensus        49 ~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~-~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~  125 (377)
T PRK07671         49 NPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM-LFSSGDHVILTDDVYGGTYRVMTKVLNRFGI--EHTFVDTSNLE  125 (377)
T ss_pred             ChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH-HhCCCCEEEECCCccchHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence            46667777777776666666678888776544432 3444677877665433 33333444455554  45555432223


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc-CCeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK-VGGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~~  133 (187)
                      .+....     .....+|++..+  +......++.+.++.+ .|..+++|++..
T Consensus       126 ~l~~ai-----~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~  174 (377)
T PRK07671        126 EVEEAI-----RPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFM  174 (377)
T ss_pred             HHHHhc-----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence            233322     334578887543  2112223344444444 356777777753

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=92.38  E-value=1.7  Score=31.33  Aligned_cols=86  Identities=16%  Similarity=0.086  Sum_probs=50.0

Q ss_pred             cCCCEEEEEcccccHHHHHH---HhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           18 INAKNTMEIGVFTGYSLLAT---ALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l---~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ...++|.-+|+|  .++..+   ++.+  +.+|++.|.+......    ...    ..+  ...+..+.++         
T Consensus        34 l~g~tvgIiG~G--~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~----~~~----~~~--~~~~l~ell~---------   90 (178)
T PF02826_consen   34 LRGKTVGIIGYG--RIGRAVARRLKAF--GMRVIGYDRSPKPEEG----ADE----FGV--EYVSLDELLA---------   90 (178)
T ss_dssp             STTSEEEEESTS--HHHHHHHHHHHHT--T-EEEEEESSCHHHHH----HHH----TTE--EESSHHHHHH---------
T ss_pred             cCCCEEEEEEEc--CCcCeEeeeeecC--CceeEEecccCChhhh----ccc----ccc--eeeehhhhcc---------
Confidence            356799999884  444444   4444  5799999999875541    221    122  2335555554         


Q ss_pred             CceeEEEEcCC--CcccHHHHHHHHhcccCCeEEE
Q 029836           95 GTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        95 ~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                       ..|+|++..+  .+...-+=+.....||+|.+||
T Consensus        91 -~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv  124 (178)
T PF02826_consen   91 -QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV  124 (178)
T ss_dssp             -H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE
T ss_pred             -hhhhhhhhhccccccceeeeeeeeeccccceEEE
Confidence             3589998766  2222222245567889999887

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=92.31  E-value=2  Score=27.65  Aligned_cols=76  Identities=16%  Similarity=0.197  Sum_probs=50.5

Q ss_pred             EEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCe
Q 029836           47 ILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGG  124 (187)
Q Consensus        47 v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG  124 (187)
                      |..+|-++...+..++.++..+. ..+. ...+..+.+..+.     ...+|+|++|..  .....++++.+...-....
T Consensus         1 Ilivd~~~~~~~~l~~~l~~~~~-~~v~-~~~~~~~~~~~~~-----~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~   73 (112)
T PF00072_consen    1 ILIVDDDPEIRELLEKLLERAGY-EEVT-TASSGEEALELLK-----KHPPDLIIIDLELPDGDGLELLEQIRQINPSIP   73 (112)
T ss_dssp             EEEEESSHHHHHHHHHHHHHTTE-EEEE-EESSHHHHHHHHH-----HSTESEEEEESSSSSSBHHHHHHHHHHHTTTSE
T ss_pred             cEEEECCHHHHHHHHHHHHhCCC-CEEE-EECCHHHHHHHhc-----ccCceEEEEEeeecccccccccccccccccccc
Confidence            45689999999999999996554 1222 4456656665553     457999999975  3455677777765553444


Q ss_pred             EEEEe
Q 029836          125 VIGYD  129 (187)
Q Consensus       125 ~lv~~  129 (187)
                      ++++.
T Consensus        74 ii~~t   78 (112)
T PF00072_consen   74 IIVVT   78 (112)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            55543

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.28  E-value=2.6  Score=33.15  Aligned_cols=83  Identities=20%  Similarity=0.186  Sum_probs=54.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcc-cCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDE-KYH   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~-~~~   94 (187)
                      .++.||-.|.|.|. ++.++..+ ..+++++..|++.+......+.+++.|   ++....+|..+  -+.+.++.. .+.
T Consensus        37 ~g~~vLITGgg~Gl-Gr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   37 SGEIVLITGGGSGL-GRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             cCCEEEEeCCCchH-HHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            45688999988876 33333322 225789999999999999888888875   56666666532  122222111 125


Q ss_pred             CceeEEEEcCC
Q 029836           95 GTFDFVFVDAD  105 (187)
Q Consensus        95 ~~~D~v~~d~~  105 (187)
                      +..|+++..+.
T Consensus       113 G~V~ILVNNAG  123 (300)
T KOG1201|consen  113 GDVDILVNNAG  123 (300)
T ss_pred             CCceEEEeccc
Confidence            78899987754

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=92.21  E-value=1.8  Score=35.44  Aligned_cols=106  Identities=11%  Similarity=-0.006  Sum_probs=68.3

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCc-eEEEeCCchHHHHHH
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK-IDFREGPALPLLDQL   87 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~l~~~   87 (187)
                      -+|+.+.......+|+-++=..|..+.+++..-+     +.+--+--.....++|++.++++.. +++..  +.+.+   
T Consensus        34 ~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~--~~~~~---  103 (378)
T PRK15001         34 YLLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFLD--STADY---  103 (378)
T ss_pred             HHHHHHhhcccCCCEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceeec--ccccc---
Confidence            3455554432223899999999999999985422     2222223334566788999888543 45542  22222   


Q ss_pred             hhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcccCCeEEEEeC
Q 029836           88 IQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                            .+.+|+|++-.++.  .....+..+.+.|++|+.+++-+
T Consensus       104 ------~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~  142 (378)
T PRK15001        104 ------PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA  142 (378)
T ss_pred             ------cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence                  34689999987743  34556677888999999987643

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=92.12  E-value=3.7  Score=34.15  Aligned_cols=123  Identities=12%  Similarity=0.090  Sum_probs=68.2

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-hHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~-~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|....+-..++.....+..+-.++|+......+...+.++.+|+..+..- .........++..|.  ++.++..+..+
T Consensus        63 ~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv--~v~~vd~~d~e  140 (431)
T PRK08248         63 NPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGI--TVKFVDPSDPE  140 (431)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCE--EEEEECCCCHH
Confidence            566677777777777778888888888777666654455456777665432 223334444555554  45555443233


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  133 (187)
                      .+....     .+...+|++...  +......++.+.++.+. |..+++|++..
T Consensus       141 ~l~~ai-----~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a  189 (431)
T PRK08248        141 NFEAAI-----TDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFA  189 (431)
T ss_pred             HHHHhc-----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCC
Confidence            333332     345678887633  21111223344444444 55677777753

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=92.08  E-value=0.57  Score=37.00  Aligned_cols=110  Identities=17%  Similarity=0.170  Sum_probs=64.7

Q ss_pred             CEEEEEcccccHHHHHHHhhC----C---------------CCCEEEEEeCCchH--HHHHHHHHHHc------------
Q 029836           21 KNTMEIGVFTGYSLLATALAI----P---------------DDGKILALDITKEH--YEKGLPIIQKA------------   67 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~----~---------------~~~~v~~vd~~~~~--~~~a~~~~~~~------------   67 (187)
                      .+||-||.|.|.-...++..+    .               +...++.||+.+..  +......+...            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            699999999998777776655    0               11489999997643  23333333332            


Q ss_pred             CC--C--CceEEEeCCchHHHH-HHhhcccCCCceeEEEEc--------CCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           68 GV--A--HKIDFREGPALPLLD-QLIQDEKYHGTFDFVFVD--------ADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        68 ~~--~--~~i~~~~~d~~~~l~-~~~~~~~~~~~~D~v~~d--------~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..  +  -+++|.+.|....-. .+..-- .....++|-+-        ........|+..+-..+++|.+|++.|.
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll-~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS  243 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLL-GPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS  243 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHh-ccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence            00  1  246788888765322 110000 01234555211        1134456788888899999999988664

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=92.02  E-value=3.4  Score=33.27  Aligned_cols=103  Identities=17%  Similarity=0.283  Sum_probs=56.9

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC--CchHHHHHHhhccc
Q 029836           16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG--PALPLLDQLIQDEK   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~~l~~~~~~~~   92 (187)
                      ...+..+||-+|+| .|..+..+++..+ ..++++++.+++..+.+++    .|...-+.....  +..+.+..+.    
T Consensus       184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~----  254 (369)
T cd08301         184 KVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT----  254 (369)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh----
Confidence            34566789888864 2334455666653 2489999999887776643    443111111110  1112222221    


Q ss_pred             CCCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836           93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT  131 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                       .+.+|+++--.   .....+..+.+.+++| |.++.-..
T Consensus       255 -~~~~d~vid~~---G~~~~~~~~~~~~~~~~g~~v~~g~  290 (369)
T cd08301         255 -GGGVDYSFECT---GNIDAMISAFECVHDGWGVTVLLGV  290 (369)
T ss_pred             -CCCCCEEEECC---CChHHHHHHHHHhhcCCCEEEEECc
Confidence             33689777322   1234566677888996 88876544

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=91.97  E-value=3.3  Score=33.28  Aligned_cols=101  Identities=21%  Similarity=0.255  Sum_probs=63.5

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC----CchHHHHHHhhcc
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG----PALPLLDQLIQDE   91 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~----d~~~~l~~~~~~~   91 (187)
                      ..+..++.-+||| .|..++.-+.... ..+++++|++++.++.|++    .|.   .++++.    |..+.+..+.   
T Consensus       183 v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~----fGA---T~~vn~~~~~~vv~~i~~~T---  251 (366)
T COG1062         183 VEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKK----FGA---THFVNPKEVDDVVEAIVELT---  251 (366)
T ss_pred             CCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHh----cCC---ceeecchhhhhHHHHHHHhc---
Confidence            4456788888886 4556666565543 6899999999999988876    332   334433    2333334442   


Q ss_pred             cCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           92 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                        ++..|.+|--.   .....++.....+.++|..++-.+..
T Consensus       252 --~gG~d~~~e~~---G~~~~~~~al~~~~~~G~~v~iGv~~  288 (366)
T COG1062         252 --DGGADYAFECV---GNVEVMRQALEATHRGGTSVIIGVAG  288 (366)
T ss_pred             --CCCCCEEEEcc---CCHHHHHHHHHHHhcCCeEEEEecCC
Confidence              34778886322   22346666666777788887755543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=91.94  E-value=3  Score=34.62  Aligned_cols=95  Identities=15%  Similarity=0.033  Sum_probs=58.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCCc
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHGT   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~   96 (187)
                      .++++-+|+  |..+..+++.+.. +..++.+|.+++.++.+++..      ..+.++.||+.+.  +....     -..
T Consensus       231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~-----~~~  297 (453)
T PRK09496        231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEG-----IDE  297 (453)
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcC-----Ccc
Confidence            578999887  6677777666642 578999999998877655532      3567788888543  33221     357


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      +|.|++-.......-......+.+.+.-+++
T Consensus       298 a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~  328 (453)
T PRK09496        298 ADAFIALTNDDEANILSSLLAKRLGAKKVIA  328 (453)
T ss_pred             CCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence            8888875543322222333334455543443

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=91.92  E-value=4.3  Score=32.67  Aligned_cols=102  Identities=19%  Similarity=0.295  Sum_probs=57.2

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC--chHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP--ALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d--~~~~l~~~~~~~~~   93 (187)
                      ..+.++||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++    .|...-+.....+  ..+.+..+.     
T Consensus       182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~-----  251 (365)
T cd08277         182 VEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT-----  251 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh-----
Confidence            3456789888864 3334455666653 2379999998887776643    3431111111111  122222221     


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                      .+.+|+|+--..   ....+...++.++++ |.++.-..
T Consensus       252 ~~g~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         252 GGGVDYSFECTG---NADLMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             CCCCCEEEECCC---ChHHHHHHHHhcccCCCEEEEEcC
Confidence            346898884221   134567778889875 88876443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=91.92  E-value=2.4  Score=33.58  Aligned_cols=101  Identities=20%  Similarity=0.279  Sum_probs=56.7

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..++.+||..|+| .|..+..+++..+ ...+++++.++...+.+++    .+...-+.....+..+.+.....    .+
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~----~~  235 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTG----GR  235 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcC----CC
Confidence            3456788887764 3556677777753 2478888887766655443    33211111112222222222210    25


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+|+++-...   ....+...++.|+++|.++.-
T Consensus       236 ~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         236 GVDCVIEAVG---FEETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             CCcEEEEccC---CHHHHHHHHHHhhcCCEEEEE
Confidence            6898874221   124677788899999988853

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=91.90  E-value=0.61  Score=37.06  Aligned_cols=68  Identities=13%  Similarity=-0.055  Sum_probs=47.4

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEE
Q 029836           23 TMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFV  102 (187)
Q Consensus        23 vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~  102 (187)
                      |+|+-||.|..+.-+..+.  -.-+.++|+++.+.+..+.|+.      . .+..+|..++...-      ...+|+++.
T Consensus         1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~------~-~~~~~Di~~~~~~~------~~~~dvl~g   65 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFG------N-KVPFGDITKISPSD------IPDFDILLG   65 (315)
T ss_pred             CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCC------C-CCCccChhhhhhhh------CCCcCEEEe
Confidence            5899999999998887651  2346789999999888777763      2 34567776654321      235899987


Q ss_pred             cCC
Q 029836          103 DAD  105 (187)
Q Consensus       103 d~~  105 (187)
                      ..+
T Consensus        66 g~P   68 (315)
T TIGR00675        66 GFP   68 (315)
T ss_pred             cCC
Confidence            654

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=91.86  E-value=1.5  Score=34.59  Aligned_cols=88  Identities=17%  Similarity=0.142  Sum_probs=50.0

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-C--CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           21 KNTMEIGVFTGYSLLATALAIPD-D--GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~-~--~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+|.-||+|.  .+..++..+.. +  .+|+++|.+++..+.+++    .+...  .. ..+..    ..      -...
T Consensus         7 ~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~~-~~~~~----~~------~~~a   67 (307)
T PRK07502          7 DRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--RV-TTSAA----EA------VKGA   67 (307)
T ss_pred             cEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--ee-cCCHH----HH------hcCC
Confidence            5788888754  33333333221 2  389999999877655532    33211  11 11211    11      1346


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |+|++-.+......+++.+.+.+++|.+++
T Consensus        68 DvViiavp~~~~~~v~~~l~~~l~~~~iv~   97 (307)
T PRK07502         68 DLVILCVPVGASGAVAAEIAPHLKPGAIVT   97 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            888887665555666777777788887654

>PTZ00357 methyltransferase; Provisional

Probab=91.83  E-value=1  Score=39.54  Aligned_cols=104  Identities=10%  Similarity=0.036  Sum_probs=65.8

Q ss_pred             EEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHH-cCC-------CCceEEEeCCchHHHHHHh-h
Q 029836           22 NTMEIGVFTGYSLLATALAI---PDDGKILALDITKEHYEKGLPIIQK-AGV-------AHKIDFREGPALPLLDQLI-Q   89 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~---~~~~~v~~vd~~~~~~~~a~~~~~~-~~~-------~~~i~~~~~d~~~~l~~~~-~   89 (187)
                      .|+-+|+|-|-+....+++.   ....+|++||-++..+...+.+... ...       .++++++..|+.++-.... .
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            58999999999776655443   2346899999997765554444322 122       2468999999987632110 0


Q ss_pred             cc---cCCCceeEEEEc-----CCCcccHHHHHHHHhcccC----CeE
Q 029836           90 DE---KYHGTFDFVFVD-----ADKDNYVNYHKRLIELVKV----GGV  125 (187)
Q Consensus        90 ~~---~~~~~~D~v~~d-----~~~~~~~~~~~~~~~~L~~----gG~  125 (187)
                      +.   ...+++|+|+.-     ++.+--++.++-+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence            00   002479999753     2245557777777788876    665

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=91.79  E-value=4.2  Score=32.26  Aligned_cols=92  Identities=16%  Similarity=0.063  Sum_probs=56.2

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+..+||-.|+| .|..+..+++..  +.++++++.+++..+.+++    .|...   ++.  ..+. .        .+
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~-~--------~~  222 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAAS---AGG--AYDT-P--------PE  222 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCce---ecc--cccc-C--------cc
Confidence            3456799999864 344455667664  4689999999887665544    45421   111  1010 0        23


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|+++....   ....+....+.|++||.+++-..
T Consensus       223 ~~d~~i~~~~---~~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       223 PLDAAILFAP---AGGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             cceEEEECCC---cHHHHHHHHHhhCCCcEEEEEec
Confidence            5787654221   13467788899999999987544

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=91.77  E-value=1.4  Score=34.77  Aligned_cols=96  Identities=9%  Similarity=-0.016  Sum_probs=53.0

Q ss_pred             CEEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEE-eCCchHH-HHHHhhcccCCCc
Q 029836           21 KNTMEIGVFT--GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFR-EGPALPL-LDQLIQDEKYHGT   96 (187)
Q Consensus        21 ~~vLeiG~g~--G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~-l~~~~~~~~~~~~   96 (187)
                      .+|+-+|+|.  |+++..|++.   +..|+.++..++.++..++   +.|+    .+. .+....+ .+....+  ..+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~---~~Gl----~i~~~g~~~~~~~~~~~~~--~~~~   70 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQ---AGGL----TLVEQGQASLYAIPAETAD--AAEP   70 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhh---cCCe----EEeeCCcceeeccCCCCcc--cccc
Confidence            4688898862  3344444443   4679999887655543332   1122    111 0110000 0000000  0357


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +|+|++-....+..+.++.+.+.+.++..++.
T Consensus        71 ~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~  102 (305)
T PRK05708         71 IHRLLLACKAYDAEPAVASLAHRLAPGAELLL  102 (305)
T ss_pred             cCEEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence            99999876555567788888999999987763

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=91.71  E-value=4.2  Score=33.28  Aligned_cols=122  Identities=11%  Similarity=0.029  Sum_probs=61.9

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeC-Cch
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREG-PAL   81 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~-d~~   81 (187)
                      +|...++-+.++.....+..+-+++|+..+...+...+.++.+|+..+..-. ........++..+.  ++.+... |..
T Consensus        60 ~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi--~~~~~d~~d~e  137 (388)
T PRK07811         60 NPTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGV--EYTPVDLSDLD  137 (388)
T ss_pred             CccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCe--EEEEeCCCCHH
Confidence            3556677777777776666777777765544444333454567777665433 22222222222232  2333322 232


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW  133 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  133 (187)
                      ++...+      .+...+|++..+  +......++.+.++.++ |.++++|++..
T Consensus       138 ~l~~~i------~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a  186 (388)
T PRK07811        138 AVRAAI------TPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFA  186 (388)
T ss_pred             HHHHhc------CcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence            232222      335678887643  22223334444444443 56777787654

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=91.64  E-value=0.22  Score=35.71  Aligned_cols=99  Identities=13%  Similarity=0.076  Sum_probs=55.1

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe------------------
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE------------------   77 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~------------------   77 (187)
                      ..+|.+|+-+|.| .|..+..++..++  .+++..|..+...+....    .+. ..+.+..                  
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~----~~~-~~i~~~~~~~~~~~~~~~~~~~~~~   89 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERPERLRQLES----LGA-YFIEVDYEDHLERKDFDKADYYEHP   89 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHH----TTT-EESEETTTTTTTSB-CCHHHCHHHC
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCHHHHHhhhc----ccC-ceEEEcccccccccccchhhhhHHH
Confidence            3568899999988 4667777888874  899999998876655443    221 2233310                  


Q ss_pred             CCchHHHHHHhhcccCCCceeEEEEcC--CCcccHHHH-HHHHhcccCCeEEEE
Q 029836           78 GPALPLLDQLIQDEKYHGTFDFVFVDA--DKDNYVNYH-KRLIELVKVGGVIGY  128 (187)
Q Consensus        78 ~d~~~~l~~~~~~~~~~~~~D~v~~d~--~~~~~~~~~-~~~~~~L~~gG~lv~  128 (187)
                      ......+.+.      -..+|+|+...  +....+.++ ++..+.|++|.+++=
T Consensus        90 ~~~~~~f~~~------i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvD  137 (168)
T PF01262_consen   90 ESYESNFAEF------IAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVD  137 (168)
T ss_dssp             CHHHHHHHHH------HHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEE
T ss_pred             HHhHHHHHHH------HhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEE
Confidence            1111122222      24689998653  233333333 556678898888763

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=91.50  E-value=0.89  Score=39.05  Aligned_cols=93  Identities=6%  Similarity=-0.054  Sum_probs=56.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCCce
Q 029836           21 KNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHGTF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~~   97 (187)
                      .+++-+|+  |..+..+++.+.. +..++.+|.+++..+.+++        .....+.||+.+.  +.+..     -++.
T Consensus       418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~-----i~~a  482 (558)
T PRK10669        418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAH-----LDCA  482 (558)
T ss_pred             CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcC-----cccc
Confidence            45666655  7777777776642 4689999999988777654        2467888888653  33321     3578


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |.+++..........+-.+.+...+...++.
T Consensus       483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iia  513 (558)
T PRK10669        483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIA  513 (558)
T ss_pred             CEEEEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence            8777653322222222233344566666664

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=91.39  E-value=4.8  Score=32.02  Aligned_cols=101  Identities=16%  Similarity=0.125  Sum_probs=57.8

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDG-KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..++.+||-.|+| .|..+..+++..  +. ++++++.+++..+.+++    .|...-+.....+..+.+.....    .
T Consensus       170 ~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~----~  239 (351)
T cd08233         170 FKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTG----G  239 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhC----C
Confidence            3456788888753 333455566664  34 89999988887776643    34311111122222222222210    2


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+|+|+--..   ....++.+++.|+++|.++.-.
T Consensus       240 ~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g  272 (351)
T cd08233         240 GGVDVSFDCAG---VQATLDTAIDALRPRGTAVNVA  272 (351)
T ss_pred             CCCCEEEECCC---CHHHHHHHHHhccCCCEEEEEc
Confidence            35899985321   1345777888999999888643

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=91.31  E-value=6.8  Score=31.72  Aligned_cols=121  Identities=12%  Similarity=0.085  Sum_probs=66.9

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|....+-..++.....+..+-.++|.......+ ..+.++.+|+..+..-. ........++..|.  ++.++..+..+
T Consensus        51 ~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~--~v~~vd~~d~~  127 (366)
T PRK08247         51 NPTRGVLEQAIADLEGGDQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNV--RFVYVNTASLK  127 (366)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCc--eEEEECCCCHH
Confidence            4566677777777776666666777666555433 34444567777665333 33334444555554  44554432223


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTL  132 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~  132 (187)
                      .+....     .+..++|++..+  +......++.+.++.++ |.++++|++.
T Consensus       128 ~l~~~i-----~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~  175 (366)
T PRK08247        128 AIEQAI-----TPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTF  175 (366)
T ss_pred             HHHHhc-----ccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence            333322     335678887543  32233455555555554 5677778876

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=91.29  E-value=3.8  Score=32.34  Aligned_cols=100  Identities=19%  Similarity=0.260  Sum_probs=59.4

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ...+..+||..|+|. |..+..+++..  +.+++++..+++..+.+++    .+...-+.....+..+.+.....    .
T Consensus       156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~----~  225 (337)
T cd08261         156 GVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTD----G  225 (337)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhC----C
Confidence            344667999988763 66777788775  5789998888776665533    33211112222222222332211    2


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..+|+++-...   -...+..+.+.|+++|.++.
T Consensus       226 ~~vd~vld~~g---~~~~~~~~~~~l~~~G~~i~  256 (337)
T cd08261         226 EGADVVIDATG---NPASMEEAVELVAHGGRVVL  256 (337)
T ss_pred             CCCCEEEECCC---CHHHHHHHHHHHhcCCEEEE
Confidence            45899985421   13456777889999998875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.19  E-value=2.8  Score=33.37  Aligned_cols=106  Identities=19%  Similarity=0.242  Sum_probs=59.9

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ...++.++.-+|.|. |....+-+++.+ .+++++||++++..+.|++.=...-..++ ++ .....+.+.+.-     +
T Consensus       189 kv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~fGaTe~iNp~-d~-~~~i~evi~EmT-----d  260 (375)
T KOG0022|consen  189 KVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEFGATEFINPK-DL-KKPIQEVIIEMT-----D  260 (375)
T ss_pred             ccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhcCcceecChh-hc-cccHHHHHHHHh-----c
Confidence            345667888888764 334444455433 68999999999999888762211111111 11 123445555553     5


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCcC
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNTL  132 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~~  132 (187)
                      +.+|.-|=-.   ...+.+.++....++| |.-++-.+.
T Consensus       261 gGvDysfEc~---G~~~~m~~al~s~h~GwG~sv~iGv~  296 (375)
T KOG0022|consen  261 GGVDYSFECI---GNVSTMRAALESCHKGWGKSVVIGVA  296 (375)
T ss_pred             CCceEEEEec---CCHHHHHHHHHHhhcCCCeEEEEEec
Confidence            7888888221   1244455555555667 666554443

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=91.17  E-value=3.3  Score=34.30  Aligned_cols=104  Identities=15%  Similarity=0.138  Sum_probs=55.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcc-----cCC
Q 029836           21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDE-----KYH   94 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~-----~~~   94 (187)
                      ++|--||.|.  .+..++..+. .+.+|+++|.+++.++...    . |   .+.+...+..+.+....+.+     .+.
T Consensus         4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~----~-g---~~~~~e~~l~~~l~~~~~~g~l~~~~~~   73 (415)
T PRK11064          4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTIN----R-G---EIHIVEPDLDMVVKTAVEGGYLRATTTP   73 (415)
T ss_pred             cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHH----C-C---CCCcCCCCHHHHHHHHhhcCceeeeccc
Confidence            5677887764  3333333332 1478999999998776432    1 1   12222222222222111000     001


Q ss_pred             CceeEEEEcCCC----------cccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           95 GTFDFVFVDADK----------DNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        95 ~~~D~v~~d~~~----------~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      ...|+||+.-+.          .......+.+.+.+++|.++|...+...
T Consensus        74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~p  123 (415)
T PRK11064         74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPV  123 (415)
T ss_pred             ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence            246888876542          2344556777788999988887655443

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=91.16  E-value=4.6  Score=29.47  Aligned_cols=104  Identities=20%  Similarity=0.237  Sum_probs=50.0

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhccc--------
Q 029836           22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEK--------   92 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~--------   92 (187)
                      +|--||.  |+.++.+|..+. .+.+|+++|++++.++...+     |..   .+..-...+.+.+....++        
T Consensus         2 ~I~ViGl--GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~-----g~~---p~~E~~l~~ll~~~~~~~~l~~t~~~~   71 (185)
T PF03721_consen    2 KIAVIGL--GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN-----GEL---PIYEPGLDELLKENVSAGRLRATTDIE   71 (185)
T ss_dssp             EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT-----TSS---SS-CTTHHHHHHHHHHTTSEEEESEHH
T ss_pred             EEEEECC--CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh-----ccc---cccccchhhhhccccccccchhhhhhh
Confidence            4566665  444444443332 15799999999987765542     111   1111111112221110000        


Q ss_pred             C-CCceeEEEEcCC----------CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           93 Y-HGTFDFVFVDAD----------KDNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        93 ~-~~~~D~v~~d~~----------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      . -...|++|+.-+          ........+.+.+.++++.++++....+.|
T Consensus        72 ~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppG  125 (185)
T PF03721_consen   72 EAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPG  125 (185)
T ss_dssp             HHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTT
T ss_pred             hhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEe
Confidence            0 124688887643          112456777888899999999986665544

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=91.10  E-value=0.87  Score=39.53  Aligned_cols=93  Identities=11%  Similarity=-0.058  Sum_probs=55.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCce
Q 029836           21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGTF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~   97 (187)
                      .+|+-+|+  |..+..+++.+. .+..++.+|.+++.++.+++    .    ...++.||+.+  .+.+..     -++.
T Consensus       401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~ag-----i~~A  465 (601)
T PRK03659        401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y----GYKVYYGDATQLELLRAAG-----AEKA  465 (601)
T ss_pred             CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C----CCeEEEeeCCCHHHHHhcC-----CccC
Confidence            46666654  677777666553 24689999999998887654    2    35678888765  344331     3567


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |.+++-.+........-...+.+.|...+++
T Consensus       466 ~~vv~~~~d~~~n~~i~~~~r~~~p~~~Iia  496 (601)
T PRK03659        466 EAIVITCNEPEDTMKIVELCQQHFPHLHILA  496 (601)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence            8887655432222222223345566666654

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=91.09  E-value=5.6  Score=32.46  Aligned_cols=122  Identities=11%  Similarity=0.056  Sum_probs=65.0

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-hHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~-~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|....+=..++.....+..+-+++|+......++ .+.++.+|+..+..- .........++..|.  .++++..+..+
T Consensus        49 ~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi--~v~~vd~~d~e  125 (380)
T PRK06176         49 NPTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-LFQSGDHVLLGDDVYGGTFRLFDKVLVKNGL--SCTIIDTSDLS  125 (380)
T ss_pred             ChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-HcCCCCEEEEcCCChhHHHHHHHHHHHhcCe--EEEEcCCCCHH
Confidence            46666777777777767777888888776654443 455567787766532 233334444555444  34444333223


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  133 (187)
                      .+....     .+...+|++..+  +.....-++.+.++.+. |..+++|++..
T Consensus       126 ~l~~ai-----~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a  174 (380)
T PRK06176        126 QIKKAI-----KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFA  174 (380)
T ss_pred             HHHHhc-----CcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcc
Confidence            333322     345678886433  21122224444444444 55666777653

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=91.08  E-value=3.8  Score=32.97  Aligned_cols=97  Identities=12%  Similarity=0.153  Sum_probs=57.4

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC---CchHHHHHHhhccc
Q 029836           17 LINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG---PALPLLDQLIQDEK   92 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~~~   92 (187)
                      ..+.++||-.|+|. |..+..++++.+ ...+++++.+++..+.+++    .+. .  .++..   +..+.+....    
T Consensus       184 ~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~-~--~~i~~~~~~~~~~v~~~~----  251 (365)
T cd08278         184 PRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGA-T--HVINPKEEDLVAAIREIT----  251 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCC-c--EEecCCCcCHHHHHHHHh----
Confidence            34567888887642 556666777764 3379999998877665543    333 1  22222   1222222221    


Q ss_pred             CCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       ...+|+|+--...   ...+..+++.|+++|.++.-
T Consensus       252 -~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  284 (365)
T cd08278         252 -GGGVDYALDTTGV---PAVIEQAVDALAPRGTLALV  284 (365)
T ss_pred             -CCCCcEEEECCCC---cHHHHHHHHHhccCCEEEEe
Confidence             2468988743211   24567788899999988853

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=91.06  E-value=5.8  Score=33.03  Aligned_cols=107  Identities=12%  Similarity=0.134  Sum_probs=53.5

Q ss_pred             CCEEEEEc-ccccHHHHH--HHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe----CCchHH----HHHH
Q 029836           20 AKNTMEIG-VFTGYSLLA--TALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE----GPALPL----LDQL   87 (187)
Q Consensus        20 ~~~vLeiG-~g~G~~~~~--l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~----~d~~~~----l~~~   87 (187)
                      +..|+=+| .|.|-+|..  +|..+. .+.+|..++.++... .|.+.++..+-...+.++.    .|+...    +..+
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~  178 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA-GAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF  178 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch-hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence            34567777 577776554  343332 134666666655433 3333333322222344432    232221    2222


Q ss_pred             hhcccCCCceeEEEEcCC--Cc---ccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           88 IQDEKYHGTFDFVFVDAD--KD---NYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~--~~---~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .     ...||+|++|..  ..   .....+..+.+..+|.-++++-|..
T Consensus       179 ~-----~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~  223 (429)
T TIGR01425       179 K-----KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGS  223 (429)
T ss_pred             H-----hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccc
Confidence            1     347999999976  21   2334444555567777666655543

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.00  E-value=0.89  Score=36.14  Aligned_cols=100  Identities=17%  Similarity=0.176  Sum_probs=59.6

Q ss_pred             CCCEEEEEcc-cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGV-FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~-g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      +.+++--+|. |.|..+..+++++  +.+|+++|.+...-+.+   ++..|-+.-+.+. .|. +....+.+..  +.-.
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea---~~~LGAd~fv~~~-~d~-d~~~~~~~~~--dg~~  251 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEA---IKSLGADVFVDST-EDP-DIMKAIMKTT--DGGI  251 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHH---HHhcCcceeEEec-CCH-HHHHHHHHhh--cCcc
Confidence            4566655553 4788999999998  58999999998655544   5555553222222 222 3334432111  3333


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |-|..-     ....++.+..+||++|.+|+-.+.
T Consensus       252 ~~v~~~-----a~~~~~~~~~~lk~~Gt~V~vg~p  281 (360)
T KOG0023|consen  252 DTVSNL-----AEHALEPLLGLLKVNGTLVLVGLP  281 (360)
T ss_pred             eeeeec-----cccchHHHHHHhhcCCEEEEEeCc
Confidence            444311     234466777899999999986554

>TIGR00936 ahcY adenosylhomocysteinase

Probab=90.99  E-value=4  Score=33.72  Aligned_cols=87  Identities=11%  Similarity=0.096  Sum_probs=52.9

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ...++|+-+|+|. |......++.+  +.+|+.+|.++.....+..    .|.    ++.  +..+.+          ..
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~----~G~----~v~--~leeal----------~~  250 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAM----DGF----RVM--TMEEAA----------KI  250 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHh----cCC----EeC--CHHHHH----------hc
Confidence            4678999999874 44445555554  4789999999865433332    222    221  222221          24


Q ss_pred             eeEEEEcCCCcccHHHHH-HHHhcccCCeEEEEe
Q 029836           97 FDFVFVDADKDNYVNYHK-RLIELVKVGGVIGYD  129 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~-~~~~~L~~gG~lv~~  129 (187)
                      .|+|+.-.   .....+. .....+|+|++++..
T Consensus       251 aDVVItaT---G~~~vI~~~~~~~mK~GailiN~  281 (406)
T TIGR00936       251 GDIFITAT---GNKDVIRGEHFENMKDGAIVANI  281 (406)
T ss_pred             CCEEEECC---CCHHHHHHHHHhcCCCCcEEEEE
Confidence            58887633   2344454 367899999998853

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=90.93  E-value=3.5  Score=32.42  Aligned_cols=86  Identities=9%  Similarity=0.029  Sum_probs=48.6

Q ss_pred             EEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836           22 NTMEIGVFTGYSLLATALAI--PDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~--~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      +||-+|||  ..+.++++.+  ..-++++.+|.+.                   ...+.|.+++++.+-.-+++.+..+.
T Consensus         1 kVlVVGaG--GlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i   78 (291)
T cd01488           1 KILVIGAG--GLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKI   78 (291)
T ss_pred             CEEEECCC--HHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEeccc
Confidence            47888885  4444444333  2247888888532                   23455666776665444566666666


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKR  115 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~  115 (187)
                      .+.-..+      -.+||+|+...+.-....++..
T Consensus        79 ~~~~~~f------~~~fdvVi~alDn~~aR~~in~  107 (291)
T cd01488          79 QDKDEEF------YRQFNIIICGLDSIEARRWING  107 (291)
T ss_pred             CchhHHH------hcCCCEEEECCCCHHHHHHHHH
Confidence            5443333      3579999875543333334443

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=90.86  E-value=2  Score=33.65  Aligned_cols=79  Identities=15%  Similarity=0.104  Sum_probs=47.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~   95 (187)
                      +.++||-.| |+|+++..+++.+- .+.+|+++..++.............+..++++++.+|..+.  +..+      -.
T Consensus         3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~------~~   75 (322)
T PLN02662          3 EGKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV------VD   75 (322)
T ss_pred             CCCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH------Hc
Confidence            356888888 57888888877663 24688888776543322222221112235788999987652  3333      23


Q ss_pred             ceeEEEEcC
Q 029836           96 TFDFVFVDA  104 (187)
Q Consensus        96 ~~D~v~~d~  104 (187)
                      .+|.||.-+
T Consensus        76 ~~d~Vih~A   84 (322)
T PLN02662         76 GCEGVFHTA   84 (322)
T ss_pred             CCCEEEEeC
Confidence            578887654

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=90.85  E-value=5.9  Score=31.38  Aligned_cols=100  Identities=23%  Similarity=0.263  Sum_probs=55.6

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+..++|-.|+| .|..+..+++..+ ..++++++.++.....+++    .|...-+.....+....+..+..    ..
T Consensus       164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~----~~  234 (345)
T cd08286         164 VKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTD----GR  234 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhC----CC
Confidence            3456777777653 2334445666653 2678889888876655543    34321122222232222222221    34


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+|+|+- ..  .....++.+.+.|+++|.++.
T Consensus       235 ~~d~vld-~~--g~~~~~~~~~~~l~~~g~~v~  264 (345)
T cd08286         235 GVDVVIE-AV--GIPATFELCQELVAPGGHIAN  264 (345)
T ss_pred             CCCEEEE-CC--CCHHHHHHHHHhccCCcEEEE
Confidence            6898873 32  223457788899999999875

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=90.81  E-value=6.5  Score=32.20  Aligned_cols=104  Identities=14%  Similarity=0.174  Sum_probs=59.0

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC---CchHHHHHHhhccc
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG---PALPLLDQLIQDEK   92 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~~~   92 (187)
                      ..+.++||-.|+| .|..+..+++..+ ...++.+|.+++..+.+++    .|. .  .+...   +..+.+..+..   
T Consensus       183 ~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga-~--~v~~~~~~~~~~~v~~~~~---  251 (393)
T TIGR02819       183 VGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGC-E--TVDLSKDATLPEQIEQILG---  251 (393)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCC-e--EEecCCcccHHHHHHHHcC---
Confidence            3456788777764 3445555666653 2346677888777766654    344 2  22221   22222222210   


Q ss_pred             CCCceeEEEEcCCCc-----------ccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           93 YHGTFDFVFVDADKD-----------NYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                       ...+|+++--....           .....++.+.+++++||.+++-...
T Consensus       252 -~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       252 -EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             -CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence             23689887432211           1134788888999999999885543

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=90.80  E-value=4.5  Score=28.77  Aligned_cols=66  Identities=18%  Similarity=0.185  Sum_probs=45.2

Q ss_pred             EEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCCceeE
Q 029836           23 TMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHGTFDF   99 (187)
Q Consensus        23 vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~~D~   99 (187)
                      |+-+| ++|..+..+++.+ ..+.+|+++--+++....          ..+++++++|..+.  +....      ...|.
T Consensus         1 I~V~G-atG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~al------~~~d~   63 (183)
T PF13460_consen    1 ILVFG-ATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAAL------KGADA   63 (183)
T ss_dssp             EEEET-TTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHHH------TTSSE
T ss_pred             eEEEC-CCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhhh------hhcch
Confidence            34455 6788888877665 235799999998875543          36899999998764  23322      36788


Q ss_pred             EEEcCC
Q 029836          100 VFVDAD  105 (187)
Q Consensus       100 v~~d~~  105 (187)
                      ||.-..
T Consensus        64 vi~~~~   69 (183)
T PF13460_consen   64 VIHAAG   69 (183)
T ss_dssp             EEECCH
T ss_pred             hhhhhh
Confidence            887653

...

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=90.78  E-value=5.2  Score=32.21  Aligned_cols=81  Identities=14%  Similarity=0.130  Sum_probs=45.6

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc---------------------hHHHHHHHHHHHcCCCCceEE
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK---------------------EHYEKGLPIIQKAGVAHKIDF   75 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~---------------------~~~~~a~~~~~~~~~~~~i~~   75 (187)
                      .+..+|+-+||| .|......+...+ -++++.+|.+.                     ...+.+++.+++.+-.-+++.
T Consensus        22 L~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~  100 (339)
T PRK07688         22 LREKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA  100 (339)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence            356789999997 3433333332222 47899999863                     233455666666543334555


Q ss_pred             EeCCchH-HHHHHhhcccCCCceeEEEEcCC
Q 029836           76 REGPALP-LLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        76 ~~~d~~~-~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      +..+... .+..+      -..+|+|+.-.+
T Consensus       101 ~~~~~~~~~~~~~------~~~~DlVid~~D  125 (339)
T PRK07688        101 IVQDVTAEELEEL------VTGVDLIIDATD  125 (339)
T ss_pred             EeccCCHHHHHHH------HcCCCEEEEcCC
Confidence            5544422 22333      246899886544

>PLN02256 arogenate dehydrogenase

Probab=90.62  E-value=3.8  Score=32.42  Aligned_cols=97  Identities=12%  Similarity=-0.007  Sum_probs=54.9

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      .-++.-....+..+|.-||+|  ..+..++..+.. +.+|+++|.++. .+.+    ...|.    .. ..+..+.+   
T Consensus        25 ~~~~~~~~~~~~~kI~IIG~G--~mG~slA~~L~~~G~~V~~~d~~~~-~~~a----~~~gv----~~-~~~~~e~~---   89 (304)
T PLN02256         25 SRLQEELEKSRKLKIGIVGFG--NFGQFLAKTFVKQGHTVLATSRSDY-SDIA----AELGV----SF-FRDPDDFC---   89 (304)
T ss_pred             hHHhHhhccCCCCEEEEEeeC--HHHHHHHHHHHhCCCEEEEEECccH-HHHH----HHcCC----ee-eCCHHHHh---
Confidence            344555555567789999874  444455444321 358999998863 2222    22332    22 12222221   


Q ss_pred             hhcccCCCceeEEEEcCCCcccHHHHHHH-HhcccCCeEE
Q 029836           88 IQDEKYHGTFDFVFVDADKDNYVNYHKRL-IELVKVGGVI  126 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~~~~~~~~~~~~-~~~L~~gG~l  126 (187)
                            ....|+|++-.+.......++.+ ...++++.++
T Consensus        90 ------~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iv  123 (304)
T PLN02256         90 ------EEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLF  123 (304)
T ss_pred             ------hCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEE
Confidence                  12468999876666667777776 5667777644

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=90.57  E-value=8.7  Score=31.69  Aligned_cols=124  Identities=19%  Similarity=0.125  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEe-CCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALD-ITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd-~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      |....+=..+..+.....++-.-+|...+...+...++.+.++++.+ +--.-....++..++.|.  ...++..+-.+-
T Consensus        77 Pt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gi--e~~~vd~~~~~~  154 (409)
T KOG0053|consen   77 PTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGG--EGDFVDVDDLKK  154 (409)
T ss_pred             CchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCc--eeeeechhhHHH
Confidence            34444555666677788899999988877777777777677887776 344456677777776665  455665544433


Q ss_pred             HHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcc-cCCeEEEEeCcCCCc
Q 029836           84 LDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELV-KVGGVIGYDNTLWGG  135 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L-~~gG~lv~~~~~~~~  135 (187)
                      +....     .+.-++||+-.+  +.-....++.+.++- ++|-.+|+||++-..
T Consensus       155 ~~~~i-----~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p  204 (409)
T KOG0053|consen  155 ILKAI-----KENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP  204 (409)
T ss_pred             HHHhh-----ccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc
Confidence            33321     445899998765  211112233333333 566677777776543

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=90.54  E-value=8.6  Score=31.56  Aligned_cols=124  Identities=19%  Similarity=0.138  Sum_probs=67.2

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeC-Cch
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREG-PAL   81 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~-d~~   81 (187)
                      +|....+-..++.......++-..+|+..+...+...+.++.+|+..+..-. ............+.  ++.++.. |..
T Consensus        52 npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi--~v~~vd~~d~e  129 (388)
T PRK08861         52 NPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDF--KVQFVDQSDAA  129 (388)
T ss_pred             CchHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence            5677788888888888889988888777766665544554566776555433 23333333333232  3333332 232


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc-CCeEEEEeCcCCCc
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK-VGGVIGYDNTLWGG  135 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~~~~  135 (187)
                      ++...+      .+.-++|++..+  +.....-++.+.++.+ .|.++++|++...+
T Consensus       130 ~l~~~i------~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~  180 (388)
T PRK08861        130 ALDAAL------AKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTP  180 (388)
T ss_pred             HHHHhc------CcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccc
Confidence            232222      335688887543  2211111233333333 36677888886543

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=90.53  E-value=7  Score=32.03  Aligned_cols=123  Identities=11%  Similarity=0.084  Sum_probs=64.2

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|...++-+.++.....+..+-+++|+......+...+.++.+|+..+.... .....+..+...|.  ++.++..+..+
T Consensus        58 ~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~--~~~~vd~~d~e  135 (391)
T TIGR01328        58 NPTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGI--QVDFINMAIPE  135 (391)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence            4666677777777777777777777766554444443454567776554322 23333344444443  34454443223


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  133 (187)
                      .+....     ...-.+|++..+  +......++.+.++.+. |..+++|++..
T Consensus       136 ~l~~~i-----~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a  184 (391)
T TIGR01328       136 EVKAHI-----KDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFA  184 (391)
T ss_pred             HHHHhh-----ccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence            233221     234578887543  22111223444444443 55677777754

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=90.51  E-value=3.4  Score=28.18  Aligned_cols=79  Identities=18%  Similarity=0.140  Sum_probs=47.2

Q ss_pred             CCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEeCC
Q 029836           20 AKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFREGP   79 (187)
Q Consensus        20 ~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d   79 (187)
                      ..+|+-+||| .|......+...+ -++++.+|.+.                   ...+.+++.+.+....-+++.+..+
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            4689999995 4444333332223 47899998532                   3356677777776544566666666


Q ss_pred             c-hHHHHHHhhcccCCCceeEEEEcCC
Q 029836           80 A-LPLLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        80 ~-~~~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      . .+....+      -..+|+|+.-.+
T Consensus        81 ~~~~~~~~~------~~~~d~vi~~~d  101 (135)
T PF00899_consen   81 IDEENIEEL------LKDYDIVIDCVD  101 (135)
T ss_dssp             CSHHHHHHH------HHTSSEEEEESS
T ss_pred             ccccccccc------ccCCCEEEEecC
Confidence            6 2334444      246899986554

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07582 cystathionine gamma-lyase; Validated

Probab=90.46  E-value=6  Score=32.05  Aligned_cols=118  Identities=11%  Similarity=0.026  Sum_probs=66.3

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchH-HHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEH-YEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~-~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      .|...++-+.++... +...+-+++|+..+...+...+.++.+|+..+..... ...++..++..|.  ++.++..+.. 
T Consensus        50 ~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v~~~~~-  125 (366)
T PRK07582         50 NPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREAPTAGM-  125 (366)
T ss_pred             CccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEECCCCh-
Confidence            456677777777776 6677778888876655554445556678887765533 3344444555554  4444443321 


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc-CCeEEEEeCcC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK-VGGVIGYDNTL  132 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~  132 (187)
                       ....      ....++|++..+  +......++.+.++.+ .|.++++|++.
T Consensus       126 -~~~~------~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~  171 (366)
T PRK07582        126 -AEAA------LAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTT  171 (366)
T ss_pred             -HHHh------ccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence             1111      235678887644  2211223444444444 46678888875

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=90.20  E-value=0.43  Score=33.22  Aligned_cols=89  Identities=15%  Similarity=0.148  Sum_probs=52.1

Q ss_pred             EEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC---------chHHHHHHhhccc
Q 029836           23 TMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP---------ALPLLDQLIQDEK   92 (187)
Q Consensus        23 vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d---------~~~~l~~~~~~~~   92 (187)
                      |+-+|+  |..+..++..+. .+.+|+.+...+ .++.    ++..++    ++...+         ........     
T Consensus         1 I~I~G~--GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~----~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~-----   64 (151)
T PF02558_consen    1 ILIIGA--GAIGSLYAARLAQAGHDVTLVSRSP-RLEA----IKEQGL----TITGPDGDETVQPPIVISAPSAD-----   64 (151)
T ss_dssp             EEEEST--SHHHHHHHHHHHHTTCEEEEEESHH-HHHH----HHHHCE----EEEETTEEEEEEEEEEESSHGHH-----
T ss_pred             CEEECc--CHHHHHHHHHHHHCCCceEEEEccc-cHHh----hhheeE----EEEecccceecccccccCcchhc-----
Confidence            345555  555555554441 257899998877 4433    333332    111111         00000011     


Q ss_pred             CCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                       .+.+|+||+-....+....++.+.+.+.++..+++
T Consensus        65 -~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~   99 (151)
T PF02558_consen   65 -AGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVS   99 (151)
T ss_dssp             -HSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred             -cCCCcEEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence             46899999987666778899999999999977764

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=90.19  E-value=8  Score=30.65  Aligned_cols=99  Identities=18%  Similarity=0.099  Sum_probs=53.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP--DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~--~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++|+-+|+  |..+..++..+.  ...+|+.++.+++......+   +.+.    ...  +..+ +...      -.
T Consensus       176 l~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~---~~g~----~~~--~~~~-~~~~------l~  237 (311)
T cd05213         176 LKGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAK---ELGG----NAV--PLDE-LLEL------LN  237 (311)
T ss_pred             ccCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH---HcCC----eEE--eHHH-HHHH------Hh
Confidence            36789999988  555554444332  23679999998765433222   2232    121  1212 2222      13


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      ..|+||.-.....+...+....+..+.++.+++|=..+.
T Consensus       238 ~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPr  276 (311)
T cd05213         238 EADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPR  276 (311)
T ss_pred             cCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            579999876544443444444433334677887765543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=90.16  E-value=5.3  Score=31.46  Aligned_cols=99  Identities=15%  Similarity=0.131  Sum_probs=57.9

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc-hHHHHHHhhcccC
Q 029836           16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA-LPLLDQLIQDEKY   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~   93 (187)
                      ...++.+||-.|+| .|..+..+++... +.++++++.+++..+.+++    .|. +.  ++.... .++...+...   
T Consensus       159 ~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~-~~--v~~~~~~~~~~~~v~~~---  227 (338)
T PRK09422        159 GIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGA-DL--TINSKRVEDVAKIIQEK---  227 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCC-cE--EecccccccHHHHHHHh---
Confidence            34456788888853 3445555666532 4689999999887776643    343 22  122111 1111222111   


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+.+|.++++..   ....++.+++.|+++|.++.
T Consensus       228 ~~~~d~vi~~~~---~~~~~~~~~~~l~~~G~~v~  259 (338)
T PRK09422        228 TGGAHAAVVTAV---AKAAFNQAVDAVRAGGRVVA  259 (338)
T ss_pred             cCCCcEEEEeCC---CHHHHHHHHHhccCCCEEEE
Confidence            235787776643   24567888899999998875

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=90.11  E-value=6  Score=30.07  Aligned_cols=85  Identities=12%  Similarity=0.052  Sum_probs=45.7

Q ss_pred             EEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836           22 NTMEIGVFTGYSLLATALAI--PDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~--~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      +||-+|+|  ..+.++++.+  ..-++++.+|.+.                   ...+.+.+++++.+-.-+++.+..+.
T Consensus         1 kVlvvG~G--GlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i   78 (234)
T cd01484           1 KVLLVGAG--GIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV   78 (234)
T ss_pred             CEEEECCC--HHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence            47778874  4444444433  1247888888643                   23455566666655434555566555


Q ss_pred             h---HHHHHHhhcccCCCceeEEEEcCCCcccHHHHH
Q 029836           81 L---PLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHK  114 (187)
Q Consensus        81 ~---~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~  114 (187)
                      .   ++...+      -.+||+|+...+......++.
T Consensus        79 ~~~~~~~~~f------~~~~DvVi~a~Dn~~aR~~ln  109 (234)
T cd01484          79 GPEQDFNDTF------FEQFHIIVNALDNIIARRYVN  109 (234)
T ss_pred             ChhhhchHHH------HhCCCEEEECCCCHHHHHHHH
Confidence            2   222223      357999997654333333343

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.07  E-value=5.5  Score=30.94  Aligned_cols=93  Identities=20%  Similarity=0.205  Sum_probs=52.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHH-------HcCCC---------CceEEEeCCchHH
Q 029836           21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQ-------KAGVA---------HKIDFREGPALPL   83 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~-------~~~~~---------~~i~~~~~d~~~~   83 (187)
                      ++|--||+|  ..+..++..+. .+.+|+.+|++++.++.+++.++       +.+..         .++++. .|.   
T Consensus         4 ~kI~VIG~G--~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~---   77 (282)
T PRK05808          4 QKIGVIGAG--TMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDL---   77 (282)
T ss_pred             cEEEEEccC--HHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH---
Confidence            357778875  33333332221 14689999999998876553332       22211         122221 221   


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcc--cHHHHHHHHhcccCCeEEE
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDN--YVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~--~~~~~~~~~~~L~~gG~lv  127 (187)
                       ..+       ...|+|+.-.....  ....++.+.+.++++.+++
T Consensus        78 -~~~-------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~  115 (282)
T PRK05808         78 -DDL-------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILA  115 (282)
T ss_pred             -HHh-------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEE
Confidence             111       34699998654322  2578888888899888774

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=90.02  E-value=2.7  Score=32.69  Aligned_cols=85  Identities=12%  Similarity=0.119  Sum_probs=48.4

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836           22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v  100 (187)
                      +|.-||+|  ..+..++..+. .+.+|+++|.+++..+.+.+    .+.   +.....+. +.          -...|+|
T Consensus         2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~----~g~---~~~~~~~~-~~----------~~~aDlV   61 (279)
T PRK07417          2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIE----RGL---VDEASTDL-SL----------LKDCDLV   61 (279)
T ss_pred             eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CCC---cccccCCH-hH----------hcCCCEE
Confidence            46667764  44444443332 14689999999877766543    222   11111111 11          1346899


Q ss_pred             EEcCCCcccHHHHHHHHhcccCCeEE
Q 029836          101 FVDADKDNYVNYHKRLIELVKVGGVI  126 (187)
Q Consensus       101 ~~d~~~~~~~~~~~~~~~~L~~gG~l  126 (187)
                      ++-.+.......++.+.+.++++.++
T Consensus        62 ilavp~~~~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         62 ILALPIGLLLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             EEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence            88776555666777777777776544

>PRK06460 hypothetical protein; Provisional

Probab=89.97  E-value=9.3  Score=31.10  Aligned_cols=123  Identities=16%  Similarity=0.149  Sum_probs=62.1

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-chHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDIT-KEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|...++-+.++.....+..+-+++|...+...+...+.++.+|+..+.. ..........++..|.  ++.+...+...
T Consensus        44 ~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~--~v~~~~~~~~~  121 (376)
T PRK06460         44 NPTVLELTKKIVELENAEMGVAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGV--NVDASNPGSDN  121 (376)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCc--EEEEECCCCHH
Confidence            45566666677776665555666666654444333334445666654321 1233333444555554  35554433333


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  133 (187)
                      .++.+.     .....+|++..+  +.....-++.+.++.+. |.++++|++..
T Consensus       122 ~l~~~~-----~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~  170 (376)
T PRK06460        122 IIEKAK-----SKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFS  170 (376)
T ss_pred             HHHHhc-----CCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcC
Confidence            444332     234578887654  22222222344444444 56777787653

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=89.85  E-value=7.1  Score=29.63  Aligned_cols=82  Identities=18%  Similarity=0.138  Sum_probs=45.0

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEe
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFRE   77 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~   77 (187)
                      .+..+|+-+||| .|......+...+ -++++.+|.+.                   ...+.+++++.+.+-.-+++.+.
T Consensus         9 L~~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~   87 (231)
T cd00755           9 LRNAHVAVVGLGGVGSWAAEALARSG-VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE   87 (231)
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence            356789999996 4554444433322 47899999653                   23345566666654333444444


Q ss_pred             CCch-HHHHHHhhcccCCCceeEEEEcCC
Q 029836           78 GPAL-PLLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        78 ~d~~-~~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      .... +....+.     ...||+|+.-.+
T Consensus        88 ~~i~~~~~~~l~-----~~~~D~VvdaiD  111 (231)
T cd00755          88 EFLTPDNSEDLL-----GGDPDFVVDAID  111 (231)
T ss_pred             eecCHhHHHHHh-----cCCCCEEEEcCC
Confidence            3332 1223332     346999886543

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=89.82  E-value=2.4  Score=33.09  Aligned_cols=34  Identities=26%  Similarity=0.203  Sum_probs=27.2

Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..+|+||+-.........++.+.+.++++.+++.
T Consensus        67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~  100 (305)
T PRK12921         67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP  100 (305)
T ss_pred             CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence            5789999887666778888888888888887663

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=89.80  E-value=5.5  Score=32.48  Aligned_cols=81  Identities=14%  Similarity=0.090  Sum_probs=46.1

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCC-------------------chHHHHHHHHHHHcCCCCceEEEe
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDIT-------------------KEHYEKGLPIIQKAGVAHKIDFRE   77 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~-------------------~~~~~~a~~~~~~~~~~~~i~~~~   77 (187)
                      .+..+|+-+||| .|......+...+ -++++.+|.+                   ....+.+.+.+++.+-.-+++...
T Consensus       133 l~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~  211 (376)
T PRK08762        133 LLEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ  211 (376)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            356789999997 3444444333333 4789999987                   345566667776654322344444


Q ss_pred             CCchH-HHHHHhhcccCCCceeEEEEcCC
Q 029836           78 GPALP-LLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        78 ~d~~~-~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      ....+ .+..+      -..+|+|+...+
T Consensus       212 ~~~~~~~~~~~------~~~~D~Vv~~~d  234 (376)
T PRK08762        212 ERVTSDNVEAL------LQDVDVVVDGAD  234 (376)
T ss_pred             ccCChHHHHHH------HhCCCEEEECCC
Confidence            33321 22222      246898886544

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=89.77  E-value=11  Score=31.48  Aligned_cols=86  Identities=9%  Similarity=0.041  Sum_probs=51.3

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ..++++-+|+|. |......++.+  +.+|+.+|.++.....+..    .|.    ++  .+..+.+          ...
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~----~G~----~v--~~l~eal----------~~a  268 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAM----DGF----RV--MTMEEAA----------ELG  268 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHh----cCC----Ee--cCHHHHH----------hCC
Confidence            678999999863 33333344444  4689999999876543322    122    22  1222221          357


Q ss_pred             eEEEEcCCCcccHHHHH-HHHhcccCCeEEEEe
Q 029836           98 DFVFVDADKDNYVNYHK-RLIELVKVGGVIGYD  129 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~-~~~~~L~~gG~lv~~  129 (187)
                      |+|+...   .....+. .....+|+|++++..
T Consensus       269 DVVI~aT---G~~~vI~~~~~~~mK~GailiNv  298 (425)
T PRK05476        269 DIFVTAT---GNKDVITAEHMEAMKDGAILANI  298 (425)
T ss_pred             CEEEECC---CCHHHHHHHHHhcCCCCCEEEEc
Confidence            9887643   2234554 567889999988753

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=89.70  E-value=9.4  Score=31.19  Aligned_cols=124  Identities=17%  Similarity=0.134  Sum_probs=63.1

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchH-HHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEH-YEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~-~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|...++-+.++....+..++-..+|+..+...+...+.++.+|+..+..-.. ...........+.  ++.+...+..+
T Consensus        50 ~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~--~v~~~d~~d~~  127 (382)
T TIGR02080        50 NPTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCF--RVLFVDQGDEQ  127 (382)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCe--EEEEECCCCHH
Confidence            45566677777777667778766666665555444444545677766665442 3333332222222  34444332223


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc-CCeEEEEeCcCCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK-VGGVIGYDNTLWG  134 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~~~  134 (187)
                      .+....     .....+|++..+  +.....-++.+.++.+ .|.++++|++...
T Consensus       128 ~l~~ai-----~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~  177 (382)
T TIGR02080       128 ALRAAL-----AQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLS  177 (382)
T ss_pred             HHHHhc-----CcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcc
Confidence            233322     334578887543  2222122334444444 3667788887643

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=89.69  E-value=7  Score=31.42  Aligned_cols=101  Identities=22%  Similarity=0.359  Sum_probs=56.1

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC--CchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG--PALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~~l~~~~~~~~~   93 (187)
                      ..++.+||-+|+| .|..+..+++..+ ...+++++.+++..+.+++    .|...-+.....  +..+.+..+.     
T Consensus       181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~-----  250 (365)
T cd05279         181 VTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT-----  250 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh-----
Confidence            3456788888763 3334455666653 2358888888877666533    343211221122  1112222221     


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhccc-CCeEEEEeC
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVK-VGGVIGYDN  130 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~-~gG~lv~~~  130 (187)
                      .+.+|+|+--.   .....+...++.|+ ++|.++.-.
T Consensus       251 ~~~~d~vid~~---g~~~~~~~~~~~l~~~~G~~v~~g  285 (365)
T cd05279         251 DGGVDYAFEVI---GSADTLKQALDATRLGGGTSVVVG  285 (365)
T ss_pred             CCCCcEEEECC---CCHHHHHHHHHHhccCCCEEEEEe
Confidence            34689888422   12356677788899 999988643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=89.66  E-value=1.1  Score=34.54  Aligned_cols=74  Identities=18%  Similarity=0.244  Sum_probs=45.2

Q ss_pred             HHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCcccHHHHH
Q 029836           35 LATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHK  114 (187)
Q Consensus        35 ~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~  114 (187)
                      ..+.+.. ...+|+++|.++..++.|++    .|....   ...+ .   ..+       ...|+|++..+......+++
T Consensus         3 ~aL~~~g-~~~~v~g~d~~~~~~~~a~~----~g~~~~---~~~~-~---~~~-------~~~DlvvlavP~~~~~~~l~   63 (258)
T PF02153_consen    3 LALRKAG-PDVEVYGYDRDPETLEAALE----LGIIDE---ASTD-I---EAV-------EDADLVVLAVPVSAIEDVLE   63 (258)
T ss_dssp             HHHHHTT-TTSEEEEE-SSHHHHHHHHH----TTSSSE---EESH-H---HHG-------GCCSEEEE-S-HHHHHHHHH
T ss_pred             HHHHhCC-CCeEEEEEeCCHHHHHHHHH----CCCeee---ccCC-H---hHh-------cCCCEEEEcCCHHHHHHHHH
Confidence            4444443 36899999999998776643    343221   1111 1   222       35699999887777888888


Q ss_pred             HHHhcccCCeEEE
Q 029836          115 RLIELVKVGGVIG  127 (187)
Q Consensus       115 ~~~~~L~~gG~lv  127 (187)
                      .+.+.+++|+++.
T Consensus        64 ~~~~~~~~~~iv~   76 (258)
T PF02153_consen   64 EIAPYLKPGAIVT   76 (258)
T ss_dssp             HHHCGS-TTSEEE
T ss_pred             HhhhhcCCCcEEE
Confidence            8888888887765

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK08324 short chain dehydrogenase; Validated

Probab=89.61  E-value=8  Score=34.20  Aligned_cols=82  Identities=16%  Similarity=0.123  Sum_probs=47.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cCCC
Q 029836           20 AKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KYHG   95 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~~~   95 (187)
                      .+++|-+|+ +|.++..+++.+. .+.+|+.++.++...+.+.+.+...   .++.++.+|..+.  +....+.. ...+
T Consensus       422 gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g  497 (681)
T PRK08324        422 GKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG  497 (681)
T ss_pred             CCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            468888884 4455555554432 2578999999987776655544332   4677777775431  22211110 0135


Q ss_pred             ceeEEEEcCC
Q 029836           96 TFDFVFVDAD  105 (187)
Q Consensus        96 ~~D~v~~d~~  105 (187)
                      .+|+||....
T Consensus       498 ~iDvvI~~AG  507 (681)
T PRK08324        498 GVDIVVSNAG  507 (681)
T ss_pred             CCCEEEECCC
Confidence            7899987653

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=89.57  E-value=3.1  Score=32.55  Aligned_cols=89  Identities=20%  Similarity=0.186  Sum_probs=48.2

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           21 KNTMEIGVFTGYSLLATALAIPD---DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~---~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+|+-+|.  |..+.+++..+..   ...+++.|.+....+.+.+    .|..+.    ..+.  .....      ....
T Consensus         4 ~~v~IvG~--GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d~----~~~~--~~~~~------~~~a   65 (279)
T COG0287           4 MKVGIVGL--GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVIDE----LTVA--GLAEA------AAEA   65 (279)
T ss_pred             cEEEEECC--chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCcccc----cccc--hhhhh------cccC
Confidence            46677765  5555555544432   2456777777655544432    122110    0011  10111      2356


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |+|++.-+......+++++.+.|++|..+.
T Consensus        66 D~VivavPi~~~~~~l~~l~~~l~~g~iv~   95 (279)
T COG0287          66 DLVIVAVPIEATEEVLKELAPHLKKGAIVT   95 (279)
T ss_pred             CEEEEeccHHHHHHHHHHhcccCCCCCEEE
Confidence            888887776667777777777777776664

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=89.47  E-value=4.7  Score=31.98  Aligned_cols=100  Identities=17%  Similarity=0.174  Sum_probs=56.6

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc---hHHHHHHhhcc
Q 029836           17 LINAKNTMEIGVFT-GYSLLATALAIPDDGK-ILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA---LPLLDQLIQDE   91 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~-v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~l~~~~~~~   91 (187)
                      ..++.++|-.|+|. |..+..+++..+  .+ +++++.+++..+.+++    .+...-+.....+.   .+.+.....  
T Consensus       160 ~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~~--  231 (343)
T cd05285         160 VRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELLG--  231 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHhC--
Confidence            44567888777654 556677777753  44 8888888776665543    23311111111121   111222210  


Q ss_pred             cCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           92 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                        ...+|+|+-...   -...+...++.|+++|.++.-
T Consensus       232 --~~~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~  264 (343)
T cd05285         232 --GKGPDVVIECTG---AESCIQTAIYATRPGGTVVLV  264 (343)
T ss_pred             --CCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence              245898885322   123567778899999988753

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK05599 hypothetical protein; Provisional

Probab=89.35  E-value=4.7  Score=30.45  Aligned_cols=78  Identities=12%  Similarity=0.033  Sum_probs=49.8

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH------HHHHhhcccCCC
Q 029836           22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL------LDQLIQDEKYHG   95 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~~~~~~~~~~   95 (187)
                      ++|-.|++. .++..+++.+..+.+|+.++.+++.++.+.+.++..+. .++.++..|..+.      ...+.+.   .+
T Consensus         2 ~vlItGas~-GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~---~g   76 (246)
T PRK05599          2 SILILGGTS-DIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQEL---AG   76 (246)
T ss_pred             eEEEEeCcc-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHh---cC
Confidence            577777654 45666666665568899999888877777666765542 3467777775432      2222211   36


Q ss_pred             ceeEEEEcC
Q 029836           96 TFDFVFVDA  104 (187)
Q Consensus        96 ~~D~v~~d~  104 (187)
                      ..|+++...
T Consensus        77 ~id~lv~na   85 (246)
T PRK05599         77 EISLAVVAF   85 (246)
T ss_pred             CCCEEEEec
Confidence            789998654

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=89.34  E-value=6.5  Score=31.01  Aligned_cols=95  Identities=21%  Similarity=0.265  Sum_probs=56.1

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      +..+||..|+|. |..+..+++..+ ..++++++.+++..+.+++    .+. +  .++..+... +......   .+.+
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~----~g~-~--~vi~~~~~~-~~~~~~~---~~~v  232 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA----MGA-D--ETVNLARDP-LAAYAAD---KGDF  232 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCC-C--EEEcCCchh-hhhhhcc---CCCc
Confidence            567888888764 556667777753 2378999988877665443    332 1  222222111 2222111   2458


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+++--..   -...++..++.|+++|.++.
T Consensus       233 d~vld~~g---~~~~~~~~~~~L~~~G~~v~  260 (339)
T cd08232         233 DVVFEASG---APAALASALRVVRPGGTVVQ  260 (339)
T ss_pred             cEEEECCC---CHHHHHHHHHHHhcCCEEEE
Confidence            99885322   13456778899999999885

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=89.31  E-value=4.9  Score=33.32  Aligned_cols=92  Identities=11%  Similarity=0.078  Sum_probs=55.8

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCcee
Q 029836           22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGTFD   98 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~D   98 (187)
                      +|+-+|+  |..+..+++.+. .+..++.+|.+++.++.+++.       ..++++.+|+.+  .+....     -+.+|
T Consensus         2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~~-----~~~a~   67 (453)
T PRK09496          2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-------LDVRTVVGNGSSPDVLREAG-----AEDAD   67 (453)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cCEEEEEeCCCCHHHHHHcC-----CCcCC
Confidence            5777776  888888887664 246899999999877655431       246777888754  233221     35788


Q ss_pred             EEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           99 FVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      .|++..........+....+.+.+.-.++
T Consensus        68 ~vi~~~~~~~~n~~~~~~~r~~~~~~~ii   96 (453)
T PRK09496         68 LLIAVTDSDETNMVACQIAKSLFGAPTTI   96 (453)
T ss_pred             EEEEecCChHHHHHHHHHHHHhcCCCeEE
Confidence            88876543333333434444553333333

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=89.28  E-value=0.72  Score=37.67  Aligned_cols=59  Identities=14%  Similarity=0.214  Sum_probs=46.4

Q ss_pred             CceEEEeCCchHHHHHHhhcccCCCceeEEEE-cCC----CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           71 HKIDFREGPALPLLDQLIQDEKYHGTFDFVFV-DAD----KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        71 ~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~-d~~----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      +++++++++..+++.+..     .+++|.+++ |..    .+...+.++.+.+.++|||.+++-++...
T Consensus       275 drv~i~t~si~~~L~~~~-----~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~  338 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRLP-----PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP  338 (380)
T ss_pred             CeEEEEeccHHHHHHhCC-----CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence            799999999999988763     578998864 432    45567788888999999999998665543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=89.21  E-value=1.4  Score=38.39  Aligned_cols=92  Identities=15%  Similarity=0.012  Sum_probs=53.8

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCce
Q 029836           21 KNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGTF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~   97 (187)
                      .+|+-+|+  |..+..+++.+.. +..++.+|.+++.++.+++        ....++.||+.+  .+.+..     -++.
T Consensus       401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~ag-----i~~A  465 (621)
T PRK03562        401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESAG-----AAKA  465 (621)
T ss_pred             CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--------cCCeEEEEeCCCHHHHHhcC-----CCcC
Confidence            57888776  5555555554432 4689999999998887765        235678888765  344321     3577


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |.+++-.+..+.....-...+.+.|.-.++
T Consensus       466 ~~vvv~~~d~~~n~~i~~~ar~~~p~~~ii  495 (621)
T PRK03562        466 EVLINAIDDPQTSLQLVELVKEHFPHLQII  495 (621)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHhCCCCeEE
Confidence            888765542222222222233445554444

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=89.16  E-value=6.6  Score=28.21  Aligned_cols=66  Identities=20%  Similarity=0.083  Sum_probs=34.4

Q ss_pred             ceeEEEEcCC--------Cc-------ccHHHHHHHHhcccCCe--EEEE-eCcCCCccccCCCCCCchhhhhhHHHHHH
Q 029836           96 TFDFVFVDAD--------KD-------NYVNYHKRLIELVKVGG--VIGY-DNTLWGGSVVAPPDADLDEHFLYLRDFVQ  157 (187)
Q Consensus        96 ~~D~v~~d~~--------~~-------~~~~~~~~~~~~L~~gG--~lv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (187)
                      +.|+|++|+-        ..       .....+..+...|+..+  ++++ +++.++...       +....+...+..-
T Consensus        73 ~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsnEvG~g~vp-------~~~~~r~f~d~lG  145 (169)
T cd00544          73 PGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNEVGLGVVP-------ENALGRRFRDELG  145 (169)
T ss_pred             CCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEECCcCCCCCC-------CCHHHHHHHHHHH
Confidence            5789999963        11       11233333445544333  3333 444444322       2233456667777


Q ss_pred             HHHHHHhcCCC
Q 029836          158 ELNKALAVDPR  168 (187)
Q Consensus       158 ~~~~~~~~~~~  168 (187)
                      .+++.+....+
T Consensus       146 ~lnq~la~~ad  156 (169)
T cd00544         146 RLNQRLAALAD  156 (169)
T ss_pred             HHHHHHHHHCC
Confidence            77888876655

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=89.11  E-value=11  Score=31.08  Aligned_cols=123  Identities=15%  Similarity=0.131  Sum_probs=63.6

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHH-HHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHY-EKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~-~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|...++=+.++.....+..+-+++|...+...+...+.++.+|++.+..-... ...+..++..|.  ++.++.....+
T Consensus        63 ~p~~~~le~~lA~l~g~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi--~v~~vd~~d~e  140 (398)
T PRK08249         63 NPTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGV--DVTLCETGDHE  140 (398)
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCe--EEEEcCCCCHH
Confidence            466667777777777777888888776655555433444456777766544332 222333444444  34433322222


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc-CCeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK-VGGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~~  133 (187)
                      .+....     .+.-.+|++..+  +......++.+.++.+ .|.++++|++..
T Consensus       141 ~l~~~i-----~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a  189 (398)
T PRK08249        141 QIEAEI-----AKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFA  189 (398)
T ss_pred             HHHHhc-----CCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcC
Confidence            233322     234578887543  2111112333444443 456777777754

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=88.92  E-value=11  Score=30.50  Aligned_cols=123  Identities=16%  Similarity=0.157  Sum_probs=64.6

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchH-HHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEH-YEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~-~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|...++-+.++........+-+++|+......+...+.++.+|++.+..-.. ....+...+..|.  ++.++..+..+
T Consensus        39 ~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~--~~~~v~~~d~~  116 (369)
T cd00614          39 NPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGI--EVTFVDPDDPE  116 (369)
T ss_pred             ChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCe--EEEEeCCCCHH
Confidence            45666777777777766777777777665555544444445566665433322 2333333444443  45555444333


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  133 (187)
                      .+....     .....+|++...  +.....-++.+.++.++ |..+++|++.-
T Consensus       117 ~l~~~i-----~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~  165 (369)
T cd00614         117 ALEAAI-----KPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFA  165 (369)
T ss_pred             HHHHhc-----CCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence            333332     234578887643  22222224445444454 56777777643

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=88.89  E-value=12  Score=30.72  Aligned_cols=122  Identities=13%  Similarity=0.124  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-hHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~-~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|...++=+.++.....+.++-..+|+......+...+.++.+|+..+... .........+...|.  ++.++..+..+
T Consensus        60 ~p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~--~v~~vd~~d~~  137 (390)
T PRK08133         60 NPTVTMFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGI--ETTFVDLTDLD  137 (390)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCc--EEEEECCCCHH
Confidence            455666667777777777777777666555444433344456776655433 233344445555554  55665544333


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTL  132 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~  132 (187)
                      .+....     .+.-.+|++..+  +......++.+.++.++ |-.+++|++.
T Consensus       138 ~l~~~i-----~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~  185 (390)
T PRK08133        138 AWRAAV-----RPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCF  185 (390)
T ss_pred             HHHHhc-----CcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCC
Confidence            333332     234568887533  22222223444444444 5567777764

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=88.87  E-value=4.5  Score=34.74  Aligned_cols=87  Identities=14%  Similarity=0.077  Sum_probs=61.0

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhh
Q 029836           14 LLKLINAKNTMEIGVFTGYSLLATALAIP--DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQ   89 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~--~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~   89 (187)
                      +.....+++||-.| |+|.++.++.+.+-  ...+++.+|.++..+....+.++..-...++.++.||..+.  +.....
T Consensus       244 i~~~~~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~  322 (588)
T COG1086         244 IGAMLTGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAME  322 (588)
T ss_pred             HHhHcCCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHh
Confidence            34456788999888 66887777665432  13789999999999888887777642246788899988763  233321


Q ss_pred             cccCCCceeEEEEcCC
Q 029836           90 DEKYHGTFDFVFVDAD  105 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~  105 (187)
                          .-+.|.||.-+.
T Consensus       323 ----~~kvd~VfHAAA  334 (588)
T COG1086         323 ----GHKVDIVFHAAA  334 (588)
T ss_pred             ----cCCCceEEEhhh
Confidence                346899997654

>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species

Probab=88.80  E-value=1.1  Score=34.02  Aligned_cols=46  Identities=17%  Similarity=0.096  Sum_probs=31.5

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHH
Q 029836           13 MLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG   60 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a   60 (187)
                      .++....-+++|-+|++.  ++.++|..+...+.|+.+|++|......
T Consensus        35 ~~le~~~~k~~lI~G~Yl--tG~~iA~~L~~~~eV~lvDI~p~lk~ll   80 (252)
T PF06690_consen   35 YWLEGEEFKQALIFGAYL--TGNFIASALSKKCEVTLVDIHPHLKELL   80 (252)
T ss_pred             HHhcccccceEEEEEEEe--ehHHHHHHhccCceEEEEeCcHHHHHHh
Confidence            333334445999999763  4456677665456999999999776543

The function of this family is unknown.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=88.76  E-value=7.8  Score=28.55  Aligned_cols=80  Identities=15%  Similarity=0.143  Sum_probs=46.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEE
Q 029836           18 INAKNTMEIGVFTGYSLLATALAI--PDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFR   76 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~--~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~   76 (187)
                      .+..+|+-+|||.  .+.++++.+  ..-++++.+|.+.                   ...+.+++++++.+-.-+++..
T Consensus        19 L~~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~   96 (197)
T cd01492          19 LRSARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVD   96 (197)
T ss_pred             HHhCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEE
Confidence            3567899999864  444444433  2247899998652                   2245566667766543445555


Q ss_pred             eCCchHHHHHHhhcccCCCceeEEEEcCC
Q 029836           77 EGPALPLLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        77 ~~d~~~~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      .....+..+.+      -..||+|+...+
T Consensus        97 ~~~~~~~~~~~------~~~~dvVi~~~~  119 (197)
T cd01492          97 TDDISEKPEEF------FSQFDVVVATEL  119 (197)
T ss_pred             ecCccccHHHH------HhCCCEEEECCC
Confidence            44333222333      357899987554

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=88.69  E-value=11  Score=30.23  Aligned_cols=96  Identities=13%  Similarity=0.176  Sum_probs=54.4

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      +..+++-+|+| .|..+..+++..  +.++++++.+++....+.   +..|. +. .+...+. +.+...      ...+
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~---~~~Ga-~~-~i~~~~~-~~~~~~------~~~~  245 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEAL---EHLGA-DD-YLVSSDA-AEMQEA------ADSL  245 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHH---HhcCC-cE-EecCCCh-HHHHHh------cCCC
Confidence            56788877653 444556677765  467888888776544433   33454 21 1111121 222222      2358


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |++|--..   ....++.+.+.++++|.++.-..
T Consensus       246 D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        246 DYIIDTVP---VFHPLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             cEEEECCC---chHHHHHHHHHhccCCEEEEECC
Confidence            88874321   23456777889999998886443

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=88.68  E-value=6.7  Score=31.48  Aligned_cols=96  Identities=21%  Similarity=0.229  Sum_probs=54.6

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC---CchHHHHHHhhcccC
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG---PALPLLDQLIQDEKY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~~~~   93 (187)
                      .+..+||-.|+| .|..+..+++..+ ...+++++.+++..+.+++    .+..   .++..   +..+.+.....    
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~~~----  253 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDVRDEKLAKAKE----LGAT---HTVNAAKEDAVAAIREITG----  253 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCc---eEecCCcccHHHHHHHHhC----
Confidence            456678777654 4555566676653 2348889888876665533    3331   22222   22222222211    


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ...+|+|+--.. .  ......+++.|+++|.++.
T Consensus       254 ~~~~d~vld~vg-~--~~~~~~~~~~l~~~G~~v~  285 (367)
T cd08263         254 GRGVDVVVEALG-K--PETFKLALDVVRDGGRAVV  285 (367)
T ss_pred             CCCCCEEEEeCC-C--HHHHHHHHHHHhcCCEEEE
Confidence            346899984221 1  1356778899999998875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.64  E-value=6.5  Score=30.64  Aligned_cols=95  Identities=18%  Similarity=0.122  Sum_probs=53.1

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc--------CC---------CCceEEEeCCchHH
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA--------GV---------AHKIDFREGPALPL   83 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~--------~~---------~~~i~~~~~d~~~~   83 (187)
                      ++|.-||+|.=..++...-.. .+.+|+.+|.+++.++.+++.++..        ..         ..++++. .|..+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a   81 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA   81 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence            468888886433222221111 2568999999999888877664321        11         0123222 222111


Q ss_pred             HHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHhcccCCeEEE
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~~L~~gG~lv  127 (187)
                                -..-|+|+.-.+.  +....+++.+.+.++++.+|+
T Consensus        82 ----------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~  117 (287)
T PRK08293         82 ----------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA  117 (287)
T ss_pred             ----------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE
Confidence                      1345888876542  234567777777777777654

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=88.59  E-value=2.8  Score=33.13  Aligned_cols=34  Identities=9%  Similarity=0.054  Sum_probs=26.6

Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..+|+||+--...+..+.++.+.+++++++.++.
T Consensus        71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~  104 (313)
T PRK06249         71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL  104 (313)
T ss_pred             CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence            5789999876655567788888888999987763

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=88.58  E-value=3.9  Score=32.15  Aligned_cols=79  Identities=16%  Similarity=0.116  Sum_probs=47.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~   95 (187)
                      +.+++|-.| |+|.++..+++.+- .+.+|+++..++.............+...+++++.+|..+.  +..+.      .
T Consensus         4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~------~   76 (325)
T PLN02989          4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI------D   76 (325)
T ss_pred             CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH------c
Confidence            357888888 67888888877653 34688777666554333322222222235788888887653  33332      3


Q ss_pred             ceeEEEEcC
Q 029836           96 TFDFVFVDA  104 (187)
Q Consensus        96 ~~D~v~~d~  104 (187)
                      ..|.|+..+
T Consensus        77 ~~d~vih~A   85 (325)
T PLN02989         77 GCETVFHTA   85 (325)
T ss_pred             CCCEEEEeC
Confidence            578887654

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=88.56  E-value=9.3  Score=29.20  Aligned_cols=80  Identities=16%  Similarity=0.128  Sum_probs=44.8

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEeC
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFREG   78 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~~   78 (187)
                      +..+|+-+|+| .|......+...+ -++++.+|.+.                   ...+.+++.+++.+-.-+++.+..
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~  109 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA  109 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence            56799999996 3443333333322 46888887532                   234555666766554334555554


Q ss_pred             CchH-HHHHHhhcccCCCceeEEEEcCC
Q 029836           79 PALP-LLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        79 d~~~-~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      ...+ ....+      -..||+|+.-.+
T Consensus       110 ~i~~~~~~~~------~~~~DiVi~~~D  131 (245)
T PRK05690        110 RLDDDELAAL------IAGHDLVLDCTD  131 (245)
T ss_pred             cCCHHHHHHH------HhcCCEEEecCC
Confidence            4322 22233      247899886554

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=88.50  E-value=11  Score=29.78  Aligned_cols=87  Identities=16%  Similarity=0.185  Sum_probs=50.1

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+++++-+|.|. |......++.+  +.+|+.+|.++...+.++    ..|.    ++.  +. +.++..      -..+
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~----~~G~----~~~--~~-~~l~~~------l~~a  211 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARIT----EMGL----SPF--HL-SELAEE------VGKI  211 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----HcCC----eee--cH-HHHHHH------hCCC
Confidence            578999999863 22333344443  469999999976544433    3332    222  11 222332      2468


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |+||.-.+.   .-.-+...+.+++|++++
T Consensus       212 DiVI~t~p~---~~i~~~~l~~~~~g~vII  238 (296)
T PRK08306        212 DIIFNTIPA---LVLTKEVLSKMPPEALII  238 (296)
T ss_pred             CEEEECCCh---hhhhHHHHHcCCCCcEEE
Confidence            999975431   123355667889988765

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=88.46  E-value=14  Score=30.96  Aligned_cols=121  Identities=12%  Similarity=0.022  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHH-HHHHHHHHHcCCCCceEEEe--CCc
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHY-EKGLPIIQKAGVAHKIDFRE--GPA   80 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~-~~a~~~~~~~~~~~~i~~~~--~d~   80 (187)
                      +|....+=+.++.....+..+-..+|+......+...++++.+|++.+..-... ....+.++..|.  ++.++.  .|.
T Consensus        68 ~pt~~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi--~v~~vd~~~d~  145 (437)
T PRK05613         68 NPTVEALENRIASLEGGVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGI--EVTFVENPDDP  145 (437)
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCe--EEEEECCCCCH
Confidence            455666666666766677888888888666554444355566787765443333 333455566564  455553  123


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcC
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTL  132 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~  132 (187)
                      .++...+      .....+|++...  .......++.+.++.++ |-.+++|++.
T Consensus       146 e~l~~~l------~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~  194 (437)
T PRK05613        146 ESWQAAV------QPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTI  194 (437)
T ss_pred             HHHHHhC------CccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCC
Confidence            2222222      334567776433  21122234444444444 4456666664

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=88.35  E-value=6.2  Score=32.77  Aligned_cols=123  Identities=14%  Similarity=0.129  Sum_probs=62.7

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|....+-..++.....+..+-.++|...+...+...+.++.+|+..+..-. ........++..+.  .+.++..+..+
T Consensus        57 ~pt~~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi--~v~~~d~~d~e  134 (425)
T PRK06084         57 NPTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGI--ETRFAAHDDIA  134 (425)
T ss_pred             CchHHHHHHHHHHHhCCCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhccccee--EEEEECCCCHH
Confidence            4667777788887777777777777776655554433444567777665322 23333332222222  33444332223


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  133 (187)
                      .+....     .....+|++..+  +......++.+.++.+. |-.+|+|++..
T Consensus       135 ~le~ai-----~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a  183 (425)
T PRK06084        135 ALEALI-----DERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVA  183 (425)
T ss_pred             HHHHHh-----ccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence            333332     234568887632  21111113444443333 55677777754

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=88.33  E-value=7.6  Score=27.95  Aligned_cols=77  Identities=17%  Similarity=0.056  Sum_probs=41.6

Q ss_pred             EEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc------------------hHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836           22 NTMEIGVFT-GYSLLATALAIPDDGKILALDITK------------------EHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus        22 ~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~------------------~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|+-+|||. |......+...+ -++++.+|.+.                  ...+.+++.+++.+-.-+++.+......
T Consensus         1 ~VlViG~GglGs~ia~~La~~G-vg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~   79 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSG-VGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence            478889873 443333332222 36899999875                  2344556666655433345444443322


Q ss_pred             -HHHHHhhcccCCCceeEEEEcCC
Q 029836           83 -LLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        83 -~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                       .+..+      -..+|+|+.-.+
T Consensus        80 ~~~~~~------l~~~DlVi~~~d   97 (174)
T cd01487          80 NNLEGL------FGDCDIVVEAFD   97 (174)
T ss_pred             hhHHHH------hcCCCEEEECCC
Confidence             22333      246898886533

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08507 prephenate dehydrogenase; Validated

Probab=88.26  E-value=3.2  Score=32.17  Aligned_cols=84  Identities=21%  Similarity=0.305  Sum_probs=49.8

Q ss_pred             EEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           22 NTMEIGVFTGYSLLATALAIPD---DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~---~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      +|.-||+  |..+..++..+..   ..+|+++|.+++..+.++    ..|....    ..+.    ...      .+ .|
T Consensus         2 ~I~iIG~--G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~----~~g~~~~----~~~~----~~~------~~-aD   60 (275)
T PRK08507          2 KIGIIGL--GLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL----ELGLVDE----IVSF----EEL------KK-CD   60 (275)
T ss_pred             EEEEEcc--CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH----HCCCCcc----cCCH----HHH------hc-CC
Confidence            4666776  4555554444321   237999999987766543    2333111    1121    122      22 69


Q ss_pred             EEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           99 FVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      +||+-.+.......+..+.+ ++++.+++
T Consensus        61 ~Vilavp~~~~~~~~~~l~~-l~~~~iv~   88 (275)
T PRK08507         61 VIFLAIPVDAIIEILPKLLD-IKENTTII   88 (275)
T ss_pred             EEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence            99988776677777888877 88877554

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=88.17  E-value=5.6  Score=26.19  Aligned_cols=90  Identities=17%  Similarity=0.079  Sum_probs=51.2

Q ss_pred             EEEEEcccccHHHHH-HHhhCCCCCEEE-EEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           22 NTMEIGVFTGYSLLA-TALAIPDDGKIL-ALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~-l~~~~~~~~~v~-~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      ++.-||+|.-..... -+....++.+++ .+|.+++..+.+   .+..+.    . ...|..+.+.        ...+|+
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~---~~~~~~----~-~~~~~~~ll~--------~~~~D~   65 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAF---AEKYGI----P-VYTDLEELLA--------DEDVDA   65 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH---HHHTTS----E-EESSHHHHHH--------HTTESE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHH---HHHhcc----c-chhHHHHHHH--------hhcCCE
Confidence            577888865432222 122232355655 568887665544   334343    2 4456655554        347999


Q ss_pred             EEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836          100 VFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus       100 v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      |++..+...+.+....   .++.|--+++.-
T Consensus        66 V~I~tp~~~h~~~~~~---~l~~g~~v~~EK   93 (120)
T PF01408_consen   66 VIIATPPSSHAEIAKK---ALEAGKHVLVEK   93 (120)
T ss_dssp             EEEESSGGGHHHHHHH---HHHTTSEEEEES
T ss_pred             EEEecCCcchHHHHHH---HHHcCCEEEEEc
Confidence            9998776555554444   555666666543

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=88.17  E-value=3.1  Score=32.77  Aligned_cols=77  Identities=16%  Similarity=0.104  Sum_probs=45.6

Q ss_pred             EEEcccccHHHHHHHhhCCC--CCEEEEEeCCchHHHHHHHHHHHcCCCCceEE----EeCCchHH--HHHHhhcccCCC
Q 029836           24 MEIGVFTGYSLLATALAIPD--DGKILALDITKEHYEKGLPIIQKAGVAHKIDF----REGPALPL--LDQLIQDEKYHG   95 (187)
Q Consensus        24 LeiG~g~G~~~~~l~~~~~~--~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~----~~~d~~~~--l~~~~~~~~~~~   95 (187)
                      |-.| |.|.++..+.+.+-.  ..+++.+|.++..+-..++.++.....+++++    +.+|..+.  +..+..    ..
T Consensus         2 LVTG-a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~----~~   76 (293)
T PF02719_consen    2 LVTG-AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFE----EY   76 (293)
T ss_dssp             EEET-TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT------
T ss_pred             EEEc-cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHh----hc
Confidence            4444 788888888765521  26899999999998888877754322234543    57888663  344421    34


Q ss_pred             ceeEEEEcCC
Q 029836           96 TFDFVFVDAD  105 (187)
Q Consensus        96 ~~D~v~~d~~  105 (187)
                      .+|+||.-+.
T Consensus        77 ~pdiVfHaAA   86 (293)
T PF02719_consen   77 KPDIVFHAAA   86 (293)
T ss_dssp             T-SEEEE---
T ss_pred             CCCEEEEChh
Confidence            7899997765

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=88.02  E-value=9.4  Score=31.76  Aligned_cols=41  Identities=20%  Similarity=0.316  Sum_probs=30.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHH
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGL   61 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~   61 (187)
                      ++.+|--||.  |+.+..++..+..+.+|+++|++++.++...
T Consensus         5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~   45 (425)
T PRK15182          5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELK   45 (425)
T ss_pred             CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence            4567777755  7777777776765678999999998877655

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.99  E-value=2.4  Score=34.10  Aligned_cols=97  Identities=8%  Similarity=-0.060  Sum_probs=54.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH-HcCCC------CceEEEeCCchHHHHHHhhc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ-KAGVA------HKIDFREGPALPLLDQLIQD   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~-~~~~~------~~i~~~~~d~~~~l~~~~~~   90 (187)
                      ....+|.-||+|.  ++..++..+...+.++....+++..+..++.-. ...++      .++.. ..|..+.       
T Consensus         5 ~~~mkI~IiGaGa--~G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a-------   74 (341)
T PRK12439          5 KREPKVVVLGGGS--WGTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEA-------   74 (341)
T ss_pred             cCCCeEEEECCCH--HHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHH-------
Confidence            3456899998854  444444333323356677777776655443210 00111      11211 1222211       


Q ss_pred             ccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           91 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                         ....|+|++--+.......++.+.+.++++..++
T Consensus        75 ---~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vI  108 (341)
T PRK12439         75 ---ANCADVVVMGVPSHGFRGVLTELAKELRPWVPVV  108 (341)
T ss_pred             ---HhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence               1356999988777778888999998898887554

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=87.96  E-value=1.7  Score=33.64  Aligned_cols=71  Identities=10%  Similarity=0.121  Sum_probs=53.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      +.++..-+|+|+..|.||-.+.+.   +-.|++||.-+-+.     ++-..   ..++....|...+-|.       ...
T Consensus       209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma~-----sL~dt---g~v~h~r~DGfk~~P~-------r~~  270 (358)
T COG2933         209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMAQ-----SLMDT---GQVTHLREDGFKFRPT-------RSN  270 (358)
T ss_pred             hcCCceeeecccCCCccchhhhhc---ceEEEEeccchhhh-----hhhcc---cceeeeeccCcccccC-------CCC
Confidence            456778999999999999998864   68999999876432     22222   4678888888877663       457


Q ss_pred             eeEEEEcCC
Q 029836           97 FDFVFVDAD  105 (187)
Q Consensus        97 ~D~v~~d~~  105 (187)
                      .|..++|..
T Consensus       271 idWmVCDmV  279 (358)
T COG2933         271 IDWMVCDMV  279 (358)
T ss_pred             CceEEeehh
Confidence            899999975

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=87.93  E-value=9  Score=29.81  Aligned_cols=93  Identities=12%  Similarity=0.015  Sum_probs=52.5

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCC---CceEEEeCCchHHHHHHhhcccCCCce
Q 029836           22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVA---HKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      +|.-||+|.  .+..++..+. .+.+|+.++.+++.++..++    .+..   ..... ..........       .+.+
T Consensus         2 ~I~IiG~G~--~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~-~~~~~~~~~~-------~~~~   67 (304)
T PRK06522          2 KIAILGAGA--IGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLEDGEITV-PVLAADDPAE-------LGPQ   67 (304)
T ss_pred             EEEEECCCH--HHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCcccCCceee-cccCCCChhH-------cCCC
Confidence            578888853  3344333332 14689999987766544432    2321   11100 0000011111       2468


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+|++-.........++.+.+.+.++..++.
T Consensus        68 d~vila~k~~~~~~~~~~l~~~l~~~~~iv~   98 (304)
T PRK06522         68 DLVILAVKAYQLPAALPSLAPLLGPDTPVLF   98 (304)
T ss_pred             CEEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence            9999887766778888888888888876653

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=87.90  E-value=6.8  Score=33.07  Aligned_cols=86  Identities=12%  Similarity=0.103  Sum_probs=51.3

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..+++++-+|+|. |......++.+  +.+|+.+|.++.....+..    .|.    ++  .+..+.+          ..
T Consensus       252 LaGKtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~----~G~----~~--~~leell----------~~  309 (476)
T PTZ00075        252 IAGKTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAM----EGY----QV--VTLEDVV----------ET  309 (476)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHh----cCc----ee--ccHHHHH----------hc
Confidence            3678999999874 33333344443  4689999998765433322    122    22  1222222          35


Q ss_pred             eeEEEEcCCCcccHHHH-HHHHhcccCCeEEEE
Q 029836           97 FDFVFVDADKDNYVNYH-KRLIELVKVGGVIGY  128 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~-~~~~~~L~~gG~lv~  128 (187)
                      .|+|+....   ....+ ......||+|++|+-
T Consensus       310 ADIVI~atG---t~~iI~~e~~~~MKpGAiLIN  339 (476)
T PTZ00075        310 ADIFVTATG---NKDIITLEHMRRMKNNAIVGN  339 (476)
T ss_pred             CCEEEECCC---cccccCHHHHhccCCCcEEEE
Confidence            799987542   23344 366788999999984

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=87.90  E-value=10  Score=30.75  Aligned_cols=81  Identities=14%  Similarity=-0.002  Sum_probs=46.6

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEe
Q 029836           18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFRE   77 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~   77 (187)
                      .+..+||-+|||. |...+..+...+ -++++.+|.+.                   ...+.+++.+++.+-.-+++.+.
T Consensus        26 L~~~~VlivG~GGlGs~~a~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~  104 (355)
T PRK05597         26 LFDAKVAVIGAGGLGSPALLYLAGAG-VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV  104 (355)
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence            3567999999973 443333333322 47888888754                   34566777777765433444444


Q ss_pred             CCchH-HHHHHhhcccCCCceeEEEEcCC
Q 029836           78 GPALP-LLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        78 ~d~~~-~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      ..... ....+      -..+|+|+...+
T Consensus       105 ~~i~~~~~~~~------~~~~DvVvd~~d  127 (355)
T PRK05597        105 RRLTWSNALDE------LRDADVILDGSD  127 (355)
T ss_pred             eecCHHHHHHH------HhCCCEEEECCC
Confidence            43321 12222      246898886654

>PRK07503 methionine gamma-lyase; Provisional

Probab=87.90  E-value=13  Score=30.69  Aligned_cols=123  Identities=11%  Similarity=0.068  Sum_probs=60.2

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|...++-+.++........+-+++|+..+...+...+.++.+|+.....-. .....+..++..|.  ++.++..+..+
T Consensus        64 ~p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~--~v~~vd~~d~~  141 (403)
T PRK07503         64 NPTLALLEQRMASLEGGEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGV--TVRHVDLTDPA  141 (403)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCE--EEEEeCCCCHH
Confidence            4556666677777666666666666665544444333454566766543221 22223333444443  34444333223


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  133 (187)
                      .+....     .+...+|++..+  +.....-++.+.++.++ |..+++|++..
T Consensus       142 ~l~~~i-----~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a  190 (403)
T PRK07503        142 ALKAAI-----SDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYC  190 (403)
T ss_pred             HHHHhc-----CccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence            333322     234568887432  22122223344444444 55677777764

>PLN02427 UDP-apiose/xylose synthase

Probab=87.88  E-value=1.8  Score=35.16  Aligned_cols=76  Identities=20%  Similarity=0.183  Sum_probs=48.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCchHHHHHHHHHHHcC---CCCceEEEeCCchHH--HHHHhhc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPD--DGKILALDITKEHYEKGLPIIQKAG---VAHKIDFREGPALPL--LDQLIQD   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~--~~~v~~vd~~~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~--l~~~~~~   90 (187)
                      .++++||-+| |+|+++.++++.+-.  +.+|++++.++.....    +...+   ...+++++.+|..+.  +...   
T Consensus        12 ~~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~----l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~---   83 (386)
T PLN02427         12 IKPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKH----LLEPDTVPWSGRIQFHRINIKHDSRLEGL---   83 (386)
T ss_pred             ccCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhh----hhccccccCCCCeEEEEcCCCChHHHHHH---
Confidence            4567899887 789999998887743  3689999976543321    11111   124689999988653  3333   


Q ss_pred             ccCCCceeEEEEcC
Q 029836           91 EKYHGTFDFVFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~v~~d~  104 (187)
                         -..+|.||.-+
T Consensus        84 ---~~~~d~ViHlA   94 (386)
T PLN02427         84 ---IKMADLTINLA   94 (386)
T ss_pred             ---hhcCCEEEEcc
Confidence               23478887544

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.88  E-value=9.2  Score=28.34  Aligned_cols=82  Identities=16%  Similarity=0.118  Sum_probs=47.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KYH   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~~   94 (187)
                      +.+++|-.|++ |.++..+++.+. .+.+|++++.+++....+.+.+...   .++.++.+|..+.  +..+.+.. ...
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45789999864 555566555442 3578999999887666554444432   3577777776532  11111110 002


Q ss_pred             CceeEEEEcC
Q 029836           95 GTFDFVFVDA  104 (187)
Q Consensus        95 ~~~D~v~~d~  104 (187)
                      +.+|.++...
T Consensus        80 ~~id~ii~~a   89 (238)
T PRK05786         80 NAIDGLVVTV   89 (238)
T ss_pred             CCCCEEEEcC
Confidence            4578887654

>PRK07063 short chain dehydrogenase; Provisional

Probab=87.85  E-value=9.5  Score=28.80  Aligned_cols=85  Identities=13%  Similarity=0.105  Sum_probs=52.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KYH   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~~   94 (187)
                      +++++|-.|+. |.++..+++.+. .+.+|+.++.+++..+...+.+...+...++.++..|..+.  +..+.+.. ...
T Consensus         6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            56789988864 555666655543 35789999998887777666666532234677888776432  22221110 013


Q ss_pred             CceeEEEEcC
Q 029836           95 GTFDFVFVDA  104 (187)
Q Consensus        95 ~~~D~v~~d~  104 (187)
                      +.+|.++...
T Consensus        85 g~id~li~~a   94 (260)
T PRK07063         85 GPLDVLVNNA   94 (260)
T ss_pred             CCCcEEEECC
Confidence            5789888754

>PRK07050 cystathionine beta-lyase; Provisional

Probab=87.82  E-value=14  Score=30.34  Aligned_cols=123  Identities=13%  Similarity=0.083  Sum_probs=70.5

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHH-HHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYE-KGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~-~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|...++-+.++.....+.++-..+|+..+...+...++++.+|+..+..-.... .........|.  ++.++.....+
T Consensus        64 ~pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi--~v~~vd~~~~~  141 (394)
T PRK07050         64 TPTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGI--TVRFYDPLIGA  141 (394)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCe--EEEEECCCCHH
Confidence            4667777777888777888888777777766555444555677877775544332 23334445454  44454332222


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCC-eEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVG-GVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~g-G~lv~~~~~~  133 (187)
                      .+....     .+.-.+|++..+  +.-....++.+.++.+.. -.+++|++..
T Consensus       142 ~l~~~i-----~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a  190 (394)
T PRK07050        142 GIADLI-----QPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYS  190 (394)
T ss_pred             HHHHhc-----CCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcc
Confidence            233322     234578886543  223445566666655654 4667777753

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.74  E-value=3.5  Score=32.73  Aligned_cols=94  Identities=12%  Similarity=0.105  Sum_probs=53.3

Q ss_pred             EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHH---HH---HcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           22 NTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPI---IQ---KAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~---~~---~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      +|.-||+  |.++..++..+.. +..|+.++.+++..+..++.   .+   ....+.++++. .+..+.+         .
T Consensus         2 kI~IiGa--Ga~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~---------~   69 (326)
T PRK14620          2 KISILGA--GSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL---------S   69 (326)
T ss_pred             EEEEECc--CHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH---------h
Confidence            4677877  4444444443321 36788888887665544432   11   00111122222 2222111         2


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHh-cccCCeEEE
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIE-LVKVGGVIG  127 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~-~L~~gG~lv  127 (187)
                      +..|+||+--......+.++.+.+ .++++..++
T Consensus        70 ~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv  103 (326)
T PRK14620         70 DNATCIILAVPTQQLRTICQQLQDCHLKKNTPIL  103 (326)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEE
Confidence            467999998776777888888887 888776554

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=87.63  E-value=3.9  Score=31.60  Aligned_cols=90  Identities=14%  Similarity=0.222  Sum_probs=49.7

Q ss_pred             CCCEEEEEcccccH----HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           19 NAKNTMEIGVFTGY----SLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~----~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ...+|+-+|+|+--    -+.-+-+.+|.++.++-.|+.+-.             .+.-..+.+|...+.+        .
T Consensus        61 ~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v-------------SDa~~~~~~Dc~t~~~--------~  119 (299)
T PF06460_consen   61 HNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV-------------SDADQSIVGDCRTYMP--------P  119 (299)
T ss_dssp             TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B--------------SSSEEEES-GGGEEE--------S
T ss_pred             cCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc-------------cccCCceeccccccCC--------C
Confidence            45799999987532    344466778878888888886521             1233456788766544        5


Q ss_pred             CceeEEEEcCC-------------Cccc-HHHHHHHHhcccCCeEEEEe
Q 029836           95 GTFDFVFVDAD-------------KDNY-VNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        95 ~~~D~v~~d~~-------------~~~~-~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++|+||.|..             ++.. .-+...+...|+-||-+.+.
T Consensus       120 ~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK  168 (299)
T PF06460_consen  120 DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK  168 (299)
T ss_dssp             S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence            79999999854             1222 22234445789999999874

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=87.62  E-value=16  Score=30.89  Aligned_cols=42  Identities=14%  Similarity=0.032  Sum_probs=25.6

Q ss_pred             CEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHH
Q 029836           21 KNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLP   62 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~   62 (187)
                      ++|.-||+|........+-+. +.+.+|+++|++++.++..++
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~   44 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNS   44 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHc
Confidence            357778776554433322111 114679999999988776543

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=87.56  E-value=9.9  Score=28.36  Aligned_cols=79  Identities=11%  Similarity=0.045  Sum_probs=44.3

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc------------------hHHHHHHHHHHHcCCCCceEEEeC
Q 029836           18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITK------------------EHYEKGLPIIQKAGVAHKIDFREG   78 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~------------------~~~~~a~~~~~~~~~~~~i~~~~~   78 (187)
                      .+..+|+-+|||. |......+...+ -++++.+|.+.                  ...+.+++.+++.+..-+++.+..
T Consensus        26 L~~~~V~ViG~GglGs~ia~~La~~G-vg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~  104 (212)
T PRK08644         26 LKKAKVGIAGAGGLGSNIAVALARSG-VGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE  104 (212)
T ss_pred             HhCCCEEEECcCHHHHHHHHHHHHcC-CCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence            3567899999973 443333333322 36899999872                  234556666666544334544443


Q ss_pred             CchH-HHHHHhhcccCCCceeEEEEc
Q 029836           79 PALP-LLDQLIQDEKYHGTFDFVFVD  103 (187)
Q Consensus        79 d~~~-~l~~~~~~~~~~~~~D~v~~d  103 (187)
                      ...+ ....+      -..+|+|+.-
T Consensus       105 ~i~~~~~~~~------~~~~DvVI~a  124 (212)
T PRK08644        105 KIDEDNIEEL------FKDCDIVVEA  124 (212)
T ss_pred             ecCHHHHHHH------HcCCCEEEEC
Confidence            3322 22233      2468998854

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.54  E-value=6.5  Score=31.41  Aligned_cols=97  Identities=18%  Similarity=0.144  Sum_probs=55.4

Q ss_pred             CCEEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHH-------cCCC-----CceEEEeCCchHHHH
Q 029836           20 AKNTMEIGVFT-GY-SLLATALAIPDDGKILALDITKEHYEKGLPIIQK-------AGVA-----HKIDFREGPALPLLD   85 (187)
Q Consensus        20 ~~~vLeiG~g~-G~-~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~-------~~~~-----~~i~~~~~d~~~~l~   85 (187)
                      .++|--||+|. |. ++..++.+   +.+|+..|++++..+.+++.+++       .+..     .++++. .+.    .
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~a---G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l----~   78 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAH---GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATI----E   78 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCH----H
Confidence            36788898872 33 33333332   68999999999887766654432       2211     122222 121    1


Q ss_pred             HHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           86 QLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..      -..-|+|+-...  .+--..+|..+.+.++++. ++.+|+
T Consensus        79 ~a------v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnT  119 (321)
T PRK07066         79 AC------VADADFIQESAPEREALKLELHERISRAAKPDA-IIASST  119 (321)
T ss_pred             HH------hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECC
Confidence            11      135688886544  2223567788888888887 444443

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=87.45  E-value=2.9  Score=33.16  Aligned_cols=35  Identities=20%  Similarity=0.205  Sum_probs=29.7

Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ...+|+|++....-+..+.++.+.+.+++...+++
T Consensus        65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~   99 (307)
T COG1893          65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLF   99 (307)
T ss_pred             cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEE
Confidence            35799999988777788899999999999987764

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=87.43  E-value=3.2  Score=33.21  Aligned_cols=79  Identities=15%  Similarity=0.193  Sum_probs=48.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHH-HHcC--CCCceEEEeCCchHH--HHHHhhccc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPII-QKAG--VAHKIDFREGPALPL--LDQLIQDEK   92 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~-~~~~--~~~~i~~~~~d~~~~--l~~~~~~~~   92 (187)
                      +.++||-+| |+|+++.++++.+- .+.+|+++|............+ ...+  ...+++++.+|..+.  +..+.    
T Consensus        14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~----   88 (348)
T PRK15181         14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKAC----   88 (348)
T ss_pred             cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh----
Confidence            457899988 78999999887773 2468999997554322111111 1111  114688899998653  33332    


Q ss_pred             CCCceeEEEEcC
Q 029836           93 YHGTFDFVFVDA  104 (187)
Q Consensus        93 ~~~~~D~v~~d~  104 (187)
                        ..+|.||.-+
T Consensus        89 --~~~d~ViHlA   98 (348)
T PRK15181         89 --KNVDYVLHQA   98 (348)
T ss_pred             --hCCCEEEECc
Confidence              3578887654

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=87.43  E-value=5.9  Score=28.69  Aligned_cols=92  Identities=8%  Similarity=0.063  Sum_probs=48.2

Q ss_pred             HHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC--CceEEEeCCchH--HHH
Q 029836           11 FSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA--HKIDFREGPALP--LLD   85 (187)
Q Consensus        11 l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~--~l~   85 (187)
                      +...+.. .....|+.+|||.-.-...+....+ +.+++-+|. |+.++.-++.+++.+..  .+.+++..|..+  +..
T Consensus        69 v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~-~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~  146 (183)
T PF04072_consen   69 VREFIAKHPGARQVVNLGAGLDTRAYRLDNPAG-GVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWID  146 (183)
T ss_dssp             HHHHHHHHTTESEEEEET-TT--HHHHHHHTTT-TEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHH
T ss_pred             HHHhhccCCCCcEEEEcCCCCCchHHHhhcccc-ceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHH
Confidence            3334433 3445999999977766666655432 467777776 55666666666665321  234567777653  455


Q ss_pred             HHhhcccCCCceeEEEEcC
Q 029836           86 QLIQDEKYHGTFDFVFVDA  104 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~  104 (187)
                      .+.+.+.+.+..=++++-+
T Consensus       147 ~L~~~g~~~~~ptl~i~Eg  165 (183)
T PF04072_consen  147 ALPKAGFDPDRPTLFIAEG  165 (183)
T ss_dssp             HHHHCTT-TTSEEEEEEES
T ss_pred             HHHHhCCCCCCCeEEEEcc
Confidence            5554332233444555544

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=87.42  E-value=6.4  Score=28.24  Aligned_cols=95  Identities=15%  Similarity=0.219  Sum_probs=51.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      .++.+-+|+..-..-...+.. + .+++..||.++--+..  +        .+-++..-...++......   +.++||+
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~-G-A~~iltveyn~L~i~~--~--------~~dr~ssi~p~df~~~~~~---y~~~fD~   66 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQH-G-AAKILTVEYNKLEIQE--E--------FRDRLSSILPVDFAKNWQK---YAGSFDF   66 (177)
T ss_pred             CceEEEEecCCchhhHHHHHc-C-CceEEEEeecccccCc--c--------cccccccccHHHHHHHHHH---hhccchh
Confidence            467888888754443333332 3 5789999987522110  0        0111111112233333221   1578898


Q ss_pred             EEEcCC--------------CcccHHHHHHHHhcccCCeEEEEe
Q 029836          100 VFVDAD--------------KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus       100 v~~d~~--------------~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +..-+.              +......+..+..+||+||.+++.
T Consensus        67 ~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~  110 (177)
T PF03269_consen   67 AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG  110 (177)
T ss_pred             hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence            754321              233466777788999999999874

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=87.32  E-value=4.1  Score=35.22  Aligned_cols=79  Identities=14%  Similarity=0.053  Sum_probs=49.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHHc-----CC--CCceEEEeCCchHH--HHHHh
Q 029836           19 NAKNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKA-----GV--AHKIDFREGPALPL--LDQLI   88 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~-----~~--~~~i~~~~~d~~~~--l~~~~   88 (187)
                      .++.+|-+| |+|.++..+++.+ ..+.+|+++..+++......+.+...     +.  ..+++++.+|..+.  +... 
T Consensus        79 ~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a-  156 (576)
T PLN03209         79 DEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA-  156 (576)
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH-
Confidence            456788777 4677777777655 23578999988887665544444332     11  13588888888653  2222 


Q ss_pred             hcccCCCceeEEEEcC
Q 029836           89 QDEKYHGTFDFVFVDA  104 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~  104 (187)
                           -+..|+||...
T Consensus       157 -----LggiDiVVn~A  167 (576)
T PLN03209        157 -----LGNASVVICCI  167 (576)
T ss_pred             -----hcCCCEEEEcc
Confidence                 34679888654

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=87.32  E-value=3.3  Score=33.95  Aligned_cols=39  Identities=26%  Similarity=0.301  Sum_probs=25.3

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHH
Q 029836           22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLP   62 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~   62 (187)
                      +|--||.  |+.+..++..+..+..|+++|++++.++.+.+
T Consensus         2 kI~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~   40 (388)
T PRK15057          2 KITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLND   40 (388)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence            3455665  55444444333335789999999999877765

>PRK07049 methionine gamma-lyase; Validated

Probab=87.29  E-value=16  Score=30.41  Aligned_cols=129  Identities=15%  Similarity=0.132  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHH-HHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYE-KGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~-~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|....+-+.++.......++-+++|...+...+...+.++.+|+..++.-.... .+...++..|. ..+.+..+...+
T Consensus        82 ~Pt~~~Le~~lA~leg~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi-~~v~~~~~~d~~  160 (427)
T PRK07049         82 HPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGV-GAVGFADGLSEA  160 (427)
T ss_pred             CcCHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCc-EEEEEeCCCCHH
Confidence            4556667777777777778888888887766555545555667777665544443 33444566665 224443322222


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--Ccc---cHHHHHHHHhccc----CCeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDN---YVNYHKRLIELVK----VGGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~---~~~~~~~~~~~L~----~gG~lv~~~~~~  133 (187)
                      .+..............+|++..+  +..   -.+.+.++.+..+    .+-++++||++.
T Consensus       161 ~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~  220 (427)
T PRK07049        161 AIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLL  220 (427)
T ss_pred             HHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcc
Confidence            23222110000134578888754  211   1233333333322    345677888753

>PRK08655 prephenate dehydrogenase; Provisional

Probab=87.21  E-value=4.3  Score=33.89  Aligned_cols=87  Identities=15%  Similarity=0.124  Sum_probs=47.6

Q ss_pred             EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836           22 NTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v  100 (187)
                      +|.-|| |.|..+..++..+.. +.+|++++.+++....   .....+.    .. ..+..+.          -...|+|
T Consensus         2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~---~a~~~gv----~~-~~~~~e~----------~~~aDvV   62 (437)
T PRK08655          2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE---VAKELGV----EY-ANDNIDA----------AKDADIV   62 (437)
T ss_pred             EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHH---HHHHcCC----ee-ccCHHHH----------hccCCEE
Confidence            567776 335555555544421 3589999988765422   1222222    11 1122111          1345888


Q ss_pred             EEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836          101 FVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus       101 ~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      ++..+.......++.+.+.+++|.+++
T Consensus        63 Ilavp~~~~~~vl~~l~~~l~~~~iVi   89 (437)
T PRK08655         63 IISVPINVTEDVIKEVAPHVKEGSLLM   89 (437)
T ss_pred             EEecCHHHHHHHHHHHHhhCCCCCEEE
Confidence            876665555667777777777777554

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=87.08  E-value=16  Score=30.19  Aligned_cols=124  Identities=18%  Similarity=0.131  Sum_probs=75.7

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchHHHHHHHHHHHcCCCCceEEEeC-Cch
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDI-TKEHYEKGLPIIQKAGVAHKIDFREG-PAL   81 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~-~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~   81 (187)
                      +|....+=..++.+-.....+-.-||.+.++..+...+.++-+|+..+. --...+...+.+++.|+  .++++.. +..
T Consensus        62 nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi--~~~~~d~~~~~  139 (396)
T COG0626          62 NPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGV--EVTFVDPGDDE  139 (396)
T ss_pred             CccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCe--EEEEECCCChH
Confidence            4555556666667777889999999999988877766665667766654 34455666666777654  4554443 333


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCC-eEEEEeCcCCC
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVG-GVIGYDNTLWG  134 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~g-G~lv~~~~~~~  134 (187)
                      .....+.     .+..++||+..+  +.--...+..+.++-+.. -.+++||+...
T Consensus       140 ~~~~~~~-----~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat  190 (396)
T COG0626         140 ALEAAIK-----EPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT  190 (396)
T ss_pred             HHHHHhc-----ccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc
Confidence            4444442     236899999865  222222334444444444 56677777543

>PRK10083 putative oxidoreductase; Provisional

Probab=87.05  E-value=10  Score=29.85  Aligned_cols=99  Identities=13%  Similarity=0.097  Sum_probs=52.1

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhh-CCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALA-IPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~-~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..+..+||-+|+| .|..+..+++. ++ ...+++++.+++..+.+++    .|...-+.....+   +...+...   .
T Consensus       158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~---~~~~~~~~---g  226 (339)
T PRK10083        158 PTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKE----SGADWVINNAQEP---LGEALEEK---G  226 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCcccc---HHHHHhcC---C
Confidence            3456788888853 22233445553 23 3468889988877766553    3431111111112   22222111   1


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+|+++ |..  .....+...++.|+++|.++.-
T Consensus       227 ~~~d~vi-d~~--g~~~~~~~~~~~l~~~G~~v~~  258 (339)
T PRK10083        227 IKPTLII-DAA--CHPSILEEAVTLASPAARIVLM  258 (339)
T ss_pred             CCCCEEE-ECC--CCHHHHHHHHHHhhcCCEEEEE
Confidence            2345555 332  1134567778899999998864

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=87.04  E-value=9.9  Score=30.08  Aligned_cols=98  Identities=12%  Similarity=0.074  Sum_probs=56.1

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc-hHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA-LPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~~   94 (187)
                      ..+..++|-.|+| .|..+..+++..  +.++++++.+++..+.++    ..|. .  +++.... .++...+....  .
T Consensus       163 ~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~----~~g~-~--~~i~~~~~~~~~~~~~~~~--~  231 (345)
T cd08260         163 VKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELAR----ELGA-V--ATVNASEVEDVAAAVRDLT--G  231 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHH----HhCC-C--EEEccccchhHHHHHHHHh--C
Confidence            3456788888853 344555566664  478999988887766653    3344 1  2222211 12222221111  2


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +.+|+++--..   ....+..+++.|+++|.++.
T Consensus       232 ~~~d~vi~~~g---~~~~~~~~~~~l~~~g~~i~  262 (345)
T cd08260         232 GGAHVSVDALG---IPETCRNSVASLRKRGRHVQ  262 (345)
T ss_pred             CCCCEEEEcCC---CHHHHHHHHHHhhcCCEEEE
Confidence            37898884221   13456678889999998875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK07680 late competence protein ComER; Validated

Probab=87.01  E-value=6.4  Score=30.43  Aligned_cols=87  Identities=11%  Similarity=0.011  Sum_probs=49.2

Q ss_pred             EEEEEcccccHHHHHHHhhCCC-C----CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           22 NTMEIGVFTGYSLLATALAIPD-D----GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~-~----~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      +|.-||+  |..+..++..+.. +    ..++..+.+++..+.+.+.+      ..+... .+..+.+          ..
T Consensus         2 ~I~iIG~--G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~------~g~~~~-~~~~~~~----------~~   62 (273)
T PRK07680          2 NIGFIGT--GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY------PGIHVA-KTIEEVI----------SQ   62 (273)
T ss_pred             EEEEECc--cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc------CCeEEE-CCHHHHH----------Hh
Confidence            4667886  4444444443211 1    36888888876654433211      123332 2333332          24


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      .|+||+-.......+.++.+.+.++++..++
T Consensus        63 aDiVilav~p~~~~~vl~~l~~~l~~~~~ii   93 (273)
T PRK07680         63 SDLIFICVKPLDIYPLLQKLAPHLTDEHCLV   93 (273)
T ss_pred             CCEEEEecCHHHHHHHHHHHHhhcCCCCEEE
Confidence            5899887665566777777777888777554

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=86.97  E-value=7.6  Score=29.13  Aligned_cols=83  Identities=22%  Similarity=0.186  Sum_probs=51.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KYH   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~~   94 (187)
                      +.+++|-.| |+|..+..+++.+. .+.+|++++.++...+...+.++..+  .++.++.+|..+.  +..+.+.. ...
T Consensus         3 ~~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (258)
T PRK12429          3 KGKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETF   79 (258)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            356788777 46777777776553 35689999998887766655555433  4677888876542  22221110 002


Q ss_pred             CceeEEEEcC
Q 029836           95 GTFDFVFVDA  104 (187)
Q Consensus        95 ~~~D~v~~d~  104 (187)
                      +.+|.|+...
T Consensus        80 ~~~d~vi~~a   89 (258)
T PRK12429         80 GGVDILVNNA   89 (258)
T ss_pred             CCCCEEEECC
Confidence            4689988654

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=86.78  E-value=2  Score=35.11  Aligned_cols=48  Identities=19%  Similarity=0.045  Sum_probs=33.1

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHH
Q 029836           11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGL   61 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~   61 (187)
                      -..++...+..+||-|.+|... ++.++..-|  .+|++||++|......+
T Consensus        27 D~~aL~i~~~d~vl~ItSaG~N-~L~yL~~~P--~~I~aVDlNp~Q~aLle   74 (380)
T PF11899_consen   27 DMEALNIGPDDRVLTITSAGCN-ALDYLLAGP--KRIHAVDLNPAQNALLE   74 (380)
T ss_pred             HHHHhCCCCCCeEEEEccCCch-HHHHHhcCC--ceEEEEeCCHHHHHHHH
Confidence            3455667788899999765444 444444433  79999999998765544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=86.76  E-value=12  Score=28.51  Aligned_cols=81  Identities=17%  Similarity=0.125  Sum_probs=45.8

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEe
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFRE   77 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~   77 (187)
                      .+..+|+-+||| .|......+...+ -++++.+|.+.                   ...+.+++.+++.+..-+++.+.
T Consensus        22 L~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~  100 (240)
T TIGR02355        22 LKASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN  100 (240)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            356789999986 4554444443333 47888888543                   23455566666655433455544


Q ss_pred             CCchH-HHHHHhhcccCCCceeEEEEcCC
Q 029836           78 GPALP-LLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        78 ~d~~~-~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      ....+ ....+      -..+|+|+.-.+
T Consensus       101 ~~i~~~~~~~~------~~~~DlVvd~~D  123 (240)
T TIGR02355       101 AKLDDAELAAL------IAEHDIVVDCTD  123 (240)
T ss_pred             ccCCHHHHHHH------hhcCCEEEEcCC
Confidence            33322 23333      347899986554

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=86.67  E-value=15  Score=29.39  Aligned_cols=101  Identities=18%  Similarity=0.119  Sum_probs=54.2

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDG-KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ++.+||-.|+| .|..+..+++..  +. ++++++.+++....++    +.|...-+.....+..+....+.... ....
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~-~~~~  249 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDIT-GGRG  249 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHh-CCCC
Confidence            56688888753 233445566665  35 8999998887665543    34542111111111111111111110 0246


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+++--..   ....+...++.|+++|.++.-
T Consensus       250 ~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~  279 (361)
T cd08231         250 ADVVIEASG---HPAAVPEGLELLRRGGTYVLV  279 (361)
T ss_pred             CcEEEECCC---ChHHHHHHHHHhccCCEEEEE
Confidence            898884321   134566778899999998864

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=86.64  E-value=10  Score=29.91  Aligned_cols=97  Identities=11%  Similarity=0.084  Sum_probs=55.5

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      .....++||-.|+| .|..+..+++..  +.+++.++.+++..+.+++    .|. .  .++...-.++...+..    .
T Consensus       160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~-~--~~i~~~~~~~~~~~~~----~  226 (333)
T cd08296         160 GAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGA-H--HYIDTSKEDVAEALQE----L  226 (333)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCC-c--EEecCCCccHHHHHHh----c
Confidence            34456788888853 333445566665  4679999998877666543    343 1  1222211122222211    1


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..+|+++-..   .....++..++.|+++|.++.
T Consensus       227 ~~~d~vi~~~---g~~~~~~~~~~~l~~~G~~v~  257 (333)
T cd08296         227 GGAKLILATA---PNAKAISALVGGLAPRGKLLI  257 (333)
T ss_pred             CCCCEEEECC---CchHHHHHHHHHcccCCEEEE
Confidence            2478887421   124567778889999998875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=86.50  E-value=13  Score=30.15  Aligned_cols=101  Identities=15%  Similarity=0.096  Sum_probs=53.9

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC---CchHHHHHHhhcccC
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG---PALPLLDQLIQDEKY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~~~~   93 (187)
                      .+..+||-.|+| .|..++.+++..+ ..++++++.+++..+.+++    .|...-+.....   +..+.+..+..    
T Consensus       202 ~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~~----  272 (384)
T cd08265         202 RPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVTK----  272 (384)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhcC----
Confidence            345678777653 2333444566543 2379999988875544443    444111111111   12222222211    


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...+|+|+ |.. ......++.+++.|+++|.++.-
T Consensus       273 g~gvDvvl-d~~-g~~~~~~~~~~~~l~~~G~~v~~  306 (384)
T cd08265         273 GWGADIQV-EAA-GAPPATIPQMEKSIAINGKIVYI  306 (384)
T ss_pred             CCCCCEEE-ECC-CCcHHHHHHHHHHHHcCCEEEEE
Confidence            24689887 432 12234677788899999998853

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	187
1sui_A	247	Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase L		2e-86
3c3y_A	237	Crystal Structure Of Pfomt, Phenylpropanoid And Fla		2e-59
3r3h_A	242	Crystal Structure Of O-Methyltransferase From Legio		6e-35
3cbg_A	232	Functional And Structural Characterization Of A Cat		4e-33
2avd_A	229	Crystal Structure Of Human Catechol-O-Methyltransfe		1e-29
3tr6_A	225	Structure Of A O-Methyltransferase From Coxiella Bu		6e-25
2hnk_A	239	Crystal Structure Of Sam-dependent O-methyltransfer		1e-23
3tfw_A	248	Crystal Structure Of A Putative O-Methyltransferase		3e-20
3dul_A	223	Crystal Structure Analysis Of The O-Methyltransfera		2e-18
2gpy_A	233	Crystal Structure Of Putative O-methyltransferase F		2e-09
1jr4_A	221	Catechol O-Methyltransferase Bisubstrate-Inhibitor		7e-04
2zlb_A	223	Crystal Structure Of Apo Form Of Rat Catechol-O- Me		8e-04
3oe4_A	221	Rat Catechol O-Methyltransferase In Complex With A		8e-04

>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase Length = 247

Iteration: 1
 Score =  314 bits (804), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 147/186 (79%), Positives = 168/186 (90%)
Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF SMLLKLINAKNTMEIGV+TGYSLLATALAIP+DGKILA+DI KE+YE G
Sbjct: 61  MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELG 120
Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP+I+KAGV HKIDFREGPALP+LD++I+DEK HG++DF+FVDADKDNY+NYHKRLI+LV
Sbjct: 121 LPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLV 180
Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGGVIGYDNTLW GSVVAPPDA L ++  Y RDFV ELNKALAVDPRIEIC + + DG+
Sbjct: 181 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGI 240
Query: 181 TLCRRI 186
           T+CRRI
Sbjct: 241 TICRRI 246

>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum Length = 237

Iteration: 1
 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/186 (58%), Positives = 140/186 (75%), Gaps = 1/186 (0%)
Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TSP   Q  S +LKL+NAK T+E+GVFTGYSLL TAL+IPDDGKI A+D  +E YE G
Sbjct: 52  MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIG 111
Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP I+KAGV HKI+F E  A+  LD L+Q ++  G++DF FVDADK NY+ YH+RL++LV
Sbjct: 112 LPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLV 171
Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGG++ YDNTLWGG+ VA P++++ +     R+ V ELNK LA DPRIEI  + + DG+
Sbjct: 172 KVGGIVAYDNTLWGGT-VAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDGI 230
Query: 181 TLCRRI 186
           T CRR+
Sbjct: 231 TFCRRL 236

>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella Pneumophila Length = 242

Iteration: 1
 Score =  143 bits (360), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 74/187 (39%), Positives = 113/187 (60%), Gaps = 7/187 (3%)
Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M  +P++AQF  ML++L  AK  +E+G FTGYS LA +LA+PDDG+++  DI +   +  
Sbjct: 42  MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHA 101
Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
            P  ++A   HKI  R GPAL  L  L+ +   H  FDF+F+DADK NY+NY++  ++LV
Sbjct: 102 HPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEH-QFDFIFIDADKTNYLNYYELALKLV 160
Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
              G+I  DN  W G V+ P D          R+ +++LN+ +  D R+ +  ++IADG+
Sbjct: 161 TPKGLIAIDNIFWDGKVIDPNDTSGQT-----RE-IKKLNQVIKNDSRVFVSLLAIADGM 214
Query: 181 TLCRRIG 187
            L + I 
Sbjct: 215 FLVQPIA 221

>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A Cationdependent O-Methyltransferase From The Cyanobacterium Synechocystis Sp. Strain Pcc 6803 Length = 232

Iteration: 1
 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/185 (42%), Positives = 105/185 (56%), Gaps = 11/185 (5%)
Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M  SP++AQF  +L+ L  AK  +EIGVF GYS LA AL +P DG+I+A D         
Sbjct: 54  MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIA 113
Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
               QKAGVA KI  R GPAL  L+QL Q +     FD +F+DADK NY  Y++  + L+
Sbjct: 114 KKYWQKAGVAEKISLRLGPALATLEQLTQGKPLP-EFDLIFIDADKRNYPRYYEIGLNLL 172
Query: 121 KVGGVIGYDNTLWGGSV--VAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIAD 178
           + GG++  DN LW G V  V P +A            +Q+ N+ LA D R+ I  I + D
Sbjct: 173 RRGGLMVIDNVLWHGKVTEVDPQEAQT--------QVLQQFNRDLAQDERVRISVIPLGD 224
Query: 179 GVTLC 183
           G+TL 
Sbjct: 225 GMTLA 229

>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase Domain Containing 1 Length = 229

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           MMT  ++AQ  + L +LI AK  +++G FTGYS LA ALA+P DG+++  ++  +  E G
Sbjct: 52  MMTC-EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELG 110
Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
            P+ ++A   HKID R  PAL  LD+L+   +  GTFD   VDADK+N   Y++R ++L+
Sbjct: 111 RPLWRQAEAEHKIDLRLKPALETLDELLAAGE-AGTFDVAVVDADKENCSAYYERCLQLL 169
Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           + GG++     LW G V+ PP  D+        + V+ LN+ +  D R+ I  + + DG+
Sbjct: 170 RPGGILAVLRVLWRGKVLQPPKGDVAA------ECVRNLNERIRRDVRVYISLLPLGDGL 223
Query: 181 TLCRRI 186
           TL  +I
Sbjct: 224 TLAFKI 229

>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii Length = 225

Iteration: 1
 Score =  110 bits (274), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 105/184 (57%), Gaps = 7/184 (3%)
Query: 2   MTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGL 61
            T+P++AQ  ++L+KL  AK  ++IG FTGYS +A  LA+P DG ++  D+ ++      
Sbjct: 47  QTAPEQAQLLALLVKLXQAKKVIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAK 106
Query: 62  PIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVK 121
              +KAG++ KI  R  PA   L +LI   +    +D +++DADK N   Y++  ++L++
Sbjct: 107 EYWEKAGLSDKIGLRLSPAKDTLAELIHAGQ-AWQYDLIYIDADKANTDLYYEESLKLLR 165
Query: 122 VGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVT 181
            GG+I  DN L  G V    + +  E+   +R F Q++ K    D R++   I I DG+T
Sbjct: 166 EGGLIAVDNVLRRGQVA--DEENQSENNQLIRLFNQKVYK----DERVDXILIPIGDGLT 219
Query: 182 LCRR 185
           L R+
Sbjct: 220 LARK 223

>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From Pathogenic Bacterium Leptospira Interrogans Length = 239

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/195 (36%), Positives = 109/195 (55%), Gaps = 16/195 (8%)
Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M  SP+E QF ++L K+  AK  +EIG FTGYS L  A A+P+DGKIL  D+++E     
Sbjct: 42  MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVA 101
Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY----------HGTFDFVFVDADKDNYV 110
               ++ G+ +KI  + G AL  L  LI  +              + D  F+DADK+NY 
Sbjct: 102 RKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYP 161
Query: 111 NYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIE 170
           NY+  +++L+K GG++  DN LW GSV     ADL  H       +++ N+ +  D  ++
Sbjct: 162 NYYPLILKLLKPGGLLIADNVLWDGSV-----ADLS-HQEPSTVGIRKFNELVYNDSLVD 215
Query: 171 ICQISIADGVTLCRR 185
           +  + IADGV+L R+
Sbjct: 216 VSLVPIADGVSLVRK 230

>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From Klebsiella Pneumoniae Length = 248

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 15/185 (8%)
Query: 4   SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI 63
           + ++ QF ++L++L  AK  +EIG   GYS +  A  +P DG++L L+    H +     
Sbjct: 48  AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVAREN 107
Query: 64  IQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVG 123
           +Q AGV  ++  REGPAL  L+ L +       FD +F+DADK N  +Y +  +   + G
Sbjct: 108 LQLAGVDQRVTLREGPALQSLESLGECP----AFDLIFIDADKPNNPHYLRWALRYSRPG 163
Query: 124 GVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIA-----D 178
            +I  DN +  G VV P  A  DE    +R F++        +PR+    +        D
Sbjct: 164 TLIIGDNVVRDGEVVNPQSA--DERVQGVRQFIE----XXGAEPRLTATALQTVGTKGWD 217
Query: 179 GVTLC 183
           G TL 
Sbjct: 218 GFTLA 222

>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From Bacillus Cereus Length = 223

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 4   SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI 63
           SP + +F  +L+++  A+N +EIG   GYS +  A  +   G+++ L+ +++H +     
Sbjct: 43  SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSN 102
Query: 64  IQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVG 123
           I++A +  +++ R G AL  L Q I++EKY   FDF+F+DADK N   Y +  ++L + G
Sbjct: 103 IERANLNDRVEVRTGLALDSLQQ-IENEKYE-PFDFIFIDADKQNNPAYFEWALKLSRPG 160
Query: 124 GVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRI 169
            VI  DN +  G V+   +   D     +R F +     +A +PR+
Sbjct: 161 TVIIGDNVVREGEVI--DNTSNDPRVQGIRRFYE----LIAAEPRV 200

>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From Bacillus Halodurans Length = 233

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 7/170 (4%)
Query: 14  LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKI 73
           LLK       +EIG   GYS +  A A+P+   I++++  +  YE+    ++  G+  +I
Sbjct: 49  LLKXAAPARILEIGTAIGYSAIRXAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRI 107
Query: 74  DFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLW 133
           +   G AL L ++L    + +  FD +F+DA K  Y  +       V+ GG+I  DN L+
Sbjct: 108 ELLFGDALQLGEKL----ELYPLFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLF 163
Query: 134 GGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVTLC 183
            G +VA  D +   H   L   +   N+ L   P+ +     + DG+ + 
Sbjct: 164 RG-LVAETDIEHKRH-KQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAIS 211

>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex Length = 221

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 7   EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK 66
           + Q    +++  +    +E+G + GYS +  A  +    ++L +++  ++      ++  
Sbjct: 46  KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNF 105
Query: 67  AGVAHKIDFREGPALPLLDQLIQDEKYH-GTFDFVFVDADKDNYVNYHKRLIE---LVKV 122
           AG+  K+    G +  L+ QL   +KY   T D VF+D  KD Y+     L+E   L++ 
Sbjct: 106 AGLQDKVTILNGASQDLIPQL--KKKYDVDTLDMVFLDHWKDRYLP-DTLLLEKCGLLRK 162
Query: 123 GGVIGYDNTLWGGS 136
           G V+  DN +  G+
Sbjct: 163 GTVLLADNVIVPGT 176

>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O- Methyltransferase Length = 223

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 7   EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK 66
           + Q    +++  +    +E+G + GYS +  A  +    ++L +++  ++      ++  
Sbjct: 48  KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNF 107
Query: 67  AGVAHKIDFREGPALPLLDQLIQDEKYH-GTFDFVFVDADKDNYVNYHKRLIE---LVKV 122
           AG+  K+    G +  L+ QL   +KY   T D VF+D  KD Y+     L+E   L++ 
Sbjct: 108 AGLQDKVTILNGASQDLIPQL--KKKYDVDTLDMVFLDHWKDRYLP-DTLLLEKCGLLRK 164
Query: 123 GGVIGYDNTLWGGS 136
           G V+  DN +  G+
Sbjct: 165 GTVLLADNVIVPGT 178

>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A Catechol-Type, Purine-Containing Bisubstrate Inhibitor - Humanized Form Length = 221

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 7   EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK 66
           + Q    +++  +    +E+G + GYS +  A  +    ++L ++I  +       ++  
Sbjct: 46  KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNF 105
Query: 67  AGVAHKIDFREGPALPLLDQLIQDEKYH-GTFDFVFVDADKDNYVNYHKRLIE---LVKV 122
           AG+  K+    G +  L+ QL   +KY   T D VF+D  KD Y+     L+E   L++ 
Sbjct: 106 AGLQDKVTILNGASQDLIPQL--KKKYDVDTLDMVFLDHWKDRYLP-DTLLLEKCGLLRK 162
Query: 123 GGVIGYDNTLWGGS 136
           G V+  DN +  G+
Sbjct: 163 GTVLLADNVIVPGT 176

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	8e-94
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	1e-88
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	7e-85
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	2e-84
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	3e-84
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	8e-84
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	1e-82
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	2e-81
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	2e-80
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	2e-79
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	2e-78
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	2e-76
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	2e-71
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	3e-69
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	8e-06
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	4e-04
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	6e-04
3ocj_A	305	Putative exported protein; structural genomics, PS	8e-04

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score =  272 bits (697), Expect = 8e-94
 Identities = 147/186 (79%), Positives = 168/186 (90%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF SMLLKLINAKNTMEIGV+TGYSLLATALAIP+DGKILA+DI KE+YE G
Sbjct: 61  MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELG 120

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP+I+KAGV HKIDFREGPALP+LD++I+DEK HG++DF+FVDADKDNY+NYHKRLI+LV
Sbjct: 121 LPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLV 180

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGGVIGYDNTLW GSVVAPPDA L ++  Y RDFV ELNKALAVDPRIEIC + + DG+
Sbjct: 181 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGI 240

Query: 181 TLCRRI 186
           T+CRRI
Sbjct: 241 TICRRI 246

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score =  258 bits (662), Expect = 1e-88
 Identities = 108/186 (58%), Positives = 140/186 (75%), Gaps = 1/186 (0%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TSP   Q  S +LKL+NAK T+E+GVFTGYSLL TAL+IPDDGKI A+D  +E YE G
Sbjct: 52  MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIG 111

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP I+KAGV HKI+F E  A+  LD L+Q ++  G++DF FVDADK NY+ YH+RL++LV
Sbjct: 112 LPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLV 171

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGG++ YDNTLWGG+ VA P++++ +     R+ V ELNK LA DPRIEI  + + DG+
Sbjct: 172 KVGGIVAYDNTLWGGT-VAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDGI 230

Query: 181 TLCRRI 186
           T CRR+
Sbjct: 231 TFCRRL 236

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score =  248 bits (636), Expect = 7e-85
 Identities = 61/185 (32%), Positives = 103/185 (55%), Gaps = 7/185 (3%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M T+P++AQ  ++L+KL+ AK  ++IG FTGYS +A  LA+P DG ++  D+ ++     
Sbjct: 46  MQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALA 105

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
               +KAG++ KI  R  PA   L +LI        +D +++DADK N   Y++  ++L+
Sbjct: 106 KEYWEKAGLSDKIGLRLSPAKDTLAELI-HAGQAWQYDLIYIDADKANTDLYYEESLKLL 164

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           + GG+I  DN L  G V    +   +         ++  N+ +  D R+++  I I DG+
Sbjct: 165 REGGLIAVDNVLRRGQVADEENQSEN------NQLIRLFNQKVYKDERVDMILIPIGDGL 218

Query: 181 TLCRR 185
           TL R+
Sbjct: 219 TLARK 223

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score =  248 bits (635), Expect = 2e-84
 Identities = 73/187 (39%), Positives = 111/187 (59%), Gaps = 7/187 (3%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M  +P++AQF  ML++L  AK  +E+G FTGYS LA +LA+PDDG+++  DI +   +  
Sbjct: 42  MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHA 101

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
            P  ++A   HKI  R GPAL  L  L+ +E     FDF+F+DADK NY+NY++  ++LV
Sbjct: 102 HPYWREAKQEHKIKLRLGPALDTLHSLL-NEGGEHQFDFIFIDADKTNYLNYYELALKLV 160

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
              G+I  DN  W G V+ P D             +++LN+ +  D R+ +  ++IADG+
Sbjct: 161 TPKGLIAIDNIFWDGKVIDPNDTSGQ------TREIKKLNQVIKNDSRVFVSLLAIADGM 214

Query: 181 TLCRRIG 187
            L + I 
Sbjct: 215 FLVQPIA 221

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score =  247 bits (632), Expect = 3e-84
 Identities = 70/186 (37%), Positives = 110/186 (59%), Gaps = 7/186 (3%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
            M + ++AQ  + L +LI AK  +++G FTGYS LA ALA+P DG+++  ++  +  E G
Sbjct: 51  SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELG 110

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
            P+ ++A   HKID R  PAL  LD+L+      GTFD   VDADK+N   Y++R ++L+
Sbjct: 111 RPLWRQAEAEHKIDLRLKPALETLDELL-AAGEAGTFDVAVVDADKENCSAYYERCLQLL 169

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           + GG++     LW G V+ PP  D+        + V+ LN+ +  D R+ I  + + DG+
Sbjct: 170 RPGGILAVLRVLWRGKVLQPPKGDVA------AECVRNLNERIRRDVRVYISLLPLGDGL 223

Query: 181 TLCRRI 186
           TL  +I
Sbjct: 224 TLAFKI 229

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score =  246 bits (630), Expect = 8e-84
 Identities = 77/185 (41%), Positives = 102/185 (55%), Gaps = 7/185 (3%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M  SP++AQF  +L+ L  AK  +EIGVF GYS LA AL +P DG+I+A D         
Sbjct: 54  MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIA 113

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
               QKAGVA KI  R GPAL  L+QL    K    FD +F+DADK NY  Y++  + L+
Sbjct: 114 KKYWQKAGVAEKISLRLGPALATLEQLT-QGKPLPEFDLIFIDADKRNYPRYYEIGLNLL 172

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           + GG++  DN LW G V        +     L+ F    N+ LA D R+ I  I + DG+
Sbjct: 173 RRGGLMVIDNVLWHGKVTEV--DPQEAQTQVLQQF----NRDLAQDERVRISVIPLGDGM 226

Query: 181 TLCRR 185
           TL  +
Sbjct: 227 TLALK 231

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score =  243 bits (622), Expect = 1e-82
 Identities = 70/195 (35%), Positives = 108/195 (55%), Gaps = 16/195 (8%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M  SP+E QF ++L K+  AK  +EIG FTGYS L  A A+P+DGKIL  D+++E     
Sbjct: 42  MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVA 101

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEK----------YHGTFDFVFVDADKDNYV 110
               ++ G+ +KI  + G AL  L  LI  +              + D  F+DADK+NY 
Sbjct: 102 RKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYP 161

Query: 111 NYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIE 170
           NY+  +++L+K GG++  DN LW GSV     +  +   + +R F    N+ +  D  ++
Sbjct: 162 NYYPLILKLLKPGGLLIADNVLWDGSVADL--SHQEPSTVGIRKF----NELVYNDSLVD 215

Query: 171 ICQISIADGVTLCRR 185
           +  + IADGV+L R+
Sbjct: 216 VSLVPIADGVSLVRK 230

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score =  241 bits (616), Expect = 2e-81
 Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 15/189 (7%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
              + ++ QF ++L++L  AK  +EIG   GYS +  A  +P DG++L L+    H +  
Sbjct: 45  HDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVA 104

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
              +Q AGV  ++  REGPAL  L+ L +       FD +F+DADK N  +Y +  +   
Sbjct: 105 RENLQLAGVDQRVTLREGPALQSLESLGEC----PAFDLIFIDADKPNNPHYLRWALRYS 160

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIA--- 177
           + G +I  DN +  G VV P  AD           V++  + +  +PR+    +      
Sbjct: 161 RPGTLIIGDNVVRDGEVVNPQSADER------VQGVRQFIEMMGAEPRLTATALQTVGTK 214

Query: 178 --DGVTLCR 184
             DG TL  
Sbjct: 215 GWDGFTLAW 223

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score =  237 bits (607), Expect = 2e-80
 Identities = 48/190 (25%), Positives = 92/190 (48%), Gaps = 13/190 (6%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
              SP + +F  +L+++  A+N +EIG   GYS +  A  +   G+++ L+ +++H +  
Sbjct: 40  HDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIA 99

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
              I++A +  +++ R G AL  L Q+  ++  +  FDF+F+DADK N   Y +  ++L 
Sbjct: 100 RSNIERANLNDRVEVRTGLALDSLQQIENEK--YEPFDFIFIDADKQNNPAYFEWALKLS 157

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIA--- 177
           + G VI  DN +  G V+     D           ++   + +A +PR+    +      
Sbjct: 158 RPGTVIIGDNVVREGEVIDNTSNDPR------VQGIRRFYELIAAEPRVSATALQTVGSK 211

Query: 178 --DGVTLCRR 185
             DG  +   
Sbjct: 212 GYDGFIMAVV 221

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score =  235 bits (601), Expect = 2e-79
 Identities = 39/185 (21%), Positives = 75/185 (40%), Gaps = 7/185 (3%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
            +           L+++ N KN +EIG   GYS +  A +I DD  +  ++  +   +  
Sbjct: 53  PIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFA-SISDDIHVTTIERNETMIQYA 111

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
              +      +++   EG AL   + +         +D +F+DA K     + +    L+
Sbjct: 112 KQNLATYHFENQVRIIEGNALEQFENVN-----DKVYDMIFIDAAKAQSKKFFEIYTPLL 166

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           K  G++  DN L+ G V          +   +   VQ+ N+ L   P      ++I DG+
Sbjct: 167 KHQGLVITDNVLYHGFVSDIGIVR-SRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGL 225

Query: 181 TLCRR 185
            +  +
Sbjct: 226 AISIK 230

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score =  232 bits (595), Expect = 2e-78
 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 7/185 (3%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
            +      +    LLK+      +EIG   GYS +  A A+P+   I++++  +  YE+ 
Sbjct: 36  PIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPE-ATIVSIERDERRYEEA 94

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
              ++  G+  +I+   G AL L ++L    + +  FD +F+DA K  Y  +      +V
Sbjct: 95  HKHVKALGLESRIELLFGDALQLGEKL----ELYPLFDVLFIDAAKGQYRRFFDMYSPMV 150

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           + GG+I  DN L+ G V              L   +   N+ L   P+ +     + DG+
Sbjct: 151 RPGGLILSDNVLFRGLVAETDIEHKRH--KQLATKIDTYNQWLLEHPQYDTRIFPVGDGI 208

Query: 181 TLCRR 185
            +  +
Sbjct: 209 AISIK 213

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score =  227 bits (580), Expect = 2e-76
 Identities = 32/186 (17%), Positives = 70/186 (37%), Gaps = 14/186 (7%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
            +      +   +L ++   +  +  G   G +    A AI    +++ +D  +++ E  
Sbjct: 38  PIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHA 97

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
             ++   G+  +++ + G  L +              D +F+D D  N  +  +R+   +
Sbjct: 98  RRMLHDNGLIDRVELQVGDPLGIAAGQ-------RDIDILFMDCDVFNGADVLERMNRCL 150

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
               ++   N L  GSV    +   D     LR+F    N  L+         + + +GV
Sbjct: 151 AKNALLIAVNALRRGSVAESHE---DPETAALREF----NHHLSRRRDFFTTIVPVGNGV 203

Query: 181 TLCRRI 186
            L  R+
Sbjct: 204 LLGYRL 209

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score =  214 bits (547), Expect = 2e-71
 Identities = 28/191 (14%), Positives = 64/191 (33%), Gaps = 15/191 (7%)

Query: 1   MMTSPDEAQFFSMLLKLIN---AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHY 57
                   Q  + L    N   +   + I    G   L     + D+  +  +D   EH 
Sbjct: 35  PAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQ 94

Query: 58  EKGLPIIQKAGVA-HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRL 116
            +   + ++AG +  ++ F     L ++ +L  D     ++  VF      +        
Sbjct: 95  RQAKALFREAGYSPSRVRFLLSRPLDVMSRLAND-----SYQLVFGQVSPMDLKALVDAA 149

Query: 117 IELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISI 176
             L++ GG +   + L  G++        D      RD     ++ +       + ++ +
Sbjct: 150 WPLLRRGGALVLADALLDGTIADQ--TRKDRDTQAARDA----DEYIRSIEGAHVARLPL 203

Query: 177 ADGVTLCRRIG 187
             G+T+  +  
Sbjct: 204 GAGLTVVTKAL 214

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score =  209 bits (533), Expect = 3e-69
 Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 16/189 (8%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M     + Q    +++  +    +E+G + GYS +  A  +    ++L ++I  +     
Sbjct: 40  MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAIT 99

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRL--IE 118
             ++  AG+  K+    G +  L+ QL   +    T D VF+D  KD Y+     L    
Sbjct: 100 QQMLNFAGLQDKVTILNGASQDLIPQLK-KKYDVDTLDMVFLDHWKDRYLPDTLLLEKCG 158

Query: 119 LVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIAD 178
           L++ G V+  DN +  G    P              +V+  +          +  + + D
Sbjct: 159 LLRKGTVLLADNVIVPG---TPDF----------LAYVRGSSSFECTHYSSYLEYMKVVD 205

Query: 179 GVTLCRRIG 187
           G+      G
Sbjct: 206 GLEKAIYQG 214

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236

 Score = 43.7 bits (102), Expect = 8e-06
 Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 17/139 (12%)

Query: 19  NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG 78
                +E+G     +  A+ +      +   ++     +++      +    HK+   +G
Sbjct: 60  KGGRVLEVGFGMAIA--ASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKG 115

Query: 79  PALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKR--------LIELVKVGGVIGYDN 130
               +   L       G FD +  D    +   +H             L+K GGV+ Y N
Sbjct: 116 LWEDVAPTLPD-----GHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170

Query: 131 TLWGGSVVAPPDADLDEHF 149
               G ++    +D+   F
Sbjct: 171 LTSWGELMKSKYSDITIMF 189

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 14/142 (9%)

Query: 30  TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA--LPLLDQL 87
           +G   L+ ALA   D  I ALD +K   E  L  I  A +  +I   +G    +P+ D  
Sbjct: 52  SGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED-- 109

Query: 88  IQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKV---GGVIGYDNTLWGGSVVAPPDAD 144
                     D +        + +      E+ ++   GG            +     A+
Sbjct: 110 -------NYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAE 162

Query: 145 LDEHFLYLRDFVQELNKALAVD 166
           +       ++F ++      V+
Sbjct: 163 MIRKNPDWKEFNRKNISQENVE 184

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 8/103 (7%)

Query: 2   MTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGL 61
           +  P ++ F +M+L +      ++ GV +G      A A+   GK+ A +  +E  +   
Sbjct: 95  IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAE 154

Query: 62  PIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDA 104
             + K G+  ++  +           I +       D +F+D 
Sbjct: 155 SNLTKWGLIERVTIKVRD--------ISEGFDEKDVDALFLDV 189

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 38.1 bits (88), Expect = 8e-04
 Identities = 21/152 (13%), Positives = 43/152 (28%), Gaps = 20/152 (13%)

Query: 25  EIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84
            +       LLA   +     +++ +D   E  +    +     +A +I      A  L 
Sbjct: 124 SVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL- 182

Query: 85  DQLIQDEKYHGTFDFVFVD------ADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVV 138
                       +D +  +       D       ++R  + +K GG +          + 
Sbjct: 183 -------DTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF------LT 229

Query: 139 APPDADLDEHFLYLRDFVQELNKALAVDPRIE 170
            PP    D  +        +L     V  R+ 
Sbjct: 230 PPPALSPDSPWDMQAIDPHDLQLQQLVFTRLI 261

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	100.0
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	100.0
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	100.0
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	100.0
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	100.0
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	100.0
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	100.0
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	100.0
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	100.0
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.98
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.97
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.97
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.96
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.95
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.85
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	99.83
2o07_A	304	Spermidine synthase; structural genomics, structur	99.8
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.79
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.78
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.76
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.76
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.76
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.76
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.75
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.75
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.75
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.75
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.74
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.74
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.74
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.74
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.74
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.73
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.72
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.72
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.72
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.72
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.72
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.71
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.71
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.71
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.71
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.7
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.7
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.7
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.7
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.7
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.7
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.69
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.69
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.69
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.69
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.68
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.68
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.68
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.68
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.68
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.68
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.67
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.67
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.67
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.67
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.67
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.67
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.66
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.66
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.66
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.66
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.66
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.66
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.66
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.66
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.65
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.65
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.65
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.65
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.65
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.65
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.65
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.65
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.64
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.64
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.64
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.64
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.64
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.63
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.63
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.63
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.63
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.63
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.63
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.63
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.62
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.62
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.62
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.62
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.62
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.62
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.62
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.62
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.62
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.62
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.62
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.62
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.62
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.62
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.61
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.61
3ocj_A	305	Putative exported protein; structural genomics, PS	99.61
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.61
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.61
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.61
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.61
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.61
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.61
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.6
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.6
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.6
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.6
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.6
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.6
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.6
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.6
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.6
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.6
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.6
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.6
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.6
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.6
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.6
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.59
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.59
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.59
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.59
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.59
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.59
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.59
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.59
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.58
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.58
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.58
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.58
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.58
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.57
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.57
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.57
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.57
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.57
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.57
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.57
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.57
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.56
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.56
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.56
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.56
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.56
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.55
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.55
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.54
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.54
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.54
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.54
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.54
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.53
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.53
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.53
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.53
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.53
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.53
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.53
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.53
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.53
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.52
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.52
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.52
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.52
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.52
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.52
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.52
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.51
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.51
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.51
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.51
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.5
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.5
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.5
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.5
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.5
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.5
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.5
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.5
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.49
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.49
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.48
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.48
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.48
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.48
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.48
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.48
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.48
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.47
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.47
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.47
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.47
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.47
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.47
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.46
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.46
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.46
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.46
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.46
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.46
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.46
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.45
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.45
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.45
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.45
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.44
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.44
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.44
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.42
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.42
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.42
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.41
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.38
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	99.38
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.37
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.37
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	99.36
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.36
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.35
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.35
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.34
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.34
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.33
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.33
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.33
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.33
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.31
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.3
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.3
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.3
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.3
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.29
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.28
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.27
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.27
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.27
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.26
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.26
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.26
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.25
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.25
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.25
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.23
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.21
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.21
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.21
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.2
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.2
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.19
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.17
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.15
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.13
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.12
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.08
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.08
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.06
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.05
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.04
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.02
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.01
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.01
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.99
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.95
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.94
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.93
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.9
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.88
3lkd_A	542	Type I restriction-modification system methyltrans	98.85
3khk_A	544	Type I restriction-modification system methylation	98.85
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.81
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.79
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.73
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.72
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.62
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.61
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.29
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.28
3ufb_A	530	Type I restriction-modification system methyltran	98.27
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.13
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	98.04
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.01
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.98
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.93
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.91
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.88
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.79
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.74
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.7
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.55
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.54
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.53
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.5
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.41
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.36
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.35
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.28
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.25
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.22
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.19
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.16
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.15
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.09
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.03
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.98
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	96.96
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.95
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.94
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.91
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.89
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.88
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.88
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.88
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.87
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.84
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.84
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.84
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.83
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.82
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.81
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.79
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.78
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.78
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.77
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.74
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.72
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.72
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.69
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.66
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.64
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.64
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.63
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.61
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.59
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.59
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.55
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.55
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.52
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	96.51
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.5
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.47
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.45
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.39
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.38
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	96.27
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.26
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.25
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.24
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.2
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.18
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.13
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.09
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.0
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.98
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.95
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.84
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.82
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	95.77
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.68
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.62
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.6
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.54
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.5
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.33
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.26
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	95.09
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.06
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.03
3me5_A	482	Cytosine-specific methyltransferase; structural ge	95.02
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	94.98
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.95
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	94.95
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	94.94
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.7
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.68
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	94.64
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.63
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	94.59
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	94.55
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.5
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	94.49
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.44
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	94.39
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	94.25
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	94.23
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	94.19
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.18
3t8y_A	164	CHEB, chemotaxis response regulator protein-glutam	94.1
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	94.0
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.98
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	93.95
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	93.76
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.62
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.59
1lnq_A	336	MTHK channels, potassium channel related protein;	93.5
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.46
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.37
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	93.31
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	93.27
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	93.25
3f6c_A	134	Positive transcription regulator EVGA; structural	93.25
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	93.16
3hzh_A	157	Chemotaxis response regulator (CHEY-3); phosphatas	93.14
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.08
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.06
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	93.06
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	92.85
3eul_A	152	Possible nitrate/nitrite response transcriptional	92.77
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	92.73
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	92.69
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	92.59
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	92.56
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	92.45
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.36
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	92.28
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	92.25
4ezb_A	317	Uncharacterized conserved protein; structural geno	92.21
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	92.21
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	92.2
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	92.17
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	92.15
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	92.14
3eod_A	130	Protein HNR; response regulator, phosphoprotein, t	91.85
2zay_A	147	Response regulator receiver protein; structural ge	91.79
3hv2_A	153	Response regulator/HD domain protein; PSI-2, NYSGX	91.77
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	91.76
3kht_A	144	Response regulator; PSI-II, 11023K, structural gen	91.76
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	91.66
4e7p_A	150	Response regulator; DNA binding, cytosol, transcri	91.37
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	91.35
3i42_A	127	Response regulator receiver domain protein (CHEY-	91.32
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	91.26
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	91.12
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	91.11
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	91.11
2rjn_A	154	Response regulator receiver:metal-dependent phosph	91.05
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	90.97
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	90.86
3cz5_A	153	Two-component response regulator, LUXR family; str	90.84
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	90.68
3kto_A	136	Response regulator receiver protein; PSI-II,struct	90.62
3rqi_A	184	Response regulator protein; structural genomics, s	90.62
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	90.52
3rih_A	293	Short chain dehydrogenase or reductase; structural	90.51
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	90.41
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	90.36
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	90.29
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	90.26
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	90.22
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	90.22
3cg0_A	140	Response regulator receiver modulated diguanylate	90.17
3to5_A	134	CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p	90.13
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	90.13
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	90.09
2qr3_A	140	Two-component system response regulator; structura	90.06
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	90.06
3grc_A	140	Sensor protein, kinase; protein structure initiati	90.05
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	90.02
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	89.99
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	89.94
3ilh_A	146	Two component response regulator; NYSGXRC, PSI-II,	89.9
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	89.82
1qkk_A	155	DCTD, C4-dicarboxylate transport transcriptional r	89.69
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	89.56
3lua_A	140	Response regulator receiver protein; two-component	89.55
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	89.36
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	89.33
3cnb_A	143	DNA-binding response regulator, MERR family; signa	89.18
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	89.17
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	89.16
1tmy_A	120	CHEY protein, TMY; chemotaxis, phosphoryl transfer	89.15
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	89.01
3cg4_A	142	Response regulator receiver domain protein (CHEY-;	88.82
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	88.79
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	88.67
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	88.66
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	88.64
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	88.63
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	88.54
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	88.52
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	88.47
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	88.4
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	88.4
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	88.36
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	88.34
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	88.31
3a10_A	116	Response regulator; phosphoacceptor, signaling pro	88.23

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=100.00  E-value=6.2e-34  Score=215.64  Aligned_cols=180  Identities=40%  Similarity=0.713  Sum_probs=161.5

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |++++++++++..++...++++|||||||+|++++++++.++++++|+++|+++++++.|+++++..++.++++++++|+
T Consensus        42 ~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  121 (242)
T 3r3h_A           42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA  121 (242)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            57899999999999999999999999999999999999988767999999999999999999999999988999999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN  160 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+.+.+ ..++||+||+|++...+..+++.+.++|+|||+|+++|+.|.|.+.++...+      .....+++|+
T Consensus       122 ~~~l~~~~~~~-~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~------~~~~~~~~~~  194 (242)
T 3r3h_A          122 LDTLHSLLNEG-GEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTS------GQTREIKKLN  194 (242)
T ss_dssp             HHHHHHHHHHH-CSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCC------HHHHHHHHHH
T ss_pred             HHHHHHHhhcc-CCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccC------hHHHHHHHHH
Confidence            98877653221 0268999999999888999999999999999999999999999988776543      3456899999


Q ss_pred             HHHhcCCCeeEEEeecCCeeEEEEEcC
Q 029836          161 KALAVDPRIEICQISIADGVTLCRRIG  187 (187)
Q Consensus       161 ~~~~~~~~~~~~~~p~~~G~~i~~k~~  187 (187)
                      +.+..++++..+++|+++|+.+++|++
T Consensus       195 ~~l~~~~~~~~~~lp~~dG~~~~~k~~  221 (242)
T 3r3h_A          195 QVIKNDSRVFVSLLAIADGMFLVQPIA  221 (242)
T ss_dssp             HHHHTCCSEEEEEESSSSCEEEEEEC-
T ss_pred             HHHhhCCCEEEEEEEccCceEEEEEcC
Confidence            999999999999999999999999974

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=7.9e-34  Score=212.31  Aligned_cols=173  Identities=14%  Similarity=0.273  Sum_probs=157.5

Q ss_pred             CCCHHHHHHHHHHHhhcCCC---EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEEEe
Q 029836            2 MTSPDEAQFFSMLLKLINAK---NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFRE   77 (187)
Q Consensus         2 ~~~~~~~~~l~~l~~~~~~~---~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~~~   77 (187)
                      .+++.+++++..++...+++   +|||||||+|+++.++++.++++++|+++|+++++++.|+++++..++. +++++++
T Consensus        36 ~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~  115 (221)
T 3dr5_A           36 APDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLL  115 (221)
T ss_dssp             CCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC
T ss_pred             CCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEE
Confidence            46899999999999998888   9999999999999999998876799999999999999999999999997 7999999


Q ss_pred             CCchHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHH
Q 029836           78 GPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQ  157 (187)
Q Consensus        78 ~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (187)
                      +|+.+.++.+.     .++||+||+|++...+..+++.+.++|+|||+++++|+.|.|.+.++...+      .....++
T Consensus       116 gda~~~l~~~~-----~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~------~~~~~~~  184 (221)
T 3dr5_A          116 SRPLDVMSRLA-----NDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKD------RDTQAAR  184 (221)
T ss_dssp             SCHHHHGGGSC-----TTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCC------HHHHHHH
T ss_pred             cCHHHHHHHhc-----CCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCC------hHHHHHH
Confidence            99998876542     468999999999899999999999999999999999999999987775543      3445789


Q ss_pred             HHHHHHhcCCCeeEEEeecCCeeEEEEE
Q 029836          158 ELNKALAVDPRIEICQISIADGVTLCRR  185 (187)
Q Consensus       158 ~~~~~~~~~~~~~~~~~p~~~G~~i~~k  185 (187)
                      +|++.+..+++++.+++|+|+|+.+++|
T Consensus       185 ~~~~~l~~~~~~~~~~lp~gdGl~~~~~  212 (221)
T 3dr5_A          185 DADEYIRSIEGAHVARLPLGAGLTVVTK  212 (221)
T ss_dssp             HHHHHHTTCTTEEEEEESSTTCEEEEEE
T ss_pred             HHHHHHhhCCCeeEEEeeccchHHHHHH
Confidence            9999999999999999999999999997

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=100.00  E-value=9.3e-33  Score=208.54  Aligned_cols=185  Identities=58%  Similarity=0.975  Sum_probs=162.8

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |++++++++++..++...++++|||||||+|+++.++++.++++++++++|+++++++.|+++++..++.++++++++|+
T Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  131 (237)
T 3c3y_A           52 MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA  131 (237)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            46789999999999999999999999999999999999998767999999999999999999999999877899999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN  160 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+...+...++||+||+|+++..+..+++.+.++|+|||+++++|+.|.|.+..+.... .+..+.....+++|+
T Consensus       132 ~~~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~-~~~~r~~~~~i~~~~  210 (237)
T 3c3y_A          132 MLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEV-PDFMKENREAVIELN  210 (237)
T ss_dssp             HHHHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGS-CGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccc-hhhHHHHHHHHHHHH
Confidence            9887765322100368999999999889999999999999999999999999999887663321 224456778899999


Q ss_pred             HHHhcCCCeeEEEeecCCeeEEEEEc
Q 029836          161 KALAVDPRIEICQISIADGVTLCRRI  186 (187)
Q Consensus       161 ~~~~~~~~~~~~~~p~~~G~~i~~k~  186 (187)
                      +.+..++++..+++|+++|+.+++|+
T Consensus       211 ~~l~~~~~~~~~~lp~~dG~~~~~~~  236 (237)
T 3c3y_A          211 KLLAADPRIEIVHLPLGDGITFCRRL  236 (237)
T ss_dssp             HHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHhcCCCeEEEEEEeCCceEEEEEc
Confidence            99999999999999999999999986

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=100.00  E-value=7.5e-33  Score=210.26  Aligned_cols=186  Identities=79%  Similarity=1.283  Sum_probs=162.6

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |++++.+++++..++...++++|||||||+|+++.++++.++++++++++|+++.+++.|+++++..++.++++++++|+
T Consensus        61 ~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda  140 (247)
T 1sui_A           61 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  140 (247)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH
Confidence            56889999999999999999999999999999999999998767899999999999999999999999878999999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN  160 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+...+...++||+||+|++...+..+++.+.++|+|||+++++|++|.|.+..+.........+.....+++|+
T Consensus       141 ~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~i~~~~  220 (247)
T 1sui_A          141 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELN  220 (247)
T ss_dssp             HHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEECTTGGGGGGCCTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEecCCcCCcccCCCccchhhhhhHHHHHHHHHH
Confidence            98877653211003689999999988889999999999999999999999999999887754322222245678899999


Q ss_pred             HHHhcCCCeeEEEeecCCeeEEEEEc
Q 029836          161 KALAVDPRIEICQISIADGVTLCRRI  186 (187)
Q Consensus       161 ~~~~~~~~~~~~~~p~~~G~~i~~k~  186 (187)
                      +.+..++++...++|+++|+.+++|+
T Consensus       221 ~~l~~~~~~~~~~lp~~dG~~l~~k~  246 (247)
T 1sui_A          221 KALAVDPRIEICMLPVGDGITICRRI  246 (247)
T ss_dssp             HHHHTCTTBCCEEECSTTCEEEECBC
T ss_pred             HHHhhCCCeEEEEEecCCccEEEEEc
Confidence            99999999999999999999999986

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=100.00  E-value=5.9e-32  Score=202.10  Aligned_cols=180  Identities=34%  Similarity=0.592  Sum_probs=160.7

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |++++..++++..++...++.+|||+|||+|.++.++++.++++++|+++|+++.+++.++++++..++.++++++++|+
T Consensus        46 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  125 (225)
T 3tr6_A           46 MQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA  125 (225)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH
Confidence            46789999999999999999999999999999999999988767899999999999999999999999988899999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN  160 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++...... ..++||+|++|++...+..+++.+.++|+|||+++++|+.|.|.+..+....      .....+++|+
T Consensus       126 ~~~~~~~~~~~-~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~------~~~~~~~~~~  198 (225)
T 3tr6_A          126 KDTLAELIHAG-QAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQS------ENNQLIRLFN  198 (225)
T ss_dssp             HHHHHHHHTTT-CTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCC------HHHHHHHHHH
T ss_pred             HHHHHHhhhcc-CCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccC------hHHHHHHHHH
Confidence            88877653210 0168999999998888999999999999999999999999999887776543      3456889999


Q ss_pred             HHHhcCCCeeEEEeecCCeeEEEEEcC
Q 029836          161 KALAVDPRIEICQISIADGVTLCRRIG  187 (187)
Q Consensus       161 ~~~~~~~~~~~~~~p~~~G~~i~~k~~  187 (187)
                      +.+..++++..+++|+++|+.+++|+|
T Consensus       199 ~~l~~~~~~~~~~lp~~dG~~~~~k~~  225 (225)
T 3tr6_A          199 QKVYKDERVDMILIPIGDGLTLARKKS  225 (225)
T ss_dssp             HHHHHCTTEEEEEECSTTCEEEEEECC
T ss_pred             HHHhcCCCeEEEEEEcCCccEEEEECC
Confidence            999999999999999999999999987

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=100.00  E-value=1.3e-31  Score=201.52  Aligned_cols=177  Identities=21%  Similarity=0.277  Sum_probs=158.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +.+...+++..++...++.+|||||||+|.++.++++..+ +.+|+++|+++.+++.|+++++..++.++++++++|+.+
T Consensus        55 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (232)
T 3ntv_A           55 VDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALE  133 (232)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHH
Confidence            5788999999999999999999999999999999998665 789999999999999999999999987899999999998


Q ss_pred             HHH-HHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHH
Q 029836           83 LLD-QLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNK  161 (187)
Q Consensus        83 ~l~-~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (187)
                      .++ ..      .++||+||++.+...+..+++.+.++|+|||+++++|+.|.|.+..+... .++........+++|++
T Consensus       134 ~~~~~~------~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~-~~~~~~~~~~~~~~~~~  206 (232)
T 3ntv_A          134 QFENVN------DKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIV-RSRNVRQMVKKVQDYNE  206 (232)
T ss_dssp             CHHHHT------TSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGG-GCHHHHHHHHHHHHHHH
T ss_pred             HHHhhc------cCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccc-cchhhhHHHHHHHHHHH
Confidence            877 55      57899999999988999999999999999999999999999988766441 12344566788999999


Q ss_pred             HHhcCCCeeEEEeecCCeeEEEEEcC
Q 029836          162 ALAVDPRIEICQISIADGVTLCRRIG  187 (187)
Q Consensus       162 ~~~~~~~~~~~~~p~~~G~~i~~k~~  187 (187)
                      .+..++++...++|+++|+.+++|+|
T Consensus       207 ~l~~~~~~~~~~lp~~dG~~i~~k~~  232 (232)
T 3ntv_A          207 WLIKQPGYTTNFLNIDDGLAISIKGE  232 (232)
T ss_dssp             HHHTCTTEEEEEECSTTCEEEEEEC-
T ss_pred             HHhcCCCeEEEEEEcCCceEEEEECC
Confidence            99999999999999999999999997

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=100.00  E-value=1.8e-31  Score=200.84  Aligned_cols=179  Identities=42%  Similarity=0.659  Sum_probs=159.8

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |++++.+++++..++...++++|||||||+|+++.++++.++++++++++|+++.+++.|+++++..++.++++++++|+
T Consensus        54 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~  133 (232)
T 3cbg_A           54 MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA  133 (232)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cCcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            57899999999999998899999999999999999999988766899999999999999999999999877899999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN  160 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+.... ..++||+||+|.+...+..+++.+.++|+|||+++++|+.|.|.+..+...      ......+++|+
T Consensus       134 ~~~l~~l~~~~-~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~------~~~~~~~~~~~  206 (232)
T 3cbg_A          134 LATLEQLTQGK-PLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQ------EAQTQVLQQFN  206 (232)
T ss_dssp             HHHHHHHHTSS-SCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCC------SHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-CCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccC------ChHHHHHHHHH
Confidence            88777654210 016899999999888899999999999999999999999999998776543      35667899999


Q ss_pred             HHHhcCCCeeEEEeecCCeeEEEEEc
Q 029836          161 KALAVDPRIEICQISIADGVTLCRRI  186 (187)
Q Consensus       161 ~~~~~~~~~~~~~~p~~~G~~i~~k~  186 (187)
                      +.+..++++..+++|+++|+.+++|+
T Consensus       207 ~~l~~~~~~~~~~lp~~dG~~~~~~~  232 (232)
T 3cbg_A          207 RDLAQDERVRISVIPLGDGMTLALKK  232 (232)
T ss_dssp             HHHTTCTTEEEEEECSBTCEEEEEEC
T ss_pred             HHHhhCCCeEEEEEEcCCeEEEEEeC
Confidence            99999999999999999999999985

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=100.00  E-value=1.1e-30  Score=194.95  Aligned_cols=178  Identities=27%  Similarity=0.484  Sum_probs=160.0

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |++++..++++..++...++.+|||||||+|.++.++++.++++++++++|+++.+++.|+++++..++.++++++++|+
T Consensus        40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  119 (223)
T 3duw_A           40 HDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLA  119 (223)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            56789999999999999999999999999999999999998766899999999999999999999999988899999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN  160 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+....  .++||+||+|+....+..+++.+.++|+|||+++++|+.|.|.+..+....      .....+++|+
T Consensus       120 ~~~~~~~~~~~--~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~------~~~~~~~~~~  191 (223)
T 3duw_A          120 LDSLQQIENEK--YEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSND------PRVQGIRRFY  191 (223)
T ss_dssp             HHHHHHHHHTT--CCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCC------HHHHHHHHHH
T ss_pred             HHHHHHHHhcC--CCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccc------hHHHHHHHHH
Confidence            88877664321  257999999999888899999999999999999999999999887766543      4567889999


Q ss_pred             HHHhcCCCeeEEEeec-----CCeeEEEEEc
Q 029836          161 KALAVDPRIEICQISI-----ADGVTLCRRI  186 (187)
Q Consensus       161 ~~~~~~~~~~~~~~p~-----~~G~~i~~k~  186 (187)
                      +.+..++++...++|+     ++|+.+++++
T Consensus       192 ~~l~~~~~~~~~~~p~~~~~~~dG~~~~~~~  222 (223)
T 3duw_A          192 ELIAAEPRVSATALQTVGSKGYDGFIMAVVK  222 (223)
T ss_dssp             HHHHHCTTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             HHHhhCCCeEEEEEeccCCCCCCeeEEEEEe
Confidence            9999999999999999     9999999986

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=100.00  E-value=8.4e-31  Score=199.06  Aligned_cols=177  Identities=32%  Similarity=0.514  Sum_probs=158.8

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |++++..++++..++...++++|||||||+|.++.++++.++++++|+++|+++.+++.|+++++..++.++++++++|+
T Consensus        45 ~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~  124 (248)
T 3tfw_A           45 HDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPA  124 (248)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            46789999999999999999999999999999999999988767899999999999999999999999988999999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN  160 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++...    ..++||+||+|.+...+..+++.+.++|+|||+|+++|+.|.|.+..+...      ......+++|+
T Consensus       125 ~~~l~~~~----~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~------~~~~~~~~~~~  194 (248)
T 3tfw_A          125 LQSLESLG----ECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSA------DERVQGVRQFI  194 (248)
T ss_dssp             HHHHHTCC----SCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCC------CHHHHHHHHHH
T ss_pred             HHHHHhcC----CCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCcccc------chHHHHHHHHH
Confidence            88777651    024899999999988899999999999999999999999999988776654      35667899999


Q ss_pred             HHHhcCCCeeEEEe-ecC----CeeEEEEEcC
Q 029836          161 KALAVDPRIEICQI-SIA----DGVTLCRRIG  187 (187)
Q Consensus       161 ~~~~~~~~~~~~~~-p~~----~G~~i~~k~~  187 (187)
                      +.+..++++..+++ |++    +|+.+++|++
T Consensus       195 ~~l~~~~~~~~~~l~~~g~~~~DG~~i~~~~~  226 (248)
T 3tfw_A          195 EMMGAEPRLTATALQTVGTKGWDGFTLAWVNA  226 (248)
T ss_dssp             HHHHHCTTEEEEEEEECSTTCSEEEEEEEECC
T ss_pred             HHHhhCCCEEEEEeecCCCCCCCeeEEEEEeC
Confidence            99999999998888 676    9999999985

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.98  E-value=2e-30  Score=194.29  Aligned_cols=179  Identities=39%  Similarity=0.668  Sum_probs=159.2

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |.+++..++++..++...++++|||||||+|.++.++++.++++++++++|+++.+++.++++++..+..++++++++|+
T Consensus        51 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~  130 (229)
T 2avd_A           51 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  130 (229)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCH
Confidence            46788999999999999999999999999999999999988756899999999999999999999999888999999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN  160 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+...+ ..++||+|++|++...+..+++.+.++|+|||+++++|+.|.|.+..+...      ......+++|+
T Consensus       131 ~~~~~~~~~~~-~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~------~~~~~~~~~~~  203 (229)
T 2avd_A          131 LETLDELLAAG-EAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKG------DVAAECVRNLN  203 (229)
T ss_dssp             HHHHHHHHHTT-CTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTT------CHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-CCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccC------ChHHHHHHHHH
Confidence            88777653210 016899999999888899999999999999999999999999988776543      35677899999


Q ss_pred             HHHhcCCCeeEEEeecCCeeEEEEEc
Q 029836          161 KALAVDPRIEICQISIADGVTLCRRI  186 (187)
Q Consensus       161 ~~~~~~~~~~~~~~p~~~G~~i~~k~  186 (187)
                      +.+..++++..+++|+++|+.+++|+
T Consensus       204 ~~l~~~~~~~~~~lp~~dGl~~~~k~  229 (229)
T 2avd_A          204 ERIRRDVRVYISLLPLGDGLTLAFKI  229 (229)
T ss_dssp             HHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHhhCCCEEEEEEecCCceEEEEEC
Confidence            99999999999999999999999985

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.97  E-value=1.4e-29  Score=187.53  Aligned_cols=172  Identities=17%  Similarity=0.236  Sum_probs=146.9

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            2 MTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         2 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      .+++....++..++...++++|||||||+|.++.++++.++++++++++|+++.+++.|+++++..++.++++++++|+.
T Consensus        39 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  118 (210)
T 3c3p_A           39 IVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPL  118 (210)
T ss_dssp             CCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHH
Confidence            36788999999998888999999999999999999999887568999999999999999999999888778999999998


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHH
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNK  161 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (187)
                      +.++..      .+ ||+|++|.....+..+++.+.++|+|||+++++|+.|.|.+..+ .      .......+++|++
T Consensus       119 ~~~~~~------~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~-~------~~~~~~~~~~~~~  184 (210)
T 3c3p_A          119 GIAAGQ------RD-IDILFMDCDVFNGADVLERMNRCLAKNALLIAVNALRRGSVAES-H------EDPETAALREFNH  184 (210)
T ss_dssp             HHHTTC------CS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEESSSSCC-------------------CCCHHHH
T ss_pred             HHhccC------CC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEECccccCcccCc-c------cchHHHHHHHHHH
Confidence            776544      45 99999998888899999999999999999999999998876533 1      1344566788999


Q ss_pred             HHhcCCCeeEEEeecCCeeEEEEEcC
Q 029836          162 ALAVDPRIEICQISIADGVTLCRRIG  187 (187)
Q Consensus       162 ~~~~~~~~~~~~~p~~~G~~i~~k~~  187 (187)
                      .+..++++....+|+++|+.+++|+|
T Consensus       185 ~l~~~~~~~~~~~p~~~G~~~~~~~~  210 (210)
T 3c3p_A          185 HLSRRRDFFTTIVPVGNGVLLGYRLS  210 (210)
T ss_dssp             HHTTCTTEEEEEECSTTCEEEEEECC
T ss_pred             HHhhCCCeEEEEEecCCceEEEEeCC
Confidence            99999999999999999999999986

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.97  E-value=2e-28  Score=184.85  Aligned_cols=180  Identities=38%  Similarity=0.601  Sum_probs=157.5

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |.+++...+++..++...++++|||||||+|.++.++++.++++++++++|+++.+++.|+++++..+..++++++++|+
T Consensus        42 ~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~  121 (239)
T 2hnk_A           42 MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA  121 (239)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH
Confidence            57889999999999999999999999999999999999988756899999999999999999999998877799999999


Q ss_pred             hHHHHHHhhc--------ccCC--CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhh
Q 029836           81 LPLLDQLIQD--------EKYH--GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFL  150 (187)
Q Consensus        81 ~~~l~~~~~~--------~~~~--~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~  150 (187)
                      .+.++.+...        ....  ++||+|+++.....+..+++.+.++|+|||+++++++.|.|.+..+...      .
T Consensus       122 ~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~------~  195 (239)
T 2hnk_A          122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQ------E  195 (239)
T ss_dssp             HHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCC------C
T ss_pred             HHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCcccc------c
Confidence            8876654211        0001  6899999998888889999999999999999999999999987766543      3


Q ss_pred             hHHHHHHHHHHHHhcCCCeeEEEeecCCeeEEEEEc
Q 029836          151 YLRDFVQELNKALAVDPRIEICQISIADGVTLCRRI  186 (187)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~G~~i~~k~  186 (187)
                      .....+++|++.+..++++...++|+++|+.+++|+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~  231 (239)
T 2hnk_A          196 PSTVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKR  231 (239)
T ss_dssp             HHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             hHHHHHHHHHHHHhhCCCeEEEEEEcCCceEeeeeh
Confidence            566788999999999999999999999999999986

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.96  E-value=4.4e-28  Score=180.90  Aligned_cols=165  Identities=22%  Similarity=0.358  Sum_probs=141.7

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |+++++.++++..++...++++|||||||+|.++.++++.++++++|+++|+++.+++.|+++++..++.++++++++|+
T Consensus        40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  119 (221)
T 3u81_A           40 MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS  119 (221)
T ss_dssp             GGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCH
Confidence            56889999999999999999999999999999999999987667899999999999999999999999977899999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHH---HHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVN---YHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQ  157 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (187)
                      .+.++.+.... ..++||+||+|+....+..   +++.+ ++|+|||+++++|+.+.+.                    .
T Consensus       120 ~~~l~~~~~~~-~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~--------------------~  177 (221)
T 3u81_A          120 QDLIPQLKKKY-DVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPGT--------------------P  177 (221)
T ss_dssp             HHHGGGTTTTS-CCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCCC--------------------H
T ss_pred             HHHHHHHHHhc-CCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcch--------------------H
Confidence            88776652110 0168999999998666654   45555 9999999999999987542                    5


Q ss_pred             HHHHHHhcCCCeeEEEee-------cCCeeEEEEEcC
Q 029836          158 ELNKALAVDPRIEICQIS-------IADGVTLCRRIG  187 (187)
Q Consensus       158 ~~~~~~~~~~~~~~~~~p-------~~~G~~i~~k~~  187 (187)
                      +|.+.+..++++....+|       .++|+.+++++|
T Consensus       178 ~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~g  214 (221)
T 3u81_A          178 DFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQG  214 (221)
T ss_dssp             HHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEECC
T ss_pred             HHHHHHhhCCCceEEEcccccccCCCCCceEEEEEeC
Confidence            677888899999999998       799999999986

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.95  E-value=2.5e-26  Score=172.54  Aligned_cols=178  Identities=25%  Similarity=0.401  Sum_probs=139.0

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            2 MTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         2 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      .+.+....++..++...++.+|||+|||+|.++..+++.++ +.+++++|+++.+++.|+++++..+..++++++++|+.
T Consensus        37 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  115 (233)
T 2gpy_A           37 IMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDAL  115 (233)
T ss_dssp             CCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGG
T ss_pred             CcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHH
Confidence            36788999999999888999999999999999999999886 68999999999999999999999998778999999998


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHH
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNK  161 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (187)
                      +.++....    .++||+|+++.....+..+++.+.++|+|||+++++|+.|.+.+..++..  .+........+++|+.
T Consensus       116 ~~~~~~~~----~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~  189 (233)
T 2gpy_A          116 QLGEKLEL----YPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNVLFRGLVAETDIE--HKRHKQLATKIDTYNQ  189 (233)
T ss_dssp             GSHHHHTT----SCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEETTTC---------------------------C
T ss_pred             HHHHhccc----CCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEcCCcCCccCCcccc--ccchhHHHHHHHHHHH
Confidence            86665421    35899999998877889999999999999999999999998876543321  1111233456778888


Q ss_pred             HHhcCCCeeEEEeecCCeeEEEEEc
Q 029836          162 ALAVDPRIEICQISIADGVTLCRRI  186 (187)
Q Consensus       162 ~~~~~~~~~~~~~p~~~G~~i~~k~  186 (187)
                      .+..++++...++|+++|+.+++|+
T Consensus       190 ~l~~~~~~~~~~~p~~dG~~~~~~~  214 (233)
T 2gpy_A          190 WLLEHPQYDTRIFPVGDGIAISIKR  214 (233)
T ss_dssp             TTTTCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHhCCCeEEEEEEcCCeEEEEEEc
Confidence            8999999999999999999999986

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.85  E-value=2.3e-20  Score=136.49  Aligned_cols=127  Identities=14%  Similarity=0.079  Sum_probs=102.2

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC--CCceEEEeC
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV--AHKIDFREG   78 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~--~~~i~~~~~   78 (187)
                      +.++++++++|+.  ...++++||||||  |+|++++++. + +++|+++|.++++.+.|++++++.|+  .++++++.+
T Consensus        14 ~~v~~~~~~~L~~--~l~~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~g   87 (202)
T 3cvo_A           14 LTMPPAEAEALRM--AYEEAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWT   87 (202)
T ss_dssp             CCSCHHHHHHHHH--HHHHCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEEC
T ss_pred             ccCCHHHHHHHHH--HhhCCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEe
Confidence            3578999999998  4457899999998  6899999984 4 69999999999999999999999998  789999999


Q ss_pred             CchHH--------------HHHHhhcc---cCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           79 PALPL--------------LDQLIQDE---KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        79 d~~~~--------------l~~~~~~~---~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      ++.+.              ++.+..+.   ...++||+||+|+.+.  ..++..+.++|++||+|++||+.+..
T Consensus        88 da~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--~~~~~~~l~~l~~GG~Iv~DNv~~r~  159 (202)
T 3cvo_A           88 DIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR--VGCALATAFSITRPVTLLFDDYSQRR  159 (202)
T ss_dssp             CCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH--HHHHHHHHHHCSSCEEEEETTGGGCS
T ss_pred             CchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc--hhHHHHHHHhcCCCeEEEEeCCcCCc
Confidence            96543              33322110   0136899999999754  47777788999999999999976543

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=99.83  E-value=4.5e-20  Score=141.58  Aligned_cols=162  Identities=17%  Similarity=0.106  Sum_probs=126.4

Q ss_pred             CCCHHHHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCch------------------
Q 029836            2 MTSPDEAQFFSMLLKL----INAKNTMEIGVFTGYSLLATALAIP----DDGKILALDITKE------------------   55 (187)
Q Consensus         2 ~~~~~~~~~l~~l~~~----~~~~~vLeiG~g~G~~~~~l~~~~~----~~~~v~~vd~~~~------------------   55 (187)
                      +++++...+|+.++..    ..|.+|||+|++.|+++++++..++    ++.+++++|..+.                  
T Consensus        85 mv~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~  164 (282)
T 2wk1_A           85 MIGIKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALH  164 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGG
T ss_pred             ccCHHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccc
Confidence            3567778888888765    4588999999999999999987663    2678999996421                  


Q ss_pred             --------HHHHHHHHHHHcCCC-CceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC-cccHHHHHHHHhcccCCeE
Q 029836           56 --------HYEKGLPIIQKAGVA-HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK-DNYVNYHKRLIELVKVGGV  125 (187)
Q Consensus        56 --------~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~-~~~~~~~~~~~~~L~~gG~  125 (187)
                              .++.+++++++.|+. ++++++.|++.+.++.+.     .++||+|++|+++ +.+..+++.+.++|+|||+
T Consensus       165 ~~~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~-----~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGi  239 (282)
T 2wk1_A          165 RRNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAP-----IDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGY  239 (282)
T ss_dssp             GGHHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCC-----CCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCC-----CCCEEEEEEcCCccccHHHHHHHHHhhcCCCEE
Confidence                    467799999999984 899999999999888752     4689999999986 4578899999999999999


Q ss_pred             EEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHHHhcCCCeeEEEeecCCeeEEEEEcC
Q 029836          126 IGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVTLCRRIG  187 (187)
Q Consensus       126 lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~G~~i~~k~~  187 (187)
                      |++||+.|.               .....++++|++.    .++...+.+++.+..+-+|.+
T Consensus       240 Iv~DD~~~~---------------~G~~~Av~Ef~~~----~~i~~~i~~~~~~~v~~rk~~  282 (282)
T 2wk1_A          240 VIVDDYMMC---------------PPCKDAVDEYRAK----FDIADELITIDRDGVYWQRTR  282 (282)
T ss_dssp             EEESSCTTC---------------HHHHHHHHHHHHH----TTCCSCCEECSSSCEEEECCC
T ss_pred             EEEcCCCCC---------------HHHHHHHHHHHHh----cCCceEEEEecCEEEEEEeCC
Confidence            999998541               1334455555433    345667788888777777653

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.80  E-value=5.6e-19  Score=137.54  Aligned_cols=149  Identities=17%  Similarity=0.256  Sum_probs=115.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHH--cCC-CCceEEEeCCchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK--AGV-AHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ..++++|||||||+|..+.++++..+ ..+++++|+++.+++.|++++..  .++ .++++++.+|+.++++..      
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~------  165 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------  165 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC------
Confidence            35788999999999999999998644 68999999999999999999876  333 478999999998877643      


Q ss_pred             CCceeEEEEcCCCc-------ccHHHHHHHHhcccCCeEEEEeCc-CCCccccCCCCCCchhhhhhHHHHHHHHHHHHhc
Q 029836           94 HGTFDFVFVDADKD-------NYVNYHKRLIELVKVGGVIGYDNT-LWGGSVVAPPDADLDEHFLYLRDFVQELNKALAV  165 (187)
Q Consensus        94 ~~~~D~v~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (187)
                      .++||+|++|....       ....+++.+.++|+|||++++++. .|..              ......+.++++.+..
T Consensus       166 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~--------------~~~~~~~~~~l~~~f~  231 (304)
T 2o07_A          166 QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLH--------------LDLIKEMRQFCQSLFP  231 (304)
T ss_dssp             SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTC--------------HHHHHHHHHHHHHHCS
T ss_pred             CCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccc--------------hHHHHHHHHHHHHhCC
Confidence            57899999997621       235789999999999999998762 2321              2344567777788887


Q ss_pred             CCCeeEEEeec---C-CeeEEEEEc
Q 029836          166 DPRIEICQISI---A-DGVTLCRRI  186 (187)
Q Consensus       166 ~~~~~~~~~p~---~-~G~~i~~k~  186 (187)
                      +..+....+|+   | .|+.++.|.
T Consensus       232 ~v~~~~~~vP~~~~g~~g~~~as~~  256 (304)
T 2o07_A          232 VVAYAYCTIPTYPSGQIGFMLCSKN  256 (304)
T ss_dssp             EEEEEEEECTTSGGGEEEEEEEESS
T ss_pred             CceeEEEEeccccCcceEEEEEeCC
Confidence            77777777775   3 578888753

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.79  E-value=9.8e-19  Score=136.67  Aligned_cols=150  Identities=17%  Similarity=0.211  Sum_probs=113.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc--CC-CCceEEEeCCchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA--GV-AHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ..++++|||||||+|.++.++++..+ ..+++++|+++.+++.|+++++..  ++ .++++++.+|+.++++..      
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------  178 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------  178 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc------
Confidence            45788999999999999999998644 689999999999999999998754  33 478999999998877652      


Q ss_pred             CCceeEEEEcCCC-----cc-c-HHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHHHhcC
Q 029836           94 HGTFDFVFVDADK-----DN-Y-VNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVD  166 (187)
Q Consensus        94 ~~~~D~v~~d~~~-----~~-~-~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (187)
                      .++||+|++|...     .. + ..+++.+.++|+|||++++++...       ..      .......+.++.+.+..+
T Consensus       179 ~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~-------~~------~~~~~~~~~~~l~~vF~~  245 (314)
T 2b2c_A          179 KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV-------WL------HLPLIAHLVAFNRKIFPA  245 (314)
T ss_dssp             TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCT-------TT------CHHHHHHHHHHHHHHCSE
T ss_pred             CCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCc-------cc------CHHHHHHHHHHHHHHCCc
Confidence            5789999998741     11 2 688999999999999999875211       00      023345566777777777


Q ss_pred             CCeeEEEeec---CC-eeEEEEEc
Q 029836          167 PRIEICQISI---AD-GVTLCRRI  186 (187)
Q Consensus       167 ~~~~~~~~p~---~~-G~~i~~k~  186 (187)
                      ..+....+|+   |+ |+.++.|.
T Consensus       246 v~~~~~~iP~~~~g~~g~~~ask~  269 (314)
T 2b2c_A          246 VTYAQSIVSTYPSGSMGYLICAKN  269 (314)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEESS
T ss_pred             ceEEEEEecCcCCCceEEEEEeCC
Confidence            7777777775   45 78888764

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.78  E-value=1.1e-18  Score=131.29  Aligned_cols=116  Identities=19%  Similarity=0.307  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh---CCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALA---IPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~---~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      ++...++..++...++.+|||||||+|+++..+++.   +.++++|+++|+++++++.|+      +..++++++++|+.
T Consensus        67 p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~  140 (236)
T 2bm8_A           67 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCS  140 (236)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcch
Confidence            888889999888888999999999999999999987   344789999999999998876      12368999999997


Q ss_pred             HH--HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHh-cccCCeEEEEeCc
Q 029836           82 PL--LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIE-LVKVGGVIGYDNT  131 (187)
Q Consensus        82 ~~--l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~-~L~~gG~lv~~~~  131 (187)
                      +.  ++...     ..+||+|+++..+..+..++..+.+ +|+|||+++++++
T Consensus       141 ~~~~l~~~~-----~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          141 DLTTFEHLR-----EMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             CSGGGGGGS-----SSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             hHHHHHhhc-----cCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            64  33331     2379999999887788889999996 9999999999876

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.76  E-value=1.3e-17  Score=122.35  Aligned_cols=119  Identities=18%  Similarity=0.134  Sum_probs=100.0

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      ..+....+-..+...++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++..+. ++++++++|+.+.
T Consensus        25 ~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~  102 (204)
T 3e05_A           25 KQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEG  102 (204)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTT
T ss_pred             hHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhh
Confidence            344545554555566778999999999999999999865 68999999999999999999999888 7899999999765


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ++.       .++||+|+++........+++.+.+.|+|||.+++...
T Consensus       103 ~~~-------~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A          103 LDD-------LPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             CTT-------SCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             hhc-------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEec
Confidence            442       36799999998766888999999999999999998654

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.76  E-value=5.9e-17  Score=117.60  Aligned_cols=107  Identities=12%  Similarity=0.099  Sum_probs=90.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+++++..++ ++++++++|+.+..+...     .++|
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~-----~~~f  114 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-G-AASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGT-----TSPV  114 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCC-----SSCC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-C-CCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhcc-----CCCc
Confidence            57789999999999999988764 2 57899999999999999999999988 789999999988766542     4689


Q ss_pred             eEEEEcCCC----cccHHHHHHHHh--cccCCeEEEEeCcC
Q 029836           98 DFVFVDADK----DNYVNYHKRLIE--LVKVGGVIGYDNTL  132 (187)
Q Consensus        98 D~v~~d~~~----~~~~~~~~~~~~--~L~~gG~lv~~~~~  132 (187)
                      |+|+++.+.    ......++.+.+  +|+|||++++....
T Consensus       115 D~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          115 DLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             cEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            999999763    336778888888  99999999986543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.76  E-value=7.1e-18  Score=129.88  Aligned_cols=107  Identities=16%  Similarity=0.107  Sum_probs=91.4

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccC
Q 029836           14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ++...++++|||||||+|..+..++...+ +++|+++|+++++++.|++++++.++ ++++++++|+.++ +        
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~--------  185 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D--------  185 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G--------
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C--------
Confidence            45667889999999999876544433444 68999999999999999999999998 8999999999764 2        


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .++||+|++.....+...+++.+.+.|||||.+++.+.
T Consensus       186 d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          186 GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            36899999988777888999999999999999999774

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.76  E-value=1.5e-17  Score=130.14  Aligned_cols=151  Identities=16%  Similarity=0.119  Sum_probs=108.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc--C-C-CCceEEEeCCchHHHHHHhhcc
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA--G-V-AHKIDFREGPALPLLDQLIQDE   91 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~--~-~-~~~i~~~~~d~~~~l~~~~~~~   91 (187)
                      ...++++|||||||+|..+.++++..+ ..+++++|+++.+++.|++++...  + . .++++++.+|+.++++..    
T Consensus        74 ~~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~----  148 (314)
T 1uir_A           74 THPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT----  148 (314)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC----
T ss_pred             cCCCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc----
Confidence            345788999999999999999998644 689999999999999999998752  2 2 368999999998877653    


Q ss_pred             cCCCceeEEEEcCCCcc----------cHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHH
Q 029836           92 KYHGTFDFVFVDADKDN----------YVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNK  161 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~~----------~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (187)
                        .++||+|++|.....          ..++++.+.+.|+|||++++....    .. +..       ......+.+..+
T Consensus       149 --~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~----~~-~~~-------~~~~~~~~~~l~  214 (314)
T 1uir_A          149 --EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM----IL-LTH-------HRVHPVVHRTVR  214 (314)
T ss_dssp             --CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE----EC-C----------CHHHHHHHHHH
T ss_pred             --CCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC----cc-ccC-------HHHHHHHHHHHH
Confidence              578999999976322          478999999999999999985211    00 000       122233444444


Q ss_pred             HHhcCCCeeEEEeecCCe---eEEEEE
Q 029836          162 ALAVDPRIEICQISIADG---VTLCRR  185 (187)
Q Consensus       162 ~~~~~~~~~~~~~p~~~G---~~i~~k  185 (187)
                      .+..+..+....+|+.+|   +.++.|
T Consensus       215 ~~F~~v~~~~~~vP~~~g~~~~~~as~  241 (314)
T 1uir_A          215 EAFRYVRSYKNHIPGFFLNFGFLLASD  241 (314)
T ss_dssp             TTCSEEEEEEEEEGGGTEEEEEEEEES
T ss_pred             HHCCceEEEEEecCCCCCeEEEEEEEC
Confidence            444444455666787555   566655

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.75  E-value=1.1e-17  Score=123.97  Aligned_cols=168  Identities=14%  Similarity=0.118  Sum_probs=116.0

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC----ceEEEeCC
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH----KIDFREGP   79 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~----~i~~~~~d   79 (187)
                      .+...+++..++...++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++..++..    +++++++|
T Consensus        14 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (217)
T 3jwh_A           14 NQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA   92 (217)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCC
Confidence            345566666677777889999999999999999998754 5799999999999999999998877753    89999999


Q ss_pred             chHHHHHHhhcccCCCceeEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCcCCCcccc--CCCCC--Cchhhhh
Q 029836           80 ALPLLDQLIQDEKYHGTFDFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTLWGGSVV--APPDA--DLDEHFL  150 (187)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~--~~~~~--~~~~~~~  150 (187)
                      .... +..      .++||+|++....     .....+++.+.+.|+|||++++......+...  .+...  .......
T Consensus        93 ~~~~-~~~------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (217)
T 3jwh_A           93 LTYQ-DKR------FHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFE  165 (217)
T ss_dssp             TTSC-CGG------GCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSC
T ss_pred             cccc-ccc------CCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccc
Confidence            7432 211      4689999987652     23468899999999999988875442111100  00000  0000001


Q ss_pred             hHHHHHHHHHHHHhcCCCeeEEEeecCCe
Q 029836          151 YLRDFVQELNKALAVDPRIEICQISIADG  179 (187)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~G  179 (187)
                      .....++++.+.+....+|...+.++|+.
T Consensus       166 ~~~~~l~~~~~~~~~~~Gf~v~~~~~g~~  194 (217)
T 3jwh_A          166 WTRSQFQNWANKITERFAYNVQFQPIGEA  194 (217)
T ss_dssp             BCHHHHHHHHHHHHHHSSEEEEECCCSCC
T ss_pred             cCHHHHHHHHHHHHHHcCceEEEEecCCc
Confidence            13345566666777777898888866543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.75  E-value=2e-17  Score=122.54  Aligned_cols=168  Identities=16%  Similarity=0.111  Sum_probs=114.3

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC----ceEEEeCC
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH----KIDFREGP   79 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~----~i~~~~~d   79 (187)
                      .+...+++..++...++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...++..    +++++++|
T Consensus        14 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (219)
T 3jwg_A           14 NQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS   92 (219)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECC
T ss_pred             hHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCc
Confidence            345556666666677889999999999999999998754 5799999999999999999998777653    89999999


Q ss_pred             chHHHHHHhhcccCCCceeEEEEcCCC---c--ccHHHHHHHHhcccCCeEEEEeCcCCCcccc--CCCCC--Cchhhhh
Q 029836           80 ALPLLDQLIQDEKYHGTFDFVFVDADK---D--NYVNYHKRLIELVKVGGVIGYDNTLWGGSVV--APPDA--DLDEHFL  150 (187)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~D~v~~d~~~---~--~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~--~~~~~--~~~~~~~  150 (187)
                      .... +..      .++||+|++....   .  ....+++.+.+.|+|||+++.......+...  .+...  .......
T Consensus        93 ~~~~-~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (219)
T 3jwg_A           93 LVYR-DKR------FSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFE  165 (219)
T ss_dssp             SSSC-CGG------GTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTS
T ss_pred             cccc-ccc------cCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceee
Confidence            8432 211      4689999987652   1  2357899999999999988765433221111  00000  0000001


Q ss_pred             hHHHHHHHHHHHHhcCCCeeEEEeecCCe
Q 029836          151 YLRDFVQELNKALAVDPRIEICQISIADG  179 (187)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~G  179 (187)
                      .....++++.+.+....+|...+.+++++
T Consensus       166 ~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~  194 (219)
T 3jwg_A          166 WTRKEFQTWAVKVAEKYGYSVRFLQIGEI  194 (219)
T ss_dssp             BCHHHHHHHHHHHHHHHTEEEEEEEESCC
T ss_pred             ecHHHHHHHHHHHHHHCCcEEEEEecCCc
Confidence            12345555556666666888877765543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.75  E-value=1.2e-17  Score=119.67  Aligned_cols=117  Identities=16%  Similarity=0.160  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      ....+-..+...++.+|||+|||+|..+..+++.++ ..+++++|+++.+++.++++++..+...++ ++++|..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~   90 (178)
T 3hm2_A           13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD   90 (178)
T ss_dssp             HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG
T ss_pred             HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc
Confidence            333344444455667999999999999999998875 689999999999999999999999886688 888988765553


Q ss_pred             HhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           87 LIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .      .++||+|++...... ..+++.+.+.|+|||.+++....
T Consensus        91 ~------~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           91 V------PDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             C------CSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             c------CCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEeec
Confidence            2      378999998875433 77899999999999999986543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.75  E-value=5.2e-17  Score=119.53  Aligned_cols=116  Identities=17%  Similarity=0.155  Sum_probs=96.1

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .++....+-..+...++.+|||+|||+|..+..+++.   +.+|+++|+++++++.|+++++..++..+++++++|+.+.
T Consensus        40 ~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~  116 (204)
T 3njr_A           40 KSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA  116 (204)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh
Confidence            4455555555556667789999999999999999986   5799999999999999999999999866899999999875


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ++.       .++||+|+++... ... +++.+.+.|+|||.+++...
T Consensus       117 ~~~-------~~~~D~v~~~~~~-~~~-~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          117 LAD-------LPLPEAVFIGGGG-SQA-LYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             GTT-------SCCCSEEEECSCC-CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred             ccc-------CCCCCEEEECCcc-cHH-HHHHHHHhcCCCcEEEEEec
Confidence            543       3579999998743 344 89999999999999998654

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.74  E-value=3.2e-17  Score=129.09  Aligned_cols=112  Identities=21%  Similarity=0.319  Sum_probs=91.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc--CC-CCceEEEeCCchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA--GV-AHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ..++++|||||||+|.++.++++..+ ..+|+++|+++.+++.|++++...  ++ .++++++++|+.++++...     
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~-----  191 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAA-----  191 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSC-----
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhcc-----
Confidence            35688999999999999999998644 689999999999999999998753  33 3689999999988776431     


Q ss_pred             CCceeEEEEcCCC-----cc--cHHHHHHHHhcccCCeEEEEe-CcCCC
Q 029836           94 HGTFDFVFVDADK-----DN--YVNYHKRLIELVKVGGVIGYD-NTLWG  134 (187)
Q Consensus        94 ~~~~D~v~~d~~~-----~~--~~~~~~~~~~~L~~gG~lv~~-~~~~~  134 (187)
                      .++||+|++|...     ..  ...+++.+.++|+|||+++++ +..|.
T Consensus       192 ~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~  240 (334)
T 1xj5_A          192 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWL  240 (334)
T ss_dssp             TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTT
T ss_pred             CCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccc
Confidence            3689999998651     11  478999999999999999986 55554

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.74  E-value=4.3e-17  Score=125.65  Aligned_cols=148  Identities=11%  Similarity=0.051  Sum_probs=107.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc--CC--------CCceEEEeCCchHHHH
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA--GV--------AHKIDFREGPALPLLD   85 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~--~~--------~~~i~~~~~d~~~~l~   85 (187)
                      ...++++|||||||+|..+.++++. + ..+++++|+++.+++.|++++ ..  ++        .++++++.+|+.++++
T Consensus        72 ~~~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~  148 (281)
T 1mjf_A           72 AHPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIK  148 (281)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred             hCCCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhc
Confidence            3457889999999999999999987 5 689999999999999999998 44  32        4689999999988765


Q ss_pred             HHhhcccCCCceeEEEEcCCC-----cc--cHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHH
Q 029836           86 QLIQDEKYHGTFDFVFVDADK-----DN--YVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQE  158 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~~-----~~--~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (187)
                      .       .++||+|++|...     ..  ..++++.+.+.|+|||+++++...       +..      .......+.+
T Consensus       149 ~-------~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~-------~~~------~~~~~~~~~~  208 (281)
T 1mjf_A          149 N-------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS-------VYL------FTDELISAYK  208 (281)
T ss_dssp             H-------CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE-------TTT------SHHHHHHHHH
T ss_pred             c-------cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC-------ccc------CHHHHHHHHH
Confidence            4       3589999999752     12  478899999999999999986311       000      0223334445


Q ss_pred             HHHHHhcCCCeeEEEeecCCe---eEEEEEc
Q 029836          159 LNKALAVDPRIEICQISIADG---VTLCRRI  186 (187)
Q Consensus       159 ~~~~~~~~~~~~~~~~p~~~G---~~i~~k~  186 (187)
                      ..+.+..+..+....+|..+|   +.++.|.
T Consensus       209 ~l~~~f~~v~~~~~~vP~~~g~~~~~~as~~  239 (281)
T 1mjf_A          209 EMKKVFDRVYYYSFPVIGYASPWAFLVGVKG  239 (281)
T ss_dssp             HHHHHCSEEEEEEECCTTSSSSEEEEEEEES
T ss_pred             HHHHHCCceEEEEEecCCCCceEEEEEeeCC
Confidence            555555554455556676544   7777764

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.74  E-value=2.8e-17  Score=125.40  Aligned_cols=116  Identities=16%  Similarity=0.224  Sum_probs=93.2

Q ss_pred             HHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            9 QFFSMLLK--LINAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         9 ~~l~~l~~--~~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      +++..++.  ..++.+|||+|||+|..+..+++.++ ++.+|+++|+++.+++.|+++++..+...+++++++|+.++ +
T Consensus        58 ~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~-~  136 (261)
T 4gek_A           58 SMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A  136 (261)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC-C
T ss_pred             HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc-c
Confidence            34444444  23567999999999999999998764 35799999999999999999999988888999999998754 2


Q ss_pred             HHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           86 QLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                              .++||+|++...     ..+...+++++.+.|||||++++.+...
T Consensus       137 --------~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          137 --------IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             --------CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             --------ccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence                    357999988654     1234568999999999999999876543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.74  E-value=4.3e-17  Score=125.27  Aligned_cols=107  Identities=12%  Similarity=0.149  Sum_probs=89.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc--CC-CCceEEEeCCchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA--GV-AHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ..++++|||||||+|..+.++++..+ ..++++||+++.+++.|++++...  ++ .++++++.+|+.++++..      
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~------  145 (275)
T 1iy9_A           73 HPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------  145 (275)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------
T ss_pred             CCCCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------
Confidence            35688999999999999999987643 589999999999999999998652  33 368999999999877643      


Q ss_pred             CCceeEEEEcCCCcc-------cHHHHHHHHhcccCCeEEEEeC
Q 029836           94 HGTFDFVFVDADKDN-------YVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .++||+|++|.....       ..++++.+.+.|+|||++++..
T Consensus       146 ~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            578999999975211       2689999999999999999863

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.74  E-value=3.7e-17  Score=117.32  Aligned_cols=107  Identities=14%  Similarity=0.142  Sum_probs=89.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..+++. + ..+++++|+++.+++.++++++..++.++++++++|+.+.++..      .++
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~  100 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL------TGR  100 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB------CSC
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh------cCC
Confidence            346789999999999999999876 3 57999999999999999999999888778999999998876654      567


Q ss_pred             eeEEEEcCCC--cccHHHHHHHH--hcccCCeEEEEeCc
Q 029836           97 FDFVFVDADK--DNYVNYHKRLI--ELVKVGGVIGYDNT  131 (187)
Q Consensus        97 ~D~v~~d~~~--~~~~~~~~~~~--~~L~~gG~lv~~~~  131 (187)
                      ||+|+++.+.  ......++.+.  +.|+|||++++...
T Consensus       101 fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~  139 (177)
T 2esr_A          101 FDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETD  139 (177)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             CCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence            9999998763  34556677776  89999999998644

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.73  E-value=1.8e-17  Score=124.69  Aligned_cols=109  Identities=17%  Similarity=0.173  Sum_probs=89.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|.++.++++..+  .++++||+++.+++.|+++.+..+  .+++++.+++.+....+.     +++|
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~-----~~~F  129 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLP-----DGHF  129 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSC-----TTCE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhccccc-----ccCC
Confidence            3567999999999999999987643  689999999999999999888765  478999999987765553     5789


Q ss_pred             eEEEEcCCC--------cccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           98 DFVFVDADK--------DNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        98 D~v~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      |.|+.|...        .+...+++++.++|||||++++.+....+
T Consensus       130 D~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~  175 (236)
T 3orh_A          130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG  175 (236)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHH
T ss_pred             ceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCch
Confidence            999998651        23467889999999999999987754433

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.72  E-value=2.1e-16  Score=118.96  Aligned_cols=105  Identities=14%  Similarity=0.156  Sum_probs=88.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..++...+ +.+|+++|+++.+++.++++++..++. +++++++|+.++....  .  ..++|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~--~--~~~~f  142 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRK--D--VRESY  142 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCT--T--TTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccc--c--ccCCc
Confidence            3678999999999999999997655 689999999999999999999998884 6999999997653100  0  03689


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++... .+...+++.+.++|+|||++++.
T Consensus       143 D~V~~~~~-~~~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          143 DIVTARAV-ARLSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             EEEEEECC-SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cEEEEecc-CCHHHHHHHHHHhcCCCCEEEEE
Confidence            99999874 56788999999999999999874

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.72  E-value=3e-16  Score=116.61  Aligned_cols=105  Identities=21%  Similarity=0.301  Sum_probs=87.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      +..+|||||||+|.++..+++..+ +.+|+++|+++.+++.|+++++..++ .+++++++|+.+.++...+    .++||
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~l-~nv~~~~~Da~~~l~~~~~----~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEGL-SNLRVMCHDAVEVLHKMIP----DNSLR  107 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTTC-SSEEEECSCHHHHHHHHSC----TTCEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHcC----CCChh
Confidence            467999999999999999999876 68999999999999999999999887 5799999999987765321    57899


Q ss_pred             EEEEc---CCCc--c------cHHHHHHHHhcccCCeEEEEe
Q 029836           99 FVFVD---ADKD--N------YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        99 ~v~~d---~~~~--~------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .|++.   ++..  .      ...+++.+.+.|||||++++.
T Consensus       108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~  149 (218)
T 3dxy_A          108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA  149 (218)
T ss_dssp             EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence            99985   2211  1      136999999999999999873

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.72  E-value=8.6e-17  Score=121.69  Aligned_cols=118  Identities=14%  Similarity=0.212  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      .....+...+...++.+|||+|||+|..+..+++..  +.+++++|+++.+++.++++++..++.+++++.++|+.+...
T Consensus        23 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~  100 (256)
T 1nkv_A           23 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA  100 (256)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc
Confidence            333334344445567899999999999999999876  468999999999999999999999987799999999976422


Q ss_pred             HHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           86 QLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                              .++||+|++...   ..+...+++.+.++|||||.+++.+..+
T Consensus       101 --------~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~  143 (256)
T 1nkv_A          101 --------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYW  143 (256)
T ss_dssp             --------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred             --------CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcc
Confidence                    368999998654   3457889999999999999999976554

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.72  E-value=1.1e-16  Score=117.49  Aligned_cols=108  Identities=16%  Similarity=0.102  Sum_probs=88.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .++.+|||+|||+|..+..++...  ..+|+++|+++.+++.|+++++..++. ++++++++|+.+.++...     .++
T Consensus        52 ~~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~~  124 (201)
T 2ift_A           52 IHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ-----NQP  124 (201)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC-----SSC
T ss_pred             cCCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhc-----cCC
Confidence            477899999999999999877652  369999999999999999999998875 689999999987654321     357


Q ss_pred             -eeEEEEcCC--CcccHHHHHHH--HhcccCCeEEEEeCcC
Q 029836           97 -FDFVFVDAD--KDNYVNYHKRL--IELVKVGGVIGYDNTL  132 (187)
Q Consensus        97 -~D~v~~d~~--~~~~~~~~~~~--~~~L~~gG~lv~~~~~  132 (187)
                       ||+|+++.+  .......++.+  .++|+|||++++....
T Consensus       125 ~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          125 HFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             CEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             CCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence             999999987  34456777777  5679999999886543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.71  E-value=5.6e-16  Score=111.83  Aligned_cols=112  Identities=11%  Similarity=0.112  Sum_probs=87.5

Q ss_pred             HHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            9 QFFSMLLKL--INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         9 ~~l~~l~~~--~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      ++...++..  .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++++..++ +++++++++..+.. .
T Consensus        10 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~-~   84 (185)
T 3mti_A           10 HMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLD-H   84 (185)
T ss_dssp             HHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGG-G
T ss_pred             HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHH-h
Confidence            344444432  35689999999999999999976   58999999999999999999999888 78999997775432 2


Q ss_pred             HhhcccCCCceeEEEEcC-C-----------CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           87 LIQDEKYHGTFDFVFVDA-D-----------KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~-~-----------~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..     .++||+|+++. .           .......++.+.+.|||||.+++..
T Consensus        85 ~~-----~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  135 (185)
T 3mti_A           85 YV-----REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI  135 (185)
T ss_dssp             TC-----CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hc-----cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence            21     56899999873 2           1233467889999999999998753

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.71  E-value=1.6e-16  Score=123.32  Aligned_cols=106  Identities=14%  Similarity=0.178  Sum_probs=87.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHH--cCC-CCceEEEeCCchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK--AGV-AHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ..++++|||||||+|..+..+++..+ ..+++++|+++.+++.+++++..  .++ .++++++++|+.++++..      
T Consensus        88 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  160 (296)
T 1inl_A           88 HPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------  160 (296)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------
Confidence            35678999999999999999998654 68999999999999999999865  233 368999999998776543      


Q ss_pred             CCceeEEEEcCCCc--------ccHHHHHHHHhcccCCeEEEEe
Q 029836           94 HGTFDFVFVDADKD--------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        94 ~~~~D~v~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++||+|++|....        ....+++.+.+.|+|||++++.
T Consensus       161 ~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  204 (296)
T 1inl_A          161 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  204 (296)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            56899999987522        3378999999999999999985

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.71  E-value=3.2e-16  Score=113.04  Aligned_cols=109  Identities=16%  Similarity=0.167  Sum_probs=89.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+++++..++.++++++++|+.+.++.+...   .++|
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~f  117 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE---KLQF  117 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT---TCCE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhc---CCCC
Confidence            46789999999999999998874 3 47999999999999999999999888778999999998876544221   4689


Q ss_pred             eEEEEcCC--CcccHHHHHHH--HhcccCCeEEEEeCc
Q 029836           98 DFVFVDAD--KDNYVNYHKRL--IELVKVGGVIGYDNT  131 (187)
Q Consensus        98 D~v~~d~~--~~~~~~~~~~~--~~~L~~gG~lv~~~~  131 (187)
                      |+|+++.+  .......+..+  .++|+|||++++...
T Consensus       118 D~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~  155 (187)
T 2fhp_A          118 DLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETD  155 (187)
T ss_dssp             EEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             CEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence            99999976  34456677777  788999999998643

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.71  E-value=4.8e-16  Score=112.18  Aligned_cols=118  Identities=18%  Similarity=0.180  Sum_probs=98.9

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      ......++...+...++.+|||+|||+|..+..+++..   .+++++|+++.+++.+++++...+..+++++.++|..+.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   94 (192)
T 1l3i_A           18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA   94 (192)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh
Confidence            34555555555666678899999999999999998764   799999999999999999999988877899999998764


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ++.       .++||+|+++........+++.+.++|+|||.+++...
T Consensus        95 ~~~-------~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A           95 LCK-------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             HTT-------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccc-------CCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            432       25899999988766788999999999999999998643

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.70  E-value=1.6e-16  Score=123.61  Aligned_cols=107  Identities=12%  Similarity=0.073  Sum_probs=88.5

Q ss_pred             hcCCC--EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAK--NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~--~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ...++  +|||||||.|..+.++++.++ +.++++||+++.+++.|++++.... .++++++++|+.+++....     .
T Consensus        85 ~p~p~~~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~-----~  157 (317)
T 3gjy_A           85 HQDASKLRITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFT-----P  157 (317)
T ss_dssp             HSCGGGCEEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCC-----T
T ss_pred             CCCCCCCEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhcc-----C
Confidence            34455  999999999999999999776 5799999999999999999886432 3689999999998876541     4


Q ss_pred             CceeEEEEcCCCc-------ccHHHHHHHHhcccCCeEEEEeC
Q 029836           95 GTFDFVFVDADKD-------NYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        95 ~~~D~v~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ++||+|++|....       ...++++.+.+.|+|||+++++.
T Consensus       158 ~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          158 ASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             TCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence            6899999986411       13789999999999999999764

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.70  E-value=6.5e-16  Score=113.34  Aligned_cols=147  Identities=14%  Similarity=0.181  Sum_probs=108.5

Q ss_pred             HHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            7 EAQFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         7 ~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      ...++..+... .++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|+++++..+..+ +++.++|..+.. 
T Consensus        47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-  122 (205)
T 3grz_A           47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL-G-AKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV-  122 (205)
T ss_dssp             HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC-
T ss_pred             HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC-
Confidence            34445555443 45689999999999999998874 3 5799999999999999999999988854 999999987542 


Q ss_pred             HHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHHHhc
Q 029836           86 QLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAV  165 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (187)
                              .++||+|+++........+++.+.++|+|||.+++.+....                    ....+.+.+. 
T Consensus       123 --------~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------------------~~~~~~~~~~-  173 (205)
T 3grz_A          123 --------DGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGIDYL--------------------QLPKIEQALA-  173 (205)
T ss_dssp             --------CSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEEEGG--------------------GHHHHHHHHH-
T ss_pred             --------CCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEecCcc--------------------cHHHHHHHHH-
Confidence                    46899999988766677888899999999999998654321                    1122333333 


Q ss_pred             CCCeeEEE-eecCCeeEEEEEc
Q 029836          166 DPRIEICQ-ISIADGVTLCRRI  186 (187)
Q Consensus       166 ~~~~~~~~-~p~~~G~~i~~k~  186 (187)
                      ..+|.... ...+.+..+..++
T Consensus       174 ~~Gf~~~~~~~~~~w~~~~~~~  195 (205)
T 3grz_A          174 ENSFQIDLKMRAGRWIGLAISR  195 (205)
T ss_dssp             HTTEEEEEEEEETTEEEEEEEE
T ss_pred             HcCCceEEeeccCCEEEEEEec
Confidence            33555443 4467777777765

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.70  E-value=1.8e-15  Score=114.88  Aligned_cols=147  Identities=18%  Similarity=0.170  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            6 DEAQFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         6 ~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      .+...+..+... .++.+|||+|||+|..+..+++. .  .+++++|+++.+++.++++++.++..  +++.++|..+.+
T Consensus       106 tt~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~-g--~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~  180 (254)
T 2nxc_A          106 TTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAAL  180 (254)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHG
T ss_pred             HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHh-C--CeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcC
Confidence            334445555443 45789999999999999998875 2  39999999999999999999998874  899999987653


Q ss_pred             HHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHHHh
Q 029836           85 DQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALA  164 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (187)
                      +        .++||+|+++........++..+.++|+|||++++.+....                    ....+.+.+.
T Consensus       181 ~--------~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~~~~--------------------~~~~v~~~l~  232 (254)
T 2nxc_A          181 P--------FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKD--------------------RAPLVREAMA  232 (254)
T ss_dssp             G--------GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGG--------------------GHHHHHHHHH
T ss_pred             c--------CCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEeeccC--------------------CHHHHHHHHH
Confidence            2        45899999987655667889999999999999998755421                    1123333343


Q ss_pred             cCCCeeE-EEeecCCeeEEEEEc
Q 029836          165 VDPRIEI-CQISIADGVTLCRRI  186 (187)
Q Consensus       165 ~~~~~~~-~~~p~~~G~~i~~k~  186 (187)
                      . .+|.. .....+++..+..|+
T Consensus       233 ~-~Gf~~~~~~~~~~W~~l~~~k  254 (254)
T 2nxc_A          233 G-AGFRPLEEAAEGEWVLLAYGR  254 (254)
T ss_dssp             H-TTCEEEEEEEETTEEEEEEEC
T ss_pred             H-CCCEEEEEeccCCeEEEEEEC
Confidence            3 34543 334567777777654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.70  E-value=9.2e-16  Score=108.99  Aligned_cols=105  Identities=13%  Similarity=0.101  Sum_probs=86.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..+++..   .+++++|+++.+++.++++++..+.  +++++++|+.+.++.....   .++||
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~---~~~~D  112 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQ---GERFT  112 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhcc---CCceE
Confidence            77899999999999999999863   3499999999999999999998877  8999999998876654321   24799


Q ss_pred             EEEEcCCC-cccHHHHHHHH--hcccCCeEEEEeCc
Q 029836           99 FVFVDADK-DNYVNYHKRLI--ELVKVGGVIGYDNT  131 (187)
Q Consensus        99 ~v~~d~~~-~~~~~~~~~~~--~~L~~gG~lv~~~~  131 (187)
                      +|+++... ......++.+.  ++|+|||++++...
T Consensus       113 ~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  148 (171)
T 1ws6_A          113 VAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             EEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeC
Confidence            99998653 45566777777  99999999987543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.70  E-value=3.5e-16  Score=114.86  Aligned_cols=105  Identities=11%  Similarity=0.074  Sum_probs=86.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..++...  ..+|+++|+++.+++.|+++++..++ ++++++++|+.+.++..      .++|
T Consensus        53 ~~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~------~~~f  123 (202)
T 2fpo_A           53 IVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQK------GTPH  123 (202)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSC------CCCE
T ss_pred             cCCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhc------CCCC
Confidence            377899999999999999877653  35999999999999999999999888 78999999998765432      4689


Q ss_pred             eEEEEcCC--CcccHHHHHHHHh--cccCCeEEEEeCc
Q 029836           98 DFVFVDAD--KDNYVNYHKRLIE--LVKVGGVIGYDNT  131 (187)
Q Consensus        98 D~v~~d~~--~~~~~~~~~~~~~--~L~~gG~lv~~~~  131 (187)
                      |+|+++++  .......++.+.+  +|+|||++++...
T Consensus       124 D~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          124 NIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESE  161 (202)
T ss_dssp             EEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             CEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence            99999976  3445667777755  5999999987643

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.70  E-value=1.4e-16  Score=121.15  Aligned_cols=114  Identities=14%  Similarity=0.136  Sum_probs=94.2

Q ss_pred             HHHHHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            8 AQFFSMLLKLI-NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         8 ~~~l~~l~~~~-~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      ..++..++... ++.+|||+|||+|..+..++...+  .+|+++|+++.+++.|+++++.+++.++++++++|+.+..+.
T Consensus        37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~  114 (259)
T 3lpm_A           37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL  114 (259)
T ss_dssp             HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh
Confidence            34566666555 788999999999999999998743  499999999999999999999999988899999999876543


Q ss_pred             HhhcccCCCceeEEEEcCCC-----------------------cccHHHHHHHHhcccCCeEEEE
Q 029836           87 LIQDEKYHGTFDFVFVDADK-----------------------DNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~~-----------------------~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +.     .++||+|+++++.                       .....+++.+.++|+|||.+++
T Consensus       115 ~~-----~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  174 (259)
T 3lpm_A          115 IP-----KERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF  174 (259)
T ss_dssp             SC-----TTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hc-----cCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence            31     4689999997651                       1235688999999999999997

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.69  E-value=1.7e-16  Score=115.71  Aligned_cols=108  Identities=10%  Similarity=0.183  Sum_probs=90.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..+++.+++.++++++|+++.+++.|+++++..++.++++++++|+.+.....      .++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~   93 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI------DCP   93 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC------CSC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc------cCC
Confidence            34567999999999999999998864467999999999999999999999988789999999987654322      578


Q ss_pred             eeEEEEcCCC------------cccHHHHHHHHhcccCCeEEEEeC
Q 029836           97 FDFVFVDADK------------DNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        97 ~D~v~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ||+|+++...            .....+++.+.++|+|||.+++..
T Consensus        94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            9999988631            123578999999999999999864

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.69  E-value=1.4e-16  Score=120.60  Aligned_cols=117  Identities=16%  Similarity=0.214  Sum_probs=97.2

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .+.....+...+...++.+|||+|||+|..+..+++.+.+..+++++|+++.+++.|+++++..++.+++++.++|+.+.
T Consensus        78 ~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  157 (255)
T 3mb5_A           78 HPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG  157 (255)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC
T ss_pred             cHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc
Confidence            34455555566666778899999999999999999885447899999999999999999999999877799999999865


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ++        .++||+|+++..  ....+++.+.+.|+|||.+++..
T Consensus       158 ~~--------~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          158 IE--------EENVDHVILDLP--QPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             CC--------CCSEEEEEECSS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cC--------CCCcCEEEECCC--CHHHHHHHHHHHcCCCCEEEEEE
Confidence            33        568999999764  34567889999999999999753

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.69  E-value=2e-16  Score=116.56  Aligned_cols=117  Identities=19%  Similarity=0.221  Sum_probs=94.7

Q ss_pred             HHHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            8 AQFFSMLLKLI--NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         8 ~~~l~~l~~~~--~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      ..+...++...  ++.+|||+|||+|..+..+++. + +.+++++|+++.+++.++++++..+..++++++++|..+.. 
T Consensus        30 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-  106 (219)
T 3dlc_A           30 PIIAENIINRFGITAGTCIDIGSGPGALSIALAKQ-S-DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP-  106 (219)
T ss_dssp             HHHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHH-S-EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS-
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC-
Confidence            34444444433  3349999999999999999987 3 68999999999999999999999998789999999987532 


Q ss_pred             HHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           86 QLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                       +     ..++||+|++...   ..+...+++.+.++|+|||.+++.+...
T Consensus       107 -~-----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  151 (219)
T 3dlc_A          107 -I-----EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFG  151 (219)
T ss_dssp             -S-----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             -C-----CcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence             1     1568999998765   3556889999999999999999876543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.69  E-value=1.1e-16  Score=121.19  Aligned_cols=109  Identities=20%  Similarity=0.241  Sum_probs=92.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..+++..+  .+++++|+++.+++.++++++..++.++++++++|+.+. + +     ..++
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~  114 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-P-F-----QNEE  114 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-S-S-----CTTC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-C-C-----CCCC
Confidence            34567999999999999999999865  499999999999999999999999988899999999653 2 1     0478


Q ss_pred             eeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           97 FDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        97 ~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      ||+|++...  .-+...+++.+.++|+|||++++.+..|.
T Consensus       115 fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  154 (257)
T 3f4k_A          115 LDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASWF  154 (257)
T ss_dssp             EEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred             EEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEeecc
Confidence            999998765  33578899999999999999999876543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.68  E-value=1.1e-16  Score=122.08  Aligned_cols=109  Identities=16%  Similarity=0.199  Sum_probs=92.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..+++. + ..+++++|+++.+++.++++++..++.++++++++|..+..  +     ..++
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-----~~~~  114 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH-V-TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP--F-----RNEE  114 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT-C-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--C-----CTTC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC--C-----CCCC
Confidence            345789999999999999999987 3 57999999999999999999999999888999999996532  1     1568


Q ss_pred             eeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           97 FDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        97 ~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      ||+|++...  .-+...+++.+.++|+|||++++.+..+.
T Consensus       115 fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  154 (267)
T 3kkz_A          115 LDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSWF  154 (267)
T ss_dssp             EEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEES
T ss_pred             EEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEeeec
Confidence            999998765  23568899999999999999999876543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.68  E-value=7.2e-16  Score=118.32  Aligned_cols=121  Identities=18%  Similarity=0.177  Sum_probs=97.3

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      .++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.++++++..++. +++++++|+.+......
T Consensus        73 ~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~  151 (274)
T 3ajd_A           73 MIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLL  151 (274)
T ss_dssp             GHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHH
T ss_pred             HHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhh
Confidence            44555556667789999999999999999988764589999999999999999999999884 89999999987654321


Q ss_pred             hcccCCCceeEEEEcCCC---------------------cccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           89 QDEKYHGTFDFVFVDADK---------------------DNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~~---------------------~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ..   .++||+|++|++.                     .....+++.+.++|||||.+++..+..
T Consensus       152 ~~---~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          152 KN---EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             HT---TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hc---cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            11   4589999999542                     234678999999999999999876543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.68  E-value=6.6e-16  Score=118.54  Aligned_cols=116  Identities=18%  Similarity=0.214  Sum_probs=96.7

Q ss_pred             CHHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            4 SPDEAQFFSMLLKL--INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         4 ~~~~~~~l~~l~~~--~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      .+++..++..++..  .++.+|||+|||+|..+..++...+ ..+++++|+++.+++.++++++..+.. +++++++|..
T Consensus        92 r~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~  169 (276)
T 2b3t_A           92 RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWF  169 (276)
T ss_dssp             CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTT
T ss_pred             CchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchh
Confidence            45677777777765  3567999999999999999998876 689999999999999999999998874 8999999997


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCCC----------------------------cccHHHHHHHHhcccCCeEEEEe
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDADK----------------------------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.++        .++||+|+++++.                            ..+..+++.+.+.|+|||++++.
T Consensus       170 ~~~~--------~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~  237 (276)
T 2b3t_A          170 SALA--------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  237 (276)
T ss_dssp             GGGT--------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhcc--------cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            6543        4689999998541                            23467788899999999999985

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.68  E-value=5e-16  Score=121.75  Aligned_cols=106  Identities=16%  Similarity=0.212  Sum_probs=88.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc--CC-CCceEEEeCCchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA--GV-AHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ..++++|||||||+|..+..+++..+ ..+++++|+++.+++.|+++++..  +. .++++++++|+.++++..      
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  186 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------  186 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc------
Confidence            45788999999999999999997644 689999999999999999998752  23 368999999998877643      


Q ss_pred             CCceeEEEEcCCC-----cc-c-HHHHHHHHhcccCCeEEEEe
Q 029836           94 HGTFDFVFVDADK-----DN-Y-VNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        94 ~~~~D~v~~d~~~-----~~-~-~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++||+|++|...     .. + .++++.+.+.|+|||++++.
T Consensus       187 ~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  229 (321)
T 2pt6_A          187 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  229 (321)
T ss_dssp             CSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            5689999998741     11 1 78999999999999999985

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.68  E-value=5.6e-16  Score=119.50  Aligned_cols=107  Identities=15%  Similarity=0.169  Sum_probs=88.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC--C-CCceEEEeCCchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG--V-AHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ..++++|||||||.|..+.++++..+ ..+++++|+++.+++.+++++...+  . .++++++++|+.++++..      
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  148 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------  148 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC------
Confidence            35678999999999999999997643 6899999999999999999887542  1 368999999998877654      


Q ss_pred             CCceeEEEEcCCC-----ccc--HHHHHHHHhcccCCeEEEEeC
Q 029836           94 HGTFDFVFVDADK-----DNY--VNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        94 ~~~~D~v~~d~~~-----~~~--~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .++||+|++|...     ...  ..+++.+.+.|+|||++++..
T Consensus       149 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          149 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            5689999998641     111  689999999999999999863

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.68  E-value=8.6e-16  Score=125.38  Aligned_cols=120  Identities=18%  Similarity=0.253  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      ....++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.++++++..|+.  ++++++|+.++..
T Consensus        88 ~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~  165 (464)
T 3m6w_A           88 PSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAE  165 (464)
T ss_dssp             TTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHH
T ss_pred             HHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhh
Confidence            33455666666677889999999999999999998875689999999999999999999999984  9999999987654


Q ss_pred             HHhhcccCCCceeEEEEcCCC---------cc----------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           86 QLIQDEKYHGTFDFVFVDADK---------DN----------------YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~~---------~~----------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ..      .++||+|++|++.         .+                ...+++.+.++|||||.|++..+.+
T Consensus       166 ~~------~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          166 AF------GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             HH------CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             hc------cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            33      5789999998762         11                1668888999999999999876654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.67  E-value=1.1e-15  Score=118.52  Aligned_cols=116  Identities=10%  Similarity=0.133  Sum_probs=95.7

Q ss_pred             HHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            7 EAQFFSMLLKL---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         7 ~~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +.+.+..++..   .++.+|||||||+|..+..+++..+  .+|+++|+++.+++.++++++..++..++++.++|..++
T Consensus        57 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (302)
T 3hem_A           57 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF  134 (302)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred             HHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc
Confidence            34455555543   3567999999999999999998764  789999999999999999999999988999999999754


Q ss_pred             HHHHhhcccCCCceeEEEEcCCC------------cccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADK------------DNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                                .++||+|++...-            +.+..+++.+.++|||||.+++.+....
T Consensus       135 ----------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          135 ----------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             ----------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             ----------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence                      3689999987542            3347899999999999999999876543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.67  E-value=4.3e-16  Score=118.03  Aligned_cols=103  Identities=16%  Similarity=0.161  Sum_probs=87.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||||||+|..++.++...+ +.+|+++|+++.+++.++++++..++. +++++++|+.++.....    ..++||
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~----~~~~fD  153 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRP-ELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAG----HREAYA  153 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTT----TTTCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccc----cCCCce
Confidence            467999999999999999998876 789999999999999999999999984 69999999976543100    036899


Q ss_pred             EEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           99 FVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +|++... .....+++.+.++|+|||.+++
T Consensus       154 ~I~s~a~-~~~~~ll~~~~~~LkpgG~l~~  182 (249)
T 3g89_A          154 RAVARAV-APLCVLSELLLPFLEVGGAAVA  182 (249)
T ss_dssp             EEEEESS-CCHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEECCc-CCHHHHHHHHHHHcCCCeEEEE
Confidence            9999764 4567899999999999999886

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.67  E-value=1.3e-15  Score=112.72  Aligned_cols=105  Identities=17%  Similarity=0.273  Sum_probs=86.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+..+|||||||+|..+..+++..+ +.+++++|+++.+++.|++++...++ ++++++++|+.++...+.     .++|
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~-----~~~~  109 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFE-----PGEV  109 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCC-----TTSC
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcC-----cCCc
Confidence            3567999999999999999999876 68999999999999999999999887 689999999987432221     4689


Q ss_pred             eEEEEcCC---Cc--------ccHHHHHHHHhcccCCeEEEEe
Q 029836           98 DFVFVDAD---KD--------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        98 D~v~~d~~---~~--------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |.|++..+   ..        ....+++.+.+.|+|||.+++.
T Consensus       110 d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~  152 (213)
T 2fca_A          110 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  152 (213)
T ss_dssp             CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             CEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence            99987532   11        1478899999999999999874

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.67  E-value=5.8e-16  Score=113.95  Aligned_cols=112  Identities=18%  Similarity=0.233  Sum_probs=91.4

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .+.....+...+...++.+|||+|||+|..+..+++.   ..+++++|+++.+++.++++++..+.. ++++.++|..+.
T Consensus        62 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~  137 (210)
T 3lbf_A           62 QPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQG  137 (210)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGC
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccC
Confidence            4555566666666677889999999999999999987   579999999999999999999998874 899999999775


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+.       .++||+|+++.......   +.+.++|+|||.+++.
T Consensus       138 ~~~-------~~~~D~i~~~~~~~~~~---~~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          138 WQA-------RAPFDAIIVTAAPPEIP---TALMTQLDEGGILVLP  173 (210)
T ss_dssp             CGG-------GCCEEEEEESSBCSSCC---THHHHTEEEEEEEEEE
T ss_pred             Ccc-------CCCccEEEEccchhhhh---HHHHHhcccCcEEEEE
Confidence            432       46899999987644433   2578899999999874

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.67  E-value=2.4e-16  Score=120.16  Aligned_cols=118  Identities=13%  Similarity=0.166  Sum_probs=92.9

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHH---cCCCCceEEEeCCchHHHHH
Q 029836           10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK---AGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~---~~~~~~i~~~~~d~~~~l~~   86 (187)
                      +|..++...++.+|||+|||+|..++.++...+ ..+++++|+++.+++.|++++..   +++.++++++++|..+..+.
T Consensus        27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~  105 (260)
T 2ozv_A           27 LLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKA  105 (260)
T ss_dssp             HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHH
T ss_pred             HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhh
Confidence            344444445667999999999999999999876 68999999999999999999998   88877899999999877543


Q ss_pred             HhhcccCCCceeEEEEcCCC---------------------cccHHHHHHHHhcccCCeEEEE
Q 029836           87 LIQDEKYHGTFDFVFVDADK---------------------DNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~~---------------------~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ........++||+|+++++.                     ..+..+++.+.++|+|||.+++
T Consensus       106 ~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  168 (260)
T 2ozv_A          106 RVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL  168 (260)
T ss_dssp             HHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence            21100014689999998541                     1256788999999999999986

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.67  E-value=6.9e-15  Score=115.76  Aligned_cols=115  Identities=15%  Similarity=0.132  Sum_probs=91.6

Q ss_pred             HHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC-ceEEEeCCchHHHHHHh
Q 029836           11 FSMLLK-LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH-KIDFREGPALPLLDQLI   88 (187)
Q Consensus        11 l~~l~~-~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~   88 (187)
                      +..++. ..++.+|||+|||+|..++.++..   +.+|+++|+++.+++.|++|++.+++.+ +++++++|+.++++...
T Consensus       144 l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~  220 (332)
T 2igt_A          144 LKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREE  220 (332)
T ss_dssp             HHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHH
Confidence            444443 235679999999999999999975   3599999999999999999999998865 59999999998776532


Q ss_pred             hcccCCCceeEEEEcCCC-------------cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           89 QDEKYHGTFDFVFVDADK-------------DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~~-------------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..   .++||+|++|++.             ..+..+++.+.++|+|||++++...
T Consensus       221 ~~---~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~  273 (332)
T 2igt_A          221 RR---GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  273 (332)
T ss_dssp             HH---TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             hc---CCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence            11   3589999999762             1256788889999999999776543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.66  E-value=9e-16  Score=113.47  Aligned_cols=104  Identities=19%  Similarity=0.275  Sum_probs=87.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||||||+|..+..+++..| +.+++++|+++.+++.|++++...++ ++++++++|+.++...+.     .++||
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~-----~~~~D  113 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFE-----DGEID  113 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSC-----TTCCS
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcC-----CCCCC
Confidence            467999999999999999999876 68999999999999999999999888 789999999976322121     46899


Q ss_pred             EEEEcCCCc-----------ccHHHHHHHHhcccCCeEEEEe
Q 029836           99 FVFVDADKD-----------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        99 ~v~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|++..+..           .+..+++.+.+.|+|||++++.
T Consensus       114 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          114 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence            999885421           2367999999999999999873

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.66  E-value=1.2e-15  Score=119.41  Aligned_cols=122  Identities=17%  Similarity=0.256  Sum_probs=98.8

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +.....++..++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.++++++..++ .+++++++|+.++
T Consensus       103 qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~-~~v~~~~~D~~~~  181 (315)
T 1ixk_A          103 QEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHI  181 (315)
T ss_dssp             CCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGG
T ss_pred             eCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CeEEEEECChhhc
Confidence            344555666666667778999999999999999999876568999999999999999999999988 4799999999765


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcc-------------------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDN-------------------------YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .. .      .++||+|++|++...                         ...+++.+.++|||||.+++..+..
T Consensus       182 ~~-~------~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          182 GE-L------NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             GG-G------CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cc-c------cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            33 2      568999999865110                         1478889999999999999876543

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.66  E-value=1.3e-15  Score=124.16  Aligned_cols=122  Identities=16%  Similarity=0.167  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      .....++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.+++|++..|+ .++.+.++|+.++.
T Consensus        91 d~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~-~nv~v~~~Da~~l~  169 (456)
T 3m4x_A           91 EPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV-SNAIVTNHAPAELV  169 (456)
T ss_dssp             CTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC-SSEEEECCCHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhh
Confidence            33445666666667788999999999999999998876568999999999999999999999998 47999999998765


Q ss_pred             HHHhhcccCCCceeEEEEcCCCc-------------------------ccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           85 DQLIQDEKYHGTFDFVFVDADKD-------------------------NYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +..      .++||+|++|++..                         ....+++.+.++|||||.|++..+..
T Consensus       170 ~~~------~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          170 PHF------SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             HHH------TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             hhc------cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            444      57899999997621                         01267888899999999999876654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.66  E-value=5.1e-16  Score=119.10  Aligned_cols=114  Identities=14%  Similarity=0.093  Sum_probs=94.4

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836            8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      .+.+..+....+.++|||+|||+|.+++.+++..+ .++|+++|+++.+++.|+++++.+++ ++++++++|+.+. +. 
T Consensus       108 ~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l-~~~~~~~~d~~~~-~~-  183 (272)
T 3a27_A          108 EERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKL-NNVIPILADNRDV-EL-  183 (272)
T ss_dssp             HHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTC-SSEEEEESCGGGC-CC-
T ss_pred             HHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEECChHHc-Cc-
Confidence            34444444455678999999999999999998865 57999999999999999999999988 4789999999876 32 


Q ss_pred             hhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           88 IQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                            .++||+|++|++. ....++..+.+.|+|||++++....
T Consensus       184 ------~~~~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~~~  221 (272)
T 3a27_A          184 ------KDVADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHETV  221 (272)
T ss_dssp             ------TTCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             ------cCCceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence                  3589999999865 6677888999999999999876543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.66  E-value=4.2e-16  Score=120.04  Aligned_cols=108  Identities=19%  Similarity=0.256  Sum_probs=91.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++.+|||||||+|.++..+++.++.+.+++++|+++.+++.+++++...+.  ++++.++|+.+...        .+
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~--------~~   88 (284)
T 3gu3_A           19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL--------ND   88 (284)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC--------SS
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCc--------CC
Confidence            455788999999999999999999887558999999999999999999987654  89999999976321        46


Q ss_pred             ceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           96 TFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        96 ~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +||+|++...   ..+...+++.+.+.|+|||++++.+..|
T Consensus        89 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  129 (284)
T 3gu3_A           89 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW  129 (284)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             CeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecch
Confidence            8999999865   3456889999999999999999877653

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.66  E-value=1.6e-16  Score=116.79  Aligned_cols=119  Identities=13%  Similarity=0.211  Sum_probs=76.6

Q ss_pred             CHHHHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836            4 SPDEAQFFSMLLKL----INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP   79 (187)
Q Consensus         4 ~~~~~~~l~~l~~~----~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d   79 (187)
                      .+++..++..++..    .++.+|||+|||+|..+..+++..+ +.+++++|+++.+++.+++++...+.  +++++++|
T Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d   87 (215)
T 4dzr_A           11 RPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGA--VVDWAAAD   87 (215)
T ss_dssp             CHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC---------------------CCHHH
T ss_pred             CccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcc
Confidence            46677777777765    4677999999999999999999875 67999999999999999999988776  78999999


Q ss_pred             chHHHHHHhhcccCCCceeEEEEcCCC---cc--------------------------cHHHHHHHHhcccCCeE-EEE
Q 029836           80 ALPLLDQLIQDEKYHGTFDFVFVDADK---DN--------------------------YVNYHKRLIELVKVGGV-IGY  128 (187)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~D~v~~d~~~---~~--------------------------~~~~~~~~~~~L~~gG~-lv~  128 (187)
                      +.+.++.....   .++||+|+++++.   ..                          +..+++.+.++|+|||+ +++
T Consensus        88 ~~~~~~~~~~~---~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  163 (215)
T 4dzr_A           88 GIEWLIERAER---GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFL  163 (215)
T ss_dssp             HHHHHHHHHHT---TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEE
T ss_pred             hHhhhhhhhhc---cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            88755531111   3789999997541   00                          15677788899999999 554

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.66  E-value=4.8e-15  Score=107.07  Aligned_cols=108  Identities=12%  Similarity=0.048  Sum_probs=89.2

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC-ceEEEeCCchHHHHHHhhcc
Q 029836           13 MLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH-KIDFREGPALPLLDQLIQDE   91 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~   91 (187)
                      ..+...++.+|||+|||+|..+..+++.   ..+++++|+++.+++.+++++...+..+ +++++++|..+.++      
T Consensus        46 ~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~------  116 (194)
T 1dus_A           46 ENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK------  116 (194)
T ss_dssp             HHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT------
T ss_pred             HHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc------
Confidence            3334456789999999999999999876   5799999999999999999999888743 49999999876543      


Q ss_pred             cCCCceeEEEEcCCC----cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           92 KYHGTFDFVFVDADK----DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~----~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                        .++||+|+++...    .....+++.+.++|+|||.+++...
T Consensus       117 --~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  158 (194)
T 1dus_A          117 --DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             --TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence              4689999998752    3456788999999999999998643

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.66  E-value=4.7e-15  Score=106.26  Aligned_cols=113  Identities=16%  Similarity=0.085  Sum_probs=93.3

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .+...+.+...+...++.+|||+|||+|..+..+++  + ..+++++|+++.+++.++++++..++ ++++++++|..+.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~   95 (183)
T 2yxd_A           20 KEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--R-CKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDV   95 (183)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--T-SSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--c-CCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCcccc
Confidence            344445555555556778999999999999999987  3 68999999999999999999999887 6899999999874


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ++        .++||+|+++.. .....+++.+.++  |||.+++...
T Consensus        96 ~~--------~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A           96 LD--------KLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             GG--------GCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             cc--------CCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEec
Confidence            33        358999999887 7778888888887  9999998653

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.65  E-value=1.6e-15  Score=116.59  Aligned_cols=103  Identities=14%  Similarity=0.124  Sum_probs=89.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++++|||+|||+|.+++.+++..+  .+|+++|+++.+++.|+++++.+++.++++++++|+.++..        .++||
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~--~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--------~~~fD  194 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIAD  194 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCEE
T ss_pred             CCCEEEEecccCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--------cCCcc
Confidence            478999999999999999998754  38999999999999999999999997789999999987654        46899


Q ss_pred             EEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           99 FVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|+++.+ .....+++.+.++|+|||++++....
T Consensus       195 ~Vi~~~p-~~~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          195 RILMGYV-VRTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             EEEECCC-SSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEECCc-hhHHHHHHHHHHHCCCCeEEEEEEee
Confidence            9999875 34467888999999999999986654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.65  E-value=1.7e-15  Score=116.52  Aligned_cols=104  Identities=14%  Similarity=0.231  Sum_probs=88.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||||||+|..+..+++.   +.+++++|+++.+++.+++++...++.++++++++|+.+..+..      .++||
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~fD  138 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHL------ETPVD  138 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGC------SSCEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhc------CCCce
Confidence            3569999999999999999986   57999999999999999999999888789999999997654221      57999


Q ss_pred             EEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           99 FVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        99 ~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|++...   ..+...+++.+.++|+|||++++...
T Consensus       139 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          139 LILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            9998765   34567899999999999999998654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.65  E-value=7e-16  Score=115.68  Aligned_cols=114  Identities=17%  Similarity=0.184  Sum_probs=87.3

Q ss_pred             HHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836           10 FFSMLLKL--INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus        10 ~l~~l~~~--~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      ++..++..  .++.+|||||||+|..+..+++..  ..+++++|+++.+++.|+++.+..+  .+++++++|+.+.++.+
T Consensus        49 ~~~~l~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~  124 (236)
T 1zx0_A           49 YMHALAAAASSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL  124 (236)
T ss_dssp             HHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS
T ss_pred             HHHHHHhhcCCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhccc
Confidence            34444433  456799999999999999997642  3589999999999999999887765  58999999998764433


Q ss_pred             hhcccCCCceeEEEEcCCC--------cccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           88 IQDEKYHGTFDFVFVDADK--------DNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .     +++||+|++|...        .....+++++.++|||||++++.+..
T Consensus       125 ~-----~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          125 P-----DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             C-----TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             C-----CCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            2     5689999994321        11235689999999999999986654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.65  E-value=3.3e-15  Score=120.27  Aligned_cols=112  Identities=16%  Similarity=0.263  Sum_probs=94.3

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC-CCceEEEeCCchHHHHHHhhcccC
Q 029836           15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV-AHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ....++++|||+|||+|..++.++...  ..+|+++|+++.+++.|++|++.+++ .++++++++|+.++++.....   
T Consensus       216 ~~~~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~---  290 (396)
T 3c0k_A          216 RRYVENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---  290 (396)
T ss_dssp             HHHCTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHT---
T ss_pred             HHhhCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhc---
Confidence            334678899999999999999999852  46999999999999999999999988 668999999999887655322   


Q ss_pred             CCceeEEEEcCCC------------cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           94 HGTFDFVFVDADK------------DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .++||+|++|++.            ..+..++..+.++|+|||++++...
T Consensus       291 ~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          291 GEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             TCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            3589999999863            4567888999999999999987543

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.65  E-value=7.1e-16  Score=114.69  Aligned_cols=113  Identities=8%  Similarity=0.105  Sum_probs=92.5

Q ss_pred             HHHHHHhhcC-CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836           10 FFSMLLKLIN-AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus        10 ~l~~l~~~~~-~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      -|+.++...+ +.+|+|||||+|++++.++...+ ..+|+++|+++.+++.|++|++.+++.++++++++|..+.++.  
T Consensus         5 RL~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~--   81 (225)
T 3kr9_A            5 RLELVASFVSQGAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE--   81 (225)
T ss_dssp             HHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--
T ss_pred             HHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc--
Confidence            3566666554 45999999999999999998754 6799999999999999999999999988999999999765542  


Q ss_pred             hcccCCCceeEEEEcCC-CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           89 QDEKYHGTFDFVFVDAD-KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~-~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                           .++||+|++.+. ..-...+++.+...|+++|++|+.-
T Consensus        82 -----~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~  119 (225)
T 3kr9_A           82 -----TDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQP  119 (225)
T ss_dssp             -----GGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEE
T ss_pred             -----CcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEEC
Confidence                 126999987543 3336788889999999999999753

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.65  E-value=4.3e-15  Score=114.57  Aligned_cols=115  Identities=17%  Similarity=0.306  Sum_probs=93.7

Q ss_pred             CHHHHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            4 SPDEAQFFSMLLKL---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         4 ~~~~~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      .+++..++..++..   .++.+|||+|||+|..+..++.. + +.+|+++|+++.+++.|++|++.+++.++++++++|.
T Consensus       105 r~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~  182 (284)
T 1nv8_A          105 RPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEF  182 (284)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESST
T ss_pred             ChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcc
Confidence            45566666665543   35679999999999999999988 5 7899999999999999999999999877899999999


Q ss_pred             hHHHHHHhhcccCCCce---eEEEEcCCCcc----------------------cHHHHHHHH-hcccCCeEEEEe
Q 029836           81 LPLLDQLIQDEKYHGTF---DFVFVDADKDN----------------------YVNYHKRLI-ELVKVGGVIGYD  129 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~---D~v~~d~~~~~----------------------~~~~~~~~~-~~L~~gG~lv~~  129 (187)
                      .+.++         ++|   |+|+++++...                      -..+++.+. +.|+|||++++.
T Consensus       183 ~~~~~---------~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e  248 (284)
T 1nv8_A          183 LEPFK---------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  248 (284)
T ss_dssp             TGGGG---------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             hhhcc---------cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence            87543         367   99999854110                      126889999 999999999974

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.65  E-value=1.9e-15  Score=110.81  Aligned_cols=100  Identities=12%  Similarity=0.067  Sum_probs=87.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..++...+ +.+++++|+++.+++.++++++..+.. ++++.++|+.+..+        .++||
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~--------~~~~D  134 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPS--------EPPFD  134 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCC--------CSCEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCCc--------cCCcC
Confidence            478999999999999999998876 689999999999999999999998874 59999999976532        46899


Q ss_pred             EEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           99 FVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|++.. ...+..+++.+.+.|+|||++++.
T Consensus       135 ~i~~~~-~~~~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          135 GVISRA-FASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             EEECSC-SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             EEEEec-cCCHHHHHHHHHHhcCCCcEEEEE
Confidence            999765 356788999999999999999875

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.65  E-value=3.7e-15  Score=110.14  Aligned_cols=111  Identities=16%  Similarity=0.251  Sum_probs=92.6

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++.+|||+|||+|..+..+++..++..+++++|+++.+++.+++++...+.. ++++.++|..+..  +     ..+
T Consensus        34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--~-----~~~  105 (219)
T 3dh0_A           34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIP--L-----PDN  105 (219)
T ss_dssp             TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCS--S-----CSS
T ss_pred             CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCC--C-----CCC
Confidence            4556789999999999999999988644689999999999999999999998874 8999999986542  1     156


Q ss_pred             ceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           96 TFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        96 ~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      +||+|++...   ..+...+++.+.++|+|||.+++.+....
T Consensus       106 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  147 (219)
T 3dh0_A          106 TVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE  147 (219)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             CeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence            8999998765   34567899999999999999999775544

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.64  E-value=2.8e-15  Score=114.64  Aligned_cols=109  Identities=25%  Similarity=0.292  Sum_probs=91.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|..+..+++..+ +.+++++|+++.+++.+++++...+. ++++++.+|..+...       ..++|
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~-------~~~~f  106 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGI-KNVKFLQANIFSLPF-------EDSSF  106 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGCCS-------CTTCE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CCcEEEEcccccCCC-------CCCCe
Confidence            4678999999999999999999865 68999999999999999999999887 589999999975421       15789


Q ss_pred             eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      |+|++...   ..+...+++.+.++|+|||++++.+..+..
T Consensus       107 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  147 (276)
T 3mgg_A          107 DHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGS  147 (276)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGG
T ss_pred             eEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCC
Confidence            99998764   345678999999999999999997755433

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.64  E-value=5.5e-15  Score=111.01  Aligned_cols=106  Identities=19%  Similarity=0.181  Sum_probs=84.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHH------cCCCCceEEEeCCchHHHHHHhhcc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK------AGVAHKIDFREGPALPLLDQLIQDE   91 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~------~~~~~~i~~~~~d~~~~l~~~~~~~   91 (187)
                      .+..+|||||||+|..+..+++..+ +..++++|+++.+++.|+++++.      .+. .+++++++|+.+.++...+  
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~--  120 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFY--  120 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCC--
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCC--
Confidence            3566899999999999999998876 68999999999999999988764      233 6899999999875654321  


Q ss_pred             cCCCceeEEEEcCCCc-----------ccHHHHHHHHhcccCCeEEEEe
Q 029836           92 KYHGTFDFVFVDADKD-----------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                        .++||.|++.....           ....+++.+.+.|+|||.|++.
T Consensus       121 --~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          121 --KGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             --TTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             --CcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence              46899998764311           1257999999999999999873

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.64  E-value=4.1e-15  Score=115.20  Aligned_cols=118  Identities=14%  Similarity=0.167  Sum_probs=90.9

Q ss_pred             HHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc-CCCCceEEEeCCchHHHHH
Q 029836           10 FFSMLLKL--INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA-GVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus        10 ~l~~l~~~--~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~   86 (187)
                      ++..+...  .++.+|||+|||+|..+..+++.+++..+|+++|+++.+++.|+++++.. +...+++++++|+.+... 
T Consensus        25 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~-  103 (299)
T 3g5t_A           25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKF-  103 (299)
T ss_dssp             HHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGG-
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCc-
Confidence            34444433  36789999999999999999987644789999999999999999999987 455799999999976421 


Q ss_pred             HhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEE
Q 029836           87 LIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ........++||+|++...  .-+...+++.+.+.|+|||++++
T Consensus       104 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          104 LGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             GCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            1000000168999998754  22778899999999999999988

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.64  E-value=4.2e-15  Score=119.25  Aligned_cols=109  Identities=14%  Similarity=0.177  Sum_probs=89.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC-ceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH-KIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .++++|||+|||+|..++.++...  ..+|+++|+++.+++.|++|++.+++.+ +++++++|+.++++.....   ..+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~---~~~  285 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH---HLT  285 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT---TCC
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHh---CCC
Confidence            567899999999999999999752  3589999999999999999999999865 8999999999887765322   358


Q ss_pred             eeEEEEcCCCc------------ccHHHHHHHHhcccCCeEEEEeCc
Q 029836           97 FDFVFVDADKD------------NYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        97 ~D~v~~d~~~~------------~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ||+|++|++..            .+..++..+.++|+|||++++...
T Consensus       286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            99999997631            234466777899999999988643

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.64  E-value=8.5e-16  Score=118.91  Aligned_cols=115  Identities=16%  Similarity=0.287  Sum_probs=87.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC---------------------------
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA---------------------------   70 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~---------------------------   70 (187)
                      .++++|||||||+|..+..++..++ ..+|+++|+++.+++.|+++++..+..                           
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR  123 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            3678999999999999999999886 579999999999999999987765422                           


Q ss_pred             ------------------------------CceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC---------cccHH
Q 029836           71 ------------------------------HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK---------DNYVN  111 (187)
Q Consensus        71 ------------------------------~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~---------~~~~~  111 (187)
                                                    .+++|.++|.......+...  ..++||+|++....         .....
T Consensus       124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~--~~~~fD~I~~~~vl~~ihl~~~~~~~~~  201 (292)
T 3g07_A          124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEA--QTPEYDVVLCLSLTKWVHLNWGDEGLKR  201 (292)
T ss_dssp             ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTT--CCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccCccccccccccccccccccccceEEecccccCccccccc--cCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence                                          58999999986433222111  15799999987641         14567


Q ss_pred             HHHHHHhcccCCeEEEEeCcCCCc
Q 029836          112 YHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus       112 ~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      +++.+.++|+|||+|++....|..
T Consensus       202 ~l~~~~~~LkpGG~lil~~~~~~~  225 (292)
T 3g07_A          202 MFRRIYRHLRPGGILVLEPQPWSS  225 (292)
T ss_dssp             HHHHHHHHEEEEEEEEEECCCHHH
T ss_pred             HHHHHHHHhCCCcEEEEecCCchh
Confidence            899999999999999997666543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.63  E-value=2.1e-15  Score=115.79  Aligned_cols=114  Identities=21%  Similarity=0.304  Sum_probs=93.5

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      ....+...+...++.+|||+|||+|..+..+++.+.+..+++++|+++.+++.|+++++..++.++++++++|..+.++ 
T Consensus       100 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-  178 (277)
T 1o54_A          100 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD-  178 (277)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS-
T ss_pred             HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc-
Confidence            3334444445566789999999999999999998654689999999999999999999998886789999999976632 


Q ss_pred             HhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           87 LIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                             .++||+|+++..  ....+++.+.+.|+|||.+++..
T Consensus       179 -------~~~~D~V~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          179 -------EKDVDALFLDVP--DPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             -------CCSEEEEEECCS--CGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             -------CCccCEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence                   468999999764  33477888999999999998754

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.63  E-value=2.6e-15  Score=114.57  Aligned_cols=120  Identities=15%  Similarity=0.270  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            6 DEAQFFSMLLKL---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         6 ~~~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      .+..++..++..   .++.+|||||||+|..+..+++..  +.+++++|+++.+++.++++++..++.+++++.++|+.+
T Consensus        45 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  122 (273)
T 3bus_A           45 ATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD  122 (273)
T ss_dssp             HHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc
Confidence            344555555544   356799999999999999999875  479999999999999999999999987899999999875


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      . + +     ..++||+|++...   ..+...+++.+.++|+|||.+++.+....
T Consensus       123 ~-~-~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  170 (273)
T 3bus_A          123 L-P-F-----EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLL  170 (273)
T ss_dssp             C-C-S-----CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred             C-C-C-----CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeecc
Confidence            3 1 1     0468999997654   34567899999999999999999876543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.63  E-value=3.3e-15  Score=112.22  Aligned_cols=119  Identities=18%  Similarity=0.220  Sum_probs=95.6

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      ++....-+..++...++.+|||+|||+|..+..++...   .+++++|+++.+++.+++++...+. +++++.++|+.+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~   81 (239)
T 1xxl_A            6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESL   81 (239)
T ss_dssp             CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBC
T ss_pred             cCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC-CCeEEEecccccC
Confidence            34444555555667788899999999999999998763   5899999999999999999998887 4899999998653


Q ss_pred             HHHHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                       + +     ..++||+|++...   ..+...+++.+.++|+|||++++.+...
T Consensus        82 -~-~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           82 -P-F-----PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             -C-S-----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             -C-C-----CCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence             2 1     1468999998754   3456889999999999999999866543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.63  E-value=2.8e-15  Score=110.64  Aligned_cols=115  Identities=22%  Similarity=0.275  Sum_probs=91.3

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .+.....+..++...++.+|||+|||+|..+..+++..++..+++++|+++.+++.+++++...+. +++++.++|....
T Consensus        62 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~  140 (215)
T 2yxe_A           62 AIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-DNVIVIVGDGTLG  140 (215)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEESCGGGC
T ss_pred             cHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccC
Confidence            345555555555666778999999999999999998864358999999999999999999998887 4699999998654


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++.       .++||+|++........   +.+.++|+|||.+++.
T Consensus       141 ~~~-------~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~lv~~  176 (215)
T 2yxe_A          141 YEP-------LAPYDRIYTTAAGPKIP---EPLIRQLKDGGKLLMP  176 (215)
T ss_dssp             CGG-------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             CCC-------CCCeeEEEECCchHHHH---HHHHHHcCCCcEEEEE
Confidence            331       35899999987644333   4778999999999875

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.63  E-value=2.6e-15  Score=117.46  Aligned_cols=115  Identities=18%  Similarity=0.301  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      +.....+...+...++.+|||||||+|..+..+++..+..++|+++|+++++++.|+++++..++. ++++.++|..+.+
T Consensus        61 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~  139 (317)
T 1dl5_A           61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGV  139 (317)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhcc
Confidence            344455555555667789999999999999999987653578999999999999999999998884 5999999997654


Q ss_pred             HHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           85 DQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +.       .++||+|+++.......   +.+.+.|||||.+++..
T Consensus       140 ~~-------~~~fD~Iv~~~~~~~~~---~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          140 PE-------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             GG-------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEEB
T ss_pred             cc-------CCCeEEEEEcCCHHHHH---HHHHHhcCCCcEEEEEE
Confidence            32       46899999987644443   56778999999999863

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.63  E-value=7.2e-15  Score=113.06  Aligned_cols=117  Identities=9%  Similarity=0.070  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            6 DEAQFFSMLLKL---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         6 ~~~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      .+...+..++..   .++.+|||||||+|..+..+++..+  .+|+++|+++.+++.++++++..+..+++++.++|..+
T Consensus        48 a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  125 (287)
T 1kpg_A           48 AQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ  125 (287)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred             HHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh
Confidence            344555555543   3567999999999999999996653  59999999999999999999998887899999999854


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      +          .++||+|++...     ..+...+++.+.++|||||.+++.+....
T Consensus       126 ~----------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  172 (287)
T 1kpg_A          126 F----------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL  172 (287)
T ss_dssp             C----------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             C----------CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence            3          358999998754     25678899999999999999999776543

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.63  E-value=4.7e-15  Score=121.85  Aligned_cols=122  Identities=13%  Similarity=0.180  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            5 PDEAQFFSMLLKLI--NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         5 ~~~~~~l~~l~~~~--~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      .....++..++...  ++.+|||+|||+|..+..+++.++..++|+++|+++.+++.++++++..|+ .+++++++|+.+
T Consensus       101 d~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~-~nv~~~~~D~~~  179 (479)
T 2frx_A          101 EASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI-SNVALTHFDGRV  179 (479)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCCSTT
T ss_pred             CHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCCHHH
Confidence            34445555566655  778999999999999999999876568999999999999999999999998 579999999976


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCCc---------c----------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADKD---------N----------------YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +....      .++||.|++|++..         +                ...+++.+.++|||||.|++..+.+
T Consensus       180 ~~~~~------~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          180 FGAAV------PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             HHHHS------TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hhhhc------cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence            54322      56899999986521         0                1357888889999999999876644

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.62  E-value=4.2e-15  Score=119.62  Aligned_cols=111  Identities=22%  Similarity=0.353  Sum_probs=93.1

Q ss_pred             hhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           16 KLI-NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        16 ~~~-~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ... ++++|||+|||+|..+..++.. + ..+|+++|+++.+++.|+++++.+++.++++++++|+.+.++.+...   .
T Consensus       213 ~~~~~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~---~  287 (396)
T 2as0_A          213 KWVQPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK---G  287 (396)
T ss_dssp             GGCCTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT---T
T ss_pred             HHhhCCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhh---C
Confidence            344 6789999999999999999976 2 46999999999999999999999988668999999998887654322   4


Q ss_pred             CceeEEEEcCCC------------cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           95 GTFDFVFVDADK------------DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        95 ~~~D~v~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ++||+|++|++.            ..+..++..+.++|+|||++++...
T Consensus       288 ~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          288 EKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             CCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            589999999873            4467788899999999998887544

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.62  E-value=1.3e-16  Score=119.82  Aligned_cols=112  Identities=16%  Similarity=0.128  Sum_probs=89.6

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836            8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      ..++..+....++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++++..++.++++++++|+.+..+  
T Consensus        67 ~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--  141 (241)
T 3gdh_A           67 EHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS--  141 (241)
T ss_dssp             HHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG--
T ss_pred             HHHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc--
Confidence            344444555557899999999999999999985   489999999999999999999999887799999999987652  


Q ss_pred             hhcccCCCceeEEEEcCCCcc---cHHHHHHHHhcccCCeEEEEeC
Q 029836           88 IQDEKYHGTFDFVFVDADKDN---YVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~~~~---~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                            .++||+|+++.....   ....+..+.++|+|||+++++.
T Consensus       142 ------~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          142 ------FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             ------GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             ------cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence                  568999999876222   2224456778999999987643

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.62  E-value=1.4e-15  Score=111.69  Aligned_cols=115  Identities=13%  Similarity=0.068  Sum_probs=84.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC-----------CCC
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG-----------VAH   71 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~-----------~~~   71 (187)
                      .++...+++..+ ...++.+|||+|||+|..+.++++.   +.+|+++|+|+.+++.|+++.....           ...
T Consensus         7 ~~~~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~   82 (203)
T 1pjz_A            7 VNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP   82 (203)
T ss_dssp             STHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS
T ss_pred             CCHHHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCC
Confidence            344455555443 2346789999999999999999986   4699999999999999998764210           125


Q ss_pred             ceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEE
Q 029836           72 KIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        72 ~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      +++++++|+.+....-      .++||+|+....     ......+++++.++|||||.++
T Consensus        83 ~v~~~~~d~~~l~~~~------~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~  137 (203)
T 1pjz_A           83 GIEIWCGDFFALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGL  137 (203)
T ss_dssp             SSEEEEECCSSSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred             ccEEEECccccCCccc------CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence            7999999997653211      158999997543     1234568899999999999833

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.62  E-value=3.6e-15  Score=113.21  Aligned_cols=107  Identities=17%  Similarity=0.248  Sum_probs=88.0

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      +...++.+|||+|||+|.++..+++..   .+++++|+++.+++.++++++..+. +++++.++|+.+. + +.     +
T Consensus        33 l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~l-~-~~-----~  101 (260)
T 1vl5_A           33 AALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQM-P-FT-----D  101 (260)
T ss_dssp             HTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CC-C-SC-----T
T ss_pred             hCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEecHHhC-C-CC-----C
Confidence            344567899999999999999998764   4999999999999999999998887 4899999998653 2 11     4


Q ss_pred             CceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           95 GTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        95 ~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ++||+|++...   ..+...++.++.+.|+|||++++.+..
T Consensus       102 ~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~  142 (260)
T 1vl5_A          102 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  142 (260)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            68999998754   345678999999999999999986543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.62  E-value=5.6e-15  Score=107.38  Aligned_cols=107  Identities=15%  Similarity=0.093  Sum_probs=88.0

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhccc
Q 029836           13 MLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      .++...++.+|||+|||+|..+..+++.   +.+++++|+++.+++.++++++..+. +++++.++|..+...       
T Consensus        26 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~-------   94 (199)
T 2xvm_A           26 EAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDLNNLTF-------   94 (199)
T ss_dssp             HHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECCGGGCCC-------
T ss_pred             HHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCC-CCcEEEEcchhhCCC-------
Confidence            3445567789999999999999999976   46999999999999999999988877 579999999875421       


Q ss_pred             CCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           93 YHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        93 ~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                       .++||+|++...     .+....+++.+.++|+|||.+++.+.
T Consensus        95 -~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A           95 -DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             -CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence             368999998754     23567899999999999999776443

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.62  E-value=2.1e-14  Score=116.76  Aligned_cols=122  Identities=16%  Similarity=0.199  Sum_probs=98.9

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +.....++..++...++.+|||+|||+|..+..+++..+ +++++++|+++.+++.++++++..+.  +++++++|+.+.
T Consensus       231 qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~  307 (429)
T 1sqg_A          231 QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYP  307 (429)
T ss_dssp             CCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCT
T ss_pred             eCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhc
Confidence            445566666777777788999999999999999999876 48999999999999999999999887  478999999766


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcc-------------------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDN-------------------------YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .+.+.     .++||+|++|++...                         ...+++.+.++|||||.+++..+.+
T Consensus       308 ~~~~~-----~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          308 SQWCG-----EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             HHHHT-----TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             hhhcc-----cCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            44331     368999999875211                         1467888999999999999877654

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.62  E-value=6.9e-15  Score=120.22  Aligned_cols=124  Identities=18%  Similarity=0.196  Sum_probs=99.0

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +.....++..++...++.+|||+|||+|..+..+++.++..++++++|+++.+++.++++++..|+ .+++++++|+.+.
T Consensus       244 qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-~~v~~~~~D~~~~  322 (450)
T 2yxl_A          244 QEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-KIVKPLVKDARKA  322 (450)
T ss_dssp             CCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCTTCC
T ss_pred             cCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEEEcChhhc
Confidence            344556666666767778999999999999999999876448999999999999999999999988 5799999998765


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcc-------------------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDN-------------------------YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .+.+.     .++||+|++|++...                         ...+++.+.++|||||.+++..+..
T Consensus       323 ~~~~~-----~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          323 PEIIG-----EEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             SSSSC-----SSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             chhhc-----cCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            32220     268999999865211                         0567889999999999999876644

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.62  E-value=3.1e-15  Score=111.53  Aligned_cols=103  Identities=18%  Similarity=0.260  Sum_probs=84.4

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..++.+|||+||| +|..+..+++..  ..+|+++|+++.+++.|+++++..+.  +++++++|+.... .+.     .+
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~-~~~-----~~  122 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIK-GVV-----EG  122 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSST-TTC-----CS
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhh-hcc-----cC
Confidence            3467899999999 999999999874  57999999999999999999999887  8999999964221 111     46


Q ss_pred             ceeEEEEcCCCc----------------------ccHHHHHHHHhcccCCeEEEEe
Q 029836           96 TFDFVFVDADKD----------------------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        96 ~~D~v~~d~~~~----------------------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +||+|+++++..                      .+..+++.+.++|+|||.+++.
T Consensus       123 ~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          123 TFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             CEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence            899999986511                      1367899999999999999873

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.62  E-value=5.7e-15  Score=109.89  Aligned_cols=119  Identities=16%  Similarity=0.247  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCchHHHHHHHHHHHcCC----CCceE
Q 029836            5 PDEAQFFSMLL--KLINAKNTMEIGVFTGYSLLATALAIP----DDGKILALDITKEHYEKGLPIIQKAGV----AHKID   74 (187)
Q Consensus         5 ~~~~~~l~~l~--~~~~~~~vLeiG~g~G~~~~~l~~~~~----~~~~v~~vd~~~~~~~~a~~~~~~~~~----~~~i~   74 (187)
                      |.....+..++  ...++.+|||||||+|..+..+++...    +.++|+++|+++.+++.|+++++..+.    ..+++
T Consensus        64 p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~  143 (227)
T 2pbf_A           64 PHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFK  143 (227)
T ss_dssp             HHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEE
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEE
Confidence            34444433333  345678999999999999999998864    457999999999999999999998873    36899


Q ss_pred             EEeCCchHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           75 FREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        75 ~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++.+|..+..+.....   .++||+|+++.....   +++.+.++|+|||.+++.
T Consensus       144 ~~~~d~~~~~~~~~~~---~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lv~~  192 (227)
T 2pbf_A          144 IIHKNIYQVNEEEKKE---LGLFDAIHVGASASE---LPEILVDLLAENGKLIIP  192 (227)
T ss_dssp             EEECCGGGCCHHHHHH---HCCEEEEEECSBBSS---CCHHHHHHEEEEEEEEEE
T ss_pred             EEECChHhcccccCcc---CCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEE
Confidence            9999997753110000   368999999876443   346778899999999874

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.62  E-value=2.9e-15  Score=115.79  Aligned_cols=108  Identities=16%  Similarity=0.243  Sum_probs=91.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..+++.+  +.+++++|+++.+++.++++++..++.++++++++|+.+. + +     .+++
T Consensus        80 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~  150 (297)
T 2o57_A           80 LQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P-C-----EDNS  150 (297)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S-S-----CTTC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-C-C-----CCCC
Confidence            3467899999999999999999875  3699999999999999999999999888999999998753 2 1     0468


Q ss_pred             eeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           97 FDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        97 ~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ||+|++...   ..+...+++.+.++|||||.+++.+...
T Consensus       151 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  190 (297)
T 2o57_A          151 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK  190 (297)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            999998754   3446889999999999999999987654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.62  E-value=3.6e-15  Score=113.16  Aligned_cols=117  Identities=10%  Similarity=-0.005  Sum_probs=86.2

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHH----------c------
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK----------A------   67 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~----------~------   67 (187)
                      ++...+++..+....++.+|||+|||+|..+.+|++.   +.+|++||+++.+++.|++....          .      
T Consensus        53 ~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~  129 (252)
T 2gb4_A           53 HQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFK  129 (252)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEE
T ss_pred             CHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccc
Confidence            3444455544443346789999999999999999975   57999999999999999765431          0      


Q ss_pred             CCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe
Q 029836           68 GVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        68 ~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ....+++++++|+.+.....      .++||+|+....     ......+++.+.++|||||.+++.
T Consensus       130 ~~~~~i~~~~~D~~~l~~~~------~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          130 SSSGSISLYCCSIFDLPRAN------IGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             ETTSSEEEEESCTTTGGGGC------CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cCCCceEEEECccccCCccc------CCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            01258999999997653211      268999996543     234567899999999999998643

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.62  E-value=1e-15  Score=114.33  Aligned_cols=104  Identities=13%  Similarity=0.150  Sum_probs=85.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++..+ +.+++++|+++.+++.++++++..+   +++++++|+.+...        .++|
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~--------~~~f  110 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF--------EEKY  110 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC--------CSCE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC--------CCCc
Confidence            3568999999999999999999876 6899999999999999998876543   89999999976422        3689


Q ss_pred             eEEEEcCCCc-----ccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           98 DFVFVDADKD-----NYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        98 D~v~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      |+|++.....     ....+++.+.+.|+|||.+++.+...
T Consensus       111 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  151 (234)
T 3dtn_A          111 DMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH  151 (234)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             eEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            9999886521     22358999999999999999877554

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.62  E-value=3.6e-14  Score=102.21  Aligned_cols=156  Identities=12%  Similarity=-0.017  Sum_probs=103.0

Q ss_pred             HHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            7 EAQFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         7 ~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      ...+....... .++.+|||+|||+|..++.++...| ..+++++|+++.+++.+++++...|...++++  .|.....+
T Consensus        36 ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~  112 (200)
T 3fzg_A           36 LNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVY  112 (200)
T ss_dssp             HHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHT
T ss_pred             HHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCC
Confidence            34454454443 5588999999999999999987766 67999999999999999999999998667777  45543322


Q ss_pred             HHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC-Ccc-ccCCCCCCchhhhhhHHHHHHHHH
Q 029836           86 QLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW-GGS-VVAPPDADLDEHFLYLRDFVQELN  160 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                              .++||+|++-..   -++....+..+.+.|++||++|--++-. .|. ....+.            ....|.
T Consensus       113 --------~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~------------Y~~~~~  172 (200)
T 3fzg_A          113 --------KGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEEN------------YQLWFE  172 (200)
T ss_dssp             --------TSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCC------------HHHHHH
T ss_pred             --------CCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhh------------HHHHHH
Confidence                    578999997643   1222223447889999999998654211 121 111111            223444


Q ss_pred             HHHhcCCCeeEEEeecCCeeEEEEEc
Q 029836          161 KALAVDPRIEICQISIADGVTLCRRI  186 (187)
Q Consensus       161 ~~~~~~~~~~~~~~p~~~G~~i~~k~  186 (187)
                      +.+ .......-.+-+++-+....++
T Consensus       173 ~~~-~~~~~~~~~~~~~nEl~y~~~~  197 (200)
T 3fzg_A          173 SFT-KGWIKILDSKVIGNELVYITSG  197 (200)
T ss_dssp             HHT-TTTSCEEEEEEETTEEEEEECC
T ss_pred             Hhc-cCcceeeeeeeeCceEEEEEec
Confidence            445 3444555566677777665543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.61  E-value=2.8e-15  Score=111.71  Aligned_cols=113  Identities=12%  Similarity=0.123  Sum_probs=92.4

Q ss_pred             HHHHHHhhcC-CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836           10 FFSMLLKLIN-AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus        10 ~l~~l~~~~~-~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      -|+.++...+ +.+|+|||||+|++++.+++..+ ..+|+++|+++.+++.|++|++.+++.++++++++|..+.++.  
T Consensus        11 RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~--   87 (230)
T 3lec_A           11 RLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE--   87 (230)
T ss_dssp             HHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--
T ss_pred             HHHHHHHhCCCCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc--
Confidence            4555665554 56999999999999999998744 5789999999999999999999999988999999999876532  


Q ss_pred             hcccCCCceeEEEEcCC-CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           89 QDEKYHGTFDFVFVDAD-KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~-~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                           .++||+|++.+. ..-...+++...+.|+++|.+|+..
T Consensus        88 -----~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp  125 (230)
T 3lec_A           88 -----ADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQP  125 (230)
T ss_dssp             -----GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred             -----ccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEEC
Confidence                 237999887543 3446778888889999999999754

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.61  E-value=4.1e-15  Score=117.19  Aligned_cols=115  Identities=17%  Similarity=0.180  Sum_probs=87.5

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC----------CCCceEEEe
Q 029836            8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG----------VAHKIDFRE   77 (187)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~----------~~~~i~~~~   77 (187)
                      ...+-..+...++.+|||+|||+|..+..+++..++..+|+++|+++.+++.|+++++..+          ...++++++
T Consensus        94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            3444444466678899999999999999999875446899999999999999999998643          236899999


Q ss_pred             CCchHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           78 GPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        78 ~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+.+..+.+.     .++||+|+++...  ...+++.+.+.|+|||.+++.
T Consensus       174 ~d~~~~~~~~~-----~~~fD~V~~~~~~--~~~~l~~~~~~LkpgG~lv~~  218 (336)
T 2b25_A          174 KDISGATEDIK-----SLTFDAVALDMLN--PHVTLPVFYPHLKHGGVCAVY  218 (336)
T ss_dssp             SCTTCCC------------EEEEEECSSS--TTTTHHHHGGGEEEEEEEEEE
T ss_pred             CChHHcccccC-----CCCeeEEEECCCC--HHHHHHHHHHhcCCCcEEEEE
Confidence            99987543331     4579999998642  233788999999999999863

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.61  E-value=1e-15  Score=119.00  Aligned_cols=109  Identities=14%  Similarity=0.094  Sum_probs=89.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..++....++.+++++|+++.+++.+++++...+..++++++++|+.+...        .++
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~  187 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT--------REG  187 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC--------CSC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc--------cCC
Confidence            356789999999999999998633333689999999999999999999998887789999999976421        468


Q ss_pred             eeEEEEcCC------CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           97 FDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        97 ~D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ||+|++...      ......+++.+.+.|+|||++++.+...
T Consensus       188 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  230 (305)
T 3ocj_A          188 YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP  230 (305)
T ss_dssp             EEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred             eEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            999998664      1222347999999999999999987654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.61  E-value=4.6e-15  Score=112.26  Aligned_cols=112  Identities=17%  Similarity=0.139  Sum_probs=91.4

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc-CCCCceEEEeCCchHH-HH
Q 029836            8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA-GVAHKIDFREGPALPL-LD   85 (187)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~-l~   85 (187)
                      ...+...+...++.+|||+|||+|..+..+++.+.+..+++++|+++.+++.++++++.. + .+++++.++|+.+. ++
T Consensus        85 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~  163 (258)
T 2pwy_A           85 ASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELE  163 (258)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCC
T ss_pred             HHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCC
Confidence            334444445567789999999999999999988544689999999999999999999987 7 47899999998765 22


Q ss_pred             HHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           86 QLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                              .++||+|+++..  ....+++.+.+.|+|||.+++..
T Consensus       164 --------~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          164 --------EAAYDGVALDLM--EPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             --------TTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             --------CCCcCEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence                    468999999753  34477889999999999998743

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.61  E-value=1.3e-14  Score=117.42  Aligned_cols=113  Identities=15%  Similarity=0.188  Sum_probs=89.0

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHH-------HHHHHHcCCC-CceEEEeCCchHH---
Q 029836           15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG-------LPIIQKAGVA-HKIDFREGPALPL---   83 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a-------~~~~~~~~~~-~~i~~~~~d~~~~---   83 (187)
                      +...++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.|       +++++..|+. .+++++++|....   
T Consensus       238 l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~  316 (433)
T 1u2z_A          238 CQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR  316 (433)
T ss_dssp             TTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH
T ss_pred             cCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccc
Confidence            3455678999999999999999998755 56899999999999988       8999888853 7899999765421   


Q ss_pred             HHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      ++..      .++||+|++...  ..+....+..+.+.|+|||.+++.+.+..
T Consensus       317 ~~~~------~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~p  363 (433)
T 1u2z_A          317 VAEL------IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRS  363 (433)
T ss_dssp             HHHH------GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred             cccc------cCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence            2222      358999998643  34566778899999999999999875543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.61  E-value=2.9e-15  Score=111.90  Aligned_cols=106  Identities=12%  Similarity=0.114  Sum_probs=86.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|+.+..+++..++.++|+++|+++++++.++++.++.   .++..+.++..+.... ..   ..++
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~-~~---~~~~  147 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKY-RH---LVEG  147 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGG-TT---TCCC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCcccc-cc---ccce
Confidence            346789999999999999999998877899999999999999998877654   5888888887653211 10   1578


Q ss_pred             eeEEEEcCC-CcccHHHHHHHHhcccCCeEEEEe
Q 029836           97 FDFVFVDAD-KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        97 ~D~v~~d~~-~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+||.|.. +.+...++.++.+.|||||.+++.
T Consensus       148 vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          148 VDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            999999876 445667899999999999999875

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.61  E-value=4.1e-15  Score=115.78  Aligned_cols=106  Identities=18%  Similarity=0.182  Sum_probs=85.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHH---cCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK---AGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~---~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      .++++|||||||+|..+..+++..+ ..+++++|+++.+++.+++++..   ....++++++.+|+.+++....     .
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~-----~  167 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTP-----D  167 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSC-----T
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhcc-----C
Confidence            5678999999999999999997643 68999999999999999998853   2223689999999987765311     4


Q ss_pred             CceeEEEEcCCCcc-------cHHHHHHHHhcccCCeEEEEe
Q 029836           95 GTFDFVFVDADKDN-------YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        95 ~~~D~v~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++||+|++|.....       ...+++.+.+.|+|||++++.
T Consensus       168 ~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  209 (304)
T 3bwc_A          168 NTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQ  209 (304)
T ss_dssp             TCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            68999999875211       168899999999999999985

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.61  E-value=1.1e-14  Score=124.59  Aligned_cols=113  Identities=19%  Similarity=0.334  Sum_probs=94.9

Q ss_pred             HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEEEeCCchHHHHHHhhc
Q 029836           12 SMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPLLDQLIQD   90 (187)
Q Consensus        12 ~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~   90 (187)
                      ..+....++++|||+|||+|..++.++...  ..+|++||+++.+++.+++|++.+++. .+++++++|+.++++..   
T Consensus       532 ~~l~~~~~g~~VLDlg~GtG~~sl~aa~~g--a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~---  606 (703)
T 3v97_A          532 RMLGQMSKGKDFLNLFSYTGSATVHAGLGG--ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA---  606 (703)
T ss_dssp             HHHHHHCTTCEEEEESCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC---
T ss_pred             HHHHHhcCCCcEEEeeechhHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc---
Confidence            334445678999999999999999988742  468999999999999999999999986 58999999999887764   


Q ss_pred             ccCCCceeEEEEcCCC--------------cccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           91 EKYHGTFDFVFVDADK--------------DNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                         .++||+|++|++.              ..+..++..+.++|+|||+|++....
T Consensus       607 ---~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          607 ---NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             ---CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ---CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence               5789999999862              23566788889999999999987654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.61  E-value=1.3e-14  Score=113.28  Aligned_cols=116  Identities=11%  Similarity=0.139  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            7 EAQFFSMLLKL---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         7 ~~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +...+..++..   .++.+|||||||+|..+..+++..  +.+|+++|+++.+++.+++++...++.+++++.++|..+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  152 (318)
T 2fk8_A           75 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF  152 (318)
T ss_dssp             HHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC
Confidence            44555565543   356799999999999999999875  4699999999999999999999988878899999998643


Q ss_pred             HHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                                .++||+|++...     ..+...+++.+.++|+|||.+++.+....
T Consensus       153 ----------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  198 (318)
T 2fk8_A          153 ----------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY  198 (318)
T ss_dssp             ----------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             ----------CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence                      358999998754     24668899999999999999999776543

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.60  E-value=2.4e-14  Score=122.44  Aligned_cols=161  Identities=10%  Similarity=0.111  Sum_probs=111.2

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc------CCCCceEEEeCCchHH
Q 029836           10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA------GVAHKIDFREGPALPL   83 (187)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~------~~~~~i~~~~~d~~~~   83 (187)
                      ++..++...++.+|||+|||+|..+..+++..++..+|+++|+++.+++.|++++...      +. .+++++++|+.+.
T Consensus       712 ~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dL  790 (950)
T 3htx_A          712 YALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEF  790 (950)
T ss_dssp             HHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSC
T ss_pred             HHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhC
Confidence            3344445567899999999999999999987644579999999999999999977643      33 5899999999764


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcc-----cHHHHHHHHhcccCCeEEEEeCcCCCcc--cc---------CC------C
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDN-----YVNYHKRLIELVKVGGVIGYDNTLWGGS--VV---------AP------P  141 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~~~--~~---------~~------~  141 (187)
                      ...       .++||+|++.....+     ...+++.+.+.|+|| ++++........  ..         .+      .
T Consensus       791 p~~-------d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~  862 (950)
T 3htx_A          791 DSR-------LHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPK  862 (950)
T ss_dssp             CTT-------SCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSS
T ss_pred             Ccc-------cCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhccccccccccccccccc
Confidence            221       578999998765222     235788999999999 776654322110  00         00      0


Q ss_pred             CCCchhhhhhHHHHHHHHHHHHhcCCCeeEEEeecCCe
Q 029836          142 DADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADG  179 (187)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~G  179 (187)
                      .....+...-.....+.+.+.+....++...+.++|+|
T Consensus       863 fRh~DHrFEWTReEFr~Wae~LAer~GYsVefvGVGDg  900 (950)
T 3htx_A          863 FRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSGVGGS  900 (950)
T ss_dssp             CSCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEEESSC
T ss_pred             ccccCcceeecHHHHHHHHHHHHHhcCcEEEEEccCCC
Confidence            00011111223445566666788888999999999887

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.60  E-value=5.6e-15  Score=118.41  Aligned_cols=106  Identities=23%  Similarity=0.367  Sum_probs=90.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++++|||+|||+|..+..++..   ..+|+++|+++.+++.|++|++.+++. +++++++|+.++++.+...   .++||
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~~~~~~~~---~~~fD  281 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKE---GERFD  281 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHHHHHHHhc---CCCee
Confidence            6779999999999999999986   478999999999999999999999984 4999999999887765322   45899


Q ss_pred             EEEEcCCC------------cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           99 FVFVDADK------------DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        99 ~v~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|++|++.            ..+..++..+.++|+|||++++...
T Consensus       282 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          282 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            99999863            3456788889999999999988643

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.60  E-value=2.4e-14  Score=110.16  Aligned_cols=102  Identities=16%  Similarity=0.118  Sum_probs=86.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++...+.  +++++++|..+...        .+
T Consensus       117 ~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--------~~  183 (286)
T 3m70_A          117 KIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI--------QE  183 (286)
T ss_dssp             HHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC--------CS
T ss_pred             hccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc--------cC
Confidence            4457899999999999999999986   46999999999999999999999876  89999999876432        46


Q ss_pred             ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +||+|++...     ......+++.+.++|+|||++++..
T Consensus       184 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          184 NYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             CEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            8999998764     3446689999999999999976643

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.60  E-value=1.3e-14  Score=115.55  Aligned_cols=163  Identities=18%  Similarity=0.162  Sum_probs=105.4

Q ss_pred             HHHHHHhh--cCCCEEEEEccc------ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836           10 FFSMLLKL--INAKNTMEIGVF------TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus        10 ~l~~l~~~--~~~~~vLeiG~g------~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      ++..++..  .++.+|||||||      +|..++.+++.+.++++|+++|+++.+..          ..++++++++|+.
T Consensus       205 ~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~----------~~~rI~fv~GDa~  274 (419)
T 3sso_A          205 HYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV----------DELRIRTIQGDQN  274 (419)
T ss_dssp             HHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG----------CBTTEEEEECCTT
T ss_pred             HHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh----------cCCCcEEEEeccc
Confidence            44444432  367899999999      66667777655323789999999999731          2368999999997


Q ss_pred             HH--HHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHhcccCCeEEEEeCcCCCccccC-CCCCCchhhhhhHHHHH
Q 029836           82 PL--LDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVA-PPDADLDEHFLYLRDFV  156 (187)
Q Consensus        82 ~~--l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  156 (187)
                      +.  ...+...   .++||+|+.+..+  .+....|+++.++|||||++++.|+.+...... ....+ ......+...+
T Consensus       275 dlpf~~~l~~~---d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~-~~~~~tii~~l  350 (419)
T 3sso_A          275 DAEFLDRIARR---YGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADP-QECSGTSLGLL  350 (419)
T ss_dssp             CHHHHHHHHHH---HCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSST-TCCTTSHHHHH
T ss_pred             ccchhhhhhcc---cCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccC-CcchhHHHHHH
Confidence            63  3222211   3689999998763  446788999999999999999999873211110 00000 01224566777


Q ss_pred             HHHHHHHhcC---------CCee---EEEeecCCeeEEEEEc
Q 029836          157 QELNKALAVD---------PRIE---ICQISIADGVTLCRRI  186 (187)
Q Consensus       157 ~~~~~~~~~~---------~~~~---~~~~p~~~G~~i~~k~  186 (187)
                      +++.+.+...         |.+.   ..-+.+=+++.+..|.
T Consensus       351 k~l~D~l~~~~~~~~~~~~~~~~~~~~~~~h~y~~i~~~~kg  392 (419)
T 3sso_A          351 KSLIDAIQHQELPSDPNRSPGYVDRNIVGLHVYHNVAFVEKG  392 (419)
T ss_dssp             HHHHHHHTGGGSCCCTTCCCCHHHHHEEEEEEETTEEEEEES
T ss_pred             HHHHHHhcccccCCCcCCCCCccccceeEEEecCcEEEEEec
Confidence            7776666532         1221   3445666777777664

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.60  E-value=3.3e-15  Score=116.52  Aligned_cols=108  Identities=11%  Similarity=0.140  Sum_probs=90.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++..  +.+|+++|+++.+++.|+++++..++.++++++++|+.+. + +     ..++|
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~f  186 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-P-F-----DKGAV  186 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-C-----CTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-C-C-----CCCCE
Confidence            446799999999999999999874  4789999999999999999999999888999999999753 1 1     14789


Q ss_pred             eEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           98 DFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        98 D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      |+|++...  .-+...+++.+.++|||||.+++.+....
T Consensus       187 D~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  225 (312)
T 3vc1_A          187 TASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWN  225 (312)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             eEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEcccc
Confidence            99998654  22478899999999999999998665443

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.60  E-value=3.3e-15  Score=119.43  Aligned_cols=103  Identities=13%  Similarity=0.074  Sum_probs=86.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC--ceEEEeCCchHHHHHHhhcccCCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH--KIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~--~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      .++.+|||+|||+|..+..+++..| +.+|+++|+++.+++.++++++.+++..  +++++.+|..+.++        .+
T Consensus       221 ~~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~--------~~  291 (375)
T 4dcm_A          221 NLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PF  291 (375)
T ss_dssp             SCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC--------TT
T ss_pred             cCCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC--------CC
Confidence            3457999999999999999999876 6899999999999999999999988753  58889999876432        46


Q ss_pred             ceeEEEEcCCC--------cccHHHHHHHHhcccCCeEEEEe
Q 029836           96 TFDFVFVDADK--------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        96 ~~D~v~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +||+|+++++.        .....+++.+.+.|+|||.+++.
T Consensus       292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv  333 (375)
T 4dcm_A          292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  333 (375)
T ss_dssp             CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            89999998651        12246889999999999999873

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.60  E-value=1.8e-15  Score=111.66  Aligned_cols=108  Identities=14%  Similarity=0.202  Sum_probs=86.0

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh
Q 029836           10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ   89 (187)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~   89 (187)
                      ++..++...++.+|||+|||+|..+..+++.   ..+++++|+++.+++.+++++...   .+++++++|..+..+    
T Consensus        42 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~----  111 (216)
T 3ofk_A           42 LLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRW---SHISWAATDILQFST----  111 (216)
T ss_dssp             HHHHHTTTSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTC---SSEEEEECCTTTCCC----
T ss_pred             HHHHHcccCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccC---CCeEEEEcchhhCCC----
Confidence            3443444455679999999999999999876   368999999999999999988664   489999999976542    


Q ss_pred             cccCCCceeEEEEcCCC------cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           90 DEKYHGTFDFVFVDADK------DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~~------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                          .++||+|++....      .....+++.+.++|+|||++++...
T Consensus       112 ----~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          112 ----AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             ----SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ----CCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence                5789999987541      2235679999999999999998653

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.60  E-value=2.8e-15  Score=112.13  Aligned_cols=105  Identities=17%  Similarity=0.134  Sum_probs=87.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++...+...+++++++|+.+..+        .++||
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~fD  134 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP--------TELFD  134 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC--------SSCEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC--------CCCee
Confidence            4569999999999999988752   679999999999999999999876665789999999976432        46899


Q ss_pred             EEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           99 FVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        99 ~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      +|++...     .+....+++.+.++|+|||++++......
T Consensus       135 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  175 (235)
T 3lcc_A          135 LIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPIT  175 (235)
T ss_dssp             EEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCS
T ss_pred             EEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccc
Confidence            9997654     23667899999999999999998665443

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.60  E-value=3.7e-15  Score=111.81  Aligned_cols=108  Identities=14%  Similarity=0.136  Sum_probs=87.1

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      .++..+....++.+|||||||+|..+..+++..   .+++++|+++.+++.|+++...     +++++++|+.+..+   
T Consensus        32 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~~---  100 (250)
T 2p7i_A           32 FMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQL---  100 (250)
T ss_dssp             HHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCC---
T ss_pred             HHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcCc---
Confidence            344455455678899999999999999998763   4799999999999999887632     79999999976621   


Q ss_pred             hcccCCCceeEEEEcCC---CcccHHHHHHHH-hcccCCeEEEEeCcC
Q 029836           89 QDEKYHGTFDFVFVDAD---KDNYVNYHKRLI-ELVKVGGVIGYDNTL  132 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~-~~L~~gG~lv~~~~~  132 (187)
                           +++||+|++...   ..+...+++++. ++|||||.+++....
T Consensus       101 -----~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~  143 (250)
T 2p7i_A          101 -----PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN  143 (250)
T ss_dssp             -----SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             -----CCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence                 578999998765   345678999999 999999999986643

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.60  E-value=6.9e-15  Score=111.03  Aligned_cols=105  Identities=19%  Similarity=0.208  Sum_probs=85.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc--------CCCCceEEEeCCchHHHHHHhhc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA--------GVAHKIDFREGPALPLLDQLIQD   90 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~--------~~~~~i~~~~~d~~~~l~~~~~~   90 (187)
                      ++.+|||||||+|..+..++...+ ..+++++|+++.+++.++++++..        ++ .+++++++|+.+.++...  
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~--  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFF--  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTS--
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhc--
Confidence            567899999999999999999876 679999999999999999998876        66 589999999987555432  


Q ss_pred             ccCCCceeEEEEcCCCc-----------ccHHHHHHHHhcccCCeEEEEe
Q 029836           91 EKYHGTFDFVFVDADKD-----------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                        ..+++|.|++..+..           ....+++.+.++|+|||++++.
T Consensus       125 --~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          125 --EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             --CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             --cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence              146899998654311           1258999999999999999873

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.60  E-value=1.2e-14  Score=116.79  Aligned_cols=105  Identities=22%  Similarity=0.326  Sum_probs=86.5

Q ss_pred             hhcC-CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           16 KLIN-AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        16 ~~~~-~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ...+ +++|||+|||+|..++.++..   +.+|+++|+++.+++.+++|++.+++..  ++.++|+.++++..      .
T Consensus       210 ~~~~~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~------~  278 (393)
T 4dmg_A          210 AMVRPGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGL------E  278 (393)
T ss_dssp             TTCCTTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTC------C
T ss_pred             HHhcCCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHh------c
Confidence            3344 789999999999999999985   3459999999999999999999998854  46699998887654      3


Q ss_pred             CceeEEEEcCCC------------cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           95 GTFDFVFVDADK------------DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        95 ~~~D~v~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +.||+|++|++.            ..+..++..+.++|+|||+|++..+
T Consensus       279 ~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          279 GPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             CCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            459999999863            2456788888999999999985443

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.60  E-value=2.3e-15  Score=115.44  Aligned_cols=106  Identities=14%  Similarity=0.223  Sum_probs=87.6

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc-CCCCceEEEeCCchHHHHHHhhccc
Q 029836           14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA-GVAHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      .+...++.+|||+|||+|..+..+++.+.++.+++++|+++.+++.++++++.. +. +++++.++|+.+.++       
T Consensus       105 ~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~-------  176 (275)
T 1yb2_A          105 RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFIS-------  176 (275)
T ss_dssp             -CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCC-------
T ss_pred             HcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCc-------
Confidence            334456789999999999999999987433689999999999999999999987 74 689999999976332       


Q ss_pred             CCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                       .++||+|+++..  +...+++.+.+.|+|||.+++..
T Consensus       177 -~~~fD~Vi~~~~--~~~~~l~~~~~~LkpgG~l~i~~  211 (275)
T 1yb2_A          177 -DQMYDAVIADIP--DPWNHVQKIASMMKPGSVATFYL  211 (275)
T ss_dssp             -SCCEEEEEECCS--CGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             -CCCccEEEEcCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence             468999999653  44578899999999999999754

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.60  E-value=5.4e-15  Score=110.11  Aligned_cols=103  Identities=17%  Similarity=0.187  Sum_probs=84.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH--HHHhhcccCCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL--DQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l--~~~~~~~~~~~   95 (187)
                      .++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.++++.+..   ++++++++|+.+..  ...      .+
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~------~~  142 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRAL------VP  142 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTT------CC
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcc------cC
Confidence            35679999999999999999987654689999999999999999888654   68999999987632  112      45


Q ss_pred             ceeEEEEcCCCcccH-HHHHHHHhcccCCeEEEEe
Q 029836           96 TFDFVFVDADKDNYV-NYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~  129 (187)
                      +||+|+++....... .++..+.+.|+|||.+++.
T Consensus       143 ~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          143 KVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            899999987644443 4489999999999999986

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.60  E-value=5.2e-15  Score=111.10  Aligned_cols=113  Identities=11%  Similarity=0.138  Sum_probs=91.8

Q ss_pred             HHHHHHhhcC-CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836           10 FFSMLLKLIN-AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus        10 ~l~~l~~~~~-~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      -|+.++...+ +.+|||||||+|++++.+++..+ ..+|+++|+++.+++.|++|++.+++.++++++++|..+.+..  
T Consensus        11 RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~--   87 (244)
T 3gnl_A           11 RLEKVASYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK--   87 (244)
T ss_dssp             HHHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--
T ss_pred             HHHHHHHhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc--
Confidence            3555555554 46999999999999999998754 5789999999999999999999999988899999999876531  


Q ss_pred             hcccCCCceeEEEEcCC-CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           89 QDEKYHGTFDFVFVDAD-KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~-~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                           .++||+|++.+. ..-...+++...+.|++++.+|+..
T Consensus        88 -----~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~  125 (244)
T 3gnl_A           88 -----KDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQP  125 (244)
T ss_dssp             -----GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred             -----cccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEc
Confidence                 235999886442 4456778888889999999999754

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.60  E-value=1.1e-14  Score=109.53  Aligned_cols=113  Identities=19%  Similarity=0.328  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      +.....+...+...++.+|||+|||+|..+..+++.   ..+++++|+++++++.|+++++..++.+++++.++|..+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  153 (248)
T 2yvl_A           77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE  153 (248)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC
T ss_pred             chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc
Confidence            444445555555567789999999999999999987   57999999999999999999999888778999999987643


Q ss_pred             -HHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           85 -DQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        85 -~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                       +        .++||+|+.+..  ....+++.+.+.|+|||.+++..
T Consensus       154 ~~--------~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          154 VP--------EGIFHAAFVDVR--EPWHYLEKVHKSLMEGAPVGFLL  190 (248)
T ss_dssp             CC--------TTCBSEEEECSS--CGGGGHHHHHHHBCTTCEEEEEE
T ss_pred             cC--------CCcccEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence             2        458999999754  44567888999999999998743

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.59  E-value=6.6e-15  Score=112.87  Aligned_cols=103  Identities=14%  Similarity=0.117  Sum_probs=88.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++++|||+|||+|..++.+++..  ..+|+++|++|.+++.+++|++.+++.++++++++|+.++.+        .+.|
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~--------~~~~  193 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIA  193 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc--------ccCC
Confidence            457899999999999999999762  479999999999999999999999999999999999987653        5689


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |.|+++.+.. ...+++.+.++|++||+|.++..
T Consensus       194 D~Vi~~~p~~-~~~~l~~a~~~lk~gG~ih~~~~  226 (278)
T 3k6r_A          194 DRILMGYVVR-THEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             EEEEECCCSS-GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CEEEECCCCc-HHHHHHHHHHHcCCCCEEEEEee
Confidence            9999987533 34678888899999999987543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.59  E-value=1.3e-14  Score=107.19  Aligned_cols=102  Identities=16%  Similarity=0.159  Sum_probs=79.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH--HHhhcccCCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD--QLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~--~~~~~~~~~~   95 (187)
                      .++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+.+..+..   .++.++.+|+.+...  .+      .+
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~------~~  125 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGI------VE  125 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTT------CC
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhccc------cc
Confidence            3567999999999999999998876 689999999999887666655543   478888888865311  11      46


Q ss_pred             ceeEEEEcCCCcc-cHHHHHHHHhcccCCeEEEEe
Q 029836           96 TFDFVFVDADKDN-YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        96 ~~D~v~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +||+|+++..... ...+++++.+.|||||.+++.
T Consensus       126 ~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          126 KVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            8999999865333 334589999999999999986

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.59  E-value=1.2e-14  Score=108.07  Aligned_cols=103  Identities=18%  Similarity=0.264  Sum_probs=83.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC----CCceEEEeCCchHHHHHHhhccc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV----AHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      ..++.+|||+|||+|..+..+++.+++..+|+++|+++.+++.+++++...+.    ..++++.++|.......      
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------  148 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE------  148 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc------
Confidence            44678999999999999999998764457999999999999999999988664    36899999998643221      


Q ss_pred             CCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       .++||+|+++......   ++.+.+.|+|||.+++.
T Consensus       149 -~~~fD~i~~~~~~~~~---~~~~~~~LkpgG~lv~~  181 (226)
T 1i1n_A          149 -EAPYDAIHVGAAAPVV---PQALIDQLKPGGRLILP  181 (226)
T ss_dssp             -GCCEEEEEECSBBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             -CCCcCEEEECCchHHH---HHHHHHhcCCCcEEEEE
Confidence             4589999998764333   45778999999999985

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.59  E-value=1e-14  Score=115.75  Aligned_cols=118  Identities=16%  Similarity=0.153  Sum_probs=95.4

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .+.....+-.++...++.+|||+|||+|..+++++...++..+++++|+++.+++.|++|++..++. ++++.++|+.++
T Consensus       188 ~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~  266 (354)
T 3tma_A          188 TPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHL  266 (354)
T ss_dssp             CHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGG
T ss_pred             CHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhC
Confidence            4445555555556667789999999999999999987623689999999999999999999999986 999999999875


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCc-----------ccHHHHHHHHhcccCCeEEEEe
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKD-----------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...       .+.||+|++|++..           .+..+++.+.++|+|||.+++.
T Consensus       267 ~~~-------~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  316 (354)
T 3tma_A          267 PRF-------FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL  316 (354)
T ss_dssp             GGT-------CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             ccc-------cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            332       35689999987621           1367888899999999999874

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.59  E-value=1.9e-14  Score=108.59  Aligned_cols=109  Identities=21%  Similarity=0.307  Sum_probs=87.5

Q ss_pred             HHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            8 AQFFSMLLKL---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         8 ~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      ..++..++..   .++.+|||+|||+|..+..+++.   +.+++++|+++.+++.++++....+.  +++++++|..+..
T Consensus        27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~  101 (252)
T 1wzn_A           27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA  101 (252)
T ss_dssp             HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC
T ss_pred             HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcc
Confidence            4555555544   34579999999999999999875   57999999999999999999988765  7999999997642


Q ss_pred             HHHhhcccCCCceeEEEEcCC------CcccHHHHHHHHhcccCCeEEEEe
Q 029836           85 DQLIQDEKYHGTFDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .        .++||+|++...      ......+++.+.+.|+|||+++++
T Consensus       102 ~--------~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          102 F--------KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             C--------CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             c--------CCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            1        468999997532      134567889999999999999975

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.59  E-value=2.3e-15  Score=113.14  Aligned_cols=116  Identities=11%  Similarity=0.182  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhhc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            7 EAQFFSMLLKLI----NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         7 ~~~~l~~l~~~~----~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      ...++..++...    ++.+|||||||+|..+..+++..  ..+++++|+++.+++.+++++...+ ..+++++++|..+
T Consensus        63 ~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~  139 (241)
T 2ex4_A           63 SRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQD  139 (241)
T ss_dssp             HHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGG
T ss_pred             HHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhh
Confidence            445556555433    47899999999999999988764  4699999999999999999987764 2578999999865


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ...       ..++||+|++....     .....+++.+.++|+|||++++.+..
T Consensus       140 ~~~-------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          140 FTP-------EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             CCC-------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cCC-------CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            421       04589999988652     12457899999999999999986543

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.59  E-value=1.1e-14  Score=109.01  Aligned_cols=113  Identities=19%  Similarity=0.286  Sum_probs=89.1

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .+.....+..++...++.+|||+|||+|..+..+++..+  .+++++|+++.+++.++++++..+. .++++..+|....
T Consensus        76 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~  152 (235)
T 1jg1_A           76 APHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKG  152 (235)
T ss_dssp             CHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGC
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEECCcccC
Confidence            445555555556666778999999999999999998764  7899999999999999999999887 4699999997433


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++.       ..+||+|+++.......   +.+.+.|+|||.+++.
T Consensus       153 ~~~-------~~~fD~Ii~~~~~~~~~---~~~~~~L~pgG~lvi~  188 (235)
T 1jg1_A          153 FPP-------KAPYDVIIVTAGAPKIP---EPLIEQLKIGGKLIIP  188 (235)
T ss_dssp             CGG-------GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             CCC-------CCCccEEEECCcHHHHH---HHHHHhcCCCcEEEEE
Confidence            321       24699999987644333   3678899999999874

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.59  E-value=1.1e-14  Score=108.91  Aligned_cols=103  Identities=15%  Similarity=0.149  Sum_probs=82.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~   95 (187)
                      .+..+|||+|||+|..+..+++..++..+|+++|+++.+++.+.++.+..   .+++++++|+.+.  ++..      .+
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~------~~  146 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRML------IA  146 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGG------CC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhccc------CC
Confidence            35679999999999999999988644689999999999888888777765   5899999999763  2222      56


Q ss_pred             ceeEEEEcCCC-cccHHHHHHHHhcccCCeEEEEe
Q 029836           96 TFDFVFVDADK-DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        96 ~~D~v~~d~~~-~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +||+|+++... .....++..+.+.|+|||++++.
T Consensus       147 ~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          147 MVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             CEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEE
Confidence            89999998763 23345678899999999999983

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.58  E-value=4.9e-15  Score=110.73  Aligned_cols=104  Identities=14%  Similarity=0.041  Sum_probs=83.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.++++.+..   ++++++.+|+.+...... .   .++|
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~-~---~~~~  144 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYAN-I---VEKV  144 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTT-T---SCCE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccc-c---CccE
Confidence            3567999999999999999999876 689999999999999999887654   689999999875211010 0   3589


Q ss_pred             eEEEEcCC-CcccHHHHHHHHhcccCCeEEEEe
Q 029836           98 DFVFVDAD-KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        98 D~v~~d~~-~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|+.+.. +.....+++.+.+.|+|||.+++.
T Consensus       145 D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            99997754 333467799999999999999985

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.58  E-value=1.1e-14  Score=111.65  Aligned_cols=117  Identities=16%  Similarity=0.159  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc-C-CCCceEEEeCCchH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA-G-VAHKIDFREGPALP   82 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~-~-~~~~i~~~~~d~~~   82 (187)
                      +.....+...+...++.+|||+|||+|..+..+++.+.+..+++++|+++.+++.|+++++.. + +.+++++.++|+.+
T Consensus        85 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~  164 (280)
T 1i9g_A           85 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  164 (280)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence            434444444445567789999999999999999986544689999999999999999999887 5 45789999999876


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..  +     ..++||+|+++..  +...+++.+.+.|+|||.+++..
T Consensus       165 ~~--~-----~~~~~D~v~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          165 SE--L-----PDGSVDRAVLDML--APWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             CC--C-----CTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cC--C-----CCCceeEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence            41  1     0468999999764  34477889999999999998743

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.58  E-value=6.8e-15  Score=117.93  Aligned_cols=117  Identities=15%  Similarity=0.276  Sum_probs=91.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc-----C-C-CCceEEEeCCchHHHHHHhh
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA-----G-V-AHKIDFREGPALPLLDQLIQ   89 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~-----~-~-~~~i~~~~~d~~~~l~~~~~   89 (187)
                      ..++.+|||+|||+|..+..+++.+++..+|+++|+++.+++.++++++..     | . .++++++++|+.+.... ..
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~-~~  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA-EP  159 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC-BS
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc-cc
Confidence            346789999999999999999988754689999999999999999998765     3 2 26899999999764210 00


Q ss_pred             cccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           90 DEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      .....++||+|++...   ..+...+++.+.++|||||++++.+....
T Consensus       160 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  207 (383)
T 4fsd_A          160 EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYAD  207 (383)
T ss_dssp             CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccc
Confidence            0001468999998865   34578899999999999999999776543

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.58  E-value=3.6e-14  Score=109.34  Aligned_cols=118  Identities=15%  Similarity=0.132  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC---CceEEEeCCchH
Q 029836            6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA---HKIDFREGPALP   82 (187)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~---~~i~~~~~d~~~   82 (187)
                      ....++..++...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|+++....+..   .++.+..+|..+
T Consensus        44 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~  120 (293)
T 3thr_A           44 EYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  120 (293)
T ss_dssp             HHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             HHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence            34556666666678899999999999999999986   459999999999999999887554432   468889999876


Q ss_pred             HHHHHhhcccCCCceeEEEEcC-C---Ccc-------cHHHHHHHHhcccCCeEEEEeC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDA-D---KDN-------YVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~-~---~~~-------~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ....+.    ..++||+|++.+ .   ..+       ...+++.+.++|+|||++++..
T Consensus       121 ~~~~~~----~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          121 LDKDVP----AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             HHHHSC----CTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Cccccc----cCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            542221    157899999862 2   233       6789999999999999999864

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.58  E-value=3.7e-14  Score=113.40  Aligned_cols=112  Identities=14%  Similarity=0.076  Sum_probs=87.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHH-------HHcCC-CCceEEEeCCchHHH-HH
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPII-------QKAGV-AHKIDFREGPALPLL-DQ   86 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~-------~~~~~-~~~i~~~~~d~~~~l-~~   86 (187)
                      ...+..+|||+|||+|..++.++...+ ..+++|||+++.+++.|+++.       +..|+ ..+++|+++|+.+.. +.
T Consensus       170 ~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d  248 (438)
T 3uwp_A          170 KMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE  248 (438)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc
Confidence            455678999999999999999997765 467999999999999998765       34455 368999999997642 11


Q ss_pred             HhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           87 LIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      .      ...+|+||+...  ..+....+.++.+.|||||.||+.+.+..
T Consensus       249 ~------~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p  292 (438)
T 3uwp_A          249 R------IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAP  292 (438)
T ss_dssp             H------HHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred             c------cCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence            1      147999998754  34566777888899999999999876554

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.57  E-value=2.8e-14  Score=108.98  Aligned_cols=111  Identities=12%  Similarity=0.091  Sum_probs=86.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch------HHHHHHHHHHHcCCCCceEEEeCC-chH-HHHHHh
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE------HYEKGLPIIQKAGVAHKIDFREGP-ALP-LLDQLI   88 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~------~~~~a~~~~~~~~~~~~i~~~~~d-~~~-~l~~~~   88 (187)
                      ..++.+|||||||+|..+..+++..++..+++++|+++.      +++.++++++..++.+++++.++| ... .++ +.
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~  119 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP-IA  119 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGG-GT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCC-CC
Confidence            346789999999999999999987643589999999997      999999999988877789999998 321 111 11


Q ss_pred             hcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           89 QDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                           .++||+|++...   ..+...+++.+..++++||.+++.+...
T Consensus       120 -----~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          120 -----DQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             -----TCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             -----CCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence                 468999998765   2334456677777777899999977654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.57  E-value=1.8e-14  Score=115.32  Aligned_cols=114  Identities=12%  Similarity=0.142  Sum_probs=93.4

Q ss_pred             CHHHHHHHHHHHhhc-----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC
Q 029836            4 SPDEAQFFSMLLKLI-----NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG   78 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~-----~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~   78 (187)
                      .+....++..+....     ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++++.++.  +++++++
T Consensus       213 d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~  287 (381)
T 3dmg_A          213 DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANAL--KAQALHS  287 (381)
T ss_dssp             CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTC--CCEEEEC
T ss_pred             CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEc
Confidence            456666777776543     5679999999999999999986   46999999999999999999999886  4899999


Q ss_pred             CchHHHHHHhhcccCCCceeEEEEcCCC--------cccHHHHHHHHhcccCCeEEEEe
Q 029836           79 PALPLLDQLIQDEKYHGTFDFVFVDADK--------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        79 d~~~~l~~~~~~~~~~~~~D~v~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |..+....       .++||+|+++.+.        .....+++.+.+.|+|||.+++.
T Consensus       288 D~~~~~~~-------~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv  339 (381)
T 3dmg_A          288 DVDEALTE-------EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV  339 (381)
T ss_dssp             STTTTSCT-------TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhhcccc-------CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence            99765431       3689999998651        23467889999999999999874

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.57  E-value=1.8e-14  Score=105.24  Aligned_cols=110  Identities=13%  Similarity=-0.008  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      ...++..+.... +.+|||+|||+|..+..++..   +.+++++|+++.+++.++++.      ++++++++|+.+. + 
T Consensus        30 ~~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-   97 (203)
T 3h2b_A           30 DRVLIEPWATGV-DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDL-S-   97 (203)
T ss_dssp             THHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGG-G-
T ss_pred             HHHHHHHHhccC-CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCccccc-c-
Confidence            345666665544 889999999999999999876   468999999999999998863      5799999999764 2 


Q ss_pred             HhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           87 LIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ..     .++||+|++...     .++...+++.+.+.|+|||.+++.....
T Consensus        98 ~~-----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  144 (203)
T 3h2b_A           98 DS-----PKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSG  144 (203)
T ss_dssp             GS-----CCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred             cC-----CCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence            11     578999998654     2467889999999999999999876543

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.57  E-value=1.4e-14  Score=111.33  Aligned_cols=108  Identities=15%  Similarity=0.104  Sum_probs=90.5

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC----CCCceEEEeCCchHHHHHHhhc
Q 029836           15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG----VAHKIDFREGPALPLLDQLIQD   90 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~----~~~~i~~~~~d~~~~l~~~~~~   90 (187)
                      +...+|++||-||.|.|..+.++++..+ ..+++.||+++..++.+++.+....    ..+|++++.+|+..++...   
T Consensus        79 ~~~p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~---  154 (294)
T 3o4f_A           79 LAHGHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT---  154 (294)
T ss_dssp             HHSSCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS---
T ss_pred             hhCCCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc---
Confidence            3456899999999999999999998744 6899999999999999999986531    1379999999999888653   


Q ss_pred             ccCCCceeEEEEcCCC-------cccHHHHHHHHhcccCCeEEEEe
Q 029836           91 EKYHGTFDFVFVDADK-------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                         .++||+|++|...       -...++++.+.+.|+|||+++..
T Consensus       155 ---~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          155 ---SQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             ---SCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             ---cccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence               6789999999751       12468999999999999999963

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.57  E-value=1.4e-14  Score=115.84  Aligned_cols=106  Identities=14%  Similarity=0.180  Sum_probs=88.1

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++++|||+|||+|..+..+++. + ..+|+++|++ .+++.|+++++.+++.++++++++|+.+...        .+
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~  128 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL--------PE  128 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHT-T-CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC--------SS
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhc-C-CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc--------CC
Confidence            3456789999999999999999986 2 3599999999 9999999999999998889999999976521        36


Q ss_pred             ceeEEEEcCC------CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           96 TFDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        96 ~~D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +||+|+++..      ......++..+.++|+|||+++++...
T Consensus       129 ~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          129 KVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             CEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             cceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            8999999652      134566888888999999999876553

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.57  E-value=2.7e-14  Score=113.14  Aligned_cols=105  Identities=15%  Similarity=0.176  Sum_probs=87.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++++|||+|||+|..+..+++. + ..+|+++|++ ++++.|+++++..++.++++++++|+.+..  +.     .+
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-----~~  132 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVE--LP-----VE  132 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCC--CS-----SS
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHcc--CC-----CC
Confidence            4567899999999999999999986 3 5799999999 599999999999999888999999997651  10     47


Q ss_pred             ceeEEEEcCC------CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           96 TFDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        96 ~~D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +||+|++...      ......++..+.++|||||+++.+.
T Consensus       133 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  173 (349)
T 3q7e_A          133 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR  173 (349)
T ss_dssp             CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             ceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcccc
Confidence            8999998642      3456778888899999999998543

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.57  E-value=1.1e-14  Score=107.22  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=86.9

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      .++..+....++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++    .+. .+++++++|+.+..+   
T Consensus        36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~~---  104 (218)
T 3ou2_A           36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWTP---  104 (218)
T ss_dssp             HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCCC---
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCCC---
Confidence            34444444556689999999999999999987   4799999999999999887    343 689999999976621   


Q ss_pred             hcccCCCceeEEEEcCCC---cc--cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           89 QDEKYHGTFDFVFVDADK---DN--YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~~---~~--~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                           .++||+|++....   .+  ...+++.+.+.|+|||.+++.+...
T Consensus       105 -----~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          105 -----DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             -----SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             -----CCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence                 6799999987652   11  3778999999999999999876543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.57  E-value=1.3e-14  Score=106.33  Aligned_cols=118  Identities=14%  Similarity=0.184  Sum_probs=91.6

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .....+++..+....++.+|||+|||+|..+..++...  +.+++++|+++.+++.+++++...+  .++++.++|+.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~   83 (209)
T 2p8j_A            8 QPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKL   83 (209)
T ss_dssp             CTHHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSC
T ss_pred             hhhHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhC
Confidence            34455677776666778899999999999865555442  5799999999999999999988766  4788999998653


Q ss_pred             HHHHhhcccCCCceeEEEEcCC---C--cccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDAD---K--DNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~---~--~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                       + .     ..++||+|++...   .  .+...+++.+.+.|+|||++++....
T Consensus        84 -~-~-----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           84 -P-F-----KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             -C-S-----CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -C-C-----CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence             1 1     0468999998654   1  45677889999999999999987654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.56  E-value=6e-15  Score=112.19  Aligned_cols=105  Identities=15%  Similarity=0.194  Sum_probs=82.1

Q ss_pred             HHHHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836            9 QFFSMLLKLI-NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus         9 ~~l~~l~~~~-~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      +++..|.... ...+|||||||+|..+..++..   ..+|+++|+++.+++.|++       .++++++++++++. + +
T Consensus        28 ~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~-~-~   95 (257)
T 4hg2_A           28 ALFRWLGEVAPARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDT-G-L   95 (257)
T ss_dssp             HHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCC-C-C
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhh-c-c
Confidence            3555555544 3469999999999999999875   4689999999999887653       26899999999764 1 1


Q ss_pred             hhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           88 IQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                           .+++||+|++...  .-+...++.++.++|||||+|++-.
T Consensus        96 -----~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A           96 -----PPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             -----CSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -----cCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEE
Confidence                 1679999998654  3456789999999999999998754

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.56  E-value=2.7e-14  Score=106.46  Aligned_cols=111  Identities=20%  Similarity=0.252  Sum_probs=87.1

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .+.....+..++...++.+|||+|||+|..+..+++..   .+++++|+++.+++.+++++...+   +++++++|..+.
T Consensus        55 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~  128 (231)
T 1vbf_A           55 ALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLG  128 (231)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGC
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccc
Confidence            34444455555555677899999999999999999873   799999999999999999987765   899999999763


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ++.       .++||+|+++.......   +.+.+.|+|||.+++..
T Consensus       129 ~~~-------~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          129 YEE-------EKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             CGG-------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEE
T ss_pred             ccc-------CCCccEEEECCcHHHHH---HHHHHHcCCCcEEEEEE
Confidence            331       46899999987644332   46788999999998863

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.56  E-value=1.7e-14  Score=105.31  Aligned_cols=113  Identities=14%  Similarity=0.082  Sum_probs=88.8

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh
Q 029836           10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ   89 (187)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~   89 (187)
                      ++..++...++.+|||+|||+|..+..+++.   +.+++++|+++.+++.++++++..+.  ++++.++|..+..  +. 
T Consensus        20 ~l~~~~~~~~~~~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~-   91 (202)
T 2kw5_A           20 FLVSVANQIPQGKILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFD--IV-   91 (202)
T ss_dssp             SHHHHHHHSCSSEEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBS--CC-
T ss_pred             HHHHHHHhCCCCCEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcC--CC-
Confidence            3444555444449999999999999998875   46999999999999999999988765  7999999886541  10 


Q ss_pred             cccCCCceeEEEEcCCC---cccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           90 DEKYHGTFDFVFVDADK---DNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                          .++||+|++....   .....+++.+.++|+|||.+++......
T Consensus        92 ----~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  135 (202)
T 2kw5_A           92 ----ADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE  135 (202)
T ss_dssp             ----TTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred             ----cCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence                4689999985432   3457789999999999999999765443

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.56  E-value=3.6e-14  Score=106.15  Aligned_cols=106  Identities=14%  Similarity=0.104  Sum_probs=79.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..+++..++.++|+++|+++.+++...+..++.   .++.++++|+....... .   ..++
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~-~---~~~~  146 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYK-S---VVEN  146 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTT-T---TCCC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhh-c---cccc
Confidence            345689999999999999999987766789999999999876554444432   58999999986532100 0   0468


Q ss_pred             eeEEEEcCCCcccHHHH-HHHHhcccCCeEEEEe
Q 029836           97 FDFVFVDADKDNYVNYH-KRLIELVKVGGVIGYD  129 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~-~~~~~~L~~gG~lv~~  129 (187)
                      ||+|++|.........+ ..+.+.|||||.+++.
T Consensus       147 ~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          147 VDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence            99999998755555544 4555699999999975

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.56  E-value=2.7e-15  Score=114.38  Aligned_cols=97  Identities=9%  Similarity=-0.000  Sum_probs=80.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc--CC-CCceEEEeCCchHHHHHHhhcccCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA--GV-AHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      .++++|||||||+|..+.++++. +  .+++++|+++.+++.|++++...  +. .++++++.+|+.+++          
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence            46789999999999999999887 4  79999999999999999877431  11 368999999997653          


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++||+|++|...  ...+++.+.+.|+|||++++.
T Consensus       138 ~~fD~Ii~d~~d--p~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          138 KKYDLIFCLQEP--DIHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             CCEEEEEESSCC--CHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhCCEEEECCCC--hHHHHHHHHHhcCCCcEEEEE
Confidence            379999999642  345899999999999999984

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.55  E-value=3.5e-14  Score=106.37  Aligned_cols=110  Identities=17%  Similarity=0.144  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            7 EAQFFSMLLKLI--NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         7 ~~~~l~~l~~~~--~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      ..+++..++...  ++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++...+.  +++++++|..+..
T Consensus        23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~   97 (246)
T 1y8c_A           23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN   97 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCC
Confidence            344455555443  6789999999999999999876   46899999999999999999988765  7899999987542


Q ss_pred             HHHhhcccCCCceeEEEEcC-C---C---cccHHHHHHHHhcccCCeEEEEe
Q 029836           85 DQLIQDEKYHGTFDFVFVDA-D---K---DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~-~---~---~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .        .++||+|++.. .   .   .+...+++.+.++|+|||+++++
T Consensus        98 ~--------~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           98 I--------NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             C--------SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             c--------cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            1        36899999876 3   1   45677899999999999999984

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.55  E-value=9.7e-14  Score=110.90  Aligned_cols=106  Identities=21%  Similarity=0.277  Sum_probs=90.4

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc---------------CCCCceEEEeCCc
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA---------------GVAHKIDFREGPA   80 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~---------------~~~~~i~~~~~d~   80 (187)
                      ...++.+|||+|||+|..++.+++..+ ..+|+++|+++.+++.+++|++.+               ++. +++++++|+
T Consensus        44 ~~~~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da  121 (378)
T 2dul_A           44 NILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDA  121 (378)
T ss_dssp             HHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCH
T ss_pred             HHcCCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcH
Confidence            334788999999999999999998865 578999999999999999999998               773 499999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .+++...      .++||+|++|+. .....+++.+.+.|++||++++..
T Consensus       122 ~~~~~~~------~~~fD~I~lDP~-~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          122 NRLMAER------HRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHHHS------TTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHhc------cCCCCEEEeCCC-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            8877654      457999999874 344788999999999999988753

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.54  E-value=3.5e-14  Score=113.69  Aligned_cols=105  Identities=16%  Similarity=0.119  Sum_probs=90.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCc-eEEEeCCchHHHH-HHhhcccCCCc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK-IDFREGPALPLLD-QLIQDEKYHGT   96 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~l~-~~~~~~~~~~~   96 (187)
                      ++.+|||++||+|..++.++...+...+|+++|+++.+++.+++|++.+++.++ ++++++|+.+++. ..      .++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~------~~~  125 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW------GFG  125 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC------SSC
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh------CCC
Confidence            467999999999999999998754236899999999999999999999999766 9999999988876 54      468


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ||+|++|+ ......+++.+.++|++||+|++.-
T Consensus       126 fD~V~lDP-~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          126 FDYVDLDP-FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcEEEECC-CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            99999998 3444678999999999999888754

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.54  E-value=2.1e-14  Score=107.02  Aligned_cols=103  Identities=16%  Similarity=0.204  Sum_probs=82.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCchHHHHHHHHHHHcCC----CCceEEEeCCchHHHHHH
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPD-----DGKILALDITKEHYEKGLPIIQKAGV----AHKIDFREGPALPLLDQL   87 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~-----~~~v~~vd~~~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~l~~~   87 (187)
                      ..+..+|||||||+|..+..+++..+.     .++|+++|+++.+++.+++++...+.    ..+++++++|..+.++. 
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-  160 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-  160 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-
Confidence            445679999999999999999986541     25999999999999999999987651    25899999998764331 


Q ss_pred             hhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           88 IQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                            .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       161 ------~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          161 ------NAPYNAIHVGAAAPDT---PTELINQLASGGRLIVP  193 (227)
T ss_dssp             ------GCSEEEEEECSCBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             ------CCCccEEEECCchHHH---HHHHHHHhcCCCEEEEE
Confidence                  2689999998764433   36778899999999874

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.54  E-value=6e-14  Score=110.79  Aligned_cols=103  Identities=17%  Similarity=0.168  Sum_probs=85.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++++|||||||+|..+..+++. + ..+|+++|+++ +++.|+++++.+++.++++++++|+.+..  +     ..+
T Consensus        61 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-----~~~  130 (340)
T 2fyt_A           61 HIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH--L-----PVE  130 (340)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC--C-----SCS
T ss_pred             hhcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc--C-----CCC
Confidence            3467789999999999999999886 3 46999999996 99999999999998889999999997641  1     046


Q ss_pred             ceeEEEEcCC------CcccHHHHHHHHhcccCCeEEEE
Q 029836           96 TFDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        96 ~~D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +||+|++...      ......++..+.++|+|||.++.
T Consensus       131 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip  169 (340)
T 2fyt_A          131 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  169 (340)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             cEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence            8999998752      23356688888999999999983

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.54  E-value=6e-14  Score=111.12  Aligned_cols=102  Identities=14%  Similarity=0.156  Sum_probs=85.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++++|||||||+|..+..+++. + ..+|+++|+++ +++.|+++++.+++.++++++++|..+..  +      .++
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~------~~~  116 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--L------PEQ  116 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--C------SSC
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC--C------CCc
Confidence            357789999999999999998875 3 47999999996 88999999999998889999999987641  1      468


Q ss_pred             eeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe
Q 029836           97 FDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        97 ~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ||+|++...     .+.....+..+.++|+|||.+++.
T Consensus       117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          117 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             EEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             eeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            999998754     345677888889999999999853

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.54  E-value=1.1e-13  Score=108.69  Aligned_cols=107  Identities=17%  Similarity=0.167  Sum_probs=86.9

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhccc
Q 029836           13 MLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      ......++++|||+|||+|..+..+++. + ..+|+++|++ .+++.|+++++.+++.++++++++|+.+..  +.    
T Consensus        32 ~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~----  102 (328)
T 1g6q_1           32 QNKDLFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH--LP----  102 (328)
T ss_dssp             HHHHHHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC--CS----
T ss_pred             hhHhhcCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc--CC----
Confidence            3345668899999999999999998876 3 4699999999 589999999999999889999999987641  10    


Q ss_pred             CCCceeEEEEcCC------CcccHHHHHHHHhcccCCeEEEEe
Q 029836           93 YHGTFDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        93 ~~~~~D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       .++||+|++...      ......++..+.++|+|||.++.+
T Consensus       103 -~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~  144 (328)
T 1g6q_1          103 -FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             -SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             -CCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence             368999998742      233567888888999999999843

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.53  E-value=7.2e-15  Score=111.43  Aligned_cols=104  Identities=13%  Similarity=0.160  Sum_probs=85.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++.+  +.+++++|+++.+++.++++....   ++++++++|..+. + +     ..++|
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~-~-----~~~~f  121 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK-E-F-----PENNF  121 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC-C-C-----CTTCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC-C-C-----CCCcE
Confidence            356799999999999999999875  479999999999999998877554   6899999998764 1 1     15789


Q ss_pred             eEEEEcCC---C--cccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           98 DFVFVDAD---K--DNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        98 D~v~~d~~---~--~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      |+|++...   .  .+...+++.+.++|+|||.+++.+...
T Consensus       122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  162 (266)
T 3ujc_A          122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA  162 (266)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            99998765   2  556788999999999999999987643

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.53  E-value=2.1e-14  Score=107.71  Aligned_cols=98  Identities=13%  Similarity=0.088  Sum_probs=80.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|..+..+++.   +.+++++|+++.+++.++++         ++++.+|..+.+..+.     +++|
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~-----~~~f  102 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLP-----DKYL  102 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSC-----TTCB
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcC-----CCCe
Confidence            35689999999999999999886   46799999999999888763         7889999987654432     5789


Q ss_pred             eEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           98 DFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        98 D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |+|++...     ......+++.+.+.|||||++++....
T Consensus       103 D~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A          103 DGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             SEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             eEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            99998764     224578999999999999999986554

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.53  E-value=4.2e-14  Score=104.51  Aligned_cols=108  Identities=17%  Similarity=0.186  Sum_probs=85.0

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      .++..+. ..++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++.     .+++++++|+.+...   
T Consensus        36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~---  103 (220)
T 3hnr_A           36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEV---  103 (220)
T ss_dssp             HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCC---
T ss_pred             HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCC---
Confidence            4444443 347789999999999999999976   5799999999999999988764     478999999875421   


Q ss_pred             hcccCCCceeEEEEcCCC---ccc--HHHHHHHHhcccCCeEEEEeCcCC
Q 029836           89 QDEKYHGTFDFVFVDADK---DNY--VNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~~---~~~--~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                           .++||+|++....   .+.  ..+++.+.+.|+|||.+++.+..+
T Consensus       104 -----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          104 -----PTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             -----CSCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             -----CCCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence                 3689999988652   222  238999999999999999976544

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.53  E-value=2.8e-14  Score=107.75  Aligned_cols=98  Identities=12%  Similarity=0.223  Sum_probs=82.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..+++..+  .+++++|+++.+++.++++..    ..+++++++|+.+. + .     ..++||
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~-~-~-----~~~~fD  110 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDI-A-I-----EPDAYN  110 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGC-C-C-----CTTCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhC-C-C-----CCCCeE
Confidence            578999999999999999998732  499999999999999988765    36899999998653 2 1     147899


Q ss_pred             EEEEcCC---CcccHHHHHHHHhcccCCeEEEEe
Q 029836           99 FVFVDAD---KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        99 ~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|++...   ..+...+++.+.++|+|||.+++.
T Consensus       111 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          111 VVLSSLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence            9998765   356788999999999999999986

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.53  E-value=1.2e-14  Score=109.79  Aligned_cols=120  Identities=14%  Similarity=0.140  Sum_probs=87.6

Q ss_pred             HHHHHHHhhc---CCCEEEEEcccccHHHHHHHhh--CCCCCEEEEEeCCchHHHHHHHHHHHc---CCCCc--------
Q 029836            9 QFFSMLLKLI---NAKNTMEIGVFTGYSLLATALA--IPDDGKILALDITKEHYEKGLPIIQKA---GVAHK--------   72 (187)
Q Consensus         9 ~~l~~l~~~~---~~~~vLeiG~g~G~~~~~l~~~--~~~~~~v~~vd~~~~~~~~a~~~~~~~---~~~~~--------   72 (187)
                      +++..++...   ++.+|||+|||+|..+..++..  .+ ..+|+++|+++.+++.|++++...   ++..+        
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~-~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~  116 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRS-LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQS  116 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGG-EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccC-CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhh
Confidence            4555555432   4569999999999999999987  33 578999999999999999988765   44222        


Q ss_pred             -----------------eE-------------EEeCCchHHHHHHhhcccCCCceeEEEEcCC---C---------cccH
Q 029836           73 -----------------ID-------------FREGPALPLLDQLIQDEKYHGTFDFVFVDAD---K---------DNYV  110 (187)
Q Consensus        73 -----------------i~-------------~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~---~---------~~~~  110 (187)
                                       ++             +.++|..+..+.....  ..++||+|+++.+   .         ..+.
T Consensus       117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~  194 (250)
T 1o9g_A          117 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVL--AGSAPDVVLTDLPYGERTHWEGQVPGQPVA  194 (250)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH--TTCCCSEEEEECCGGGSSSSSSCCCHHHHH
T ss_pred             hhcccccchhhhhhhhhhhhhccccccccccceeeccccccccccccc--CCCCceEEEeCCCeeccccccccccccHHH
Confidence                             66             9999987654210000  0348999999864   1         1235


Q ss_pred             HHHHHHHhcccCCeEEEEeCc
Q 029836          111 NYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus       111 ~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+++.+.++|+|||++++.+.
T Consensus       195 ~~l~~~~~~LkpgG~l~~~~~  215 (250)
T 1o9g_A          195 GLLRSLASALPAHAVIAVTDR  215 (250)
T ss_dssp             HHHHHHHHHSCTTCEEEEEES
T ss_pred             HHHHHHHHhcCCCcEEEEeCc
Confidence            788999999999999998433

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.53  E-value=6.5e-14  Score=111.47  Aligned_cols=108  Identities=15%  Similarity=0.135  Sum_probs=89.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH-HHHhhcccCCCc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL-DQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l-~~~~~~~~~~~~   96 (187)
                      .++.+|||||||+|..+..+++..| +.+++++|+ +.+++.|+++++..++.++++++.+|..+.. + +      .++
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~------p~~  248 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNK-EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP-F------PTG  248 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHST-TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC-C------CCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC-C------CCC
Confidence            4678999999999999999999887 689999999 9999999999998888789999999987531 1 1      357


Q ss_pred             eeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           97 FDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        97 ~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      ||+|++...     .+....+++++.+.|+|||.+++.+..+.
T Consensus       249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  291 (363)
T 3dp7_A          249 FDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWD  291 (363)
T ss_dssp             CSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred             cCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccC
Confidence            999998654     22345789999999999999998776654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.53  E-value=8.1e-14  Score=103.29  Aligned_cols=111  Identities=16%  Similarity=0.144  Sum_probs=87.3

Q ss_pred             HHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836           10 FFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus        10 ~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      ++..+... .++.+|||+|||+|..+..+++..   .+++++|+++.+++.++++++..+  .+++++++|..+..  ..
T Consensus        28 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--~~  100 (227)
T 1ve3_A           28 LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLS--FE  100 (227)
T ss_dssp             HHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCC--SC
T ss_pred             HHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCC--CC
Confidence            34444433 346799999999999999998763   399999999999999999998876  58999999986531  10


Q ss_pred             hcccCCCceeEEEEcCC--C---cccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           89 QDEKYHGTFDFVFVDAD--K---DNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~--~---~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                           .++||+|++...  .   .+...+++.+.++|+|||.+++.+..
T Consensus       101 -----~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          101 -----DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             -----TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -----CCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence                 468999998765  2   23467889999999999999887554

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.53  E-value=1.3e-14  Score=109.79  Aligned_cols=98  Identities=12%  Similarity=0.188  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHhhc-----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836            5 PDEAQFFSMLLKLI-----NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP   79 (187)
Q Consensus         5 ~~~~~~l~~l~~~~-----~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d   79 (187)
                      ++...++..++...     ++.+|||+|||+|..+..++...+ +.+++++|+++.+++.|+++++.+++.++++++++|
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  124 (254)
T 2h00_A           46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP  124 (254)
T ss_dssp             HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             HHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcc
Confidence            56667777776543     456999999999999999987754 589999999999999999999999987789999999


Q ss_pred             chH-HHHHHhhcccCCCceeEEEEcCC
Q 029836           80 ALP-LLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        80 ~~~-~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      +.+ ++..+...  .+++||+|+++++
T Consensus       125 ~~~~~~~~~~~~--~~~~fD~i~~npp  149 (254)
T 2h00_A          125 QKTLLMDALKEE--SEIIYDFCMCNPP  149 (254)
T ss_dssp             TTCSSTTTSTTC--CSCCBSEEEECCC
T ss_pred             hhhhhhhhhhcc--cCCcccEEEECCC
Confidence            765 22222100  0158999999864

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.53  E-value=8.3e-14  Score=105.46  Aligned_cols=100  Identities=22%  Similarity=0.169  Sum_probs=82.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++ . +..+++++.++|+.+. + +.     +++|
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~-~-~~-----~~~f  105 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAI-P-LP-----DESV  105 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSC-C-SC-----TTCE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccC-C-CC-----CCCe
Confidence            45789999999999999999875   479999999999999999987 2 3336899999998653 2 11     4689


Q ss_pred             eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEe
Q 029836           98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++...   ..+...+++.+.++|+|||++++.
T Consensus       106 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          106 HGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            99998764   235678999999999999999986

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.52  E-value=5.3e-14  Score=106.87  Aligned_cols=105  Identities=13%  Similarity=0.067  Sum_probs=82.8

Q ss_pred             HHHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836           10 FFSMLLKLI-NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus        10 ~l~~l~~~~-~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      ++..+.... ++.+|||+|||+|..+..+++.   ..+++++|+++.+++.|++++      .+++++++|+.+...   
T Consensus        40 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~---  107 (263)
T 3pfg_A           40 LAALVRRHSPKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRN------PDAVLHHGDMRDFSL---  107 (263)
T ss_dssp             HHHHHHHHCTTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTCCC---
T ss_pred             HHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhC------CCCEEEECChHHCCc---
Confidence            333343333 4589999999999999998876   468999999999999998875      378999999876421   


Q ss_pred             hcccCCCceeEEEEcC-C---C---cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           89 QDEKYHGTFDFVFVDA-D---K---DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~-~---~---~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                           .++||+|++.. .   .   ++...+++.+.++|+|||+++++..
T Consensus       108 -----~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  152 (263)
T 3pfg_A          108 -----GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW  152 (263)
T ss_dssp             -----SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             -----cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence                 46899999875 3   1   3456789999999999999999754

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.52  E-value=1.3e-13  Score=101.94  Aligned_cols=105  Identities=10%  Similarity=0.131  Sum_probs=82.8

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      +...++.+|||+|||+|..+..+++.   +.+++++|+++.+++.++++       .++.+..++..+.......   ..
T Consensus        48 ~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~---~~  114 (227)
T 3e8s_A           48 ILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVP---VG  114 (227)
T ss_dssp             HHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSC---CC
T ss_pred             hhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccc---cC
Confidence            34456799999999999999999876   56999999999999998876       3677888888665221110   13


Q ss_pred             CceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           95 GTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        95 ~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .+||+|++...  ..+...+++.+.++|+|||++++....
T Consensus       115 ~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~  154 (227)
T 3e8s_A          115 KDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLH  154 (227)
T ss_dssp             CCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecC
Confidence            46999998754  556789999999999999999997653

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.52  E-value=1.1e-13  Score=109.18  Aligned_cols=100  Identities=20%  Similarity=0.100  Sum_probs=86.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..++. ++  + ..+|+++|+++.+++.+++|++.+++.++++++++|+.+++          ++|
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----------~~f  259 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----------VKG  259 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----------CCE
T ss_pred             CCCCEEEEccCccCHHHHh-cc--C-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----------CCC
Confidence            4778999999999999999 76  3 68999999999999999999999998778999999998664          379


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |+|++|++. ....+++.+.++|+|||++++....
T Consensus       260 D~Vi~dpP~-~~~~~l~~~~~~L~~gG~l~~~~~~  293 (336)
T 2yx1_A          260 NRVIMNLPK-FAHKFIDKALDIVEEGGVIHYYTIG  293 (336)
T ss_dssp             EEEEECCTT-TGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             cEEEECCcH-hHHHHHHHHHHHcCCCCEEEEEEee
Confidence            999998753 2347888899999999999886544

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.52  E-value=9.5e-14  Score=106.97  Aligned_cols=106  Identities=15%  Similarity=0.146  Sum_probs=86.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...+...+++++++|..+..-..      .++|
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~f  134 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL------GKEF  134 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC------SSCE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCC------CCCc
Confidence            56789999999999999988875 3 46999999999999999999998887778999999987541000      5689


Q ss_pred             eEEEEcCCC-------cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           98 DFVFVDADK-------DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        98 D~v~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |+|++....       .+...+++.+.++|+|||.+++...
T Consensus       135 D~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  175 (298)
T 1ri5_A          135 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  175 (298)
T ss_dssp             EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            999987542       3346788999999999999998643

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.52  E-value=7.7e-14  Score=111.15  Aligned_cols=104  Identities=14%  Similarity=0.236  Sum_probs=84.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...+.++|||||||+|..+.+.+++.  ..+|++||.++ +++.|+++++.+++.++++++++++.++-  +      .+
T Consensus        80 ~~~~~k~VLDvG~GtGiLs~~Aa~aG--A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~--l------pe  148 (376)
T 4hc4_A           80 AALRGKTVLDVGAGTGILSIFCAQAG--ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE--L------PE  148 (376)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC--C------SS
T ss_pred             HhcCCCEEEEeCCCccHHHHHHHHhC--CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec--C------Cc
Confidence            34678999999999999998888763  46899999986 88999999999999999999999997652  1      56


Q ss_pred             ceeEEEEcCC-----Cc-ccHHHHHHHHhcccCCeEEEEeC
Q 029836           96 TFDFVFVDAD-----KD-NYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        96 ~~D~v~~d~~-----~~-~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ++|+|+....     .+ ....++....++|+|||.++.+.
T Consensus       149 ~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~  189 (376)
T 4hc4_A          149 QVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPAS  189 (376)
T ss_dssp             CEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCE
T ss_pred             cccEEEeecccccccccchhhhHHHHHHhhCCCCceECCcc
Confidence            8999997532     23 45667777779999999998543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.52  E-value=2.9e-14  Score=107.79  Aligned_cols=98  Identities=15%  Similarity=0.155  Sum_probs=83.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++.++ ..+++++|+++.+++.++++      .+++++.++|+.+..  .      .++|
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~--~------~~~f   96 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK--P------AQKA   96 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC--C------SSCE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC--c------cCCc
Confidence            4567999999999999999998875 67899999999999999887      257899999987643  1      5789


Q ss_pred             eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      |+|++...   ..+...+++.+.+.|+|||.+++..
T Consensus        97 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A           97 DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             EEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence            99998765   3466889999999999999999864

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.52  E-value=9.1e-14  Score=109.97  Aligned_cols=108  Identities=16%  Similarity=0.118  Sum_probs=90.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      +.+|||||||+|..+..+++.+| ..+++++|+ +.+++.+++++...+..++++++.+|..+..+..      .++||+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~~D~  251 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE------GGAADV  251 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT------TCCEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC------CCCccE
Confidence            78999999999999999999887 689999999 8899999999999888788999999987653111      457999


Q ss_pred             EEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836          100 VFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus       100 v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      |++...     .+....+++.+.+.|+|||.+++.+..+..
T Consensus       252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (352)
T 3mcz_A          252 VMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMND  292 (352)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            998654     123478899999999999999988766543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.51  E-value=1e-13  Score=110.49  Aligned_cols=106  Identities=17%  Similarity=0.165  Sum_probs=89.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+..+|||+|||+|..+..+++.+| +.+++++|+ +.+++.+++++...++.+++++..+|..+.+         ..+|
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---------p~~~  269 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFP-GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI---------PDGA  269 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC---------CSSC
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC---------CCCc
Confidence            3568999999999999999999887 689999999 9999999999999988889999999987332         2379


Q ss_pred             eEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           98 DFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        98 D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      |+|++...-     .....+++.+.+.|+|||.+++.+....
T Consensus       270 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~  311 (369)
T 3gwz_A          270 DVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLID  311 (369)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred             eEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            999986541     2234789999999999999999876654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.51  E-value=1.4e-13  Score=103.09  Aligned_cols=107  Identities=20%  Similarity=0.254  Sum_probs=85.3

Q ss_pred             HHHHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836            9 QFFSMLLKLI-NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus         9 ~~l~~l~~~~-~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      .++..+.... +..+|||+|||+|..+..+++.    .+++++|+++.+++.+++++...+  .++++.++|..+..  .
T Consensus        22 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--~   93 (243)
T 3d2l_A           22 EWVAWVLEQVEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELE--L   93 (243)
T ss_dssp             HHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCC--C
T ss_pred             HHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcC--C
Confidence            4555555544 4579999999999999988764    689999999999999999998766  47899999986542  1


Q ss_pred             hhcccCCCceeEEEEcCC-------CcccHHHHHHHHhcccCCeEEEEe
Q 029836           88 IQDEKYHGTFDFVFVDAD-------KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                            .++||+|++...       ......+++.+.++|+|||.++++
T Consensus        94 ------~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           94 ------PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             ------SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                  468999998642       134567889999999999999984

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.51  E-value=7.4e-14  Score=109.74  Aligned_cols=106  Identities=18%  Similarity=0.097  Sum_probs=89.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||||||+|..+..+++.+| ..+++++|+ +.+++.+++++...++.+++++..+|..+.+         ..+||
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------p~~~D  237 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL---------PAGAG  237 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------CCSCS
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC---------CCCCc
Confidence            357999999999999999999887 689999999 9999999999999988889999999986332         23799


Q ss_pred             EEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           99 FVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        99 ~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      +|++...     .+....+++++.+.|+|||.+++.+.....
T Consensus       238 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  279 (332)
T 3i53_A          238 GYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD  279 (332)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred             EEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence            9998654     122477899999999999999998776554

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.51  E-value=3.5e-14  Score=105.91  Aligned_cols=103  Identities=12%  Similarity=0.130  Sum_probs=79.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-chHHHHH---HHHHHHcCCCCceEEEeCCchHHHHHHhhcccC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDIT-KEHYEKG---LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~-~~~~~~a---~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      .++.+|||||||+|..+..+++..+ +.+|+++|++ +.+++.|   +++....++ +++++.++|+.++ +...     
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l-~~~~-----   94 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESL-PFEL-----   94 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBC-CGGG-----
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHh-hhhc-----
Confidence            4567999999999999999997654 7899999999 5555555   777777776 5899999999765 3211     


Q ss_pred             CCceeEEEEcCCC--------cccHHHHHHHHhcccCCeEEEE
Q 029836           94 HGTFDFVFVDADK--------DNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        94 ~~~~D~v~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+.+|.|++....        .....++.++.++|||||.+++
T Consensus        95 ~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           95 KNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             TTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             cCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            3578888775431        2346789999999999999988

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.50  E-value=2.1e-14  Score=111.19  Aligned_cols=104  Identities=11%  Similarity=0.071  Sum_probs=84.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC--CceEEEeCCchHHHHHHhhcccCCCc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA--HKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++...+..  .+++++++|+.+...        .++
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~  150 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL--------DKR  150 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC--------SCC
T ss_pred             CCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc--------CCC
Confidence            3459999999999999999976   468999999999999999999876632  589999999976421        468


Q ss_pred             eeEEEEcCC------CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           97 FDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        97 ~D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ||+|++...      .+....+++.+.++|+|||.+++.....
T Consensus       151 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  193 (299)
T 3g2m_A          151 FGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS  193 (299)
T ss_dssp             EEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             cCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence            999986421      2235789999999999999999976544

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.50  E-value=3.4e-13  Score=107.60  Aligned_cols=123  Identities=15%  Similarity=0.085  Sum_probs=89.1

Q ss_pred             CCCHHHHHH-HHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC
Q 029836            2 MTSPDEAQF-FSMLLKLI--NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG   78 (187)
Q Consensus         2 ~~~~~~~~~-l~~l~~~~--~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~   78 (187)
                      |+++...+. +..++...  .+.+|||+|||+|..++.+++.   ..+|+++|+++.+++.|++|++.+++ ++++++.+
T Consensus       193 Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~  268 (369)
T 3bt7_A          193 QPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRM  268 (369)
T ss_dssp             CSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECC
T ss_pred             cCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEEC
Confidence            455555443 34444433  3578999999999999998874   46999999999999999999999988 68999999


Q ss_pred             CchHHHHHHhhcc---------cCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           79 PALPLLDQLIQDE---------KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        79 d~~~~l~~~~~~~---------~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |+.+.++.+....         ....+||+|++|++....   .+.+.+.|+++|.+++..+
T Consensus       269 d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          269 AAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL---DSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             CSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCC---CHHHHHHHTTSSEEEEEES
T ss_pred             CHHHHHHHHhhccccccccccccccCCCCEEEECcCcccc---HHHHHHHHhCCCEEEEEEC
Confidence            9998876552110         000379999999875433   2334455668888876543

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.50  E-value=5.4e-14  Score=103.42  Aligned_cols=103  Identities=20%  Similarity=0.149  Sum_probs=82.0

Q ss_pred             HHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh
Q 029836           11 FSMLLK-LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ   89 (187)
Q Consensus        11 l~~l~~-~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~   89 (187)
                      +..++. ..++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++       ++++..+|..+..  .  
T Consensus        34 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~--~--   99 (211)
T 3e23_A           34 LTKFLGELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD--A--   99 (211)
T ss_dssp             HHHHHTTSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC--C--
T ss_pred             HHHHHHhcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC--C--
Confidence            344443 345679999999999999999976   469999999999999999877       4567788886543  1  


Q ss_pred             cccCCCceeEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           90 DEKYHGTFDFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                          .++||+|++....     ++...+++.+.+.|+|||++++...
T Consensus       100 ----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  142 (211)
T 3e23_A          100 ----IDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYK  142 (211)
T ss_dssp             ----CSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----CCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence                6799999987652     2556889999999999999998643

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.50  E-value=6.4e-14  Score=104.89  Aligned_cols=107  Identities=12%  Similarity=0.218  Sum_probs=84.6

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhc
Q 029836           11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD   90 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~   90 (187)
                      +..++...++.+|||+|||+|..+..+++. + ..+++++|+++.+++.++++...    .++++.++|..+..  ..  
T Consensus        35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~--~~--  104 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-G-ASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLH--LP--  104 (243)
T ss_dssp             HHHHSCCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCC--CC--
T ss_pred             HHHhccccCCCEEEEEcCcCCHHHHHHHHC-C-CCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhcc--CC--
Confidence            444444456789999999999999999876 2 24999999999999999876543    47999999987642  11  


Q ss_pred             ccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           91 EKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                         .++||+|++...   ..+...+++.+.++|+|||.+++..
T Consensus       105 ---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          105 ---QDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             ---TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---CCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence               468999998764   3456789999999999999999864

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.50  E-value=8.1e-14  Score=106.84  Aligned_cols=100  Identities=18%  Similarity=0.145  Sum_probs=82.3

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      +...++.+|||||||+|..+..+++  + +.+++++|+++.+++.+++++      +++++.++|+.+. + .      .
T Consensus        53 l~~~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~------~  115 (279)
T 3ccf_A           53 LNPQPGEFILDLGCGTGQLTEKIAQ--S-GAEVLGTDNAATMIEKARQNY------PHLHFDVADARNF-R-V------D  115 (279)
T ss_dssp             HCCCTTCEEEEETCTTSHHHHHHHH--T-TCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTC-C-C------S
T ss_pred             hCCCCCCEEEEecCCCCHHHHHHHh--C-CCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhC-C-c------C
Confidence            3445678999999999999999998  3 689999999999999998765      5788999998753 2 1      4


Q ss_pred             CceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           95 GTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        95 ~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ++||+|++...   ..+...+++.+.+.|+|||++++...
T Consensus       116 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A          116 KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             SCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEec
Confidence            68999998765   24667899999999999999998643

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.50  E-value=3.1e-13  Score=109.59  Aligned_cols=113  Identities=17%  Similarity=0.120  Sum_probs=88.4

Q ss_pred             CCCHHHHHH-HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            2 MTSPDEAQF-FSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         2 ~~~~~~~~~-l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      +.++...+. +..+....++.+|||+|||+|..++.+++.   ..+|+++|+++.+++.|+++++.+++.  ++++++|+
T Consensus       272 q~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~  346 (425)
T 2jjq_A          272 QTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASD  346 (425)
T ss_dssp             CSBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCT
T ss_pred             ccCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECCh
Confidence            344554443 444444566789999999999999999975   469999999999999999999998884  99999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccH-HHHHHHHhcccCCeEEEEe
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYV-NYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+.++         .+||+|++|++..... .+++.+ ..|+|+|+++++
T Consensus       347 ~~~~~---------~~fD~Vv~dPPr~g~~~~~~~~l-~~l~p~givyvs  386 (425)
T 2jjq_A          347 REVSV---------KGFDTVIVDPPRAGLHPRLVKRL-NREKPGVIVYVS  386 (425)
T ss_dssp             TTCCC---------TTCSEEEECCCTTCSCHHHHHHH-HHHCCSEEEEEE
T ss_pred             HHcCc---------cCCCEEEEcCCccchHHHHHHHH-HhcCCCcEEEEE
Confidence            87542         2799999998855443 455555 458999999874

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.50  E-value=1e-13  Score=103.09  Aligned_cols=104  Identities=19%  Similarity=0.234  Sum_probs=84.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC----CceEEEeCCchHHHHHHhhcccC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA----HKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~----~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      .++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...+..    .++++..+|..+..  .     .
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~-----~   98 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS--F-----H   98 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC--S-----C
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC--C-----C
Confidence            45779999999999999999986   569999999999999999998877662    46899999986531  1     1


Q ss_pred             CCceeEEEEcCCC---cc---cHHHHHHHHhcccCCeEEEEeCc
Q 029836           94 HGTFDFVFVDADK---DN---YVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~---~~---~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .++||+|++....   .+   ...+++.+.++|+|||.+++.+.
T Consensus        99 ~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A           99 DSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             TTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            5689999987641   22   23789999999999999998754

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.50  E-value=1e-13  Score=98.45  Aligned_cols=100  Identities=11%  Similarity=0.037  Sum_probs=81.9

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++.+|||+|||+|..+..+++..   .+++++|+++.+++.++++      .+++++..+| .   + +     ..+
T Consensus        14 ~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d-~---~-~-----~~~   74 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK------FDSVITLSDP-K---E-I-----PDN   74 (170)
T ss_dssp             HSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH------CTTSEEESSG-G---G-S-----CTT
T ss_pred             CcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC-C---C-C-----CCC
Confidence            45567799999999999999999764   4999999999999999887      2689999988 1   1 1     156


Q ss_pred             ceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           96 TFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        96 ~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      +||+|++...   ..+...+++.+.+.|+|||.+++.+....
T Consensus        75 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  116 (170)
T 3i9f_A           75 SVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE  116 (170)
T ss_dssp             CEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             ceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence            8999998765   34567899999999999999999876544

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.49  E-value=2.2e-14  Score=106.83  Aligned_cols=102  Identities=18%  Similarity=0.088  Sum_probs=80.4

Q ss_pred             HHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            9 QFFSMLLK--LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         9 ~~l~~l~~--~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      .++..++.  ..++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++      .++++++++|..+.++.
T Consensus        36 ~l~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~  106 (226)
T 3m33_A           36 LTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPA  106 (226)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCT
T ss_pred             HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCC
Confidence            44444443  346789999999999999999986   47999999999999999987      25799999998644331


Q ss_pred             HhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           87 LIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      -     .+++||+|++..   +...+++.+.++|||||.++
T Consensus       107 ~-----~~~~fD~v~~~~---~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          107 G-----LGAPFGLIVSRR---GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             T-----CCCCEEEEEEES---CCSGGGGGHHHHEEEEEEEE
T ss_pred             c-----CCCCEEEEEeCC---CHHHHHHHHHHHcCCCcEEE
Confidence            0     036899999873   45567788899999999998

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.49  E-value=1.1e-13  Score=110.50  Aligned_cols=102  Identities=17%  Similarity=0.099  Sum_probs=84.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++++|||+| |+|..+..++...+ ..+|+++|+++.+++.|+++++..++. +++++++|+.+.++...     .++||
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~-----~~~fD  243 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYA-----LHKFD  243 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTT-----SSCBS
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhc-----cCCcc
Confidence            478999999 99999999987644 579999999999999999999999885 89999999987444210     45899


Q ss_pred             EEEEcCCC--cccHHHHHHHHhcccCCe-EEEE
Q 029836           99 FVFVDADK--DNYVNYHKRLIELVKVGG-VIGY  128 (187)
Q Consensus        99 ~v~~d~~~--~~~~~~~~~~~~~L~~gG-~lv~  128 (187)
                      +|++|++.  .....+++.+.+.|+||| ++++
T Consensus       244 ~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~  276 (373)
T 2qm3_A          244 TFITDPPETLEAIRAFVGRGIATLKGPRCAGYF  276 (373)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEE
T ss_pred             EEEECCCCchHHHHHHHHHHHHHcccCCeEEEE
Confidence            99999752  234678899999999999 4344

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.48  E-value=2.7e-13  Score=105.35  Aligned_cols=106  Identities=17%  Similarity=0.226  Sum_probs=77.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC-----ceEEEeCCchH-----HHHHHhh
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH-----KIDFREGPALP-----LLDQLIQ   89 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-----~i~~~~~d~~~-----~l~~~~~   89 (187)
                      +.+|||||||+|..+..++.. + ..+|+|+|+++.+++.|++.....+...     ++++.+.+...     .++... 
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~-~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~-  125 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYG-E-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF-  125 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC-
T ss_pred             CCeEEEEecCCcHhHHHHHhc-C-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc-
Confidence            579999999999766655543 2 4799999999999999999888765421     25677776621     122110 


Q ss_pred             cccCCCceeEEEEcCC------CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           90 DEKYHGTFDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                         ..++||+|++...      .++...+++.+.++|||||++++...
T Consensus       126 ---~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          126 ---YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             ---CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence               1468999986532      23557899999999999999998654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.48  E-value=1.3e-13  Score=103.89  Aligned_cols=101  Identities=13%  Similarity=0.140  Sum_probs=82.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..+++..  ..+++++|+++.+++.+++++...   .+++++++|..+. + +     ..++||
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~-~-----~~~~fD  160 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETA-T-L-----PPNTYD  160 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGC-C-C-----CSSCEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHC-C-C-----CCCCeE
Confidence            56899999999999999988764  468999999999999999887654   5799999998763 2 1     046899


Q ss_pred             EEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           99 FVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        99 ~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|++....     .+...+++.+.++|+|||++++.+.
T Consensus       161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            99987652     3457789999999999999998764

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.48  E-value=2e-13  Score=97.40  Aligned_cols=104  Identities=13%  Similarity=0.148  Sum_probs=81.2

Q ss_pred             CCHHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            3 TSPDEAQFFSMLLKL--INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~--~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      -.+++..++.. +..  .++.+|||+|||+|..+..+++.   . +++++|+++.+++.          .++++++++|+
T Consensus         6 P~~~~~~l~~~-l~~~~~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~----------~~~~~~~~~d~   70 (170)
T 3q87_B            6 PGEDTYTLMDA-LEREGLEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES----------HRGGNLVRADL   70 (170)
T ss_dssp             CCHHHHHHHHH-HHHHTCCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT----------CSSSCEEECST
T ss_pred             cCccHHHHHHH-HHhhcCCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc----------ccCCeEEECCh
Confidence            45677777777 444  67789999999999999999875   3 99999999999876          36789999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCc------------ccHHHHHHHHhcccCCeEEEEeC
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKD------------NYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~------------~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .+.++        .++||+|+++.+..            ....+++.+.+.+ |||.+++..
T Consensus        71 ~~~~~--------~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           71 LCSIN--------QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             TTTBC--------GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred             hhhcc--------cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence            76432        36899999986521            2356777888878 999998754

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.48  E-value=5.3e-14  Score=106.94  Aligned_cols=110  Identities=16%  Similarity=0.063  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      +...+.+...+...++.+|||||||+|.++..+++  + +.+|+++|+++.+++.++++.       +++++++|+.+. 
T Consensus        20 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~-   88 (261)
T 3ege_A           20 IRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN--Q-GLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENL-   88 (261)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT--T-TCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSC-
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh--C-CCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhC-
Confidence            34444454555556788999999999999999997  2 689999999998887665432       899999999653 


Q ss_pred             HHHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           85 DQLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      + +     .+++||+|++...   ..+...+++.+.+.|| ||.+++.+..
T Consensus        89 ~-~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A           89 A-L-----PDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             C-S-----CTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             C-C-----CCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence            2 1     1578999998764   4567889999999999 9977765543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.48  E-value=2.2e-13  Score=111.98  Aligned_cols=100  Identities=14%  Similarity=0.172  Sum_probs=83.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++++|||||||+|..+..+++. + ..+|+++|+++ +++.|+++++.+++.++++++++|..+..  +      .++|
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~--~------~~~f  225 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--L------PEQV  225 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--C------SSCE
T ss_pred             cCCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc--c------CCCe
Confidence            46789999999999999988874 3 57999999998 99999999999999889999999997641  1      4589


Q ss_pred             eEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+|++...     .+.....+..+.+.|+|||++++
T Consensus       226 D~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          226 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             EEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             EEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            99998754     24456677778899999999984

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.48  E-value=1.4e-13  Score=109.62  Aligned_cols=103  Identities=18%  Similarity=0.220  Sum_probs=86.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++++...++.++++++.+|..+.+         ...|
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~  249 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL---------PVTA  249 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SCCE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC---------CCCC
Confidence            3568999999999999999999876 689999999 9999999999999888779999999986532         2359


Q ss_pred             eEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           98 DFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        98 D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |+|++....     .....+++.+.+.|+|||.+++.+.
T Consensus       250 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          250 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            999987542     1234789999999999999888665

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.48  E-value=6.1e-13  Score=105.56  Aligned_cols=106  Identities=13%  Similarity=0.021  Sum_probs=88.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|..+..+++..| +.+++++|+ +.+++.++++++..+..++++++.+|..+. +        ...+
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--------~~~~  257 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S--------YPEA  257 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-C--------CCCC
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC-C--------CCCC
Confidence            4567999999999999999999886 689999999 999999999999988877899999998754 1        2234


Q ss_pred             eEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           98 DFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        98 D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      |+|++....     +....+++.+.+.|+|||.+++.+....
T Consensus       258 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~  299 (359)
T 1x19_A          258 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID  299 (359)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred             CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccC
Confidence            999987542     2257789999999999999987765543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.47  E-value=4.4e-13  Score=105.21  Aligned_cols=107  Identities=17%  Similarity=0.204  Sum_probs=89.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++.++ +.+++++|++ .+++.+++++...++.++++++.+|..+.  ..      .+.|
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~------~~~~  233 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV--DY------GNDY  233 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS--CC------CSCE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC--CC------CCCC
Confidence            5668999999999999999999886 6899999999 99999999999988877899999998753  11      3459


Q ss_pred             eEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           98 DFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        98 D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      |+|++....     +....+++.+.+.|+|||.+++.+....
T Consensus       234 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  275 (335)
T 2r3s_A          234 DLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN  275 (335)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred             cEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence            999986541     3346889999999999998888766543

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.47  E-value=2.3e-13  Score=102.21  Aligned_cols=105  Identities=13%  Similarity=0.061  Sum_probs=81.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH-hhcccCCCc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL-IQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~-~~~~~~~~~   96 (187)
                      .+..+|||+|||+|..+..+++..+   +|+++|+++.+++.+++++.    ..+++++++|..+..... .+.   ...
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~---~~~  124 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHS---EIG  124 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHH---HHC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc----ccCceEEECccccccccccccc---ccC
Confidence            4557999999999999999998753   89999999999999998772    248999999997643211 100   135


Q ss_pred             eeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           97 FDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        97 ~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ||+|++...     ..+...+++.+.+.|||||++++.+..
T Consensus       125 ~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          125 DANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             SCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             ccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            899998754     235678999999999999998776654

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.47  E-value=6.5e-14  Score=103.54  Aligned_cols=103  Identities=17%  Similarity=0.135  Sum_probs=77.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHH----HHcCCCCceEEEeCCchHHHHHHhhccc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPII----QKAGVAHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~----~~~~~~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      ..++.+|||+|||+|..+..+++..| +.+|+++|+++.+++.+.++.    ...+. ++++++++|+.+. +..     
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l-~~~-----   96 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERL-PPL-----   96 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTC-CSC-----
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhC-CCC-----
Confidence            45678999999999999999999876 689999999999888643333    23444 5899999999763 211     


Q ss_pred             CCCceeEEEEcCCC--------cccHHHHHHHHhcccCCeEEEEe
Q 029836           93 YHGTFDFVFVDADK--------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        93 ~~~~~D~v~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       .+. |.|++....        .+...+++.+.++|||||.+++.
T Consensus        97 -~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           97 -SGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             -CCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             -CCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence             334 777654421        22367899999999999999984

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.47  E-value=2.7e-13  Score=107.55  Aligned_cols=104  Identities=18%  Similarity=0.219  Sum_probs=87.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++++...++.++++++.+|..+.+         ...|
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~  250 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---------PRKA  250 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SSCE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC---------CCCc
Confidence            3567999999999999999999876 689999999 9999999999999888779999999986532         2359


Q ss_pred             eEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           98 DFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        98 D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |+|++....     .....+++.+.+.|+|||.+++.+..
T Consensus       251 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          251 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            999986542     12357899999999999999887665

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.47  E-value=3.9e-13  Score=107.36  Aligned_cols=115  Identities=19%  Similarity=0.223  Sum_probs=90.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +.+.....+..++ ..++.+|||+|||+|..++.++...+ .++++++|+++.+++.|+++++..++.+++++.++|+.+
T Consensus       202 l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~  279 (373)
T 3tm4_A          202 LKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ  279 (373)
T ss_dssp             CCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGG
T ss_pred             ccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence            3455666666666 66778999999999999999998743 458999999999999999999999988899999999987


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCC-------cc----cHHHHHHHHhcccCCeEEE
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADK-------DN----YVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~-------~~----~~~~~~~~~~~L~~gG~lv  127 (187)
                      ... .      .++||+|+++++.       ..    +..+++.+.+.| .|+.++
T Consensus       280 ~~~-~------~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~  327 (373)
T 3tm4_A          280 LSQ-Y------VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVF  327 (373)
T ss_dssp             GGG-T------CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEE
T ss_pred             CCc-c------cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEE
Confidence            532 1      4689999998761       11    356777888877 444343

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.47  E-value=2.6e-12  Score=94.05  Aligned_cols=110  Identities=16%  Similarity=0.158  Sum_probs=84.7

Q ss_pred             CCHHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836            3 TSPDEAQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP   79 (187)
Q Consensus         3 ~~~~~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d   79 (187)
                      +++.....+...+.   ..++.+|||+|||+|..+..++.. + ..+++++|+++.+++.++++++..++  +++++++|
T Consensus        30 ~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d  105 (207)
T 1wy7_A           30 TPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGD  105 (207)
T ss_dssp             CCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESC
T ss_pred             CchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECc
Confidence            34444444444443   235789999999999999999876 2 35899999999999999999988876  79999999


Q ss_pred             chHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836           80 ALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +.++          .++||+|+++++     ......+++.+.+.+  |+++++
T Consensus       106 ~~~~----------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~  147 (207)
T 1wy7_A          106 VSEF----------NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSI  147 (207)
T ss_dssp             GGGC----------CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEE
T ss_pred             hHHc----------CCCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEE
Confidence            9763          348999999976     133467888888887  666654

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.46  E-value=1.8e-13  Score=108.17  Aligned_cols=100  Identities=14%  Similarity=0.205  Sum_probs=83.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ..+.+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...+.  +.+++.+|..+..         .++|
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~d~~~~~---------~~~f  262 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGV--EGEVFASNVFSEV---------KGRF  262 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTC---------CSCE
T ss_pred             CCCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCC--CCEEEEccccccc---------cCCe
Confidence            3567999999999999999998865 57999999999999999999998876  3677888886532         4689


Q ss_pred             eEEEEcCCCc--------ccHHHHHHHHhcccCCeEEEEe
Q 029836           98 DFVFVDADKD--------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        98 D~v~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|+++....        ....+++.+.+.|+|||.+++.
T Consensus       263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~  302 (343)
T 2pjd_A          263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (343)
T ss_dssp             EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            9999986522        2467889999999999999874

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.46  E-value=7.2e-13  Score=103.20  Aligned_cols=120  Identities=14%  Similarity=0.162  Sum_probs=90.7

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      ...++..++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.++++++..|+ .+++++++|+.+..+.
T Consensus        90 ~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~~  168 (309)
T 2b9e_A           90 ASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPS  168 (309)
T ss_dssp             GGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTT
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCcc
Confidence            344555566666778999999999999999998765468999999999999999999999998 5899999998765332


Q ss_pred             HhhcccCCCceeEEEEcCCC-------c--cc------------------HHHHHHHHhcccCCeEEEEeCcC
Q 029836           87 LIQDEKYHGTFDFVFVDADK-------D--NY------------------VNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~~-------~--~~------------------~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ...    .++||.|++|++.       .  +.                  ..+++.+.++++ ||.|++..+.
T Consensus       169 ~~~----~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs  236 (309)
T 2b9e_A          169 DPR----YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS  236 (309)
T ss_dssp             CGG----GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred             ccc----cCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence            100    1479999998651       0  10                  134666667776 9999976554

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.46  E-value=1.8e-13  Score=104.02  Aligned_cols=101  Identities=17%  Similarity=0.233  Sum_probs=74.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++++...  -+..+...+.. .....      .+
T Consensus        42 ~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~~--v~~~~~~~~~~-~~~~~------~~  109 (261)
T 3iv6_A           42 NIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADRC--VTIDLLDITAE-IPKEL------AG  109 (261)
T ss_dssp             TCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSSC--CEEEECCTTSC-CCGGG------TT
T ss_pred             CCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhcc--ceeeeeecccc-ccccc------CC
Confidence            4456789999999999999999975   5799999999999999999876541  12333222220 00111      46


Q ss_pred             ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe
Q 029836           96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +||+|+++..     .++....+..+.++| |||.+++.
T Consensus       110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence            8999999864     234566888888999 99999875

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.46  E-value=2.5e-13  Score=106.70  Aligned_cols=103  Identities=12%  Similarity=0.042  Sum_probs=87.1

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v  100 (187)
                      .+|||+|||+|..+..+++..| +.+++++|+ +.+++.+++++...++.++++++.+|..+.   .      .++||+|
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~~~D~v  237 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE---V------PSNGDIY  237 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC---C------CSSCSEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC---C------CCCCCEE
Confidence            8999999999999999999886 689999999 999999999998877777899999998752   2      4579999


Q ss_pred             EEcCCC-----cccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836          101 FVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus       101 ~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      ++....     .....+++.+.+.|+|||.+++.+....
T Consensus       238 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  276 (334)
T 2ip2_A          238 LLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTIS  276 (334)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             EEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            987542     2234889999999999999998876653

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.46  E-value=3.3e-13  Score=100.97  Aligned_cols=108  Identities=13%  Similarity=0.193  Sum_probs=85.0

Q ss_pred             HHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836           10 FFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus        10 ~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      ++..+... .++.+|||+|||+|..+..++..   +.+++++|+++.+++.++++.    ...+++++++|..+..  + 
T Consensus        43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~--~-  112 (242)
T 3l8d_A           43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLP--F-  112 (242)
T ss_dssp             HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCS--S-
T ss_pred             HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCC--C-
Confidence            33444433 35679999999999999999986   569999999999999888764    2368999999987541  1 


Q ss_pred             hcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           89 QDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                          ..++||+|++...   ..+...+++.+.+.|+|||++++...
T Consensus       113 ----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          113 ----ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             ----CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEc
Confidence                1568999998764   34567899999999999999998764

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.46  E-value=6.9e-13  Score=102.38  Aligned_cols=108  Identities=13%  Similarity=0.124  Sum_probs=77.0

Q ss_pred             CCCEEEEEcccccHHHHHHH----hhCCCCCEE--EEEeCCchHHHHHHHHHHHc-CCCCce--EEEeCCchHHHHHHhh
Q 029836           19 NAKNTMEIGVFTGYSLLATA----LAIPDDGKI--LALDITKEHYEKGLPIIQKA-GVAHKI--DFREGPALPLLDQLIQ   89 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~----~~~~~~~~v--~~vd~~~~~~~~a~~~~~~~-~~~~~i--~~~~~d~~~~l~~~~~   89 (187)
                      ++.+|||||||+|..+..++    ...+ ..++  +++|+++++++.|++++... +. +++  .+..+++.++......
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~-~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~  129 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYP-GVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRMLE  129 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHST-TCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCC-CceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhcc
Confidence            35699999999998766543    3333 4544  99999999999999998764 33 444  4456777554321100


Q ss_pred             cccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEe
Q 029836           90 DEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       +..+++||+|++...   ..+....++++.++|||||.+++.
T Consensus       130 -~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  171 (292)
T 2aot_A          130 -KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII  171 (292)
T ss_dssp             -TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEE
Confidence             001468999998754   456788999999999999999985

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.46  E-value=1.3e-12  Score=100.13  Aligned_cols=111  Identities=9%  Similarity=-0.005  Sum_probs=83.4

Q ss_pred             CCCEEEEEcccc---cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH--hh--cc
Q 029836           19 NAKNTMEIGVFT---GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL--IQ--DE   91 (187)
Q Consensus        19 ~~~~vLeiG~g~---G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~--~~--~~   91 (187)
                      ...+|||||||+   |..+..+.+..+ +.+|+++|+++.+++.|++++..   ..+++++++|..+....+  ..  +.
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~  152 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRM  152 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhcc
Confidence            457999999999   988766666555 68999999999999999998843   268999999987532110  00  00


Q ss_pred             cCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           92 KYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        92 ~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .+.++||+|++...     .+....+++++.+.|+|||+|++.+...
T Consensus       153 ~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          153 IDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             CCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             CCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            01257999998753     2246789999999999999999987654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.45  E-value=3.8e-13  Score=95.49  Aligned_cols=99  Identities=15%  Similarity=0.114  Sum_probs=75.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH-----HHHhhcc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL-----DQLIQDE   91 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l-----~~~~~~~   91 (187)
                      ..++.+|||+|||+|..+..+++.++++.+++++|+++ +++.           .++++.++|..+..     +...   
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~---   84 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERV---   84 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHH---
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccC---
Confidence            34567999999999999999998864468999999999 6532           57999999986641     1111   


Q ss_pred             cCCCceeEEEEcCCCc---cc-----------HHHHHHHHhcccCCeEEEEeCc
Q 029836           92 KYHGTFDFVFVDADKD---NY-----------VNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~---~~-----------~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                       ..++||+|+++....   ..           ..+++.+.++|+|||.+++...
T Consensus        85 -~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           85 -GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             -TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence             146899999976521   11           5788999999999999997543

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.45  E-value=8.3e-13  Score=102.88  Aligned_cols=108  Identities=14%  Similarity=0.095  Sum_probs=82.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC------CCCceEEEeCCchHHH--HHHhhc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG------VAHKIDFREGPALPLL--DQLIQD   90 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~------~~~~i~~~~~d~~~~l--~~~~~~   90 (187)
                      ++.+|||+|||+|..+..+++. + ..+++++|+++.+++.++++....+      ...+++++++|..+..  ..+...
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  111 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-R-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP  111 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence            6789999999999999998874 3 5799999999999999999887652      2257999999987642  011100


Q ss_pred             ccCCCceeEEEEcCCC-------cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           91 EKYHGTFDFVFVDADK-------DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                         .++||+|++....       .....+++.+.+.|+|||++++...
T Consensus       112 ---~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          112 ---QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             ---TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ---CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence               3489999987542       2235889999999999999998643

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.45  E-value=1.8e-12  Score=99.70  Aligned_cols=115  Identities=16%  Similarity=0.031  Sum_probs=80.5

Q ss_pred             HHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchHHHHHHHHH-----HHcCCC----Cce
Q 029836            7 EAQFFSMLLKL---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDI-TKEHYEKGLPII-----QKAGVA----HKI   73 (187)
Q Consensus         7 ~~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~-~~~~~~~a~~~~-----~~~~~~----~~i   73 (187)
                      ...+...+...   .++++|||+|||+|..++.+++. + ..+|+++|+ ++.+++.+++++     +..++.    +++
T Consensus        64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v  141 (281)
T 3bzb_A           64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASP  141 (281)
T ss_dssp             HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCC
T ss_pred             HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCe
Confidence            44445555433   46789999999999999988875 2 359999999 899999999999     555553    478


Q ss_pred             EEEeCCchH----HHHHHhhcccCCCceeEEEE-cCC--CcccHHHHHHHHhccc---C--CeEEEE
Q 029836           74 DFREGPALP----LLDQLIQDEKYHGTFDFVFV-DAD--KDNYVNYHKRLIELVK---V--GGVIGY  128 (187)
Q Consensus        74 ~~~~~d~~~----~l~~~~~~~~~~~~~D~v~~-d~~--~~~~~~~~~~~~~~L~---~--gG~lv~  128 (187)
                      ++...+..+    ....+.     .++||+|++ |..  ......+++.+.++|+   |  ||.+++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~-----~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          142 KVVPYRWGDSPDSLQRCTG-----LQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             EEEECCTTSCTHHHHHHHS-----CSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             EEEEecCCCccHHHHhhcc-----CCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            887554322    222111     468999987 443  3457789999999999   9  997654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.45  E-value=3.9e-13  Score=100.34  Aligned_cols=98  Identities=13%  Similarity=0.141  Sum_probs=79.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++..   .+++++|+++.+++.+++++      ++++++++|..+...        .++|
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~--------~~~~  101 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRL--------GRKF  101 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCC--------SSCE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHccc--------CCCC
Confidence            456899999999999999999874   38999999999999998864      468999999865421        4689


Q ss_pred             eEEEEcCC-------CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           98 DFVFVDAD-------KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        98 D~v~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |+|++...       ......+++.+.++|+|||.++++...
T Consensus       102 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (239)
T 3bxo_A          102 SAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW  143 (239)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             cEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            99995332       134568899999999999999997643

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.44  E-value=8.3e-13  Score=95.26  Aligned_cols=104  Identities=9%  Similarity=0.027  Sum_probs=81.7

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      .++..+  ..++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++      .+++++++|..+..  +.
T Consensus        38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~--~~  104 (195)
T 3cgg_A           38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQ--IS  104 (195)
T ss_dssp             HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSC--CC
T ss_pred             HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCC--CC
Confidence            344444  346789999999999999999876   469999999999999998866      36889999987531  10


Q ss_pred             hcccCCCceeEEEEcCC-C-----cccHHHHHHHHhcccCCeEEEEeC
Q 029836           89 QDEKYHGTFDFVFVDAD-K-----DNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~-~-----~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                           .++||+|++.+. .     .....+++.+.+.|+|||.+++..
T Consensus       105 -----~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~  147 (195)
T 3cgg_A          105 -----ETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGF  147 (195)
T ss_dssp             -----CCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -----CCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence                 468999999743 1     234778999999999999999854

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.44  E-value=2.4e-13  Score=99.88  Aligned_cols=96  Identities=15%  Similarity=0.161  Sum_probs=77.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..+    + ..+++++|+++.+++.++++.      .+++++++|..+. + .     ..++||
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~-----~~~~fD   97 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEAL-P-F-----PGESFD   97 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSC-C-S-----CSSCEE
T ss_pred             CCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccC-C-C-----CCCcEE
Confidence            6789999999999988776    2 248999999999999998876      4788999988653 2 1     146899


Q ss_pred             EEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           99 FVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        99 ~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|++...   ..+...+++.+.++|+|||.+++....
T Consensus        98 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A           98 VVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             EEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecC
Confidence            9998765   345678999999999999999987644

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.44  E-value=1.3e-12  Score=106.19  Aligned_cols=115  Identities=12%  Similarity=0.133  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            7 EAQFFSMLLKL---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         7 ~~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      ...++..++..   .+..+|||+|||+|..+..+++.   ..+|+++|+++.+++.|++|++.+++ ++++++++|+.+.
T Consensus       271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~f~~~d~~~~  346 (433)
T 1uwv_A          271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEED  346 (433)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSC
T ss_pred             HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEECCHHHH
Confidence            44455555443   35679999999999999999976   57999999999999999999999888 4899999999875


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++.+...   .++||+|++|++.....+.++.+. .++|++++.++
T Consensus       347 l~~~~~~---~~~fD~Vv~dPPr~g~~~~~~~l~-~~~p~~ivyvs  388 (433)
T 1uwv_A          347 VTKQPWA---KNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVS  388 (433)
T ss_dssp             CSSSGGG---TTCCSEEEECCCTTCCHHHHHHHH-HHCCSEEEEEE
T ss_pred             hhhhhhh---cCCCCEEEECCCCccHHHHHHHHH-hcCCCeEEEEE
Confidence            4431100   458999999998666666666554 47899988764

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.42  E-value=2.3e-13  Score=99.84  Aligned_cols=110  Identities=11%  Similarity=0.055  Sum_probs=84.0

Q ss_pred             HHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836           10 FFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus        10 ~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      +...+... .++.+|||+|||+|..+..+++..+  .+++++|+++.+++.++++...   .+++++.++|+.+. + +.
T Consensus        32 ~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~-~-~~  104 (215)
T 2pxx_A           32 FRALLEPELRPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKL-D-FP  104 (215)
T ss_dssp             HHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSC-C-SC
T ss_pred             HHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcC-C-CC
Confidence            33334333 4567999999999999999998632  3899999999999999988764   25899999998654 1 11


Q ss_pred             hcccCCCceeEEEEcCC------------------CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           89 QDEKYHGTFDFVFVDAD------------------KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~------------------~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                           .++||+|++...                  ......+++.+.++|+|||.+++.+.
T Consensus       105 -----~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A          105 -----SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             -----SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             -----CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence                 468999997543                  12346788999999999999998543

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.42  E-value=3.6e-12  Score=92.89  Aligned_cols=107  Identities=15%  Similarity=0.207  Sum_probs=79.2

Q ss_pred             CCHHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836            3 TSPDEAQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP   79 (187)
Q Consensus         3 ~~~~~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d   79 (187)
                      +++...+.+..++.   ..++.+|||+|||+|..+..++.. + ..+++++|+++.+++.++++++      +++++++|
T Consensus        32 ~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d  103 (200)
T 1ne2_A           32 TDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG------GVNFMVAD  103 (200)
T ss_dssp             CCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT------TSEEEECC
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcC------CCEEEECc
Confidence            33444444444443   236689999999999999999876 3 4689999999999999998774      78999999


Q ss_pred             chHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe
Q 029836           80 ALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.++          .++||+|+++++     ......+++.+.+.+  |+++++.
T Consensus       104 ~~~~----------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~  146 (200)
T 1ne2_A          104 VSEI----------SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIG  146 (200)
T ss_dssp             GGGC----------CCCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEE
T ss_pred             HHHC----------CCCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEE
Confidence            8763          358999999976     122457888888887  6655543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.42  E-value=8.1e-13  Score=100.28  Aligned_cols=95  Identities=19%  Similarity=0.130  Sum_probs=76.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..+++.   +.+++++|+++.+++.++++..     .+  ++++|+.+. + +.     .++||
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~-~-~~-----~~~fD  116 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDL-P-FP-----SGAFE  116 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSC-C-SC-----TTCEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHC-C-CC-----CCCEE
Confidence            6789999999999999999875   4699999999999999988653     12  777887653 2 11     46899


Q ss_pred             EEEEcCC----CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           99 FVFVDAD----KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        99 ~v~~d~~----~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|++...    ..+...+++.+.+.|+|||.+++..
T Consensus       117 ~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          117 AVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV  152 (260)
T ss_dssp             EEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEe
Confidence            9998653    3457889999999999999999754

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.41  E-value=2.8e-13  Score=102.59  Aligned_cols=110  Identities=16%  Similarity=0.069  Sum_probs=82.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC----------------------------
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV----------------------------   69 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~----------------------------   69 (187)
                      .++.+|||+|||+|..+..++....  .+|+++|+++.+++.++++++..+.                            
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            3457999999999999988876521  4899999999999999998865421                            


Q ss_pred             CCce-EEEeCCchHHHHHHhhcccCCCceeEEEEcCCC-----c--ccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           70 AHKI-DFREGPALPLLDQLIQDEKYHGTFDFVFVDADK-----D--NYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        70 ~~~i-~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~-----~--~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ..++ ++.++|..+..+.. ..  ..++||+|++....     .  ....+++.+.++|+|||++++.+..
T Consensus       133 ~~~v~~~~~~d~~~~~~~~-~~--~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLG-GV--SLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTT-TC--CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhhheeEEEeeeccCCCCC-cc--ccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence            0127 89999987643211 00  02689999987542     2  5677899999999999999987644

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.38  E-value=2.5e-12  Score=97.85  Aligned_cols=96  Identities=21%  Similarity=0.224  Sum_probs=77.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++.++ +.+++++|+++.+++.++++.      .++.+..+|+.+. + +     ..++|
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~-----~~~~f  149 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-P-F-----SDTSM  149 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-S-B-----CTTCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhC-C-C-----CCCce
Confidence            4578999999999999999998875 679999999999999988764      4688999988643 2 1     14689


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |+|+.....    ..++.+.++|+|||.+++...
T Consensus       150 D~v~~~~~~----~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          150 DAIIRIYAP----CKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             EEEEEESCC----CCHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEeCCh----hhHHHHHHhcCCCcEEEEEEc
Confidence            999975542    357888999999999988643

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=99.38  E-value=2.7e-11  Score=91.50  Aligned_cols=149  Identities=11%  Similarity=0.019  Sum_probs=103.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhh------CCCCCEEEEEe-----CCch-------------------HHHHHHHH----
Q 029836           18 INAKNTMEIGVFTGYSLLATALA------IPDDGKILALD-----ITKE-------------------HYEKGLPI----   63 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~------~~~~~~v~~vd-----~~~~-------------------~~~~a~~~----   63 (187)
                      .-|..|+|+|+..|.++..++..      .....+++++|     +.+.                   ..+..++.    
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            44779999999999999987652      12357899999     3321                   01112222    


Q ss_pred             --HHHcCC-CCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC-cccHHHHHHHHhcccCCeEEEEeCcCCCccccC
Q 029836           64 --IQKAGV-AHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK-DNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVA  139 (187)
Q Consensus        64 --~~~~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~-~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~  139 (187)
                        .+..+. .++++++.|++.+.++.+.++.. .+++|+|++|++. +.+...++.+.++|+|||+|++||+.+.+    
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~-~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~----  222 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENP-QTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPK----  222 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCT-TCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCTT----
T ss_pred             hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCC-CCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCCC----
Confidence              223455 38999999999999998754421 3479999999985 55677899999999999999999975321    


Q ss_pred             CCCCCchhhhhhHHHHHHHHHHHHhcCCCeeEEEeecCCeeEEEE
Q 029836          140 PPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVTLCR  184 (187)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~G~~i~~  184 (187)
                        +       .    .+++..+.+..........+|+..+...++
T Consensus       223 --w-------~----G~~~A~~ef~~~~~~~i~~~p~~~~~~y~~  254 (257)
T 3tos_A          223 --W-------P----GENIAMRKVLGLDHAPLRLLPGRPAPAYLR  254 (257)
T ss_dssp             --C-------T----HHHHHHHHHTCTTSSCCEECTTCSCCEEEE
T ss_pred             --C-------h----HHHHHHHHHHhhCCCeEEEccCCCCCEEEE
Confidence              1       1    233344444556677888889888776543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.37  E-value=2.1e-13  Score=103.91  Aligned_cols=109  Identities=18%  Similarity=0.040  Sum_probs=77.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC----------------------------
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA----------------------------   70 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~----------------------------   70 (187)
                      ++.+|||||||+|..+..++...  ..+|+++|+++.+++.|+++++.....                            
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            55799999999998766555431  247999999999999999987654210                            


Q ss_pred             CceE-EEeCCchHHHHHHhhcccCCCceeEEEEcCC-------CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           71 HKID-FREGPALPLLDQLIQDEKYHGTFDFVFVDAD-------KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        71 ~~i~-~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .+++ ++++|..+..+-. ..  ..++||+|+....       .+++...+..+.++|||||.+++.+..
T Consensus       133 ~~i~~~~~~D~~~~~~~~-~~--~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPLA-PA--VLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             HHEEEEEECCTTSSSTTT-TC--CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhhheEEeccccCCCCCC-cc--ccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence            1243 7788876532200 00  0468999998643       134567889999999999999998654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.37  E-value=4.1e-12  Score=92.49  Aligned_cols=99  Identities=15%  Similarity=0.166  Sum_probs=71.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH------------
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL------------   84 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l------------   84 (187)
                      .+..+|||+|||+|.++..+++.+++ .++|+++|+++..           .. ++++++++|+.+..            
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhcccccccc
Confidence            45679999999999999999988763 5899999999842           12 57889999886532            


Q ss_pred             -------HHHhhcccCCCceeEEEEcCCCcc-------c-------HHHHHHHHhcccCCeEEEEe
Q 029836           85 -------DQLIQDEKYHGTFDFVFVDADKDN-------Y-------VNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        85 -------~~~~~~~~~~~~~D~v~~d~~~~~-------~-------~~~~~~~~~~L~~gG~lv~~  129 (187)
                             +.+... ...++||+|+++.....       .       ...++.+.++|+|||.+++.
T Consensus        89 ~~~~~~~~~~~~~-~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~  153 (201)
T 2plw_A           89 MNNNSVDYKLKEI-LQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK  153 (201)
T ss_dssp             ---CHHHHHHHHH-HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccchhhHHHHHhh-cCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence                   010000 01468999999864211       1       13677889999999999974

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=99.36  E-value=3.2e-12  Score=101.15  Aligned_cols=107  Identities=13%  Similarity=0.132  Sum_probs=85.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC---C----CCceEEEeCCchHHHHHHhhc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG---V----AHKIDFREGPALPLLDQLIQD   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~---~----~~~i~~~~~d~~~~l~~~~~~   90 (187)
                      .+|++||-||.|.|..+.++++. + ..+++.||+++..++.+++.+....   .    .++++++.+|+.+++....++
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence            35789999999999999999986 4 4799999999999999999875321   1    146899999999998765433


Q ss_pred             ccCCCceeEEEEcCCC-------------cccHHHHHHHHhcccCCeEEEEe
Q 029836           91 EKYHGTFDFVFVDADK-------------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~-------------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                         .++||+|++|...             ....++++.+.+.|+|||+++..
T Consensus       282 ---~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q  330 (381)
T 3c6k_A          282 ---GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ  330 (381)
T ss_dssp             ---TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ---cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence               4689999999531             11257889999999999999863

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.36  E-value=3.4e-12  Score=96.86  Aligned_cols=108  Identities=19%  Similarity=0.144  Sum_probs=79.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhh-------CCC----CCEEEEEeCCc--------------hHHHHHHHHHHHcC-----
Q 029836           19 NAKNTMEIGVFTGYSLLATALA-------IPD----DGKILALDITK--------------EHYEKGLPIIQKAG-----   68 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~-------~~~----~~~v~~vd~~~--------------~~~~~a~~~~~~~~-----   68 (187)
                      ++.+|||||+|+|++++.+++.       .|.    ..+++++|..|              +....++++++...     
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4469999999999999987765       342    25899999987              34446777766521     


Q ss_pred             -----CC---CceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc------ccHHHHHHHHhcccCCeEEEE
Q 029836           69 -----VA---HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        69 -----~~---~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                           +.   .+++++.+|+.+.++.+....  ...||+||+|+...      -..++|+.+.++|+|||+++.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~--~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSL--NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGG--TTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhccccc--CCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                 11   467899999999887652110  13799999998521      157899999999999999984

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.35  E-value=3.3e-12  Score=100.86  Aligned_cols=116  Identities=13%  Similarity=0.037  Sum_probs=89.1

Q ss_pred             CHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCC----CEEEEEeCCchHHHHHHHHHHHcCCCCceEE
Q 029836            4 SPDEAQFFSMLLK----LINAKNTMEIGVFTGYSLLATALAIPDD----GKILALDITKEHYEKGLPIIQKAGVAHKIDF   75 (187)
Q Consensus         4 ~~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~~~~l~~~~~~~----~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~   75 (187)
                      +.....++..++.    ..++.+|||+|||+|..+..+++.++..    .+++++|+++.+++.|+.++...+.  ++.+
T Consensus       111 P~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i  188 (344)
T 2f8l_A          111 PDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTL  188 (344)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEE
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceE
Confidence            3445555555543    2245799999999999999998876532    7899999999999999999998876  6889


Q ss_pred             EeCCchHHHHHHhhcccCCCceeEEEEcCCCcc---------------------cHHHHHHHHhcccCCeEEEEe
Q 029836           76 REGPALPLLDQLIQDEKYHGTFDFVFVDADKDN---------------------YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        76 ~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~---------------------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +++|+....+        .++||+|+.+++...                     ...+++.+.+.|+|||++++.
T Consensus       189 ~~~D~l~~~~--------~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v  255 (344)
T 2f8l_A          189 LHQDGLANLL--------VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL  255 (344)
T ss_dssp             EESCTTSCCC--------CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EECCCCCccc--------cCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence            9999875321        468999999976110                     125789999999999988763

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.35  E-value=2.9e-12  Score=98.69  Aligned_cols=111  Identities=11%  Similarity=-0.030  Sum_probs=75.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC-----------------CC-----------
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG-----------------VA-----------   70 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~-----------------~~-----------   70 (187)
                      ++.+|||||||+|.....++.. + ..+|+++|+++.+++.|+++++...                 ..           
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACS-H-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGG-G-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhcc-C-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            5689999999999954433332 2 4699999999999999988664321                 00           


Q ss_pred             -CceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC-------cccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           71 -HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK-------DNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        71 -~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                       ..++++++|+.+.++-- +.....++||+|++...-       .+...+++.+.++|||||++++.+..
T Consensus       149 ~~~~~~~~~D~~~~~~~~-~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~  217 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPLG-AGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL  217 (289)
T ss_dssp             HHEEEEECCCTTSSSTTC-SSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             hhhceEEecccCCCCCcc-ccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence             01456777776532210 000003569999987651       24678899999999999999987543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.34  E-value=9.6e-12  Score=93.61  Aligned_cols=154  Identities=10%  Similarity=-0.025  Sum_probs=102.3

Q ss_pred             HHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836            9 QFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus         9 ~~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      .|...+... ..|.+|||||||.|-++..++...+ ..+++++|+++.+++.+++++..+|.  +.++.+.|.....+  
T Consensus       121 ~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~~g~--~~~~~v~D~~~~~p--  195 (281)
T 3lcv_B          121 EFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTRLNV--PHRTNVADLLEDRL--  195 (281)
T ss_dssp             HHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHHTTC--CEEEEECCTTTSCC--
T ss_pred             HHHHHHHhccCCCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeecccCC--
Confidence            333334433 4588999999999999999887654 79999999999999999999999987  37788887764433  


Q ss_pred             hhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHH
Q 029836           88 IQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKA  162 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (187)
                            .++||++++.-.     .+.....+ .+...|+++|++|--+.-   .+..        ....+.....+..+.
T Consensus       196 ------~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~k---sl~G--------rs~gm~~~Y~~~~e~  257 (281)
T 3lcv_B          196 ------DEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTK---SLGQ--------RSKGMFQNYSQSFES  257 (281)
T ss_dssp             ------CSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC------------------CHHHHHHHHHHH
T ss_pred             ------CCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccch---hhcC--------CCcchhhHHHHHHHH
Confidence                  578999988644     12222344 678899999999854331   1111        112333333444334


Q ss_pred             HhcCCCeeEEEeecCCeeEEEEE
Q 029836          163 LAVDPRIEICQISIADGVTLCRR  185 (187)
Q Consensus       163 ~~~~~~~~~~~~p~~~G~~i~~k  185 (187)
                      ...+.++....+-+++-+..+.+
T Consensus       258 ~~~~~g~~~~~~~~~nEl~y~i~  280 (281)
T 3lcv_B          258 QARERSCRIQRLEIGNELIYVIQ  280 (281)
T ss_dssp             HHHHHTCCEEEEEETTEEEEEEC
T ss_pred             HHHhcCCceeeeeecCeeEEEec
Confidence            33334556666777777666554

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.34  E-value=3.8e-12  Score=94.15  Aligned_cols=102  Identities=20%  Similarity=0.185  Sum_probs=79.3

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      ..+..+....++.+|||+|||+|..+..++..       +++|+++.+++.++++        +++++++|..+. + . 
T Consensus        37 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~-   98 (219)
T 1vlm_A           37 SELQAVKCLLPEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--------GVFVLKGTAENL-P-L-   98 (219)
T ss_dssp             HHHHHHHHHCCSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--------TCEEEECBTTBC-C-S-
T ss_pred             HHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--------CCEEEEcccccC-C-C-
Confidence            33444555566889999999999998877642       9999999999988875        578888887543 2 1 


Q ss_pred             hcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           89 QDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                          ..++||+|++...   ..+...+++.+.+.|+|||.+++....
T Consensus        99 ----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A           99 ----KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             ----CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ----CCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence                0468999998765   345678999999999999999987543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.33  E-value=1e-11  Score=90.30  Aligned_cols=97  Identities=15%  Similarity=0.134  Sum_probs=69.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhccc--C
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEK--Y   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~--~   93 (187)
                      .++.+|||+|||+|.++..+++.   .++|+++|+++..           .. ++++++++|+.+.  ...+.....  .
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~   88 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALREEG   88 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhccc
Confidence            45689999999999999999876   5899999999852           12 5899999998652  111110000  0


Q ss_pred             CCceeEEEEcCCCcc--------------cHHHHHHHHhcccCCeEEEEe
Q 029836           94 HGTFDFVFVDADKDN--------------YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~--------------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++||+|+.|+.+..              ....++.+.++|||||.+++.
T Consensus        89 ~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k  138 (191)
T 3dou_A           89 IEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK  138 (191)
T ss_dssp             CSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            148999999974210              135677788999999999974

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.33  E-value=1.3e-11  Score=94.09  Aligned_cols=113  Identities=17%  Similarity=0.172  Sum_probs=78.5

Q ss_pred             cCCCEEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           18 INAKNTMEIGVFT--GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g~--G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ....++||||||.  +..+..++....++++|+++|.|+.+++.|++.+...+ ..+++++++|..+.-..+.... ..+
T Consensus        77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~~-~~~  154 (277)
T 3giw_A           77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAPE-LRD  154 (277)
T ss_dssp             SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCHH-HHT
T ss_pred             cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhcccc-ccc
Confidence            4557999999997  44556666544347999999999999999999886543 2579999999977522110000 012


Q ss_pred             cee-----EEEEcCC----Cc--ccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           96 TFD-----FVFVDAD----KD--NYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        96 ~~D-----~v~~d~~----~~--~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .||     .|++...    ..  .....+..+.+.|+|||+|++.+..
T Consensus       155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~  202 (277)
T 3giw_A          155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT  202 (277)
T ss_dssp             TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred             ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence            344     3555443    12  1367899999999999999997654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.33  E-value=8.9e-12  Score=96.04  Aligned_cols=90  Identities=19%  Similarity=0.120  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .+...+.+-..+...++.+|||||||+|..+..+++.   ..+|+++|+++.+++.+++++...+..++++++++|+.+.
T Consensus        13 d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~   89 (285)
T 1zq9_A           13 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT   89 (285)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence            3444444444444556789999999999999999987   4699999999999999999987766656899999999754


Q ss_pred             HHHHhhcccCCCceeEEEEcCC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                       +        ..+||+|+.+.+
T Consensus        90 -~--------~~~fD~vv~nlp  102 (285)
T 1zq9_A           90 -D--------LPFFDTCVANLP  102 (285)
T ss_dssp             -C--------CCCCSEEEEECC
T ss_pred             -c--------chhhcEEEEecC
Confidence             1        347999999765

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.33  E-value=1.9e-12  Score=104.67  Aligned_cols=100  Identities=16%  Similarity=0.185  Sum_probs=73.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||||||+|..+..+++.   +.+++++|+++.+++.|+++    +......++..+..+.++..      +++||
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~------~~~fD  173 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT------EGPAN  173 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH------HCCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC------CCCEE
Confidence            5679999999999999999875   46999999999999988765    33211112221222222211      46899


Q ss_pred             EEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           99 FVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        99 ~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|++...   ..+...+++.+.++|||||++++...
T Consensus       174 ~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          174 VIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             EEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9998765   34678899999999999999998643

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.31  E-value=3.3e-12  Score=94.53  Aligned_cols=98  Identities=15%  Similarity=0.062  Sum_probs=76.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++.   +.+++++|+++.+++.++++.        .++.++|..+....+.     +++|
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~-----~~~f   94 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYE-----EEQF   94 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT---TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSC-----TTCE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCC-----CCcc
Confidence            36789999999999999999876   379999999999998887643        2678888764311111     4689


Q ss_pred             eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |+|++...   ..+...+++.+.+.|+|||.+++...
T Consensus        95 D~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~  131 (230)
T 3cc8_A           95 DCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIP  131 (230)
T ss_dssp             EEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred             CEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            99998764   33457889999999999999998643

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.30  E-value=2.1e-11  Score=88.33  Aligned_cols=100  Identities=10%  Similarity=0.123  Sum_probs=71.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCC--------CEEEEEeCCchHHHHHHHHHHHcCCCCceEEE-eCCchHHHH--H
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDD--------GKILALDITKEHYEKGLPIIQKAGVAHKIDFR-EGPALPLLD--Q   86 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~--------~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~l~--~   86 (187)
                      .++.+|||+|||+|.++..+++.++..        .+|+++|+++..           .. .+++++ ++|..+...  .
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHH
Confidence            456899999999999999999987633        799999999842           12 578888 888754311  1


Q ss_pred             HhhcccCCCceeEEEEcCCCc-------cc-------HHHHHHHHhcccCCeEEEEeC
Q 029836           87 LIQDEKYHGTFDFVFVDADKD-------NY-------VNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~~~-------~~-------~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..... ..++||+|+++....       +.       ..+++.+.++|+|||.+++..
T Consensus        89 ~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           89 ILEVL-PGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HHHHS-GGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhc-CCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            10000 034899999876311       11       367888999999999999864

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.30  E-value=1.3e-12  Score=97.87  Aligned_cols=99  Identities=16%  Similarity=0.073  Sum_probs=67.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-CchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~~   97 (187)
                      ++++|||||||+|..+..+++. + ..+|+++|+++.+++.++++.      +++..... +.........    ....+
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~-g-~~~V~gvDis~~ml~~a~~~~------~~~~~~~~~~~~~~~~~~~----~~~~~  104 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN-G-AKLVYALDVGTNQLAWKIRSD------ERVVVMEQFNFRNAVLADF----EQGRP  104 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSCCCCCHHHHTC------TTEEEECSCCGGGCCGGGC----CSCCC
T ss_pred             CCCEEEEEccCCCHHHHHHHhc-C-CCEEEEEcCCHHHHHHHHHhC------ccccccccceEEEeCHhHc----CcCCC
Confidence            4569999999999999999986 2 359999999999998876643      23332221 2211110100    01135


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |.+.+|........++..+.++|||||.+++.
T Consensus       105 d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          105 SFTSIDVSFISLDLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             SEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             CEEEEEEEhhhHHHHHHHHHHhccCCCEEEEE
Confidence            66666655444578899999999999999873

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.30  E-value=5.8e-12  Score=96.96  Aligned_cols=99  Identities=14%  Similarity=0.003  Sum_probs=71.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEE-eCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFR-EGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ++++|||+|||+|.++..+++. + ..+|+++|+++.+++.+.++      .+++... ..+.....+...    ...+|
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~-g-a~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~ni~~l~~~~l----~~~~f  152 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN-G-AKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYNFRYAEPVDF----TEGLP  152 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSSSCSCHHHHT------CTTEEEECSCCGGGCCGGGC----TTCCC
T ss_pred             cccEEEecCCCccHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHh------CcccceecccCceecchhhC----CCCCC
Confidence            4579999999999999999876 2 47999999999999874331      1344433 234432211110    02359


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++|.........+..+.++|+|||.+++-
T Consensus       153 D~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          153 SFASIDVSFISLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             SEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             CEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence            99999987667788999999999999999874

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.30  E-value=3.3e-12  Score=97.10  Aligned_cols=91  Identities=14%  Similarity=0.182  Sum_probs=73.6

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-------hHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-------EHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~-------~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      .++...+...++.+|||+|||+|..++.++..   +++|+++|+++       .+++.|+++.+.+++.++++++++|+.
T Consensus        73 ~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~  149 (258)
T 2r6z_A           73 ELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAA  149 (258)
T ss_dssp             CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHH
T ss_pred             HHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHH
Confidence            44444445555689999999999999999985   46899999999       999999999888777567999999999


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      ++++.+.+.   .++||+|++|+.
T Consensus       150 ~~l~~~~~~---~~~fD~V~~dP~  170 (258)
T 2r6z_A          150 EQMPALVKT---QGKPDIVYLDPM  170 (258)
T ss_dssp             HHHHHHHHH---HCCCSEEEECCC
T ss_pred             HHHHhhhcc---CCCccEEEECCC
Confidence            887765311   158999999975

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.29  E-value=1.4e-11  Score=95.49  Aligned_cols=90  Identities=18%  Similarity=0.199  Sum_probs=68.9

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      ++...+.+...+...++.+|||||||+|..+..+++.   ..+|+++|+++.+++.+++++...+. ++++++++|+.+.
T Consensus        27 ~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~  102 (299)
T 2h1r_A           27 NPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKT  102 (299)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSS
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhC
Confidence            4455555555555567789999999999999999875   47999999999999999999987776 6899999998754


Q ss_pred             HHHHhhcccCCCceeEEEEcCCC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADK  106 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~  106 (187)
                      .         .++||+|+++.+.
T Consensus       103 ~---------~~~~D~Vv~n~py  116 (299)
T 2h1r_A          103 V---------FPKFDVCTANIPY  116 (299)
T ss_dssp             C---------CCCCSEEEEECCG
T ss_pred             C---------cccCCEEEEcCCc
Confidence            1         3479999998763

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.28  E-value=1.6e-10  Score=86.15  Aligned_cols=149  Identities=9%  Similarity=-0.010  Sum_probs=97.1

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh
Q 029836           10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ   89 (187)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~   89 (187)
                      +...+.....|.+|||+|||+|..+..+.   + ..+++++|+++.+++.+++++...+  .+.++.++|.....+    
T Consensus        96 fY~~i~~~~~p~~VLDlGCG~gpLal~~~---~-~~~y~a~DId~~~i~~ar~~~~~~g--~~~~~~v~D~~~~~~----  165 (253)
T 3frh_A           96 LYDFIFSAETPRRVLDIACGLNPLALYER---G-IASVWGCDIHQGLGDVITPFAREKD--WDFTFALQDVLCAPP----  165 (253)
T ss_dssp             HHHHHTSSCCCSEEEEETCTTTHHHHHHT---T-CSEEEEEESBHHHHHHHHHHHHHTT--CEEEEEECCTTTSCC----
T ss_pred             HHHHHhcCCCCCeEEEecCCccHHHHHhc---c-CCeEEEEeCCHHHHHHHHHHHHhcC--CCceEEEeecccCCC----
Confidence            33334444568899999999999988777   3 7899999999999999999998877  478888888865433    


Q ss_pred             cccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCC-CccccCCCCCCchhhhhhHHHHH-HHHHHH
Q 029836           90 DEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW-GGSVVAPPDADLDEHFLYLRDFV-QELNKA  162 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  162 (187)
                          .++||+|++--.     .+.....+ .+...|++++++|--++-. .|.-            ..+.... ..|.+.
T Consensus       166 ----~~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfPtksl~Gr~------------~gm~~~Y~~~~e~~  228 (253)
T 3frh_A          166 ----AEAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFPTRSLGGRG------------KGMEANYAAWFEGG  228 (253)
T ss_dssp             ----CCBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEECC-----------------------CHHHHHHHH
T ss_pred             ----CCCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcChHHhcCCC------------cchhhHHHHHHHHH
Confidence                568999987632     12222333 6667999999998544211 1110            1111222 233333


Q ss_pred             HhcCCCeeEEEeecCCeeEEEEEc
Q 029836          163 LAVDPRIEICQISIADGVTLCRRI  186 (187)
Q Consensus       163 ~~~~~~~~~~~~p~~~G~~i~~k~  186 (187)
                      + ....+..-.+-+++-+....++
T Consensus       229 ~-~~~~~~~~~~~~~nEl~~~i~~  251 (253)
T 3frh_A          229 L-PAEFEIEDKKTIGTELIYLIKK  251 (253)
T ss_dssp             S-CTTEEEEEEEEETTEEEEEEEE
T ss_pred             h-hccchhhhheecCceEEEEEec
Confidence            4 3444555566788887776665

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.27  E-value=3.9e-12  Score=100.60  Aligned_cols=104  Identities=15%  Similarity=0.057  Sum_probs=79.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+..+|||||||+|..+..+++.++ +.+++++|+ +..+.  +++.+..+..++++++.+|+.+.+         . +|
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~---------p-~~  248 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREV---------P-HA  248 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCC---------C-CC
T ss_pred             cCCceEEEECCccCHHHHHHHHHCC-CCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCC---------C-CC
Confidence            3467999999999999999999887 689999999 44443  333444455578999999986321         3 79


Q ss_pred             eEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           98 DFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        98 D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      |+|++...-     .....+++++.+.|||||.+++.+.....
T Consensus       249 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~  291 (348)
T 3lst_A          249 DVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPE  291 (348)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred             cEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            999986541     22368899999999999999987765543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.27  E-value=1.2e-11  Score=98.55  Aligned_cols=97  Identities=10%  Similarity=0.091  Sum_probs=77.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      +..+|||||||+|..+..+++.+| ..+++++|+ +.+++.+++       .++++++.+|+.+.++         .. |
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~p---------~~-D  263 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYP-SINAINFDL-PHVIQDAPA-------FSGVEHLGGDMFDGVP---------KG-D  263 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTTCCC---------CC-S
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeh-HHHHHhhhh-------cCCCEEEecCCCCCCC---------CC-C
Confidence            457999999999999999999987 689999999 887766543       2589999999875322         23 9


Q ss_pred             EEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           99 FVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        99 ~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      +|++...-     +....+++++.+.|+|||.+++.+....
T Consensus       264 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  304 (368)
T 3reo_A          264 AIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILP  304 (368)
T ss_dssp             EEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred             EEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            99886541     2345789999999999999998877654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.27  E-value=3.2e-11  Score=88.71  Aligned_cols=95  Identities=9%  Similarity=0.052  Sum_probs=72.3

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      .++..+....++.+|||+|||+|..+..++      .+++++|+++.                ++++.++|..+. + + 
T Consensus        57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------------~~~~~~~d~~~~-~-~-  111 (215)
T 2zfu_A           57 RIARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL----------------DPRVTVCDMAQV-P-L-  111 (215)
T ss_dssp             HHHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------------STTEEESCTTSC-S-C-
T ss_pred             HHHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------------CceEEEeccccC-C-C-
Confidence            455555555567899999999999887662      57999999986                456778887652 1 1 


Q ss_pred             hcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           89 QDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                          ..++||+|++...  ..+...+++.+.++|+|||.+++.+..
T Consensus       112 ----~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~  153 (215)
T 2zfu_A          112 ----EDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVS  153 (215)
T ss_dssp             ----CTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             ----CCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence                1468999998754  356688999999999999999987543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.26  E-value=2.1e-11  Score=97.90  Aligned_cols=115  Identities=14%  Similarity=0.064  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-------------------------------------CCEE
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPD-------------------------------------DGKI   47 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~-------------------------------------~~~v   47 (187)
                      +.....+-.++...+...+||.+||+|.++++++.....                                     ..+|
T Consensus       187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  266 (393)
T 3k0b_A          187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI  266 (393)
T ss_dssp             HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence            334444444444556779999999999999887754321                                     1569


Q ss_pred             EEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC-------cccHHHHHHHHhcc
Q 029836           48 LALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK-------DNYVNYHKRLIELV  120 (187)
Q Consensus        48 ~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~-------~~~~~~~~~~~~~L  120 (187)
                      +++|+++.+++.|++|+..+|+.+++++.++|+.+...        .++||+|+++++.       .....++..+.+.|
T Consensus       267 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~--------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~l  338 (393)
T 3k0b_A          267 IGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT--------EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVY  338 (393)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC--------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC--------CCCCCEEEECCCCccccCCchhHHHHHHHHHHHH
Confidence            99999999999999999999998889999999976532        4589999999873       22334555555555


Q ss_pred             cC--CeEEE
Q 029836          121 KV--GGVIG  127 (187)
Q Consensus       121 ~~--gG~lv  127 (187)
                      ++  |+.+.
T Consensus       339 k~~~g~~~~  347 (393)
T 3k0b_A          339 KRMPTWSVY  347 (393)
T ss_dssp             HTCTTCEEE
T ss_pred             hcCCCCEEE
Confidence            54  66554

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.26  E-value=1.5e-11  Score=99.34  Aligned_cols=107  Identities=17%  Similarity=0.199  Sum_probs=80.8

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .+...+++..++...++.+|||+|||+|..+..+++..+...+++++|+++.+++.|          .+++++++|..+.
T Consensus        24 P~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~   93 (421)
T 2ih2_A           24 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLW   93 (421)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGC
T ss_pred             CHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhc
Confidence            344455555554434567999999999999999998753368999999999998766          4789999998765


Q ss_pred             HHHHhhcccCCCceeEEEEcCCC---cc-----------------------------cHHHHHHHHhcccCCeEEEE
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADK---DN-----------------------------YVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~---~~-----------------------------~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+        .++||+|+.+++.   ..                             +..+++.+.++|++||.+++
T Consensus        94 ~~--------~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~  162 (421)
T 2ih2_A           94 EP--------GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  162 (421)
T ss_dssp             CC--------SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             Cc--------cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEE
Confidence            32        4689999997651   11                             12568888999999998876

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.26  E-value=1.2e-11  Score=99.29  Aligned_cols=77  Identities=12%  Similarity=0.102  Sum_probs=67.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc--CCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA--GVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      +.+|||+|||+|..++.+++.   +.+|+++|+++.+++.|++|++.+  |+ ++++++++|+.++++...     .++|
T Consensus        94 g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~-----~~~f  164 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIK-----TFHP  164 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHH-----HHCC
T ss_pred             CCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhcc-----CCCc
Confidence            689999999999999998875   479999999999999999999988  77 789999999998766532     3589


Q ss_pred             eEEEEcCC
Q 029836           98 DFVFVDAD  105 (187)
Q Consensus        98 D~v~~d~~  105 (187)
                      |+||+|++
T Consensus       165 DvV~lDPP  172 (410)
T 3ll7_A          165 DYIYVDPA  172 (410)
T ss_dssp             SEEEECCE
T ss_pred             eEEEECCC
Confidence            99999975

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.25  E-value=1e-11  Score=95.12  Aligned_cols=104  Identities=24%  Similarity=0.281  Sum_probs=75.7

Q ss_pred             CCCEEEEEcccccH----HHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHH-----------------------cC
Q 029836           19 NAKNTMEIGVFTGY----SLLATALAIPD---DGKILALDITKEHYEKGLPIIQK-----------------------AG   68 (187)
Q Consensus        19 ~~~~vLeiG~g~G~----~~~~l~~~~~~---~~~v~~vd~~~~~~~~a~~~~~~-----------------------~~   68 (187)
                      ++.+|+|+|||+|.    ++..+++.++.   +.+|+++|+|+.+++.|+++...                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45699999999998    44555655442   35899999999999999986410                       00


Q ss_pred             -------CCCceEEEeCCchHH-HHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe
Q 029836           69 -------VAHKIDFREGPALPL-LDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        69 -------~~~~i~~~~~d~~~~-l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                             +..+++|.++|..+. ++ .      .++||+|++...     .+.....++.+.+.|+|||+|++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~-~------~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYN-V------PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCC-C------CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCC-c------CCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                   013689999998752 11 0      358999999654     223467899999999999999973

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.25  E-value=1.5e-11  Score=98.51  Aligned_cols=111  Identities=19%  Similarity=0.141  Sum_probs=82.0

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC-------------------------------------CCCEEEEEe
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIP-------------------------------------DDGKILALD   51 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~-------------------------------------~~~~v~~vd   51 (187)
                      ..+-.++...+...+||.+||+|..+++++....                                     ...+|+++|
T Consensus       185 a~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvD  264 (385)
T 3ldu_A          185 AGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYD  264 (385)
T ss_dssp             HHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEE
T ss_pred             HHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEE
Confidence            3333333445567999999999999999876532                                     115799999


Q ss_pred             CCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC-------cccHHHHHHHHhcccC--
Q 029836           52 ITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK-------DNYVNYHKRLIELVKV--  122 (187)
Q Consensus        52 ~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~-------~~~~~~~~~~~~~L~~--  122 (187)
                      +++.+++.|++|+..+++.+++++.++|+.+...        .++||+|+++++.       .....++..+.+.|++  
T Consensus       265 id~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~--------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~  336 (385)
T 3ldu_A          265 IDEESIDIARENAEIAGVDEYIEFNVGDATQFKS--------EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLK  336 (385)
T ss_dssp             SCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC--------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSB
T ss_pred             CCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc--------CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999997789999999987532        4589999999873       2234455555555554  


Q ss_pred             CeEEE
Q 029836          123 GGVIG  127 (187)
Q Consensus       123 gG~lv  127 (187)
                      |+.+.
T Consensus       337 g~~~~  341 (385)
T 3ldu_A          337 NWSYY  341 (385)
T ss_dssp             SCEEE
T ss_pred             CCEEE
Confidence            65444

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.25  E-value=3.7e-11  Score=96.16  Aligned_cols=115  Identities=9%  Similarity=-0.023  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-------------------------------------CCEE
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPD-------------------------------------DGKI   47 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~-------------------------------------~~~v   47 (187)
                      +.....+-.++...+...+||.+||+|.+.++.+.....                                     ..++
T Consensus       180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v  259 (384)
T 3ldg_A          180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI  259 (384)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence            344444444445556779999999999999987754321                                     1469


Q ss_pred             EEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC-------cccHHHHHHHHhcc
Q 029836           48 LALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK-------DNYVNYHKRLIELV  120 (187)
Q Consensus        48 ~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~-------~~~~~~~~~~~~~L  120 (187)
                      +++|+++.+++.|++|++.+|+.+++++.++|+.+...        .++||+|+++++.       .....++..+.+.|
T Consensus       260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~--------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~l  331 (384)
T 3ldg_A          260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT--------NKINGVLISNPPYGERLLDDKAVDILYNEMGETF  331 (384)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC--------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc--------cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999998889999999987532        3589999999872       23445666565666


Q ss_pred             cC--CeEEE
Q 029836          121 KV--GGVIG  127 (187)
Q Consensus       121 ~~--gG~lv  127 (187)
                      ++  |+.+.
T Consensus       332 k~~~g~~~~  340 (384)
T 3ldg_A          332 APLKTWSQF  340 (384)
T ss_dssp             TTCTTSEEE
T ss_pred             hhCCCcEEE
Confidence            65  66554

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.23  E-value=1.7e-10  Score=89.09  Aligned_cols=88  Identities=18%  Similarity=0.131  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-   83 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-   83 (187)
                      +...+.+-..+...+..+|||||||+|..+..+++.   ..+|+++|+++.+++.+++++...   ++++++++|+.+. 
T Consensus        36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~  109 (295)
T 3gru_A           36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVD  109 (295)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCC
Confidence            334444444444556789999999999999999987   479999999999999999998742   5899999999864 


Q ss_pred             HHHHhhcccCCCceeEEEEcCCC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADK  106 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~  106 (187)
                      ++        ..+||.|+.+.+.
T Consensus       110 ~~--------~~~fD~Iv~NlPy  124 (295)
T 3gru_A          110 LN--------KLDFNKVVANLPY  124 (295)
T ss_dssp             GG--------GSCCSEEEEECCG
T ss_pred             cc--------cCCccEEEEeCcc
Confidence            22        3469999988653

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.21  E-value=5.9e-11  Score=94.07  Aligned_cols=105  Identities=19%  Similarity=0.121  Sum_probs=83.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+..+|||||||+|..+..+++..| +.+++..|. |+.++.++++++..+ .++++++.+|+.+. +        ...+
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~-~--------~~~~  245 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYP-GCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKD-P--------LPEA  245 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTS-C--------CCCC
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccC-C--------CCCc
Confidence            4567999999999999999999988 789999897 889999998876544 58999999998642 1        3468


Q ss_pred             eEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           98 DFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        98 D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      |++++-..     .+.....++++.+.|+|||.+++.+....
T Consensus       246 D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~  287 (353)
T 4a6d_A          246 DLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLD  287 (353)
T ss_dssp             SEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCC
T ss_pred             eEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeC
Confidence            99987643     23346789999999999998888776543

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.21  E-value=1.4e-11  Score=97.97  Aligned_cols=97  Identities=11%  Similarity=0.099  Sum_probs=77.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      +..+|||||||+|..+..+++.+| ..+++++|+ +.+++.+++       .++++++.+|+.+.++         .. |
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p---------~~-D  261 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYP-TIKGVNFDL-PHVISEAPQ-------FPGVTHVGGDMFKEVP---------SG-D  261 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTTCCC---------CC-S
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCC-CCeEEEecC-HHHHHhhhh-------cCCeEEEeCCcCCCCC---------CC-C
Confidence            467999999999999999999987 689999999 877766543       2689999999875322         23 9


Q ss_pred             EEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           99 FVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        99 ~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      +|++...     .++...+++++.+.|+|||.+++.+....
T Consensus       262 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~  302 (364)
T 3p9c_A          262 TILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILP  302 (364)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             EEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            9988654     23346789999999999999998877654

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.21  E-value=6.4e-12  Score=95.33  Aligned_cols=85  Identities=8%  Similarity=0.067  Sum_probs=67.9

Q ss_pred             HHHHhhcCC--CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC--------CCCceEEEeCCch
Q 029836           12 SMLLKLINA--KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG--------VAHKIDFREGPAL   81 (187)
Q Consensus        12 ~~l~~~~~~--~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~--------~~~~i~~~~~d~~   81 (187)
                      ...+...++  .+|||+|||+|..+++++..   +++|+++|.++...+.++++++...        +..+++++++|+.
T Consensus        79 ~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~  155 (258)
T 2oyr_A           79 AKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (258)
T ss_dssp             HHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred             HHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHH
Confidence            334444556  89999999999999999986   4579999999998888888776432        2257999999999


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      ++++.+      .++||+|++|+.
T Consensus       156 ~~L~~~------~~~fDvV~lDP~  173 (258)
T 2oyr_A          156 TALTDI------TPRPQVVYLDPM  173 (258)
T ss_dssp             HHSTTC------SSCCSEEEECCC
T ss_pred             HHHHhC------cccCCEEEEcCC
Confidence            887654      357999999986

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.20  E-value=5.2e-11  Score=99.93  Aligned_cols=101  Identities=19%  Similarity=0.249  Sum_probs=76.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||.|..+..+++.   +++|+|||.++.+++.|+....+.+. .++++.+++++++.....     .++
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~-----~~~  134 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPD-FAAEFRVGRIEEVIAALE-----EGE  134 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTT-SEEEEEECCHHHHHHHCC-----TTS
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCC-CceEEEECCHHHHhhhcc-----CCC
Confidence            356889999999999999999986   68999999999999999999988775 379999999987765432     468


Q ss_pred             eeEEEEcCCCccc-----HHHHHHHHhcccCCeEE
Q 029836           97 FDFVFVDADKDNY-----VNYHKRLIELVKVGGVI  126 (187)
Q Consensus        97 ~D~v~~d~~~~~~-----~~~~~~~~~~L~~gG~l  126 (187)
                      ||+|++-..-++.     ......+.+.|++++..
T Consensus       135 fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~  169 (569)
T 4azs_A          135 FDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQA  169 (569)
T ss_dssp             CSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSE
T ss_pred             ccEEEECcchhcCCCHHHHHHHHHHHHHhccccce
Confidence            9999986552221     11222344556666543

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.20  E-value=1.5e-10  Score=89.67  Aligned_cols=84  Identities=13%  Similarity=0.039  Sum_probs=68.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..+++.++ +++|+++|.++.+++.|+++++.++  .+++++++|+.++...+...+  .++
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g--~~~   98 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLG--IEK   98 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTT--CSC
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcC--CCC
Confidence            34567999999999999999999886 6899999999999999999998877  589999999876532221110  258


Q ss_pred             eeEEEEcCC
Q 029836           97 FDFVFVDAD  105 (187)
Q Consensus        97 ~D~v~~d~~  105 (187)
                      ||.|++|..
T Consensus        99 ~D~Vl~D~g  107 (301)
T 1m6y_A           99 VDGILMDLG  107 (301)
T ss_dssp             EEEEEEECS
T ss_pred             CCEEEEcCc
Confidence            999999975

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.19  E-value=5e-11  Score=97.24  Aligned_cols=117  Identities=13%  Similarity=0.073  Sum_probs=89.5

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC------------CCCEEEEEeCCchHHHHHHHHHHHcCCCC
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIP------------DDGKILALDITKEHYEKGLPIIQKAGVAH   71 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~------------~~~~v~~vd~~~~~~~~a~~~~~~~~~~~   71 (187)
                      +....+++..++...+..+|+|.|||+|.....+++.+.            ...+++|+|+++.+++.|+.++...+...
T Consensus       156 P~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~  235 (445)
T 2okc_A          156 PRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT  235 (445)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             cHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence            445555666666555567999999999999998887541            13579999999999999999999888743


Q ss_pred             -ceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc-------c-------------cHHHHHHHHhcccCCeEEEE
Q 029836           72 -KIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD-------N-------------YVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        72 -~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~-------~-------------~~~~~~~~~~~L~~gG~lv~  128 (187)
                       ++.+.++|+.....        .++||+|+.+++..       .             ...++..+.++|+|||.+++
T Consensus       236 ~~~~i~~gD~l~~~~--------~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~  305 (445)
T 2okc_A          236 DRSPIVCEDSLEKEP--------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  305 (445)
T ss_dssp             SCCSEEECCTTTSCC--------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCEeeCCCCCCcc--------cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence             67889999875421        34899999987611       0             14788999999999998865

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.17  E-value=2.9e-11  Score=96.41  Aligned_cols=97  Identities=13%  Similarity=0.141  Sum_probs=77.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||||||+|..+..+++..+ ..+++++|+ +.+++.+++      . ++++++.+|..+.   +      . .||
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~---~------~-~~D  269 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFAS---V------P-QGD  269 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTTC---C------C-CEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCcccC---C------C-CCC
Confidence            467999999999999999999886 689999999 888876654      1 5799999998752   1      2 399


Q ss_pred             EEEEcCCC---cc--cHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           99 FVFVDADK---DN--YVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        99 ~v~~d~~~---~~--~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      +|++...-   .+  ...+++.+.+.|+|||.+++.+....
T Consensus       270 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~  310 (372)
T 1fp1_D          270 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP  310 (372)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            99987541   22  23889999999999999998776543

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.15  E-value=5.4e-10  Score=88.45  Aligned_cols=119  Identities=15%  Similarity=0.076  Sum_probs=93.3

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC-----CceEEEeCCchH
Q 029836            8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-----HKIDFREGPALP   82 (187)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~   82 (187)
                      ..+...++...++.+|||+.+|.|.=|..++.... .+.|+++|+++..++..+++++..+..     .++.+...|+..
T Consensus       137 S~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~  215 (359)
T 4fzv_A          137 SLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRK  215 (359)
T ss_dssp             GHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGG
T ss_pred             HHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhh
Confidence            34555556666778999999999999999988654 578999999999999999999988753     578999999976


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCCcc---------------------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADKDN---------------------------YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~~~---------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +....      .+.||.|++|++...                           ....++.+.++|||||.||...+..
T Consensus       216 ~~~~~------~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          216 WGELE------GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             HHHHS------TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             cchhc------cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence            54332      568999999976211                           0356777889999999999766543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.13  E-value=7.8e-11  Score=93.19  Aligned_cols=98  Identities=14%  Similarity=0.122  Sum_probs=77.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++      . ++++++.+|..+.+         . .|
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~~---------p-~~  247 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFTSI---------P-NA  247 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTTCC---------C-CC
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhccc------C-CCcEEEeccccCCC---------C-Cc
Confidence            4568999999999999999999887 689999999 988877664      1 46999999986421         2 49


Q ss_pred             eEEEEcCC---Cc--ccHHHHHHHHhcccC---CeEEEEeCcCCC
Q 029836           98 DFVFVDAD---KD--NYVNYHKRLIELVKV---GGVIGYDNTLWG  134 (187)
Q Consensus        98 D~v~~d~~---~~--~~~~~~~~~~~~L~~---gG~lv~~~~~~~  134 (187)
                      |+|++...   ..  ....+++.+.+.|+|   ||.+++.+....
T Consensus       248 D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~  292 (352)
T 1fp2_A          248 DAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID  292 (352)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred             cEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence            99998654   12  234889999999999   999988776543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.12  E-value=4.9e-10  Score=84.89  Aligned_cols=91  Identities=11%  Similarity=0.026  Sum_probs=68.7

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .+...+.+-..+...+..+|||||||+|..+..+++.   ..+|+++|+++.+++.+++++..   .++++++++|+.++
T Consensus        14 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~   87 (255)
T 3tqs_A           14 DSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQF   87 (255)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhC
Confidence            3444455555555567789999999999999999975   47999999999999999998865   36899999999875


Q ss_pred             -HHHHhhcccCCCceeEEEEcCC
Q 029836           84 -LDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        84 -l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                       ++.+..    .++|| |+.+.+
T Consensus        88 ~~~~~~~----~~~~~-vv~NlP  105 (255)
T 3tqs_A           88 DFSSVKT----DKPLR-VVGNLP  105 (255)
T ss_dssp             CGGGSCC----SSCEE-EEEECC
T ss_pred             CHHHhcc----CCCeE-EEecCC
Confidence             333210    24688 666654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.08  E-value=4.2e-10  Score=86.70  Aligned_cols=90  Identities=13%  Similarity=0.163  Sum_probs=67.1

Q ss_pred             hcCCCEEEEEcccc------cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEE-EeCCchHHHHHHhh
Q 029836           17 LINAKNTMEIGVFT------GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDF-REGPALPLLDQLIQ   89 (187)
Q Consensus        17 ~~~~~~vLeiG~g~------G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~-~~~d~~~~l~~~~~   89 (187)
                      ..+..+|||+|||+      |.  ..+++.++++++|+++|+++.             + +++++ +++|+.+..  .  
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~--~--  120 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVH--T--  120 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCC--C--
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCC--c--
Confidence            34567999999944      66  445666665689999999997             1 36888 999987532  1  


Q ss_pred             cccCCCceeEEEEcCCCc--------------ccHHHHHHHHhcccCCeEEEEeC
Q 029836           90 DEKYHGTFDFVFVDADKD--------------NYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~~~--------------~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                          .++||+|+++....              .+...++.+.+.|||||.+++..
T Consensus       121 ----~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          121 ----ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             ----SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                35899999975311              13478899999999999999864

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.08  E-value=6e-10  Score=92.89  Aligned_cols=119  Identities=13%  Similarity=0.042  Sum_probs=89.5

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-----------------CCEEEEEeCCchHHHHHHHHHHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPD-----------------DGKILALDITKEHYEKGLPIIQK   66 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~-----------------~~~v~~vd~~~~~~~~a~~~~~~   66 (187)
                      +....+++..++...+..+|+|.+||+|.....+++.+..                 ..+++|+|+++.+++.|+.++..
T Consensus       154 P~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l  233 (541)
T 2ar0_A          154 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL  233 (541)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH
Confidence            3445566666665555679999999999999888765421                 13799999999999999999988


Q ss_pred             cCCCC----ceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc---c--------------cHHHHHHHHhcccCCeE
Q 029836           67 AGVAH----KIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD---N--------------YVNYHKRLIELVKVGGV  125 (187)
Q Consensus        67 ~~~~~----~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~---~--------------~~~~~~~~~~~L~~gG~  125 (187)
                      .+...    ++.+.++|+.......      .++||+|+.+++..   .              ...++..+.+.|++||.
T Consensus       234 ~gi~~~~~~~~~I~~gDtL~~~~~~------~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr  307 (541)
T 2ar0_A          234 HDIEGNLDHGGAIRLGNTLGSDGEN------LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGR  307 (541)
T ss_dssp             TTCCCBGGGTBSEEESCTTSHHHHT------SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred             hCCCccccccCCeEeCCCccccccc------ccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCE
Confidence            88743    2788999987543221      46899999987611   1              23688999999999998


Q ss_pred             EEE
Q 029836          126 IGY  128 (187)
Q Consensus       126 lv~  128 (187)
                      +++
T Consensus       308 ~a~  310 (541)
T 2ar0_A          308 AAV  310 (541)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.06  E-value=1.3e-09  Score=83.15  Aligned_cols=97  Identities=10%  Similarity=-0.026  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-   83 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-   83 (187)
                      +...+-+-..+...+. +|||||||+|..+..+++.   +.+|+++|+++++++.+++++..    .+++++++|+.++ 
T Consensus        33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~  104 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYP  104 (271)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSC
T ss_pred             HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCC
Confidence            3333444444445556 9999999999999999986   36899999999999999988752    5899999999875 


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHH
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRL  116 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~  116 (187)
                      ++.       ...+|.|+.+.+..-....+..+
T Consensus       105 ~~~-------~~~~~~iv~NlPy~iss~il~~l  130 (271)
T 3fut_A          105 WEE-------VPQGSLLVANLPYHIATPLVTRL  130 (271)
T ss_dssp             GGG-------SCTTEEEEEEECSSCCHHHHHHH
T ss_pred             hhh-------ccCccEEEecCcccccHHHHHHH
Confidence            221       13578998877643333333333

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.05  E-value=1.1e-09  Score=82.41  Aligned_cols=61  Identities=16%  Similarity=0.128  Sum_probs=52.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      ..++.+|||||||+|..+..+++.   ..+|+++|+++.+++.+++++...   ++++++++|+.+.
T Consensus        28 ~~~~~~VLDiG~G~G~lt~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~   88 (244)
T 1qam_A           28 LNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQF   88 (244)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGC
T ss_pred             CCCCCEEEEEeCCchHHHHHHHHc---CCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhC
Confidence            345679999999999999999987   378999999999999999888642   5899999999764

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.04  E-value=5.2e-10  Score=88.66  Aligned_cols=97  Identities=13%  Similarity=0.032  Sum_probs=76.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+..+|||||||+|..+..+++.+| ..+++++|+ +.+++.+++      . ++++++.+|..+.          ..+|
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~----------~~~~  252 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFKS----------IPSA  252 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTTC----------CCCC
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEecc-HHHHhhccc------C-CCcEEEeCccCCC----------CCCc
Confidence            4668999999999999999999987 689999999 777766553      2 4699999998752          1259


Q ss_pred             eEEEEcCC---Ccc--cHHHHHHHHhcccC---CeEEEEeCcCC
Q 029836           98 DFVFVDAD---KDN--YVNYHKRLIELVKV---GGVIGYDNTLW  133 (187)
Q Consensus        98 D~v~~d~~---~~~--~~~~~~~~~~~L~~---gG~lv~~~~~~  133 (187)
                      |+|++...   ..+  ...+++.+.+.|+|   ||.+++.+...
T Consensus       253 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~  296 (358)
T 1zg3_A          253 DAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISI  296 (358)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred             eEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence            99998754   122  34889999999999   99998876654

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.02  E-value=7.9e-11  Score=91.53  Aligned_cols=95  Identities=9%  Similarity=0.041  Sum_probs=66.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC----CchHHHHHHHHHHHcCCCCceEEEeC-CchHHHHHHhhcccC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDI----TKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDEKY   93 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~----~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~   93 (187)
                      +..+|||+|||+|.++..+++.    ++|+++|+    ++..++.+.  .+..+ .++++++++ |..+. +        
T Consensus        82 ~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l-~--------  145 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFI-P--------  145 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTS-C--------
T ss_pred             CCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccC-C--------
Confidence            3579999999999999999875    47999999    453332110  11111 157899998 77543 2        


Q ss_pred             CCceeEEEEcCCCc--c----c---HHHHHHHHhcccCCeEEEEe
Q 029836           94 HGTFDFVFVDADKD--N----Y---VNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        94 ~~~~D~v~~d~~~~--~----~---~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++||+|++|....  .    .   ...+..+.+.|||||.+++.
T Consensus       146 ~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          146 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            45899999986521  1    1   14677788999999999984

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.01  E-value=4.1e-11  Score=91.34  Aligned_cols=98  Identities=9%  Similarity=-0.025  Sum_probs=67.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHH-HHcCCCCceEEE--eCCchHHHHHHhhcccCCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPII-QKAGVAHKIDFR--EGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~-~~~~~~~~i~~~--~~d~~~~l~~~~~~~~~~~   95 (187)
                      +..+|||+|||+|.++..+++.    ++|++||+++ +...+++.. .......++.++  ++|+.++ +        .+
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~--------~~  139 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL-P--------VE  139 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS-C--------CC
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC-C--------CC
Confidence            4579999999999999998875    5799999998 432221110 000011168888  8888753 2        46


Q ss_pred             ceeEEEEcCCC--ccc-------HHHHHHHHhcccCCe--EEEEeC
Q 029836           96 TFDFVFVDADK--DNY-------VNYHKRLIELVKVGG--VIGYDN  130 (187)
Q Consensus        96 ~~D~v~~d~~~--~~~-------~~~~~~~~~~L~~gG--~lv~~~  130 (187)
                      +||+|++|...  ...       ..+++.+.+.|+|||  .+++..
T Consensus       140 ~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          140 RTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            89999998641  111       136788889999999  998854

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.01  E-value=4.7e-11  Score=91.55  Aligned_cols=98  Identities=7%  Similarity=-0.060  Sum_probs=68.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHH-HHcCCCCceEEE--eCCchHHHHHHhhcccCCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPII-QKAGVAHKIDFR--EGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~-~~~~~~~~i~~~--~~d~~~~l~~~~~~~~~~~   95 (187)
                      +..+|||+|||+|.++..+++.    ++|++||+++ +...+++.. .......+++++  ++|+.++ +        .+
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~--------~~  147 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM-E--------PF  147 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC-C--------CC
T ss_pred             CCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC-C--------CC
Confidence            4579999999999999998875    5799999998 433222110 000111278899  8998753 2        46


Q ss_pred             ceeEEEEcCCC--cc-----c--HHHHHHHHhcccCCe--EEEEeC
Q 029836           96 TFDFVFVDADK--DN-----Y--VNYHKRLIELVKVGG--VIGYDN  130 (187)
Q Consensus        96 ~~D~v~~d~~~--~~-----~--~~~~~~~~~~L~~gG--~lv~~~  130 (187)
                      +||+|++|...  ..     .  ..+++.+.+.|+|||  .+++..
T Consensus       148 ~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          148 QADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             CcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            89999998641  11     1  136788889999999  988853

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.99  E-value=2.3e-09  Score=90.28  Aligned_cols=99  Identities=12%  Similarity=-0.000  Sum_probs=77.2

Q ss_pred             CCEEEEEcccccHHHHHHH---hhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           20 AKNTMEIGVFTGYSLLATA---LAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~---~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ...|||+|||+|......+   +......+|++||.++ +...+++..+.++..++|++++++.+++-  +      .++
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~--L------PEK  428 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWV--A------PEK  428 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCC--C------SSC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceecc--C------Ccc
Confidence            3579999999999854443   3322224799999997 56688899999999999999999998762  1      578


Q ss_pred             eeEEEEcCC-----CcccHHHHHHHHhcccCCeEEE
Q 029836           97 FDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        97 ~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      .|+|+.-.-     .+..++.+....+.|||||+++
T Consensus       429 VDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          429 ADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             cCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            999997542     4566777777779999999986

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.95  E-value=1.9e-09  Score=92.36  Aligned_cols=119  Identities=14%  Similarity=0.117  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC---C--------------------------------------C
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAI---P--------------------------------------D   43 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~---~--------------------------------------~   43 (187)
                      +.....+-.++...+...+||.+||+|.+.++.+...   +                                      .
T Consensus       176 e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~  255 (703)
T 3v97_A          176 ETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY  255 (703)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence            3334444444444566799999999999999877542   1                                      1


Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc-------ccHHHHHHH
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD-------NYVNYHKRL  116 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~-------~~~~~~~~~  116 (187)
                      ..+++++|+++.+++.|++|+..+|+.+.+++.++|+.+..+...     .++||+|+.+++..       ....++..+
T Consensus       256 ~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~-----~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l  330 (703)
T 3v97_A          256 SSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLP-----KGPYGTVLSNPPYGERLDSEPALIALHSLL  330 (703)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCT-----TCCCCEEEECCCCCC---CCHHHHHHHHHH
T ss_pred             CccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccc-----cCCCCEEEeCCCccccccchhHHHHHHHHH
Confidence            257999999999999999999999998889999999987432110     23799999998721       223344433


Q ss_pred             ---HhcccCCeEEEE
Q 029836          117 ---IELVKVGGVIGY  128 (187)
Q Consensus       117 ---~~~L~~gG~lv~  128 (187)
                         .+.+.+||.+.+
T Consensus       331 ~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          331 GRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHCTTCEEEE
T ss_pred             HHHHHhhCCCCeEEE
Confidence               344457886654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.94  E-value=3.5e-11  Score=90.67  Aligned_cols=102  Identities=10%  Similarity=0.119  Sum_probs=73.2

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccC
Q 029836           14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      .+...+..+|||||||+|..+..+++.   ..+++++|+++.+++.+++++.   ..++++++++|+.+..  +.    .
T Consensus        24 ~~~~~~~~~VLDiG~G~G~~~~~l~~~---~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~--~~----~   91 (245)
T 1yub_A           24 QLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQ--FP----N   91 (245)
T ss_dssp             HCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTT--CC----C
T ss_pred             hcCCCCCCEEEEEeCCCCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcC--cc----c
Confidence            333445679999999999999999987   3799999999999998887765   2368999999997642  10    0


Q ss_pred             CCceeEEEEcCCCcc--------------cHHHH----HHHHhcccCCeEEEE
Q 029836           94 HGTFDFVFVDADKDN--------------YVNYH----KRLIELVKVGGVIGY  128 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~--------------~~~~~----~~~~~~L~~gG~lv~  128 (187)
                      .++| .|+.+.+...              ....+    +.+.++|+|||.+.+
T Consensus        92 ~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v  143 (245)
T 1yub_A           92 KQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL  143 (245)
T ss_dssp             SSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred             CCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence            2578 6666654111              11122    557889999998754

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.93  E-value=7e-09  Score=79.54  Aligned_cols=74  Identities=11%  Similarity=0.127  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +...+.+-..+...+..+|||||||+|..+..+++..+. +++|+++|+++.+++.++++.     ..+++++++|+.++
T Consensus        28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTF  102 (279)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcC
Confidence            344444444445556789999999999999999987542 245999999999999999883     26899999999874

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.90  E-value=9.2e-09  Score=77.63  Aligned_cols=109  Identities=14%  Similarity=0.056  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-H
Q 029836            6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-L   84 (187)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l   84 (187)
                      ...+.+-..+...++.+|||||||+|..+..+++. + ..+|+++|+++.+++.++++    . ..+++++++|+.++ +
T Consensus        18 ~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~~~~   90 (249)
T 3ftd_A           18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSI----G-DERLEVINEDASKFPF   90 (249)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTTCCG
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhhCCh
Confidence            33333333444456789999999999999999876 2 47999999999999999876    1 25899999999864 3


Q ss_pred             HHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcc--cCCeEEEE
Q 029836           85 DQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV--KVGGVIGY  128 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L--~~gG~lv~  128 (187)
                      +..      .+.+ .|+.+.+..-....+..+....  -+.+++++
T Consensus        91 ~~~------~~~~-~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~  129 (249)
T 3ftd_A           91 CSL------GKEL-KVVGNLPYNVASLIIENTVYNKDCVPLAVFMV  129 (249)
T ss_dssp             GGS------CSSE-EEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             hHc------cCCc-EEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence            322      2233 6666665433344444443322  23445543

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.88  E-value=1e-08  Score=86.64  Aligned_cols=105  Identities=7%  Similarity=-0.114  Sum_probs=75.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhC---C---------CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836           20 AKNTMEIGVFTGYSLLATALAI---P---------DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~---~---------~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      .+.|||+|||+|..+...+.+.   .         ...+|++||.++.+...++.... ++..++|++++++++++-...
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            4589999999999875432221   1         13499999999987765555444 788889999999998863211


Q ss_pred             hhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEE
Q 029836           88 IQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      ...+  .++.|+|+.-..     .+-.++.+..+.+.|||||+++
T Consensus       489 ~~~~--~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          489 KDRG--FEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHTT--CCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccCC--CCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            1111  468999997643     3445677777789999999986

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.85  E-value=3.6e-08  Score=82.09  Aligned_cols=121  Identities=12%  Similarity=0.081  Sum_probs=93.3

Q ss_pred             CCHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEE
Q 029836            3 TSPDEAQFFSMLLK----LINAKNTMEIGVFTGYSLLATALAIP--DDGKILALDITKEHYEKGLPIIQKAGVA-HKIDF   75 (187)
Q Consensus         3 ~~~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~~~~l~~~~~--~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~   75 (187)
                      +++...++|..++.    ..+..+|+|.+||+|.....+++.+.  ...+++|+|+++.++..|+.|+...|.. +++.+
T Consensus       201 TP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I  280 (542)
T 3lkd_A          201 TPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFL  280 (542)
T ss_dssp             CCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             ccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccce
Confidence            45677778888776    33567999999999999998888763  2478999999999999999999988885 47899


Q ss_pred             EeCCchHH-HHHHhhcccCCCceeEEEEcCCC------c-----c-----c----------HHHHHHHHhccc-CCeEEE
Q 029836           76 REGPALPL-LDQLIQDEKYHGTFDFVFVDADK------D-----N-----Y----------VNYHKRLIELVK-VGGVIG  127 (187)
Q Consensus        76 ~~~d~~~~-l~~~~~~~~~~~~~D~v~~d~~~------~-----~-----~----------~~~~~~~~~~L~-~gG~lv  127 (187)
                      .++|+... ++..     ...+||+|+.+++.      .     +     +          ..|+..+.+.|+ +||.+.
T Consensus       281 ~~gDtL~~d~p~~-----~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a  355 (542)
T 3lkd_A          281 HNADTLDEDWPTQ-----EPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMA  355 (542)
T ss_dssp             EESCTTTSCSCCS-----SCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEE
T ss_pred             Eecceeccccccc-----ccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEE
Confidence            99998753 1211     14689999998661      0     0     1          237888999999 999885


Q ss_pred             E
Q 029836          128 Y  128 (187)
Q Consensus       128 ~  128 (187)
                      +
T Consensus       356 ~  356 (542)
T 3lkd_A          356 I  356 (542)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.85  E-value=2.6e-09  Score=89.06  Aligned_cols=119  Identities=8%  Similarity=0.055  Sum_probs=87.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC--------------CCEEEEEeCCchHHHHHHHHHHHcC
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPD--------------DGKILALDITKEHYEKGLPIIQKAG   68 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~--------------~~~v~~vd~~~~~~~~a~~~~~~~~   68 (187)
                      +++...++|..++... +.+|+|.+||+|...+.+++.+..              ..+++|+|+++.+++.|+.++...+
T Consensus       229 TP~~Vv~lmv~ll~p~-~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g  307 (544)
T 3khk_A          229 TPKSIVTLIVEMLEPY-KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG  307 (544)
T ss_dssp             CCHHHHHHHHHHHCCC-SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHhcC-CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC
Confidence            4556667777666543 349999999999988877654320              3589999999999999999999988


Q ss_pred             CCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCcc--------------------------------cHHHHHHH
Q 029836           69 VAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDN--------------------------------YVNYHKRL  116 (187)
Q Consensus        69 ~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~--------------------------------~~~~~~~~  116 (187)
                      +..++.+.++|+..... .     ...+||+|+.+++...                                ...++..+
T Consensus       308 i~~~i~i~~gDtL~~~~-~-----~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~  381 (544)
T 3khk_A          308 IDFNFGKKNADSFLDDQ-H-----PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHM  381 (544)
T ss_dssp             CCCBCCSSSCCTTTSCS-C-----TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHH
T ss_pred             CCcccceeccchhcCcc-c-----ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHH
Confidence            87666668888764311 1     1468999999876110                                02588899


Q ss_pred             HhcccCCeEEEE
Q 029836          117 IELVKVGGVIGY  128 (187)
Q Consensus       117 ~~~L~~gG~lv~  128 (187)
                      .+.|++||.+++
T Consensus       382 l~~Lk~gGr~ai  393 (544)
T 3khk_A          382 LYHLAPTGSMAL  393 (544)
T ss_dssp             HHTEEEEEEEEE
T ss_pred             HHHhccCceEEE
Confidence            999999998754

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.81  E-value=2.4e-08  Score=75.50  Aligned_cols=94  Identities=10%  Similarity=-0.003  Sum_probs=64.5

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .+...+.+-..+...+..+|||||||+|..+. +.. .+ ..+|+++|+++.+++.+++++...   ++++++++|+.+.
T Consensus         6 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~   79 (252)
T 1qyr_A            6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTF   79 (252)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhC
Confidence            34444444444455567899999999999999 653 22 234999999999999998876542   5899999999874


Q ss_pred             -HHHHhhcccCCCceeEEEEcCCC
Q 029836           84 -LDQLIQDEKYHGTFDFVFVDADK  106 (187)
Q Consensus        84 -l~~~~~~~~~~~~~D~v~~d~~~  106 (187)
                       ++...+.   .+..|.|+...+.
T Consensus        80 ~~~~~~~~---~~~~~~vvsNlPY  100 (252)
T 1qyr_A           80 NFGELAEK---MGQPLRVFGNLPY  100 (252)
T ss_dssp             CHHHHHHH---HTSCEEEEEECCT
T ss_pred             CHHHhhcc---cCCceEEEECCCC
Confidence             4443110   0134677776653

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.79  E-value=7.8e-09  Score=78.70  Aligned_cols=111  Identities=13%  Similarity=0.188  Sum_probs=85.6

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836            8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      ..+++.+-. .++..+||+.+|+|.+++++++.   ..+++.+|.++..++..++|++.   ..+++++++|....+..+
T Consensus        81 ~~yf~~l~~-~n~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l  153 (283)
T 2oo3_A           81 LEYISVIKQ-INLNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNAL  153 (283)
T ss_dssp             HHHHHHHHH-HSSSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHH-hcCCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHh
Confidence            345555544 56788999999999999987762   57999999999999999998865   368999999998888766


Q ss_pred             hhcccCCCceeEEEEcCCCc---ccHHHHHHHHh--cccCCeEEEE
Q 029836           88 IQDEKYHGTFDFVFVDADKD---NYVNYHKRLIE--LVKVGGVIGY  128 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~~~---~~~~~~~~~~~--~L~~gG~lv~  128 (187)
                      ...   ..+||+||+|++.+   .+...++.+..  .+.++|++++
T Consensus       154 ~~~---~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          154 LPP---PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             CSC---TTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             cCC---CCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence            432   34799999999733   56666665553  5668898874

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.73  E-value=9.3e-08  Score=82.11  Aligned_cols=120  Identities=14%  Similarity=0.070  Sum_probs=82.2

Q ss_pred             CCHHHHHHHHHHHhh------cCCCEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCchHHHHH--HHHHHHcCCC--
Q 029836            3 TSPDEAQFFSMLLKL------INAKNTMEIGVFTGYSLLATALAIPD--DGKILALDITKEHYEKG--LPIIQKAGVA--   70 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~------~~~~~vLeiG~g~G~~~~~l~~~~~~--~~~v~~vd~~~~~~~~a--~~~~~~~~~~--   70 (187)
                      +.++...++..++..      .++.+|||.|||+|.....+++.++.  ..+++|+|+++.+++.|  +.++..+.+.  
T Consensus       299 TP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhG  378 (878)
T 3s1s_A          299 TDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSS  378 (878)
T ss_dssp             CCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBT
T ss_pred             CCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcC
Confidence            456777777777321      13569999999999999999887641  35799999999999999  5555432221  


Q ss_pred             -CceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc---c-----------------------------cHHHHHHHH
Q 029836           71 -HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD---N-----------------------------YVNYHKRLI  117 (187)
Q Consensus        71 -~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~---~-----------------------------~~~~~~~~~  117 (187)
                       ....+...|........      .++||+|+.+++..   .                             +..+++.+.
T Consensus       379 i~~~~I~~dD~L~~~~~~------~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al  452 (878)
T 3s1s_A          379 NNAPTITGEDVCSLNPED------FANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVT  452 (878)
T ss_dssp             TBCCEEECCCGGGCCGGG------GTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHH
T ss_pred             CCcceEEecchhcccccc------cCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHH
Confidence             22355555655421111      46899999987620   0                             234677888


Q ss_pred             hcccCCeEEEE
Q 029836          118 ELVKVGGVIGY  128 (187)
Q Consensus       118 ~~L~~gG~lv~  128 (187)
                      ++|++||.+++
T Consensus       453 ~lLKpGGrLAf  463 (878)
T 3s1s_A          453 ELVQDGTVISA  463 (878)
T ss_dssp             HHSCTTCEEEE
T ss_pred             HhcCCCcEEEE
Confidence            99999998875

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.72  E-value=5.1e-09  Score=74.53  Aligned_cols=88  Identities=9%  Similarity=0.070  Sum_probs=67.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH-HhhcccCCC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ-LIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~-~~~~~~~~~   95 (187)
                      ..++.+|||+|||.                 +++|+++.+++.|+++..     .++++.++|+.+.... ..     ++
T Consensus        10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~-----~~   62 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHK-----ES   62 (176)
T ss_dssp             CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCC-----SS
T ss_pred             CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCC-----CC
Confidence            34678999999975                 238999999999988753     2588999998754210 01     57


Q ss_pred             ceeEEEEcCC---C-cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           96 TFDFVFVDAD---K-DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        96 ~~D~v~~d~~---~-~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +||+|++...   . .+...+++++.+.|||||.+++.+.
T Consensus        63 ~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           63 SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             CEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence            8999998543   2 5678999999999999999998543

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.62  E-value=2.2e-07  Score=63.69  Aligned_cols=95  Identities=9%  Similarity=0.038  Sum_probs=63.2

Q ss_pred             HHHHHHHhhcC-CCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            9 QFFSMLLKLIN-AKNTMEIGVFTG-YSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         9 ~~l~~l~~~~~-~~~vLeiG~g~G-~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      .+...+.+... +.++||||||.| ..+..|++..  +..|+++|+++.+++                ++..|..+....
T Consensus        24 ~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~----------------~v~dDiF~P~~~   85 (153)
T 2k4m_A           24 DLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG----------------IVRDDITSPRME   85 (153)
T ss_dssp             HHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT----------------EECCCSSSCCHH
T ss_pred             HHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc----------------eEEccCCCCccc
Confidence            34444455544 579999999999 5999998743  578999999997664                777887664433


Q ss_pred             HhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           87 LIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +      -+.||+|+.-.++.+....+..+.+.  -|.-+++.
T Consensus        86 ~------Y~~~DLIYsirPP~El~~~i~~lA~~--v~adliI~  120 (153)
T 2k4m_A           86 I------YRGAALIYSIRPPAEIHSSLMRVADA--VGARLIIK  120 (153)
T ss_dssp             H------HTTEEEEEEESCCTTTHHHHHHHHHH--HTCEEEEE
T ss_pred             c------cCCcCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEE
Confidence            3      25899997544444544444444443  35555553

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.61  E-value=2e-07  Score=70.89  Aligned_cols=79  Identities=11%  Similarity=0.053  Sum_probs=63.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++..+||.+||.|.-+..+++.   +++|+++|.++.+++.|++ ++.    +++++++++..++-..+...+  .++
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g--~~~   89 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALG--VER   89 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTT--CSC
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcC--CCC
Confidence            345679999999999999999986   5899999999999999988 643    589999999977643332221  357


Q ss_pred             eeEEEEcCC
Q 029836           97 FDFVFVDAD  105 (187)
Q Consensus        97 ~D~v~~d~~  105 (187)
                      +|.|++|..
T Consensus        90 vDgIL~DLG   98 (285)
T 1wg8_A           90 VDGILADLG   98 (285)
T ss_dssp             EEEEEEECS
T ss_pred             cCEEEeCCc
Confidence            999999865

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.29  E-value=3.2e-06  Score=65.80  Aligned_cols=82  Identities=15%  Similarity=0.147  Sum_probs=64.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++..+||..+|.|.-+..+++.+++.++|+++|.++.+++.++ .+    ..+++++++++..++...+...+. .+++
T Consensus        56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~g~-~~~v  129 (347)
T 3tka_A           56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAERDL-IGKI  129 (347)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHHTTC-TTCE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHhcCC-CCcc
Confidence            34579999999999999999998876899999999999999884 33    237899999999776554432221 1369


Q ss_pred             eEEEEcCC
Q 029836           98 DFVFVDAD  105 (187)
Q Consensus        98 D~v~~d~~  105 (187)
                      |.|++|..
T Consensus       130 DgILfDLG  137 (347)
T 3tka_A          130 DGILLDLG  137 (347)
T ss_dssp             EEEEEECS
T ss_pred             cEEEECCc
Confidence            99999843

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.28  E-value=2.1e-06  Score=67.79  Aligned_cols=70  Identities=7%  Similarity=0.088  Sum_probs=53.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++.++||+||+.|.|+..+++.   +++|++||+.+-.-     .+..   .++++++++|+..+.+.       ..++
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~l~~-----~l~~---~~~V~~~~~d~~~~~~~-------~~~~  271 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGPMAQ-----SLMD---TGQVTWLREDGFKFRPT-------RSNI  271 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSCCCH-----HHHT---TTCEEEECSCTTTCCCC-------SSCE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhhcCh-----hhcc---CCCeEEEeCccccccCC-------CCCc
Confidence            45789999999999999999875   58999999865221     1221   26899999998776432       4589


Q ss_pred             eEEEEcCC
Q 029836           98 DFVFVDAD  105 (187)
Q Consensus        98 D~v~~d~~  105 (187)
                      |+|++|..
T Consensus       272 D~vvsDm~  279 (375)
T 4auk_A          272 SWMVCDMV  279 (375)
T ss_dssp             EEEEECCS
T ss_pred             CEEEEcCC
Confidence            99999986

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.27  E-value=3.8e-06  Score=69.86  Aligned_cols=121  Identities=12%  Similarity=0.109  Sum_probs=87.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC------------CCEEEEEeCCchHHHHHHHHHHHcCCC
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPD------------DGKILALDITKEHYEKGLPIIQKAGVA   70 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~------------~~~v~~vd~~~~~~~~a~~~~~~~~~~   70 (187)
                      ++....+++..++......+|+|-.||+|.......+.+..            ...++|+|+++.....|+-|+--+|. 
T Consensus       201 TP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~-  279 (530)
T 3ufb_A          201 TPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL-  279 (530)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC-
T ss_pred             CcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC-
Confidence            45677788888887777789999999999998876654321            24699999999999999999888887 


Q ss_pred             CceEEEeCCchHH-HHHHhhcccCCCceeEEEEcCCCc-------------------ccHHHHHHHHhccc-------CC
Q 029836           71 HKIDFREGPALPL-LDQLIQDEKYHGTFDFVFVDADKD-------------------NYVNYHKRLIELVK-------VG  123 (187)
Q Consensus        71 ~~i~~~~~d~~~~-l~~~~~~~~~~~~~D~v~~d~~~~-------------------~~~~~~~~~~~~L~-------~g  123 (187)
                      ....+.++|+... .....    ...+||+|+.+++..                   ....|+..+...|+       +|
T Consensus       280 ~~~~I~~~dtL~~~~~~~~----~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~g  355 (530)
T 3ufb_A          280 EYPRIDPENSLRFPLREMG----DKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNG  355 (530)
T ss_dssp             SCCEEECSCTTCSCGGGCC----GGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSC
T ss_pred             ccccccccccccCchhhhc----ccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCC
Confidence            3456778887642 11110    135799999997611                   11346677777776       68


Q ss_pred             eEEEE
Q 029836          124 GVIGY  128 (187)
Q Consensus       124 G~lv~  128 (187)
                      |.+.+
T Consensus       356 Gr~av  360 (530)
T 3ufb_A          356 GRAAV  360 (530)
T ss_dssp             CEEEE
T ss_pred             ceEEE
Confidence            87654

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.13  E-value=5.7e-06  Score=62.62  Aligned_cols=101  Identities=13%  Similarity=0.061  Sum_probs=62.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+..+|||+|||.|.|+..+++..+ ..++.++|+.-........ ....+  .++..+++++.. . .+.     .+++
T Consensus        73 ~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~-~~~~g--~~ii~~~~~~dv-~-~l~-----~~~~  141 (277)
T 3evf_A           73 KLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMN-VQSLG--WNIITFKDKTDI-H-RLE-----PVKC  141 (277)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCC-CCBTT--GGGEEEECSCCT-T-TSC-----CCCC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCcccccc-cCcCC--CCeEEEecccee-h-hcC-----CCCc
Confidence            3456999999999999999887543 4678888876432100000 00001  144555665421 1 111     5689


Q ss_pred             eEEEEcCCCc----cc-----HHHHHHHHhcccCC-eEEEEe
Q 029836           98 DFVFVDADKD----NY-----VNYHKRLIELVKVG-GVIGYD  129 (187)
Q Consensus        98 D~v~~d~~~~----~~-----~~~~~~~~~~L~~g-G~lv~~  129 (187)
                      |+|+.|..+.    ..     ...++.+.+.|+|| |.+|+.
T Consensus       142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K  183 (277)
T 3evf_A          142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK  183 (277)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence            9999997422    11     12457778999999 999984

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=98.04  E-value=1.8e-05  Score=62.36  Aligned_cols=59  Identities=5%  Similarity=-0.086  Sum_probs=49.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      ...|||||+|.|.+|..|++... ..+|+++|+++..+...++.+ .   .++++++++|+.++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCccch
Confidence            47899999999999999998633 368999999999998887766 2   26899999999765

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.01  E-value=2.8e-06  Score=64.42  Aligned_cols=101  Identities=11%  Similarity=0.013  Sum_probs=62.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+..+|||+||+.|.|+.++++..+ ..+++++|+.......+.. ....+  .++..+..+.. .. .+.     .+++
T Consensus        89 k~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~-~~~~g--~~ii~~~~~~d-v~-~l~-----~~~~  157 (282)
T 3gcz_A           89 KPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIM-RTTLG--WNLIRFKDKTD-VF-NME-----VIPG  157 (282)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCBTT--GGGEEEECSCC-GG-GSC-----CCCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCccccccc-cccCC--CceEEeeCCcc-hh-hcC-----CCCc
Confidence            4556999999999999999887544 4678999997543211110 00011  23333443321 11 111     5689


Q ss_pred             eEEEEcCCCc-------c--cHHHHHHHHhcccCC--eEEEEe
Q 029836           98 DFVFVDADKD-------N--YVNYHKRLIELVKVG--GVIGYD  129 (187)
Q Consensus        98 D~v~~d~~~~-------~--~~~~~~~~~~~L~~g--G~lv~~  129 (187)
                      |+|+.|..+.       +  ....++.+...|+||  |.+|+.
T Consensus       158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K  200 (282)
T 3gcz_A          158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK  200 (282)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence            9999997532       1  123466677899999  999985

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.98  E-value=1.4e-05  Score=68.52  Aligned_cols=107  Identities=17%  Similarity=0.152  Sum_probs=73.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCchHHHHHHHHH--------------HHcC------
Q 029836           20 AKNTMEIGVFTGYSLLATALAI-------PD----DGKILALDITKEHYEKGLPII--------------QKAG------   68 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~-------~~----~~~v~~vd~~~~~~~~a~~~~--------------~~~~------   68 (187)
                      +-+|+|+|.|+|++.+.+.+..       |.    ..+++++|..|-..+.+++.+              ....      
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            4589999999999888766542       11    157999999664444444322              2211      


Q ss_pred             ----CC---CceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCcc------cHHHHHHHHhcccCCeEEEE
Q 029836           69 ----VA---HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDN------YVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        69 ----~~---~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~------~~~~~~~~~~~L~~gG~lv~  128 (187)
                          +.   -+++++.||+.+.++++....  ...+|.+|+|+....      ..++|..+.+++++||.+.-
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~--~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t  209 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDSL--NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST  209 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGGG--TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhccccc--CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence                11   146788999999888762111  358999999986332      27889999999999999874

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.93  E-value=4.4e-05  Score=58.80  Aligned_cols=57  Identities=12%  Similarity=0.119  Sum_probs=46.4

Q ss_pred             HHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC
Q 029836            9 QFFSMLLKL--INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG   68 (187)
Q Consensus         9 ~~l~~l~~~--~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~   68 (187)
                      +++..++..  .+...|||.+||+|..+..++..   +.+++++|+++.+++.|+++++...
T Consensus       223 ~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          223 ELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            455555543  35679999999999999987764   4689999999999999999998753

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.91  E-value=0.0001  Score=56.81  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=66.4

Q ss_pred             CCCEEEEEcccccHHHHHHH----hhCCCCC--EEEEEeCCc--------hHH-HHHHHHHHHcCC--CCc--eEEEeCC
Q 029836           19 NAKNTMEIGVFTGYSLLATA----LAIPDDG--KILALDITK--------EHY-EKGLPIIQKAGV--AHK--IDFREGP   79 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~----~~~~~~~--~v~~vd~~~--------~~~-~~a~~~~~~~~~--~~~--i~~~~~d   79 (187)
                      +.-+|||+|-|+|...+...    +..+ ..  +++++|..+        +.. +..+........  ..+  .++..||
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~-~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD  174 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNP-KLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD  174 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCT-TCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCC-CcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence            34589999999999754332    2223 34  567777532        112 222322332210  123  4678899


Q ss_pred             chHHHHHHhhcccCCCceeEEEEcCC-C----cc-cHHHHHHHHhcccCCeEEE
Q 029836           80 ALPLLDQLIQDEKYHGTFDFVFVDAD-K----DN-YVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~D~v~~d~~-~----~~-~~~~~~~~~~~L~~gG~lv  127 (187)
                      +.+.++.+.     ...+|++|.|+. +    +- ..++|..+.++++|||+++
T Consensus       175 a~~~l~~l~-----~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~la  223 (308)
T 3vyw_A          175 ARKRIKEVE-----NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWV  223 (308)
T ss_dssp             HHHHGGGCC-----SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHhhhc-----ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEE
Confidence            998888762     347999999985 1    11 2689999999999999998

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.88  E-value=5.2e-06  Score=62.09  Aligned_cols=94  Identities=10%  Similarity=0.047  Sum_probs=59.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC--C-CCEEEEEe--CCchHHHHHHHHHHHcCCCCceEEEeC-CchHHHHHHhhccc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP--D-DGKILALD--ITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDEK   92 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~--~-~~~v~~vd--~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~   92 (187)
                      +..+|||+||+.|.|+.+.++..+  . .+.++++|  +.|-...       ..|. +-++|.++ |..+. +       
T Consensus        73 pg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~-------~~Gv-~~i~~~~G~Df~~~-~-------  136 (269)
T 2px2_A           73 PIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ-------SYGW-NIVTMKSGVDVFYK-P-------  136 (269)
T ss_dssp             CCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC-------STTG-GGEEEECSCCGGGS-C-------
T ss_pred             CCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc-------CCCc-eEEEeeccCCccCC-C-------
Confidence            456999999999999999887622  1 24556666  2221000       0011 22466667 88752 1       


Q ss_pred             CCCceeEEEEcCCCc---------ccHHHHHHHHhcccCCe-EEEEe
Q 029836           93 YHGTFDFVFVDADKD---------NYVNYHKRLIELVKVGG-VIGYD  129 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~---------~~~~~~~~~~~~L~~gG-~lv~~  129 (187)
                       ..++|+|++|..+.         .....++.+.+.|+||| .+++.
T Consensus       137 -~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK  182 (269)
T 2px2_A          137 -SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK  182 (269)
T ss_dssp             -CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             -CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence             35899999997521         11225677778999999 88763

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.79  E-value=0.00013  Score=53.99  Aligned_cols=99  Identities=12%  Similarity=0.049  Sum_probs=65.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-CchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~   95 (187)
                      ..+..+|||+||+.|.|+.+.+...+ ..+|.++|+-..-.+. -..++..|. +.++|+++ |.... +        ..
T Consensus        76 l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~-P~~~~s~gw-n~v~fk~gvDv~~~-~--------~~  143 (267)
T 3p8z_A           76 VIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEE-PVPMSTYGW-NIVKLMSGKDVFYL-P--------PE  143 (267)
T ss_dssp             SCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCC-CCCCCCTTT-TSEEEECSCCGGGC-C--------CC
T ss_pred             CCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccC-cchhhhcCc-CceEEEeccceeec-C--------Cc
Confidence            34566999999999999998887654 4689999986542210 000112233 57899998 76322 2        35


Q ss_pred             ceeEEEEcCCCc---------ccHHHHHHHHhcccCCeEEEE
Q 029836           96 TFDFVFVDADKD---------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        96 ~~D~v~~d~~~~---------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ++|.|++|..+.         .....++.+.+.|++ |-+++
T Consensus       144 ~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~  184 (267)
T 3p8z_A          144 KCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI  184 (267)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred             cccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence            799999997521         123466677788888 56655

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.74  E-value=2.2e-05  Score=59.95  Aligned_cols=100  Identities=11%  Similarity=0.047  Sum_probs=60.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      +.++|||+||+.|.|+..+++..+ ...|+++|+.......... ...  ...++....... +.. .+     ..+.+|
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~~-~~~--~~~~iv~~~~~~-di~-~l-----~~~~~D  149 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGIEGHEKPIH-MQT--LGWNIVKFKDKS-NVF-TM-----PTEPSD  149 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCB--TTGGGEEEECSC-CTT-TS-----CCCCCS
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEecccccccccc-ccc--cCCceEEeecCc-eee-ec-----CCCCcC
Confidence            467999999999999999997643 4678999986532100000 000  011222222221 111 11     146899


Q ss_pred             EEEEcCCCc-------c--cHHHHHHHHhcccCC-eEEEEe
Q 029836           99 FVFVDADKD-------N--YVNYHKRLIELVKVG-GVIGYD  129 (187)
Q Consensus        99 ~v~~d~~~~-------~--~~~~~~~~~~~L~~g-G~lv~~  129 (187)
                      +|+.|..+.       +  ....++.+...|+|| |.+|+.
T Consensus       150 lVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K  190 (300)
T 3eld_A          150 TLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK  190 (300)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             EEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            999997532       1  123466777899999 999986

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.70  E-value=0.00014  Score=55.44  Aligned_cols=88  Identities=13%  Similarity=0.188  Sum_probs=59.9

Q ss_pred             CCCEEEEEcc------cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhccc
Q 029836           19 NAKNTMEIGV------FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        19 ~~~~vLeiG~------g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      ...+|||+|+      ..|.+  .+.+..|.++.|+++|+.+-..           . .. .+++||......       
T Consensus       109 ~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-----------d-a~-~~IqGD~~~~~~-------  166 (344)
T 3r24_A          109 YNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-----------D-AD-STLIGDCATVHT-------  166 (344)
T ss_dssp             TTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-----------S-SS-EEEESCGGGEEE-------
T ss_pred             CCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-----------C-CC-eEEEcccccccc-------
Confidence            3579999996      67773  2334455446999999987431           1 12 558999754221       


Q ss_pred             CCCceeEEEEcCCC--------cc------cHHHHHHHHhcccCCeEEEEe
Q 029836           93 YHGTFDFVFVDADK--------DN------YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        93 ~~~~~D~v~~d~~~--------~~------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       .++||+|+.|..+        ..      ....++.+...|+|||.+++.
T Consensus       167 -~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK  216 (344)
T 3r24_A          167 -ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK  216 (344)
T ss_dssp             -SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence             4789999999541        11      245667778899999999985

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.55  E-value=0.00028  Score=56.74  Aligned_cols=60  Identities=8%  Similarity=0.139  Sum_probs=47.7

Q ss_pred             cCCCEEEEEcccccHHHHHHH-hhCCCCCEEEEEeCCchHHHHHHHHHHH--cCCC-CceEEEe
Q 029836           18 INAKNTMEIGVFTGYSLLATA-LAIPDDGKILALDITKEHYEKGLPIIQK--AGVA-HKIDFRE   77 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~-~~~~~~~~v~~vd~~~~~~~~a~~~~~~--~~~~-~~i~~~~   77 (187)
                      .+...++|||++.|..+..++ +..++.++|+++|++|...+..+++++.  ++.. +++++++
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~  288 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG  288 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEE
Confidence            456799999999999999988 4554348999999999999999999998  3322 4555544

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.54  E-value=0.0006  Score=58.21  Aligned_cols=106  Identities=20%  Similarity=0.207  Sum_probs=70.3

Q ss_pred             CEEEEEcccccHHHHHHHhhC-------C--C--CCEEEEEeC---CchHHHHH-----------HHHHHHcCCC-----
Q 029836           21 KNTMEIGVFTGYSLLATALAI-------P--D--DGKILALDI---TKEHYEKG-----------LPIIQKAGVA-----   70 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~-------~--~--~~~v~~vd~---~~~~~~~a-----------~~~~~~~~~~-----   70 (187)
                      -+|+|+|.|+|...+...+..       |  +  ..+++++|.   +++.+..+           ++.+......     
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH  147 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence            489999999999877765542       1  1  246899998   44443322           2222222110     


Q ss_pred             --------CceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC-----cc-cHHHHHHHHhcccCCeEEEE
Q 029836           71 --------HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK-----DN-YVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        71 --------~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~-----~~-~~~~~~~~~~~L~~gG~lv~  128 (187)
                              -++++..||+.+.++++....  ...+|.+|.|+..     +- ..++|..+.+++++||.+.-
T Consensus       148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~~--~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t  217 (676)
T 3ps9_A          148 RLLLDAGRVTLDLWFGDINELTSQLDDSL--NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  217 (676)
T ss_dssp             EEEEGGGTEEEEEEESCHHHHGGGBCGGG--TTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEecCCcEEEEEecCCHHHHHHhccccc--CCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence                    235678899998888762211  3579999999861     11 36789999999999999874

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.53  E-value=0.00055  Score=54.49  Aligned_cols=78  Identities=12%  Similarity=0.083  Sum_probs=46.6

Q ss_pred             CCEEEEEcccccHHHHHHHhh-------------C---CCCCEEEEEeCC-----------chHHHHHHHHHHHcCCCCc
Q 029836           20 AKNTMEIGVFTGYSLLATALA-------------I---PDDGKILALDIT-----------KEHYEKGLPIIQKAGVAHK   72 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~-------------~---~~~~~v~~vd~~-----------~~~~~~a~~~~~~~~~~~~   72 (187)
                      +.+|+|+||++|..|..+...             .   ++..+|+..|..           +...+.++   +..|...+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~---~~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLE---KENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHH---HHTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhh---hhccCCCC
Confidence            568999999999999987664             1   124678888876           33332221   12222123


Q ss_pred             eEEEeCCchHHHHHHhhcccCCCceeEEEEcC
Q 029836           73 IDFREGPALPLLDQLIQDEKYHGTFDFVFVDA  104 (187)
Q Consensus        73 i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~  104 (187)
                      ..|+.+.+..+-.++.+    .+++|+|+...
T Consensus       130 ~~f~~gvpgSFy~rlfp----~~S~d~v~Ss~  157 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFP----EESMHFLHSCY  157 (384)
T ss_dssp             SEEEEECCSCTTSCCSC----TTCEEEEEEES
T ss_pred             ceEEEecchhhhhccCC----CCceEEEEecc
Confidence            45555555444333332    57999999764

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.50  E-value=0.00018  Score=54.86  Aligned_cols=99  Identities=10%  Similarity=0.074  Sum_probs=62.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-CchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~   96 (187)
                      .+..+|||+||+.|.|+.+.+...+ ..+|.++|+-..-.+. -..+.+.+. +-++++.+ |.... +        ..+
T Consensus        93 ~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~-P~~~~ql~w-~lV~~~~~~Dv~~l-~--------~~~  160 (321)
T 3lkz_A           93 EPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEE-PQLVQSYGW-NIVTMKSGVDVFYR-P--------SEC  160 (321)
T ss_dssp             CCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCC-CCCCCBTTG-GGEEEECSCCTTSS-C--------CCC
T ss_pred             CCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccC-cchhhhcCC-cceEEEeccCHhhC-C--------CCC
Confidence            3456999999999999998886643 4689999997541100 000011111 23777777 55322 2        356


Q ss_pred             eeEEEEcCCCc---------ccHHHHHHHHhcccCC-eEEEE
Q 029836           97 FDFVFVDADKD---------NYVNYHKRLIELVKVG-GVIGY  128 (187)
Q Consensus        97 ~D~v~~d~~~~---------~~~~~~~~~~~~L~~g-G~lv~  128 (187)
                      +|+|++|....         .....++.+.+.|++| |-+++
T Consensus       161 ~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~  202 (321)
T 3lkz_A          161 CDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV  202 (321)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence            99999996521         1233666667888888 77776

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.41  E-value=0.00045  Score=52.08  Aligned_cols=58  Identities=5%  Similarity=0.120  Sum_probs=45.1

Q ss_pred             HHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC
Q 029836            9 QFFSMLLKL--INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV   69 (187)
Q Consensus         9 ~~l~~l~~~--~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~   69 (187)
                      +++..++..  .+...|||..||+|..+....+.   +.+++++|+++..++.++++++..++
T Consensus       200 ~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhccC
Confidence            455555543  35679999999999998887764   46899999999999999999986543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.36  E-value=0.00092  Score=52.82  Aligned_cols=102  Identities=19%  Similarity=0.251  Sum_probs=65.8

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+.++||.+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...-+.....+..+.+.+..     .+
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~~-----~g  257 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPVAAIKEIT-----DG  257 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT-----TS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCCEEecCCccCHHHHHHHhc-----CC
Confidence            34568999999875 777888888753 2479999999988877754    3431111111122222233321     34


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|+||--..   ....++.+.+.|+++|.++.-..
T Consensus       258 g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          258 GVNFALESTG---SPEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             CEEEEEECSC---CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCcEEEECCC---CHHHHHHHHHHHhcCCEEEEeCC
Confidence            7999985332   24567888999999999987544

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.35  E-value=0.0011  Score=51.74  Aligned_cols=100  Identities=18%  Similarity=0.129  Sum_probs=67.1

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+.++||-+|+|. |..+..+++..  +.+|++++.+++..+.+++    .|.. .  ++..+..++...+...   .+
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~-~--~i~~~~~~~~~~~~~~---~g  231 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARR----LGAE-V--AVNARDTDPAAWLQKE---IG  231 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCS-E--EEETTTSCHHHHHHHH---HS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH----cCCC-E--EEeCCCcCHHHHHHHh---CC
Confidence            34668999999874 88888889876  4699999999988876654    4532 1  2222222222222221   34


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|+|+....   ....++.+.+.|+++|.++.-..
T Consensus       232 ~~d~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          232 GAHGVLVTAV---SPKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             SEEEEEESSC---CHHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCEEEEeCC---CHHHHHHHHHHhccCCEEEEeCC
Confidence            7999986532   35678888999999999987543

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.28  E-value=0.0003  Score=55.84  Aligned_cols=39  Identities=10%  Similarity=0.231  Sum_probs=27.8

Q ss_pred             CCEEEEEcccccHHHHHHHh--------hC------CCCCEEEEEeCCchHHH
Q 029836           20 AKNTMEIGVFTGYSLLATAL--------AI------PDDGKILALDITKEHYE   58 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~--------~~------~~~~~v~~vd~~~~~~~   58 (187)
                      +.+|+|+||++|..|..+..        ..      ++..+|..-|.......
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn  105 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFN  105 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchH
Confidence            46899999999999988732        11      23567888887665543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.25  E-value=0.0013  Score=52.52  Aligned_cols=106  Identities=19%  Similarity=0.200  Sum_probs=67.0

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc-hHHHHHHhhcccC
Q 029836           16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA-LPLLDQLIQDEKY   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~   93 (187)
                      ...+.++||.+|+|. |..+..+++..+ ..+|+++|.+++.++.++    +.|. +-+.....+. .+.+..+..    
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa-~~i~~~~~~~~~~~~~~~~~----  251 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLS----DAGF-ETIDLRNSAPLRDQIDQILG----  251 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----TTTC-EEEETTSSSCHHHHHHHHHS----
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCC-cEEcCCCcchHHHHHHHHhC----
Confidence            344678999999875 778888888753 349999999998877664    3454 2111111222 333333320    


Q ss_pred             CCceeEEEEcCCCcc-----------cHHHHHHHHhcccCCeEEEEeCc
Q 029836           94 HGTFDFVFVDADKDN-----------YVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~-----------~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ...+|+||--.....           ....++.+.+.|++||.+++-..
T Consensus       252 g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          252 KPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             SSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             CCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence            236999985433221           13468888999999999986443

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.22  E-value=0.00015  Score=57.25  Aligned_cols=108  Identities=12%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             CCEEEEEcccccHHHHHHHhh---------------CCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836           20 AKNTMEIGVFTGYSLLATALA---------------IPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL   84 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~---------------~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   84 (187)
                      +-+|+|+||++|..+..+...               -++..+|+..|........+-+.+.......+..|+.+.+..+-
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            357899999999988765544               13357899999988877766555543211012345444443332


Q ss_pred             HHHhhcccCCCceeEEEEcCC-------Cc-----------------------------ccHHHHHHHHhcccCCeEEEE
Q 029836           85 DQLIQDEKYHGTFDFVFVDAD-------KD-----------------------------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~-------~~-----------------------------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .++.+    .+++|+|+....       ++                             +...+++.-.+.|+|||.+++
T Consensus       132 ~rlfp----~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl  207 (359)
T 1m6e_X          132 GRLFP----RNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL  207 (359)
T ss_dssp             SCCSC----TTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred             hccCC----CCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            22221    568999987642       10                             123456666799999999998


Q ss_pred             eCc
Q 029836          129 DNT  131 (187)
Q Consensus       129 ~~~  131 (187)
                      .-.
T Consensus       208 ~~~  210 (359)
T 1m6e_X          208 TIL  210 (359)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            644

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.19  E-value=0.00096  Score=47.82  Aligned_cols=100  Identities=14%  Similarity=0.095  Sum_probs=60.9

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..+.++||.+|+  |.|.....++...  +.+|++++.+++..+.+++    .+.  ... ...+..+....+.+.. ..
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~--~~~-~d~~~~~~~~~~~~~~-~~  105 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGV--EYV-GDSRSVDFADEILELT-DG  105 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCC--SEE-EETTCSTHHHHHHHHT-TT
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCC--CEE-eeCCcHHHHHHHHHHh-CC
Confidence            345689999994  5566666666654  4789999999877665533    343  111 2211112222221110 02


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+|+++....    ...++.+.+.|++||.++.-.
T Consensus       106 ~~~D~vi~~~g----~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          106 YGVDVVLNSLA----GEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             CCEEEEEECCC----THHHHHHHHTEEEEEEEEECS
T ss_pred             CCCeEEEECCc----hHHHHHHHHHhccCCEEEEEc
Confidence            36999986543    256788889999999998743

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.16  E-value=0.0017  Score=51.34  Aligned_cols=104  Identities=13%  Similarity=0.058  Sum_probs=67.2

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh---c
Q 029836           15 LKLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ---D   90 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~---~   90 (187)
                      +...+.++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++    .|..   .++.-...++...+..   .
T Consensus       178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~i~~~~~~  249 (370)
T 4ej6_A          178 SGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAEE----VGAT---ATVDPSAGDVVEAIAGPVGL  249 (370)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTCS---EEECTTSSCHHHHHHSTTSS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCC---EEECCCCcCHHHHHHhhhhc
Confidence            3455678999999864 667778888764 3499999999988877655    4442   1222222222232221   1


Q ss_pred             ccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           91 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .  .+.+|+||-..   .....++.+.+.|++||.+++-..
T Consensus       250 ~--~gg~Dvvid~~---G~~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          250 V--PGGVDVVIECA---GVAETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             S--TTCEEEEEECS---CCHHHHHHHHHHEEEEEEEEECSC
T ss_pred             c--CCCCCEEEECC---CCHHHHHHHHHHhccCCEEEEEec
Confidence            1  34799998532   234568888999999999987544

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.15  E-value=0.0036  Score=49.13  Aligned_cols=102  Identities=11%  Similarity=0.048  Sum_probs=66.6

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC---chHHHHHHhhcc
Q 029836           16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP---ALPLLDQLIQDE   91 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d---~~~~l~~~~~~~   91 (187)
                      ...+.++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|. +  .++..+   ..++...+....
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa-~--~vi~~~~~~~~~~~~~i~~~~  239 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKE----IGA-D--LVLQISKESPQEIARKVEGQL  239 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTC-S--EEEECSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCC-C--EEEcCcccccchHHHHHHHHh
Confidence            345678999999874 777888888763 2389999999988776653    454 2  223322   233333332211


Q ss_pred             cCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           92 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                        .+.+|+||-...   ....++.+.+.|++||.++.-.
T Consensus       240 --~~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          240 --GCKPEVTIECTG---AEASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             --TSCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECS
T ss_pred             --CCCCCEEEECCC---ChHHHHHHHHHhcCCCEEEEEe
Confidence              246999985432   2456778889999999998754

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.09  E-value=0.0024  Score=50.08  Aligned_cols=76  Identities=11%  Similarity=-0.002  Sum_probs=56.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      +.+++|+.||.|..++.+..+.-.-..+.++|+++.+++..+.|+.      ...++.+|..++.+....    ...+|+
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~----~~~~D~   71 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFD----RLSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHH----HHCCSE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcC----cCCcCE
Confidence            4589999999999999988762101369999999999998888874      334678888775432211    126899


Q ss_pred             EEEcCC
Q 029836          100 VFVDAD  105 (187)
Q Consensus       100 v~~d~~  105 (187)
                      ++.+.+
T Consensus        72 l~~gpP   77 (343)
T 1g55_A           72 ILMSPP   77 (343)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            999876

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.03  E-value=0.027  Score=43.54  Aligned_cols=111  Identities=8%  Similarity=-0.035  Sum_probs=72.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC--CCceEEEeCCchH-HHHHHhhcccCCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV--AHKIDFREGPALP-LLDQLIQDEKYHG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~-~l~~~~~~~~~~~   95 (187)
                      .+..||++|||.-.-...+.  .+.+.+++-|| .|..++..++.+.+.+.  ..+.+++..|..+ ++..+...+.+..
T Consensus       102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~  178 (310)
T 2uyo_A          102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  178 (310)
T ss_dssp             TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence            46789999997655433222  23347899999 69999999999986543  3678888888875 3333332221122


Q ss_pred             ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ..=++++-+.     .+....+++.+...+.+|+.|+++.+.
T Consensus       179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            3334444433     334566788888888899999998654

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.98  E-value=0.0046  Score=48.66  Aligned_cols=97  Identities=12%  Similarity=0.031  Sum_probs=64.7

Q ss_pred             hhcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC---CchHHHHHHhhc
Q 029836           16 KLINAKNTMEIG--VFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG---PALPLLDQLIQD   90 (187)
Q Consensus        16 ~~~~~~~vLeiG--~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~   90 (187)
                      ...+.++||-+|  .+.|..+..+++..  +.+|++++.+++..+.+++    .|. +  .++..   +..+.+....  
T Consensus       160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga-~--~~~~~~~~~~~~~~~~~~--  228 (362)
T 2c0c_A          160 GLSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKS----LGC-D--RPINYKTEPVGTVLKQEY--  228 (362)
T ss_dssp             CCCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTC-S--EEEETTTSCHHHHHHHHC--
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHH----cCC-c--EEEecCChhHHHHHHHhc--
Confidence            345678999999  45777888888875  4699999999887776654    443 2  12222   2222222221  


Q ss_pred             ccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           91 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                         ...+|+||-....    ..++.+.+.|+++|.++.-.
T Consensus       229 ---~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          229 ---PEGVDVVYESVGG----AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             ---TTCEEEEEECSCT----HHHHHHHHHEEEEEEEEECC
T ss_pred             ---CCCCCEEEECCCH----HHHHHHHHHHhcCCEEEEEe
Confidence               3479999854432    56788889999999988644

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=96.96  E-value=0.013  Score=45.68  Aligned_cols=103  Identities=12%  Similarity=0.018  Sum_probs=66.1

Q ss_pred             hcCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVFTG-YSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G-~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+.++||-+|+|.+ ..+..+++... +.+|+++|.+++..+.+++    .|...-+.....|..+.+..+..    ..
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t~----g~  231 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKITG----GL  231 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHTT----SS
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhcC----CC
Confidence            445689999999864 45555666554 6899999999987766554    44422233333444444443321    23


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|.++.+..   ....+..+.+.|+++|.++.-..
T Consensus       232 g~d~~~~~~~---~~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          232 GVQSAIVCAV---ARIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             CEEEEEECCS---CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CceEEEEecc---CcchhheeheeecCCceEEEEec
Confidence            6788876542   35567788899999999987543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.95  E-value=0.00038  Score=67.27  Aligned_cols=102  Identities=11%  Similarity=0.035  Sum_probs=55.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC----CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPD----DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~----~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+|||||.|+|..+..++..+..    ..+++..|+++...+.+++.++..    .+....-|..+. ..+.     .+
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~d~~~~-~~~~-----~~ 1310 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQWDPANP-APGS-----LG 1310 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECCCSSCC-CC---------
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----cccccccccccc-ccCC-----CC
Confidence            469999999999988877776642    247899999999988888887653    222211122110 0000     35


Q ss_pred             ceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           96 TFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        96 ~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +||+|+....   ..+....+..++++|+|||++++...
T Consensus      1311 ~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1311 KADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             -CCEEEEECC--------------------CCEEEEEEC
T ss_pred             ceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            7999997654   23456678889999999999988654

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.94  E-value=0.0038  Score=49.59  Aligned_cols=77  Identities=13%  Similarity=-0.071  Sum_probs=55.8

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH-HhhcccCCCceeE
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ-LIQDEKYHGTFDF   99 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~-~~~~~~~~~~~D~   99 (187)
                      .+++|+.||.|..++.+..+-  -..+.++|+++.+++..+.|+      ++..++.+|..++... +.........+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINF------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHC------TTSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhC------CCCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            579999999999999988762  245779999999988888775      3567788888765332 2100001357999


Q ss_pred             EEEcCC
Q 029836          100 VFVDAD  105 (187)
Q Consensus       100 v~~d~~  105 (187)
                      |+.+++
T Consensus        75 i~ggpP   80 (376)
T 3g7u_A           75 IIGGPP   80 (376)
T ss_dssp             EEECCC
T ss_pred             EEecCC
Confidence            999876

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.91  E-value=0.011  Score=46.27  Aligned_cols=105  Identities=10%  Similarity=0.042  Sum_probs=64.3

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe-CCchHHHHHHhhcccC
Q 029836           16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE-GPALPLLDQLIQDEKY   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~   93 (187)
                      ...+.++||-+|+|. |..+..+++..  +.+|++++.+++..+.+++    .|...-+.... .+..+.+....... .
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~i~~~~~~~-~  237 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN----CGADVTLVVDPAKEEESSIIERIRSA-I  237 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEECCTTTSCHHHHHHHHHHH-S
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCcccccHHHHHHHHhccc-c
Confidence            345678999999864 66777788875  4679999999988776653    45421111110 22222222221100 0


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ...+|+||-...   ....++.+.+.|+++|.++.-.
T Consensus       238 g~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          238 GDLPNVTIDCSG---NEKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             SSCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECS
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHHHhcCCEEEEEe
Confidence            146999985432   2446778889999999998754

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.89  E-value=0.0023  Score=50.09  Aligned_cols=105  Identities=21%  Similarity=0.277  Sum_probs=65.7

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ...+.++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...-+.....+..+.+....    ..
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~t----~g  233 (352)
T 3fpc_A          163 NIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALE----YGATDIINYKNGDIVEQILKAT----DG  233 (352)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHH----HTCCEEECGGGSCHHHHHHHHT----TT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCceEEcCCCcCHHHHHHHHc----CC
Confidence            345678999999864 667777887753 2489999999988777654    3432111111223333333331    02


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ..+|+||-...   ....++.+.+.|++||.++.-...
T Consensus       234 ~g~D~v~d~~g---~~~~~~~~~~~l~~~G~~v~~G~~  268 (352)
T 3fpc_A          234 KGVDKVVIAGG---DVHTFAQAVKMIKPGSDIGNVNYL  268 (352)
T ss_dssp             CCEEEEEECSS---CTTHHHHHHHHEEEEEEEEECCCC
T ss_pred             CCCCEEEECCC---ChHHHHHHHHHHhcCCEEEEeccc
Confidence            36999984332   224577788899999999875543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.88  E-value=0.0079  Score=47.47  Aligned_cols=100  Identities=18%  Similarity=0.261  Sum_probs=64.5

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe----CCchHHHHHHhhcc
Q 029836           17 LINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE----GPALPLLDQLIQDE   91 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~----~d~~~~l~~~~~~~   91 (187)
                      ..+.++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++    .|. +.+ +-.    .+..+.+....   
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa-~~v-i~~~~~~~~~~~~~~~~~---  259 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV----FGA-TDF-VNPNDHSEPISQVLSKMT---  259 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTC-CEE-ECGGGCSSCHHHHHHHHH---
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCC-ceE-EeccccchhHHHHHHHHh---
Confidence            34567999999763 667777888763 2389999999988877653    454 211 111    12222233322   


Q ss_pred             cCCCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836           92 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT  131 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                        .+.+|+||--..   ....++.+.+.|+++ |.++.-..
T Consensus       260 --~~g~D~vid~~g---~~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          260 --NGGVDFSLECVG---NVGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             --TSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             --CCCCCEEEECCC---CHHHHHHHHHHhhcCCcEEEEEcC
Confidence              347999985332   245678889999999 99887543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.88  E-value=0.0065  Score=47.39  Aligned_cols=103  Identities=17%  Similarity=0.107  Sum_probs=67.4

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+.++||-+|+|. |..+..+++... ..+|+++|.+++..+.+++    .|.. .+--...+..+.+.++..    ..
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~----lGa~-~~i~~~~~~~~~v~~~t~----g~  238 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALARE----VGAD-AAVKSGAGAADAIRELTG----GQ  238 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHH----TTCS-EEEECSTTHHHHHHHHHG----GG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCC-EEEcCCCcHHHHHHHHhC----CC
Confidence            44678999999864 777788887764 5799999999988877654    4542 221111222233333321    23


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .+|+||--..   ....++.+.+.|+++|.++.-...
T Consensus       239 g~d~v~d~~G---~~~~~~~~~~~l~~~G~iv~~G~~  272 (345)
T 3jv7_A          239 GATAVFDFVG---AQSTIDTAQQVVAVDGHISVVGIH  272 (345)
T ss_dssp             CEEEEEESSC---CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred             CCeEEEECCC---CHHHHHHHHHHHhcCCEEEEECCC
Confidence            7999885332   245788889999999999876543

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.88  E-value=0.0076  Score=47.59  Aligned_cols=101  Identities=20%  Similarity=0.281  Sum_probs=64.1

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe--CCchHHHHHHhhcccCC
Q 029836           18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE--GPALPLLDQLIQDEKYH   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~   94 (187)
                      .+.++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...-+....  .+..+.+..+.     .
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~v~~~~-----~  263 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITELT-----A  263 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHH-----T
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCcEEEccccccchHHHHHHHHh-----C
Confidence            4567999999763 667778888763 2489999999988877653    45421111110  12222333322     3


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT  131 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                      +.+|+||--..   ....++.+.+.|++| |.++.-..
T Consensus       264 ~g~Dvvid~~G---~~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          264 GGVDYSLDCAG---TAQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             SCBSEEEESSC---CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             CCccEEEECCC---CHHHHHHHHHHhhcCCCEEEEECC
Confidence            47999985332   245678889999999 99987543

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.87  E-value=0.02  Score=44.48  Aligned_cols=105  Identities=19%  Similarity=0.168  Sum_probs=67.4

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+.++||-+|+|. |..+..+++... ...++++|.+++.++.+++    .|...-+.....+..+....+..    ..
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~----~~  228 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRE----LR  228 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGG----GC
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcc----cC
Confidence            44678999999864 446667777764 4678999999988776654    55432222222333334333321    34


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .+|+|+-..   .....++.+.+++++||.+++-....
T Consensus       229 g~d~v~d~~---G~~~~~~~~~~~l~~~G~~v~~g~~~  263 (346)
T 4a2c_A          229 FNQLILETA---GVPQTVELAVEIAGPHAQLALVGTLH  263 (346)
T ss_dssp             SSEEEEECS---CSHHHHHHHHHHCCTTCEEEECCCCS
T ss_pred             Ccccccccc---cccchhhhhhheecCCeEEEEEeccC
Confidence            678777433   23567788889999999998765443

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.84  E-value=0.0074  Score=48.04  Aligned_cols=105  Identities=13%  Similarity=0.153  Sum_probs=66.1

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC-chHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP-ALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~l~~~~~~~~~~   94 (187)
                      ..+.++||-+|+|. |..+..+++.++ ..+|+++|.+++.++.+++    .|. +.+.....+ ..+.+..+..    .
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~v~~~t~----g  252 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA----QGF-EIADLSLDTPLHEQIAALLG----E  252 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTC-EEEETTSSSCHHHHHHHHHS----S
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHH----cCC-cEEccCCcchHHHHHHHHhC----C
Confidence            44668999999864 777888888764 3489999999988877654    454 211111111 2223333210    2


Q ss_pred             CceeEEEEcCCCcc------------cHHHHHHHHhcccCCeEEEEeCc
Q 029836           95 GTFDFVFVDADKDN------------YVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        95 ~~~D~v~~d~~~~~------------~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..+|+||--.....            ....++.+.+.|++||.+++-..
T Consensus       253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          253 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            47999985433221            23468888999999999987544

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.84  E-value=0.0084  Score=46.52  Aligned_cols=102  Identities=11%  Similarity=0.027  Sum_probs=65.3

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccC
Q 029836           16 KLINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ...+.++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+.   ++.|..   .++.....++...+....  
T Consensus       146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~---~~~g~~---~~~~~~~~~~~~~~~~~~--  215 (336)
T 4b7c_A          146 QPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLV---EELGFD---GAIDYKNEDLAAGLKREC--  215 (336)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH---HTTCCS---EEEETTTSCHHHHHHHHC--
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH---HHcCCC---EEEECCCHHHHHHHHHhc--
Confidence            3456789999997  5677777788775  469999999988776652   233431   122221122222222111  


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+.+|+||-...    ...++.+.+.|+++|.++.-..
T Consensus       216 ~~~~d~vi~~~g----~~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          216 PKGIDVFFDNVG----GEILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             TTCEEEEEESSC----HHHHHHHHTTEEEEEEEEECCC
T ss_pred             CCCceEEEECCC----cchHHHHHHHHhhCCEEEEEee
Confidence            357999886443    2468888999999999987443

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.84  E-value=0.0063  Score=48.03  Aligned_cols=99  Identities=15%  Similarity=0.238  Sum_probs=64.5

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe-----CCchHHHHHHhhc
Q 029836           17 LINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE-----GPALPLLDQLIQD   90 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~-----~d~~~~l~~~~~~   90 (187)
                      ..+.++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++    .|. +.  ++.     .+..+.+.++.  
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa-~~--vi~~~~~~~~~~~~i~~~t--  258 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE----LGA-TE--CLNPKDYDKPIYEVICEKT--  258 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----TTC-SE--EECGGGCSSCHHHHHHHHT--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCC-cE--EEecccccchHHHHHHHHh--
Confidence            34568999999863 667777887753 2489999999988877653    454 21  221     12222233321  


Q ss_pred             ccCCCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836           91 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT  131 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                         .+.+|+||--..   ....++.+.+.|+++ |.++.-..
T Consensus       259 ---~gg~Dvvid~~g---~~~~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          259 ---NGGVDYAVECAG---RIETMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             ---TSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             ---CCCCCEEEECCC---CHHHHHHHHHHHhcCCCEEEEEcc
Confidence               347999985332   245678888999999 99887543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.83  E-value=0.017  Score=45.57  Aligned_cols=96  Identities=15%  Similarity=0.178  Sum_probs=64.1

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+.++||-+|+|. |..+..+++..  +.+|++++.+++..+.+++    .|. +  .++.....+....+      .+
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~----lGa-~--~vi~~~~~~~~~~~------~~  256 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGA-D--EVVNSRNADEMAAH------LK  256 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTC-S--EEEETTCHHHHHTT------TT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC-c--EEeccccHHHHHHh------hc
Confidence            44678999999874 67777888875  4689999999998887764    343 2  22332223333333      35


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .+|+||--....   ..++.+.+.|+++|.++.-.
T Consensus       257 g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          257 SFDFILNTVAAP---HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             CEEEEEECCSSC---CCHHHHHTTEEEEEEEEECC
T ss_pred             CCCEEEECCCCH---HHHHHHHHHhccCCEEEEec
Confidence            799998543322   23566788999999988643

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.82  E-value=0.0012  Score=49.72  Aligned_cols=53  Identities=9%  Similarity=0.152  Sum_probs=41.1

Q ss_pred             ceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--c---------------ccHHHHHHHHhcccCCeEEEEe
Q 029836           72 KIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--D---------------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        72 ~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~---------------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+++++|+.+.+..+.     .+++|+||+|++.  .               .....++.+.++|+++|.+++.
T Consensus         4 ~~~l~~gD~~~~l~~l~-----~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A            4 INKIHQMNCFDFLDQVE-----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             SSSEEECCHHHHHHHSC-----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCeEEechHHHHHHhcc-----ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            45688999998888763     4689999999972  1               2245667778999999998875

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.81  E-value=0.012  Score=46.23  Aligned_cols=106  Identities=12%  Similarity=-0.020  Sum_probs=67.5

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe--CCchHHHHHHhhccc
Q 029836           16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE--GPALPLLDQLIQDEK   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~   92 (187)
                      ...+.++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++. ..    .-+....  .+..++...+.+.. 
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~l-~~----~~~~~~~~~~~~~~~~~~v~~~t-  248 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAAG-ACPLVITDIDEGRLKFAKEI-CP----EVVTHKVERLSAEESAKKIVESF-  248 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESCHHHHHHHHHH-CT----TCEEEECCSCCHHHHHHHHHHHT-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh-ch----hcccccccccchHHHHHHHHHHh-
Confidence            345678999999864 667788888763 23499999999999888764 21    2233321  12233333332211 


Q ss_pred             CCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ....+|+||--..   ....++.+.+.|++||.++.-..
T Consensus       249 ~g~g~Dvvid~~g---~~~~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          249 GGIEPAVALECTG---VESSIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             SSCCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECCC
T ss_pred             CCCCCCEEEECCC---ChHHHHHHHHHhcCCCEEEEEcc
Confidence            1347999985332   24567888899999999987543

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.79  E-value=0.0054  Score=47.57  Aligned_cols=97  Identities=12%  Similarity=0.083  Sum_probs=62.4

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe---CCchHHHHHHhhcc
Q 029836           17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE---GPALPLLDQLIQDE   91 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~---~d~~~~l~~~~~~~   91 (187)
                      ..+.+++|.+|+  |.|..+..++...  +.+|++++.+++..+.++    +.+.  ...+-.   .+..+.+....   
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~----~~g~--~~~~d~~~~~~~~~~~~~~~---  211 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLK----QIGF--DAAFNYKTVNSLEEALKKAS---  211 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTC--SEEEETTSCSCHHHHHHHHC---
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----hcCC--cEEEecCCHHHHHHHHHHHh---
Confidence            345689999997  5666777777664  469999999988776653    2343  122211   22222333321   


Q ss_pred             cCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           92 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                        .+.+|+++....    ...+..+.+.|++||.+++-.
T Consensus       212 --~~~~d~vi~~~g----~~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          212 --PDGYDCYFDNVG----GEFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             --TTCEEEEEESSC----HHHHHHHHTTEEEEEEEEECC
T ss_pred             --CCCCeEEEECCC----hHHHHHHHHHHhcCCEEEEEe
Confidence              347999986543    235788889999999998644

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.78  E-value=0.0017  Score=50.58  Aligned_cols=54  Identities=17%  Similarity=0.247  Sum_probs=42.3

Q ss_pred             CceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--c---------------ccHHHHHHHHhcccCCeEEEEe
Q 029836           71 HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--D---------------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        71 ~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~---------------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+.+++++|+.+.++.+.     .+++|+|++|++.  .               .....++.+.++|++||.+++.
T Consensus        13 ~~~~ii~gD~~~~l~~l~-----~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFP-----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SSEEEEESCHHHHGGGSC-----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhCC-----CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            468899999988776553     5689999999872  1               2456777888999999998873

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.78  E-value=0.004  Score=49.31  Aligned_cols=103  Identities=20%  Similarity=0.299  Sum_probs=66.0

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEE--eCCchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFR--EGPALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~--~~d~~~~l~~~~~~~~~   93 (187)
                      ..+.++||-+|+| .|..+..+++..+ ..+|+++|.+++.++.++    +.|...-+...  ..+..+.+..+.     
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~i~~~~-----  260 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETAK----KFGVNEFVNPKDHDKPIQEVIVDLT-----  260 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHHH----TTTCCEEECGGGCSSCHHHHHHHHT-----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCcEEEccccCchhHHHHHHHhc-----
Confidence            3456799999986 3677777887753 248999999998887665    34542111111  122223333332     


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCcC
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNTL  132 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~~  132 (187)
                      .+.+|+||--.   .....++.+.+.|++| |.+++-...
T Consensus       261 ~gg~D~vid~~---g~~~~~~~~~~~l~~g~G~iv~~G~~  297 (378)
T 3uko_A          261 DGGVDYSFECI---GNVSVMRAALECCHKGWGTSVIVGVA  297 (378)
T ss_dssp             TSCBSEEEECS---CCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             CCCCCEEEECC---CCHHHHHHHHHHhhccCCEEEEEccc
Confidence            34899998533   2346688889999996 999875543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.77  E-value=0.0095  Score=47.00  Aligned_cols=99  Identities=18%  Similarity=0.281  Sum_probs=64.1

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe-----CCchHHHHHHhhc
Q 029836           17 LINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE-----GPALPLLDQLIQD   90 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~-----~d~~~~l~~~~~~   90 (187)
                      ..+.++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++    .|. +.  ++.     .+..+.+..+.  
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa-~~--vi~~~~~~~~~~~~~~~~~--  258 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKE----VGA-TE--CVNPQDYKKPIQEVLTEMS--  258 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTC-SE--EECGGGCSSCHHHHHHHHT--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCC-ce--EecccccchhHHHHHHHHh--
Confidence            34568999999764 667777888763 2389999999988877653    454 21  221     12222333331  


Q ss_pred             ccCCCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836           91 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT  131 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                         .+.+|+||--..   ....++.+.+.|+++ |.++.-..
T Consensus       259 ---~~g~D~vid~~g---~~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          259 ---NGGVDFSFEVIG---RLDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             ---TSCBSEEEECSC---CHHHHHHHHHHBCTTTCEEEECSC
T ss_pred             ---CCCCcEEEECCC---CHHHHHHHHHHhhcCCcEEEEecc
Confidence               347999985332   245678888999999 99887543

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.74  E-value=0.033  Score=43.50  Aligned_cols=118  Identities=11%  Similarity=0.094  Sum_probs=76.0

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC--------------------CC
Q 029836           11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG--------------------VA   70 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~--------------------~~   70 (187)
                      +..++...+...|+.+|||...-...+....+ +.+++-||. |+.++.-++.+++.+                    ..
T Consensus        89 v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~-~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~  166 (334)
T 1rjd_A           89 ILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQ  166 (334)
T ss_dssp             HHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEEC
T ss_pred             HHHHHHHCCCcEEEEeCCCCccHHHHhcCcCC-CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCC
Confidence            33334335567999999999998888776544 567777777 888888788877652                    13


Q ss_pred             CceEEEeCCchH--HHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEE-EEeCc
Q 029836           71 HKIDFREGPALP--LLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVI-GYDNT  131 (187)
Q Consensus        71 ~~i~~~~~d~~~--~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~l-v~~~~  131 (187)
                      .+.+++..|..+  ++..+.....+.+...++++-+.     .+....+++.+.... ++|.+ +++-+
T Consensus       167 ~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i  234 (334)
T 1rjd_A          167 GRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPI  234 (334)
T ss_dssp             SSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred             CceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEecc
Confidence            678999999876  33332222111345667776654     344566777777766 56655 45433

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.72  E-value=0.0037  Score=48.54  Aligned_cols=100  Identities=14%  Similarity=0.069  Sum_probs=63.3

Q ss_pred             cCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           18 INAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      .+.++||-+|+  |.|..+..+++..  +.+|++++.+++.++.+++    .|. +  .++..+..++...+.... ...
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga-~--~~~~~~~~~~~~~~~~~~-~~~  216 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKE----YGA-E--YLINASKEDILRQVLKFT-NGK  216 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTC-S--EEEETTTSCHHHHHHHHT-TTS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC-c--EEEeCCCchHHHHHHHHh-CCC
Confidence            45689999993  5677777788775  4799999999888776654    443 1  122222222222221111 134


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|+||-....    ..++.+.+.|++||.++.-..
T Consensus       217 g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          217 GVDASFDSVGK----DTFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             CEEEEEECCGG----GGHHHHHHHEEEEEEEEECCC
T ss_pred             CceEEEECCCh----HHHHHHHHHhccCCEEEEEcC
Confidence            79999854432    457778889999999987543

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.72  E-value=0.0041  Score=48.46  Aligned_cols=101  Identities=15%  Similarity=0.039  Sum_probs=62.6

Q ss_pred             hcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIGVF--TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g--~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..+.++||-+|+|  .|..+..+++..  +.+|++++.+++..+.+++    .|...-+.....+..+.+....    ..
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lga~~~~~~~~~~~~~~~~~~~----~~  211 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLR----LGAAYVIDTSTAPLYETVMELT----NG  211 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TT
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----CCCcEEEeCCcccHHHHHHHHh----CC
Confidence            3456899999986  677778888765  4699999999988887765    3431111111122222222221    02


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..+|+||-....    .......+.|++||.++.-..
T Consensus       212 ~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          212 IGADAAIDSIGG----PDGNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             SCEEEEEESSCH----HHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCcEEEECCCC----hhHHHHHHHhcCCCEEEEEee
Confidence            479999864331    223344589999999987544

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.012  Score=45.89  Aligned_cols=99  Identities=13%  Similarity=-0.030  Sum_probs=64.2

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe---CCchHHHHHHhhcc
Q 029836           17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE---GPALPLLDQLIQDE   91 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~---~d~~~~l~~~~~~~   91 (187)
                      ..+.++||.+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .|..  ..+-.   .+..+.+....   
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~----~g~~--~~~d~~~~~~~~~~~~~~~---  235 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRS----IGGE--VFIDFTKEKDIVGAVLKAT---  235 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHH----TTCC--EEEETTTCSCHHHHHHHHH---
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHH----cCCc--eEEecCccHhHHHHHHHHh---
Confidence            345689999998  5677777777765  4699999998887766543    3431  11211   12222333321   


Q ss_pred             cCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           92 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                        .+.+|+|+....   ....++.+.+.|+++|.++.-..
T Consensus       236 --~~~~D~vi~~~g---~~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          236 --DGGAHGVINVSV---SEAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             --TSCEEEEEECSS---CHHHHHHHTTSEEEEEEEEECCC
T ss_pred             --CCCCCEEEECCC---cHHHHHHHHHHHhcCCEEEEEeC
Confidence              237999986542   34567888999999999987543

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.66  E-value=0.011  Score=46.66  Aligned_cols=99  Identities=18%  Similarity=0.273  Sum_probs=64.1

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe-----CCchHHHHHHhhc
Q 029836           17 LINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE-----GPALPLLDQLIQD   90 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~-----~d~~~~l~~~~~~   90 (187)
                      ..+.++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++    .|. +.  ++.     .+..+.+.++.  
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa-~~--vi~~~~~~~~~~~~v~~~~--  257 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKE----FGA-TE--CINPQDFSKPIQEVLIEMT--  257 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----HTC-SE--EECGGGCSSCHHHHHHHHT--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCC-ce--EeccccccccHHHHHHHHh--
Confidence            34567999999764 667777887753 2389999999998887754    343 21  221     12222333331  


Q ss_pred             ccCCCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836           91 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT  131 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                         .+.+|+||--..   ....++.+.+.|+++ |.++.-..
T Consensus       258 ---~~g~D~vid~~g---~~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          258 ---DGGVDYSFECIG---NVKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             ---TSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             ---CCCCCEEEECCC---cHHHHHHHHHhhccCCcEEEEEec
Confidence               347999985332   245678889999999 99987543

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.64  E-value=0.0062  Score=47.51  Aligned_cols=100  Identities=12%  Similarity=0.023  Sum_probs=63.3

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..+.++||-+|+  +.|..+..+++..  +.+|++++.+++..+.+++    .|. +.+--...+..+.+....    ..
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga-~~v~~~~~~~~~~v~~~~----~~  225 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKS----VGA-DIVLPLEEGWAKAVREAT----GG  225 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTC-SEEEESSTTHHHHHHHHT----TT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCC-cEEecCchhHHHHHHHHh----CC
Confidence            345689999996  5677888888876  4699999999988877765    343 221111122222222221    02


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..+|+||-....    ..++.+.+.|+++|.++.-..
T Consensus       226 ~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          226 AGVDMVVDPIGG----PAFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             SCEEEEEESCC------CHHHHHHTEEEEEEEEEC--
T ss_pred             CCceEEEECCch----hHHHHHHHhhcCCCEEEEEEc
Confidence            379999864432    246778889999999987543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.64  E-value=0.013  Score=45.50  Aligned_cols=101  Identities=15%  Similarity=0.045  Sum_probs=64.3

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ...+.++||-+|+| .|..+..+++..  +.+|++++.+++..+.+++    .|. +  .++.-...++...+.+.   .
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa-~--~~~d~~~~~~~~~~~~~---~  228 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGA-D--LVVNPLKEDAAKFMKEK---V  228 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTC-S--EEECTTTSCHHHHHHHH---H
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCC-C--EEecCCCccHHHHHHHH---h
Confidence            34567899999985 466777788775  4699999999988876653    443 1  12221111222222111   1


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +.+|+||-...   ....++.+.+.|+++|.++.-..
T Consensus       229 ~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          229 GGVHAAVVTAV---SKPAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             SSEEEEEESSC---CHHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEecc
Confidence            46999986432   24567788899999999986443

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.63  E-value=0.0039  Score=49.11  Aligned_cols=99  Identities=14%  Similarity=0.074  Sum_probs=64.5

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC---CchHHHHHHhhccc
Q 029836           17 LINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG---PALPLLDQLIQDEK   92 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~~~   92 (187)
                      ..+.++||-+|+|. |..+..+++..  +.+|++++.+++.++.+++    .|.. .  ++..   +..+.+..+..   
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~-~--vi~~~~~~~~~~v~~~~~---  254 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFA----LGAD-H--GINRLEEDWVERVYALTG---  254 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCS-E--EEETTTSCHHHHHHHHHT---
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHH----cCCC-E--EEcCCcccHHHHHHHHhC---
Confidence            34568999999774 66777788875  4699999999988877654    3442 1  2222   22222333221   


Q ss_pred             CCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                       ...+|+||-....    ..++.+.+.|++||.++.-...
T Consensus       255 -g~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          255 -DRGADHILEIAGG----AGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             -TCCEEEEEEETTS----SCHHHHHHHEEEEEEEEEECCC
T ss_pred             -CCCceEEEECCCh----HHHHHHHHHhhcCCEEEEEecC
Confidence             2379999854432    2366778899999999876544

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.61  E-value=0.012  Score=47.06  Aligned_cols=102  Identities=6%  Similarity=-0.002  Sum_probs=60.3

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe---CCchHHHHHHhhcccC
Q 029836           18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE---GPALPLLDQLIQDEKY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~---~d~~~~l~~~~~~~~~   93 (187)
                      .+.++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|. +  .++.   .+..+.+..+.    .
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----lGa-~--~vi~~~~~~~~~~i~~~t----~  279 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEVRRNLAKE----LGA-D--HVIDPTKENFVEAVLDYT----N  279 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTC-S--EEECTTTSCHHHHHHHHT----T
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCC-C--EEEcCCCCCHHHHHHHHh----C
Confidence            3567999999853 667777887763 3499999999988877754    343 1  2222   22222333331    0


Q ss_pred             CCceeEEEEcCCCc--ccHHHHHHHHhcccCCeEEEEeCc
Q 029836           94 HGTFDFVFVDADKD--NYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ...+|+||-.....  .....++.+++.+++||.++.-..
T Consensus       280 g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          280 GLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             TCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            23699998543222  122223333344499999987544

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.59  E-value=0.003  Score=49.11  Aligned_cols=54  Identities=11%  Similarity=0.108  Sum_probs=41.5

Q ss_pred             CceEEE-eCCchHHHHHHhhcccCCCceeEEEEcCCCc----------c----cHHHHHHHHhcccCCeEEEEe
Q 029836           71 HKIDFR-EGPALPLLDQLIQDEKYHGTFDFVFVDADKD----------N----YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        71 ~~i~~~-~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~----------~----~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...+++ ++|+.+.+..+.     .+++|+||+|++..          .    ....+..+.++|++||.+++.
T Consensus        37 ~~~~l~i~gD~l~~L~~l~-----~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~  105 (319)
T 1eg2_A           37 TTRHVYDVCDCLDTLAKLP-----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF  105 (319)
T ss_dssp             CEEEEEEECCHHHHHHTSC-----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccceEEECCcHHHHHHhCc-----cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            356788 999999887663     46899999999721          1    245667778999999999874

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.59  E-value=0.0068  Score=47.21  Aligned_cols=70  Identities=11%  Similarity=-0.061  Sum_probs=53.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      ..+++|+.||.|..++.+..+ + -..+.++|+++.+++..+.|+....        ++|..++.+..      -..+|+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a-G-~~~v~~~e~d~~a~~t~~~N~~~~~--------~~Di~~~~~~~------~~~~D~   74 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNFGEKP--------EGDITQVNEKT------IPDHDI   74 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHHSCCC--------BSCGGGSCGGG------SCCCSE
T ss_pred             CCcEEEECCCcCHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHcCCCC--------cCCHHHcCHhh------CCCCCE
Confidence            468999999999999998865 2 3568899999999999888874321        57776654332      346899


Q ss_pred             EEEcCC
Q 029836          100 VFVDAD  105 (187)
Q Consensus       100 v~~d~~  105 (187)
                      |+.+.+
T Consensus        75 l~~gpP   80 (327)
T 2c7p_A           75 LCAGFP   80 (327)
T ss_dssp             EEEECC
T ss_pred             EEECCC
Confidence            999865

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.55  E-value=0.0044  Score=47.94  Aligned_cols=100  Identities=9%  Similarity=-0.019  Sum_probs=63.4

Q ss_pred             cCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           18 INAKNTMEIG--VFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG--~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      .+.++||-+|  .+.|..+..+++..  +.+|++++.+++.++.+++    .|..   .++..+..++...+.+.. ...
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~-~~~  208 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAKA----LGAW---ETIDYSHEDVAKRVLELT-DGK  208 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHT-TTC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHh-CCC
Confidence            4567999998  35677777788765  4699999999988877764    3431   122222222222222111 024


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|+||-....    ..+..+.+.|++||.++.-..
T Consensus       209 g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          209 KCPVVYDGVGQ----DTWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             CEEEEEESSCG----GGHHHHHTTEEEEEEEEECCC
T ss_pred             CceEEEECCCh----HHHHHHHHHhcCCCEEEEEec
Confidence            79998864432    456778899999999987543

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.55  E-value=0.013  Score=46.17  Aligned_cols=97  Identities=19%  Similarity=0.156  Sum_probs=62.9

Q ss_pred             CCCEEEEEc-c-cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           19 NAKNTMEIG-V-FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        19 ~~~~vLeiG-~-g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      +.++||-+| + +.|..+..+++.+. +.+|++++.+++..+.+++    .|. +.  ++... .++...+.+..  .+.
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~~----lGa-d~--vi~~~-~~~~~~v~~~~--~~g  239 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVKS----LGA-HH--VIDHS-KPLAAEVAALG--LGA  239 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHHH----TTC-SE--EECTT-SCHHHHHHTTC--SCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHH----cCC-CE--EEeCC-CCHHHHHHHhc--CCC
Confidence            456899998 3 45778888888643 5799999999988777654    453 21  22211 12223332211  457


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+||-..   .....++.+.+.|+++|.++.-
T Consensus       240 ~Dvvid~~---g~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          240 PAFVFSTT---HTDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEEECS---CHHHHHHHHHHHSCTTCEEEEC
T ss_pred             ceEEEECC---CchhhHHHHHHHhcCCCEEEEE
Confidence            99888532   2345678888999999999864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.52  E-value=0.028  Score=37.79  Aligned_cols=93  Identities=6%  Similarity=-0.022  Sum_probs=57.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCce
Q 029836           21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGTF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~   97 (187)
                      .+|+-+|+  |..+..+++.+. .+..|+++|.+++.++.+++        ..+.++.+|+.+  .+....     -...
T Consensus         8 ~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~--------~g~~~i~gd~~~~~~l~~a~-----i~~a   72 (140)
T 3fwz_A            8 NHALLVGY--GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE--------RGVRAVLGNAANEEIMQLAH-----LECA   72 (140)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTCEEEESCTTSHHHHHHTT-----GGGC
T ss_pred             CCEEEECc--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------cCCCEEECCCCCHHHHHhcC-----cccC
Confidence            57888887  555555554442 25789999999988776553        245678888754  344321     2478


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+|++-.+........-...+.+.++..++.
T Consensus        73 d~vi~~~~~~~~n~~~~~~a~~~~~~~~iia  103 (140)
T 3fwz_A           73 KWLILTIPNGYEAGEIVASARAKNPDIEIIA  103 (140)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             CEEEEECCChHHHHHHHHHHHHHCCCCeEEE
Confidence            9998765433222223334566677777664

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=96.51  E-value=0.027  Score=38.80  Aligned_cols=114  Identities=10%  Similarity=0.088  Sum_probs=74.4

Q ss_pred             HHHHHHHHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            8 AQFFSMLLKLIN--AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         8 ~~~l~~l~~~~~--~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      ...|...+....  +.-|||+|-|.|..=-.+-+.+| +-+++.+|-.-....        ...++.-.+++||..+.++
T Consensus        27 R~~L~~a~~~v~~~~GpVlElGLGNGRTydHLRe~~P-~R~I~vfDR~~~~hp--------~~~P~~e~~ilGdi~~tL~   97 (174)
T 3iht_A           27 RACLEHAIAQTAGLSGPVYELGLGNGRTYHHLRQHVQ-GREIYVFERAVASHP--------DSTPPEAQLILGDIRETLP   97 (174)
T ss_dssp             HHHHHHHHHHTTTCCSCEEEECCTTCHHHHHHHHHCC-SSCEEEEESSCCCCG--------GGCCCGGGEEESCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCceEEecCCCChhHHHHHHhCC-CCcEEEEEeeeccCC--------CCCCchHheecccHHHHHH
Confidence            344555555443  45899999999999888999998 788999996432110        0123556789999999888


Q ss_pred             HHhhcccCCCceeEEEEcCCC--ccc----HHHH-HHHHhcccCCeEEEEeCcC
Q 029836           86 QLIQDEKYHGTFDFVFVDADK--DNY----VNYH-KRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~~--~~~----~~~~-~~~~~~L~~gG~lv~~~~~  132 (187)
                      ...+.-  ..+.-++..|...  ++.    ..++ ..+.++|.+||+++-..-+
T Consensus        98 ~~~~r~--g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl  149 (174)
T 3iht_A           98 ATLERF--GATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM  149 (174)
T ss_dssp             HHHHHH--CSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred             HHHHhc--CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence            743211  3466677777541  111    1222 3445899999999965544

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.50  E-value=0.007  Score=47.41  Aligned_cols=100  Identities=15%  Similarity=0.158  Sum_probs=63.5

Q ss_pred             hcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIG--VFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG--~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..+.++||-+|  .|.|..+..+++..  +.+|++++.+++..+.+++    .|...-+.....+..+.+....     .
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~~~~~-----~  233 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACER----LGAKRGINYRSEDFAAVIKAET-----G  233 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH-----S
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEeCCchHHHHHHHHHh-----C
Confidence            34567999995  34677777888775  4799999999988877765    3431111111122222233221     3


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +.+|+||-....    ..+..+.+.|+++|.++.-..
T Consensus       234 ~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          234 QGVDIILDMIGA----AYFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             SCEEEEEESCCG----GGHHHHHHTEEEEEEEEECCC
T ss_pred             CCceEEEECCCH----HHHHHHHHHhccCCEEEEEEe
Confidence            579998865432    256778889999999987543

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.47  E-value=0.0085  Score=46.46  Aligned_cols=99  Identities=12%  Similarity=0.154  Sum_probs=62.3

Q ss_pred             cCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           18 INAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      .+.++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .+...-+.....+..+.+.....    ..
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~i~~~~~----~~  213 (333)
T 1wly_A          144 KPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARK----LGCHHTINYSTQDFAEVVREITG----GK  213 (333)
T ss_dssp             CTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHHT----TC
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCCHHHHHHHHHHhC----CC
Confidence            45679999994  6777778888765  4799999999887776654    24311111111122222222211    24


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .+|++|-....    ..++.+.+.|+++|.++.-.
T Consensus       214 ~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          214 GVDVVYDSIGK----DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             CEEEEEECSCT----TTHHHHHHTEEEEEEEEECC
T ss_pred             CCeEEEECCcH----HHHHHHHHhhccCCEEEEEe
Confidence            69999865432    45677889999999988744

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.45  E-value=0.0088  Score=46.56  Aligned_cols=98  Identities=12%  Similarity=0.048  Sum_probs=63.9

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC---CchHHHHHHhhcc
Q 029836           17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG---PALPLLDQLIQDE   91 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~~   91 (187)
                      ..+.++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++   +.|.  ...+-..   +..+.+....   
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~---~~g~--~~~~d~~~~~~~~~~~~~~~---  222 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKT---KFGF--DDAFNYKEESDLTAALKRCF---  222 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TSCC--SEEEETTSCSCSHHHHHHHC---
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCC--ceEEecCCHHHHHHHHHHHh---
Confidence            345689999996  5677777788765  4699999999887766642   2343  1112111   2333333331   


Q ss_pred             cCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           92 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                        .+.+|+|+-...    ...++.+.+.|++||.++.-.
T Consensus       223 --~~~~d~vi~~~g----~~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          223 --PNGIDIYFENVG----GKMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             --TTCEEEEEESSC----HHHHHHHHTTEEEEEEEEECC
T ss_pred             --CCCCcEEEECCC----HHHHHHHHHHHhcCCEEEEEc
Confidence              246999986543    246788889999999998743

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.39  E-value=0.0045  Score=47.47  Aligned_cols=54  Identities=13%  Similarity=0.116  Sum_probs=39.8

Q ss_pred             CceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc---c--------------------cHHHHHHHHhcccCCeEEE
Q 029836           71 HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD---N--------------------YVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        71 ~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~---~--------------------~~~~~~~~~~~L~~gG~lv  127 (187)
                      .+++++++|+.+.++.+.     +++||+|+.|++.-   .                    +..++..+.++|+|||.++
T Consensus        20 ~~~~i~~gD~~~~l~~l~-----~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~   94 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFP-----EASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLV   94 (297)
T ss_dssp             -CEEEEESCHHHHHTTSC-----TTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCCEEEECcHHHHHhhCC-----CCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence            467999999998776552     46899999998721   1                    1235567789999999887


Q ss_pred             Ee
Q 029836          128 YD  129 (187)
Q Consensus       128 ~~  129 (187)
                      +.
T Consensus        95 i~   96 (297)
T 2zig_A           95 IV   96 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.38  E-value=0.0063  Score=47.06  Aligned_cols=99  Identities=13%  Similarity=0.032  Sum_probs=61.7

Q ss_pred             cCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           18 INAKNTMEIG--VFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG--~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      .+.++||-+|  +|.|..+..+++..  +.+|++++.+++..+.+++    .+.  .. ++..+..+....+.... ...
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~----~g~--~~-~~~~~~~~~~~~~~~~~-~~~  208 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGA--WQ-VINYREEDLVERLKEIT-GGK  208 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTC--SE-EEETTTSCHHHHHHHHT-TTC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCC--CE-EEECCCccHHHHHHHHh-CCC
Confidence            3568999999  45666677777664  4699999999888777654    233  11 22211112222221110 023


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .+|++|....    ...++.+.+.|+++|.++.-.
T Consensus       209 ~~D~vi~~~g----~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          209 KVRVVYDSVG----RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             CEEEEEECSC----GGGHHHHHHTEEEEEEEEECC
T ss_pred             CceEEEECCc----hHHHHHHHHHhcCCCEEEEEe
Confidence            6999986554    345678889999999988644

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=96.27  E-value=0.018  Score=44.99  Aligned_cols=101  Identities=13%  Similarity=0.020  Sum_probs=62.7

Q ss_pred             hcCC--CEEEEEcc--cccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcc
Q 029836           17 LINA--KNTMEIGV--FTGYSLLATALAIPDDG-KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDE   91 (187)
Q Consensus        17 ~~~~--~~vLeiG~--g~G~~~~~l~~~~~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~   91 (187)
                      ..+.  ++||-+|+  |.|..+..+++..  +. +|++++.+++..+.+++.   .|..  . ++..+..+....+....
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~~---~g~~--~-~~d~~~~~~~~~~~~~~  227 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTSE---LGFD--A-AINYKKDNVAEQLRESC  227 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHT---SCCS--E-EEETTTSCHHHHHHHHC
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHH---cCCc--e-EEecCchHHHHHHHHhc
Confidence            4456  89999996  5566677777764  45 999999998776655432   3431  1 22211112222221111


Q ss_pred             cCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           92 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                        .+.+|+++-...    ...++.+.+.|++||.++.-..
T Consensus       228 --~~~~d~vi~~~G----~~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          228 --PAGVDVYFDNVG----GNISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             --TTCEEEEEESCC----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             --CCCCCEEEECCC----HHHHHHHHHHhccCcEEEEECC
Confidence              237999986543    2667888899999999987443

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.26  E-value=0.013  Score=45.68  Aligned_cols=99  Identities=16%  Similarity=0.122  Sum_probs=63.3

Q ss_pred             hcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC--chHHHHHHhhccc
Q 029836           17 LINAKNTMEIGVF--TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP--ALPLLDQLIQDEK   92 (187)
Q Consensus        17 ~~~~~~vLeiG~g--~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d--~~~~l~~~~~~~~   92 (187)
                      ..+.++||.+|+|  .|..+..+++... +.+|++++.+++..+.+++    .|. + ..+-..+  ..+.+..+.    
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~-Ga~Vi~~~~~~~~~~~~~~----~g~-~-~~~~~~~~~~~~~~~~~~----  236 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGA-D-YVINASMQDPLAEIRRIT----  236 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTC-S-EEEETTTSCHHHHHHHHT----
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCC-C-EEecCCCccHHHHHHHHh----
Confidence            4466899999987  5556667776641 3689999999988777654    343 1 1221122  212233331    


Q ss_pred             CC-CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           93 YH-GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        93 ~~-~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                       . +.+|++|-...   ....++.+.+.|+++|.++.-.
T Consensus       237 -~~~~~d~vi~~~g---~~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          237 -ESKGVDAVIDLNN---SEKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             -TTSCEEEEEESCC---CHHHHTTGGGGEEEEEEEEECC
T ss_pred             -cCCCceEEEECCC---CHHHHHHHHHHHhcCCEEEEEC
Confidence             2 57999986543   2446778889999999998743

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.25  E-value=0.033  Score=43.33  Aligned_cols=101  Identities=15%  Similarity=0.075  Sum_probs=64.6

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc-hHHHHHHhhcccC
Q 029836           16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA-LPLLDQLIQDEKY   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~   93 (187)
                      .. +.++||-+|+|. |..+..+++...++.+|++++.+++..+.+++    .|. +.  ++.-+. .+....+..    
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa-~~--vi~~~~~~~~~~~~~~----  235 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGA-DY--VSEMKDAESLINKLTD----  235 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTC-SE--EECHHHHHHHHHHHHT----
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCC-CE--EeccccchHHHHHhhc----
Confidence            44 778999999863 66777788775113689999999988877654    343 21  221111 223333321    


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ...+|+||--..   ....++.+.+.|+++|.++.-..
T Consensus       236 g~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          236 GLGASIAIDLVG---TEETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             TCCEEEEEESSC---CHHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCccEEEECCC---ChHHHHHHHHHhhcCCEEEEeCC
Confidence            237999985432   24467888899999999987443

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.24  E-value=0.043  Score=42.91  Aligned_cols=101  Identities=10%  Similarity=0.067  Sum_probs=62.7

Q ss_pred             HhhcCC------CEEEEEccc-ccHHH-HHHH-hhCCCCCEEEEEeCCch---HHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836           15 LKLINA------KNTMEIGVF-TGYSL-LATA-LAIPDDGKILALDITKE---HYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus        15 ~~~~~~------~~vLeiG~g-~G~~~-~~l~-~~~~~~~~v~~vd~~~~---~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +...+.      ++||-+|+| .|..+ ..++ +..+ ..+|++++.+++   ..+.+++    .|. +.+.....+..+
T Consensus       162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~G-a~~Vi~~~~~~~~~~~~~~~~~----lGa-~~v~~~~~~~~~  235 (357)
T 2b5w_A          162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKG-YENLYCLGRRDRPDPTIDIIEE----LDA-TYVDSRQTPVED  235 (357)
T ss_dssp             HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTC-CCEEEEEECCCSSCHHHHHHHH----TTC-EEEETTTSCGGG
T ss_pred             cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcC-CcEEEEEeCCcccHHHHHHHHH----cCC-cccCCCccCHHH
Confidence            345566      899999974 35566 7777 6653 234999999987   7766653    443 222111122223


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                       +..+      .+.+|+||--..   ....++.+.+.|+++|.++.-..
T Consensus       236 -i~~~------~gg~Dvvid~~g---~~~~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          236 -VPDV------YEQMDFIYEATG---FPKHAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             -HHHH------SCCEEEEEECSC---CHHHHHHHHHHEEEEEEEEECCC
T ss_pred             -HHHh------CCCCCEEEECCC---ChHHHHHHHHHHhcCCEEEEEeC
Confidence             3333      137999984332   23467888899999999987543

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.20  E-value=0.043  Score=42.75  Aligned_cols=95  Identities=21%  Similarity=0.169  Sum_probs=61.5

Q ss_pred             CCCEEEEEc-c-cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           19 NAKNTMEIG-V-FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        19 ~~~~vLeiG-~-g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      +.++||-+| + +.|..+..+++..  +.+|++++.+++..+.+++    .|. +.+--...+..+.+...   .  .+.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa-~~vi~~~~~~~~~~~~~---~--~~g  217 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKK----MGA-DIVLNHKESLLNQFKTQ---G--IEL  217 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHH----HTC-SEEECTTSCHHHHHHHH---T--CCC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCC-cEEEECCccHHHHHHHh---C--CCC
Confidence            578999994 3 3566777788775  4699999999988877765    343 21111112222223222   1  457


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +|+||-..   .....++.+.+.|+++|.++.
T Consensus       218 ~Dvv~d~~---g~~~~~~~~~~~l~~~G~iv~  246 (346)
T 3fbg_A          218 VDYVFCTF---NTDMYYDDMIQLVKPRGHIAT  246 (346)
T ss_dssp             EEEEEESS---CHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccEEEECC---CchHHHHHHHHHhccCCEEEE
Confidence            99988532   234567888899999999975

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.18  E-value=0.013  Score=46.39  Aligned_cols=102  Identities=11%  Similarity=0.057  Sum_probs=63.6

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC---chHHHHHHhhcccC
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP---ALPLLDQLIQDEKY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d---~~~~l~~~~~~~~~   93 (187)
                      .+.++||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++    .|. +  .++..+   ..++...+.... .
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----lGa-~--~vi~~~~~~~~~~~~~v~~~~-~  264 (380)
T 1vj0_A          194 FAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGA-D--LTLNRRETSVEERRKAIMDIT-H  264 (380)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTC-S--EEEETTTSCHHHHHHHHHHHT-T
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHH----cCC-c--EEEeccccCcchHHHHHHHHh-C
Confidence            456799999965 4667777888753 2599999999988776653    454 2  223322   223333222111 0


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ...+|+||-....   ...++.+.+.|+++|.++.-..
T Consensus       265 g~g~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          265 GRGADFILEATGD---SRALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             TSCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCcEEEECCCC---HHHHHHHHHHHhcCCEEEEEec
Confidence            2369999854321   2356778889999999987543

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.13  E-value=0.011  Score=46.12  Aligned_cols=100  Identities=10%  Similarity=0.076  Sum_probs=63.4

Q ss_pred             cCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           18 INAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      .+.++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .|. ..  ++..+..++...+.... ...
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~ga-~~--~~d~~~~~~~~~~~~~~-~~~  234 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKA----LGA-DE--TVNYTHPDWPKEVRRLT-GGK  234 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTC-SE--EEETTSTTHHHHHHHHT-TTT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCC-CE--EEcCCcccHHHHHHHHh-CCC
Confidence            35679999997  5777888888775  4699999999988877754    343 21  22221112222221110 024


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|+||-... .   ..++.+.+.|+++|.++.-..
T Consensus       235 ~~d~vi~~~g-~---~~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          235 GADKVVDHTG-A---LYFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             CEEEEEESSC-S---SSHHHHHHHEEEEEEEEESSC
T ss_pred             CceEEEECCC-H---HHHHHHHHhhccCCEEEEEec
Confidence            7999986554 2   246677889999999887443

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.09  E-value=0.035  Score=43.23  Aligned_cols=93  Identities=15%  Similarity=0.205  Sum_probs=63.1

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ...+.++||-+|+|. |..+..+++..  +.+|++++.+++..+.+++    .|. +.  ++ .+. +.   +      .
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa-~~--v~-~~~-~~---~------~  232 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALS----MGV-KH--FY-TDP-KQ---C------K  232 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHH----TTC-SE--EE-SSG-GG---C------C
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHh----cCC-Ce--ec-CCH-HH---H------h
Confidence            345678999999864 77778888876  4699999999998877654    453 22  22 332 11   1      2


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..+|+||--....   ..++.+.+.|+++|.++.-..
T Consensus       233 ~~~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          233 EELDFIISTIPTH---YDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             SCEEEEEECCCSC---CCHHHHHTTEEEEEEEEECCC
T ss_pred             cCCCEEEECCCcH---HHHHHHHHHHhcCCEEEEECC
Confidence            3799998543322   236677889999999987543

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.00  E-value=0.028  Score=44.04  Aligned_cols=99  Identities=16%  Similarity=0.101  Sum_probs=62.4

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch-HHHHHHhhcccC
Q 029836           16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL-PLLDQLIQDEKY   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~l~~~~~~~~~   93 (187)
                      ...+.++||-+|+| .|..+..+++..  +.+|++++.+++..+.+++    .|. +.  ++..+.. ++...+      
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~----lGa-~~--v~~~~~~~~~~~~~------  240 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK----MGA-DH--YIATLEEGDWGEKY------  240 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTC-SE--EEEGGGTSCHHHHS------
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH----cCC-CE--EEcCcCchHHHHHh------
Confidence            34467899999974 366777788765  4689999999988877765    343 22  2222111 233333      


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .+.+|+||--.... ....++.+.+.|++||.++.-.
T Consensus       241 ~~~~D~vid~~g~~-~~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          241 FDTFDLIVVCASSL-TDIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             CSCEEEEEECCSCS-TTCCTTTGGGGEEEEEEEEECC
T ss_pred             hcCCCEEEECCCCC-cHHHHHHHHHHhcCCCEEEEec
Confidence            35799998543320 0123456678999999998644

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.00  E-value=0.024  Score=44.36  Aligned_cols=100  Identities=16%  Similarity=0.099  Sum_probs=62.2

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..+.++||-+|+  |.|..+..+++..  +.+|++++.+++..+.++    +.|..   .++..+..++...+.... ..
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~----~~ga~---~~~d~~~~~~~~~~~~~~-~~  237 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVL----QNGAH---EVFNHREVNYIDKIKKYV-GE  237 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCS---EEEETTSTTHHHHHHHHH-CT
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHH----HcCCC---EEEeCCCchHHHHHHHHc-CC
Confidence            345689999996  5666777777765  479999999988776554    34431   122222222222221111 02


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+|++|-...    ...+..+.+.|+++|.++.-.
T Consensus       238 ~~~D~vi~~~G----~~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          238 KGIDIIIEMLA----NVNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             TCEEEEEESCH----HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCcEEEEECCC----hHHHHHHHHhccCCCEEEEEe
Confidence            37999986442    235677889999999998744

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.00  E-value=0.025  Score=44.07  Aligned_cols=97  Identities=11%  Similarity=0.032  Sum_probs=62.1

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC---CchHHHHHHhhcccCC
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG---PALPLLDQLIQDEKYH   94 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~~~~~   94 (187)
                      +.++||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++    .|. +.  ++..   +..+.+.++..    .
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~~~~~~~~~~~~----~Ga-~~--~~~~~~~~~~~~v~~~~~----g  234 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASG-AYPVIVSEPSDFRRELAKK----VGA-DY--VINPFEEDVVKEVMDITD----G  234 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEECSCHHHHHHHHH----HTC-SE--EECTTTSCHHHHHHHHTT----T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCC-CE--EECCCCcCHHHHHHHHcC----C
Confidence            66899999985 3667777787753 2389999999888776653    343 11  2222   22222222210    2


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+|+||-...   ....++.+.+.|+++|.++.-.
T Consensus       235 ~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          235 NGVDVFLEFSG---APKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             SCEEEEEECSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCEEEECCC---CHHHHHHHHHHHhcCCEEEEEc
Confidence            36999985432   2456788889999999988744

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.98  E-value=0.032  Score=42.75  Aligned_cols=77  Identities=14%  Similarity=0.106  Sum_probs=53.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGK-ILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~-v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ...+++|+-||.|..+.-+..+ +-... +.++|+++.+.+..+.|+      +...+..+|..++.+.....   .+.+
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~------~~~~~~~~DI~~i~~~~i~~---~~~~   84 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH------QGKIMYVGDVRSVTQKHIQE---WGPF   84 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT------TTCEEEECCGGGCCHHHHHH---TCCC
T ss_pred             CCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC------CCCceeCCChHHccHHHhcc---cCCc
Confidence            3458999999999999888765 21222 699999999887777665      23467788887754432211   2468


Q ss_pred             eEEEEcCC
Q 029836           98 DFVFVDAD  105 (187)
Q Consensus        98 D~v~~d~~  105 (187)
                      |+++...+
T Consensus        85 Dll~ggpP   92 (295)
T 2qrv_A           85 DLVIGGSP   92 (295)
T ss_dssp             SEEEECCC
T ss_pred             CEEEecCC
Confidence            99998754

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.95  E-value=0.037  Score=43.10  Aligned_cols=96  Identities=17%  Similarity=0.089  Sum_probs=61.7

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..+.++||-+|+  +.|..+..+++..  +.+|+++ .+++.++.+++    .|... +. ...+..+.+.....    .
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~~~----lGa~~-i~-~~~~~~~~~~~~~~----~  214 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT-ARGSDLEYVRD----LGATP-ID-ASREPEDYAAEHTA----G  214 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE-ECHHHHHHHHH----HTSEE-EE-TTSCHHHHHHHHHT----T
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE-eCHHHHHHHHH----cCCCE-ec-cCCCHHHHHHHHhc----C
Confidence            345689999993  4677888888875  4699999 78877666543    45422 22 22223333333221    3


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+|+||-...    ...++.+.+.|+++|.++.-
T Consensus       215 ~g~D~vid~~g----~~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          215 QGFDLVYDTLG----GPVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             SCEEEEEESSC----THHHHHHHHHEEEEEEEEES
T ss_pred             CCceEEEECCC----cHHHHHHHHHHhcCCeEEEE
Confidence            47998885433    24677888999999999864

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.84  E-value=0.083  Score=41.49  Aligned_cols=95  Identities=18%  Similarity=0.156  Sum_probs=59.2

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      +.++||-+|+|. |..+..+++..  +.+|++++.+++..+.+++   +.|. +  .++..+..+.+...      .+.+
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~---~lGa-~--~v~~~~~~~~~~~~------~~~~  252 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEALK---NFGA-D--SFLVSRDQEQMQAA------AGTL  252 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHH---TSCC-S--EEEETTCHHHHHHT------TTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---hcCC-c--eEEeccCHHHHHHh------hCCC
Confidence            668999999752 55666677765  4699999999887766542   3343 2  22222222333333      3579


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      |+||-......   .++.+.+.|+++|.++.-.
T Consensus       253 D~vid~~g~~~---~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          253 DGIIDTVSAVH---PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             EEEEECCSSCC---CSHHHHHHEEEEEEEEECC
T ss_pred             CEEEECCCcHH---HHHHHHHHHhcCCEEEEEc
Confidence            99985443221   2345667889999988643

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.82  E-value=0.081  Score=41.12  Aligned_cols=77  Identities=9%  Similarity=-0.070  Sum_probs=53.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEE-EEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKI-LALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v-~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ++.+++|+.||.|..+.-+..+--+...+ .++|+++.+++..+.|+...       ++++|..++.+....    ...+
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~~~i~----~~~~   77 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISIKQIE----SLNC   77 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCHHHHH----HTCC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCHHHhc----cCCC
Confidence            34589999999999999887652111356 79999999999888887431       456777654332211    1268


Q ss_pred             eEEEEcCCC
Q 029836           98 DFVFVDADK  106 (187)
Q Consensus        98 D~v~~d~~~  106 (187)
                      |+++...+.
T Consensus        78 Dil~ggpPC   86 (327)
T 3qv2_A           78 NTWFMSPPC   86 (327)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEecCCc
Confidence            999987663

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=95.77  E-value=0.16  Score=39.95  Aligned_cols=98  Identities=10%  Similarity=0.059  Sum_probs=61.6

Q ss_pred             cCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           18 INAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      .++++||-+|+  +.|..+..+++..  +.+|+++. +++..+.++    +.|...-+.....+..+.+..+.     .+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~--Ga~Vi~~~-~~~~~~~~~----~lGa~~vi~~~~~~~~~~v~~~t-----~g  230 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLS--GYIPIATC-SPHNFDLAK----SRGAEEVFDYRAPNLAQTIRTYT-----KN  230 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHH----HTTCSEEEETTSTTHHHHHHHHT-----TT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe-CHHHHHHHH----HcCCcEEEECCCchHHHHHHHHc-----cC
Confidence            45679999998  3788888899876  46888885 777766554    45542111111223223333331     34


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcc-cCCeEEEEeC
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELV-KVGGVIGYDN  130 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L-~~gG~lv~~~  130 (187)
                      .+|+||-...   ....++.+.+.| ++||.++.-.
T Consensus       231 ~~d~v~d~~g---~~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          231 NLRYALDCIT---NVESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCCEEEESSC---SHHHHHHHHHHSCTTCEEEEESS
T ss_pred             CccEEEECCC---chHHHHHHHHHhhcCCCEEEEEe
Confidence            6999884322   245677788888 6999998754

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.68  E-value=0.052  Score=42.44  Aligned_cols=100  Identities=5%  Similarity=-0.055  Sum_probs=61.5

Q ss_pred             cCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           18 INAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      .+.++||-+|+  |.|..+..+++..  +.+|++++.+++.++.+++    .|.  .. ++..+..++...+.... ...
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~g~--~~-~~~~~~~~~~~~~~~~~-~~~  230 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEK----LGA--AA-GFNYKKEDFSEATLKFT-KGA  230 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTC--SE-EEETTTSCHHHHHHHHT-TTS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCC--cE-EEecCChHHHHHHHHHh-cCC
Confidence            45679999983  5666777777764  4799999999988777643    343  11 22222112222221110 024


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|++|-.....    .+..+.+.|+++|.++.-..
T Consensus       231 ~~d~vi~~~G~~----~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          231 GVNLILDCIGGS----YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             CEEEEEESSCGG----GHHHHHHHEEEEEEEEECCC
T ss_pred             CceEEEECCCch----HHHHHHHhccCCCEEEEEec
Confidence            699998654322    46677889999999987543

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.62  E-value=0.06  Score=40.99  Aligned_cols=93  Identities=16%  Similarity=0.152  Sum_probs=62.3

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc-hHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA-LPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~   93 (187)
                      ..+.++||-+|+  +.|..+..+++..  +.+|++++.+++..+.+++    .|. +  .++..+. .++...+      
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga-~--~~~~~~~~~~~~~~~------  187 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGA-E--EAATYAEVPERAKAW------  187 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTC-S--EEEEGGGHHHHHHHT------
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCC-C--EEEECCcchhHHHHh------
Confidence            345689999997  5677788888875  4699999999988877654    343 2  1222221 2232222      


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                       +.+|+||- ...    ..++.+.+.|+++|.++.-.
T Consensus       188 -~~~d~vid-~g~----~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          188 -GGLDLVLE-VRG----KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             -TSEEEEEE-CSC----TTHHHHHTTEEEEEEEEEC-
T ss_pred             -cCceEEEE-CCH----HHHHHHHHhhccCCEEEEEe
Confidence             46999987 543    35678889999999988643

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.60  E-value=0.031  Score=43.63  Aligned_cols=76  Identities=14%  Similarity=0.038  Sum_probs=53.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      +.+++|+.||.|..+.-+..+--....+.++|+++.+.+..+.|+.      ...++.+|..++.+....    ...+|+
T Consensus         3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~----~~~~D~   72 (333)
T 4h0n_A            3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIK----KWNVDT   72 (333)
T ss_dssp             CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHH----HTTCCE
T ss_pred             CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhc----cCCCCE
Confidence            3479999999999999887652111357899999999888777763      334667887765433211    126899


Q ss_pred             EEEcCC
Q 029836          100 VFVDAD  105 (187)
Q Consensus       100 v~~d~~  105 (187)
                      ++...+
T Consensus        73 l~ggpP   78 (333)
T 4h0n_A           73 ILMSPP   78 (333)
T ss_dssp             EEECCC
T ss_pred             EEecCC
Confidence            998765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.54  E-value=0.073  Score=35.55  Aligned_cols=92  Identities=15%  Similarity=0.067  Sum_probs=54.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCc
Q 029836           20 AKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGT   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~   96 (187)
                      .++++-+|+  |.++..+++.+. .+.+|+++|.+++.++.+++        ..+.++.+|..+  .+....     -..
T Consensus         6 ~~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~~~-----~~~   70 (141)
T 3llv_A            6 RYEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED--------EGFDAVIADPTDESFYRSLD-----LEG   70 (141)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTCEEEECCTTCHHHHHHSC-----CTT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--------CCCcEEECCCCCHHHHHhCC-----ccc
Confidence            457999988  556666655442 24689999999987765543        235677787754  333321     346


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      .|+|++-.+........-...+.+. ...++
T Consensus        71 ~d~vi~~~~~~~~n~~~~~~a~~~~-~~~ii  100 (141)
T 3llv_A           71 VSAVLITGSDDEFNLKILKALRSVS-DVYAI  100 (141)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHHC-CCCEE
T ss_pred             CCEEEEecCCHHHHHHHHHHHHHhC-CceEE
Confidence            8999876542222222333334445 44444

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.50  E-value=0.013  Score=45.57  Aligned_cols=94  Identities=12%  Similarity=0.058  Sum_probs=61.0

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC---CchHHHHHHhhcccC
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDG-KILALDITKEHYEKGLPIIQKAGVAHKIDFREG---PALPLLDQLIQDEKY   93 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~~~~   93 (187)
                      +.++||-+|+| .|..+..+++..  +. +|++++.+++..+.+++.  .    +.  ++..   +..+.+..+.     
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~l--a----~~--v~~~~~~~~~~~~~~~~-----  228 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRAS--GAGPILVSDPNPYRLAFARPY--A----DR--LVNPLEEDLLEVVRRVT-----  228 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHGGGTTT--C----SE--EECTTTSCHHHHHHHHH-----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh--H----Hh--ccCcCccCHHHHHHHhc-----
Confidence            67899999974 366777788775  35 899999998877766542  1    11  2221   2222233221     


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ...+|+||--..   ....++.+.+.|+++|.++.-.
T Consensus       229 ~~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          229 GSGVEVLLEFSG---NEAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             SSCEEEEEECSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHHHhcCCEEEEEe
Confidence            246999985432   2456788889999999988644

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.33  E-value=0.075  Score=41.57  Aligned_cols=95  Identities=15%  Similarity=0.209  Sum_probs=59.3

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      +.++||-+|+| .|..+..+++..  +.+|++++.+++..+.+++   +.|. +.  ++..+..+.+...      .+.+
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~~---~lGa-~~--vi~~~~~~~~~~~------~~g~  245 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSNKKREEALQ---DLGA-DD--YVIGSDQAKMSEL------ADSL  245 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSTTHHHHHHT---TSCC-SC--EEETTCHHHHHHS------TTTE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH---HcCC-ce--eeccccHHHHHHh------cCCC
Confidence            67899999975 355666777765  4689999999887765542   3453 22  2222222333333      3479


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      |+||--.....   .++.+.+.|+++|.++.-.
T Consensus       246 D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          246 DYVIDTVPVHH---ALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             EEEEECCCSCC---CSHHHHTTEEEEEEEEECS
T ss_pred             CEEEECCCChH---HHHHHHHHhccCCEEEEeC
Confidence            99985433221   2445678999999998644

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.26  E-value=0.28  Score=32.19  Aligned_cols=94  Identities=15%  Similarity=0.126  Sum_probs=54.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCc
Q 029836           20 AKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGT   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~   96 (187)
                      .++|+-+|+  |..+..++..+. .+.+|+.+|.+++..+.+++   ..    .+.++.+|..+  .+....     -..
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~---~~----~~~~~~~d~~~~~~l~~~~-----~~~   69 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA---EI----DALVINGDCTKIKTLEDAG-----IED   69 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HC----SSEEEESCTTSHHHHHHTT-----TTT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH---hc----CcEEEEcCCCCHHHHHHcC-----ccc
Confidence            357888886  666666655442 24689999999876654432   11    34556666533  222210     246


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      .|+|++-.........+....+.++++-+++
T Consensus        70 ~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~  100 (140)
T 1lss_A           70 ADMYIAVTGKEEVNLMSSLLAKSYGINKTIA  100 (140)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCEEEEeeCCchHHHHHHHHHHHcCCCEEEE
Confidence            8999987543333334444555677765544

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=95.09  E-value=0.045  Score=44.14  Aligned_cols=48  Identities=17%  Similarity=0.181  Sum_probs=39.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCchHHHHHHHHHHH
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP----DDGKILALDITKEHYEKGLPIIQK   66 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~----~~~~v~~vd~~~~~~~~a~~~~~~   66 (187)
                      .+-+|+|+|+|.|..+..++..+.    ...+++.||+|+...+.-++.+..
T Consensus       137 g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          137 GTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            467999999999999888876542    124899999999999888888875

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.06  E-value=0.053  Score=42.01  Aligned_cols=58  Identities=17%  Similarity=0.239  Sum_probs=43.4

Q ss_pred             HHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc---hHHHHHHHHHHHcC
Q 029836            8 AQFFSMLLKL--INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK---EHYEKGLPIIQKAG   68 (187)
Q Consensus         8 ~~~l~~l~~~--~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~---~~~~~a~~~~~~~~   68 (187)
                      .++++.++..  .+...|||--||+|..+......   +-+.+++|+++   ..++.++++++..+
T Consensus       229 ~~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          229 AAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            3455555543  35679999999999988877665   46899999999   99999999988765

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.03  E-value=0.038  Score=42.82  Aligned_cols=58  Identities=7%  Similarity=0.043  Sum_probs=45.2

Q ss_pred             HHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC
Q 029836            9 QFFSMLLKL--INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV   69 (187)
Q Consensus         9 ~~l~~l~~~--~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~   69 (187)
                      +++..++..  .+...|||--||+|..+......   +.+.+++|+++...+.++++++..+.
T Consensus       240 ~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~  299 (323)
T 1boo_A          240 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNNI  299 (323)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhccc
Confidence            455555543  35679999999999988776654   46899999999999999998876553

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=95.02  E-value=0.063  Score=44.02  Aligned_cols=77  Identities=5%  Similarity=-0.154  Sum_probs=53.1

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH-------------H
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ-------------L   87 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~-------------~   87 (187)
                      .+++|+-||.|..+.-+..+ + -..+.++|+++.+++..+.|+..   .+...++.+|..++...             +
T Consensus        89 ~~viDLFaG~GGlslG~~~a-G-~~~v~avE~d~~A~~ty~~N~~~---~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i  163 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESI-G-GQCVFTSEWNKHAVRTYKANHYC---DPATHHFNEDIRDITLSHQEGVSDEAAAEHI  163 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTT-T-EEEEEEECCCHHHHHHHHHHSCC---CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred             ceEEEecCCccHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHhccc---CCCcceeccchhhhhhccccccchhhHHhhh
Confidence            48999999999999888764 1 23589999999888777766521   23445677888765411             1


Q ss_pred             hhcccCCCceeEEEEcCC
Q 029836           88 IQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~  105 (187)
                      ...   ...+|+++...+
T Consensus       164 ~~~---~~~~Dvl~gGpP  178 (482)
T 3me5_A          164 RQH---IPEHDVLLAGFP  178 (482)
T ss_dssp             HHH---SCCCSEEEEECC
T ss_pred             hhc---CCCCCEEEecCC
Confidence            111   356899988765

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=94.98  E-value=0.088  Score=42.65  Aligned_cols=103  Identities=16%  Similarity=0.064  Sum_probs=63.2

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc--------------
Q 029836           17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA--------------   80 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~--------------   80 (187)
                      ..+.++||-+|+  +.|..+..+++..  +.++++++.+++.++.+++    .|...-+.....+.              
T Consensus       226 ~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~~~  299 (456)
T 3krt_A          226 MKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPKEW  299 (456)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchHHH
Confidence            345679999996  4677888888875  5789999988888777654    44421111111111              


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .++...+.+.. ....+|+||-...    ...++.+.+.|++||.++.-.
T Consensus       300 ~~~~~~i~~~t-~g~g~Dvvid~~G----~~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          300 KRFGKRIRELT-GGEDIDIVFEHPG----RETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHHHH-TSCCEEEEEECSC----HHHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHHHHh-CCCCCcEEEEcCC----chhHHHHHHHhhCCcEEEEEe
Confidence            01112221110 0247998885332    256788889999999998744

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.95  E-value=0.043  Score=43.50  Aligned_cols=95  Identities=13%  Similarity=0.010  Sum_probs=68.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC-ceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH-KIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ...+||.++-+.|..+++++..     .++.+.-+--.....+.|++.+++.+ ++++...-.     ..      ...|
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~-----~~------~~~~  101 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLDSTA-----DY------PQQP  101 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETTS-----CC------CSSC
T ss_pred             CCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccccc-----cc------ccCC
Confidence            4468999999999999988743     23555545556677889999998864 366643211     11      4679


Q ss_pred             eEEEEcCCC--cccHHHHHHHHhcccCCeEEEEe
Q 029836           98 DFVFVDADK--DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        98 D~v~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++..++  ......+..+...|++|+.+++.
T Consensus       102 ~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~  135 (375)
T 4dcm_A          102 GVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAG  135 (375)
T ss_dssp             SEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            999988763  34566778888999999988764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=94.95  E-value=0.13  Score=41.47  Aligned_cols=103  Identities=13%  Similarity=0.028  Sum_probs=63.1

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc--------------
Q 029836           17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA--------------   80 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~--------------   80 (187)
                      ..+.++||-+|+  |.|..+..+++..  +.++++++.+++.++.++    +.|...-+.....+.              
T Consensus       218 ~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~~~~~~~~~----~lGa~~~i~~~~~~~~~~~~~~~~~~~~~  291 (447)
T 4a0s_A          218 MKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSSAQKEAAVR----ALGCDLVINRAELGITDDIADDPRRVVET  291 (447)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCCCEEEHHHHTCCTTGGGCHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCCEEEecccccccccccccccccchh
Confidence            345689999996  4677777888875  578999999888777664    345422121111111              


Q ss_pred             -hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           81 -LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        81 -~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                       ..+...+....  ...+|+||-...    ...++.+.+.|++||.++.-..
T Consensus       292 ~~~~~~~v~~~~--g~g~Dvvid~~G----~~~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          292 GRKLAKLVVEKA--GREPDIVFEHTG----RVTFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHHHHHHHHH--SSCCSEEEECSC----HHHHHHHHHHSCTTCEEEESCC
T ss_pred             hhHHHHHHHHHh--CCCceEEEECCC----chHHHHHHHHHhcCCEEEEEec
Confidence             00111111110  347999985433    2467788899999999987543

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=94.94  E-value=0.054  Score=41.73  Aligned_cols=93  Identities=8%  Similarity=0.018  Sum_probs=57.8

Q ss_pred             EEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc-hHHHHHHhhcccCCCcee
Q 029836           22 NTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA-LPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        22 ~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~~~~~D   98 (187)
                      +||-+|+  +.|..+..+++..  +.+|++++.+++..+.+++    .|. +.+ +-..+. .+....+.     .+.+|
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa-~~~-i~~~~~~~~~~~~~~-----~~~~d  218 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRV----LGA-KEV-LAREDVMAERIRPLD-----KQRWA  218 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHH----TTC-SEE-EECC---------CC-----SCCEE
T ss_pred             eEEEecCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----cCC-cEE-EecCCcHHHHHHHhc-----CCccc
Confidence            8999996  5677888888876  4689999999888777654    453 211 111111 11122221     34799


Q ss_pred             EEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           99 FVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +||-....    ..++.+.+.++++|.++.-..
T Consensus       219 ~vid~~g~----~~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          219 AAVDPVGG----RTLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             EEEECSTT----TTHHHHHHTEEEEEEEEECSC
T ss_pred             EEEECCcH----HHHHHHHHhhccCCEEEEEee
Confidence            98754332    246778889999999987543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.70  E-value=0.17  Score=40.61  Aligned_cols=94  Identities=15%  Similarity=0.012  Sum_probs=60.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCc
Q 029836           20 AKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGT   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~   96 (187)
                      ..+|+-+|+  |..+..+++.+. .+..|+.+|.+++.++.+++    .    .+.++.||+.+  .+....     -..
T Consensus         4 ~~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~----g~~vi~GDat~~~~L~~ag-----i~~   68 (413)
T 3l9w_A            4 GMRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----F----GMKVFYGDATRMDLLESAG-----AAK   68 (413)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----T----TCCCEESCTTCHHHHHHTT-----TTT
T ss_pred             CCeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----C----CCeEEEcCCCCHHHHHhcC-----CCc
Confidence            457888887  555555554442 24789999999998877653    2    35577888765  444431     357


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|+|++-.+.......+-...+.+.|...+++
T Consensus        69 A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           69 AEVLINAIDDPQTNLQLTEMVKEHFPHLQIIA  100 (413)
T ss_dssp             CSEEEECCSSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             cCEEEECCCChHHHHHHHHHHHHhCCCCeEEE
Confidence            89998866543333444445566777766654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.68  E-value=0.2  Score=34.94  Aligned_cols=95  Identities=13%  Similarity=0.154  Sum_probs=53.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-C-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCC
Q 029836           20 AKNTMEIGVFTGYSLLATALAIP-D-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHG   95 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~-~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~   95 (187)
                      .++|+-+|+  |..+..+++.+. . +.+|+++|.+++..+.+++    .+    +.++.+|..+  .+...  .+  -.
T Consensus        39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~--~~--~~  104 (183)
T 3c85_A           39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERI--LD--TG  104 (183)
T ss_dssp             TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTB--CS--CC
T ss_pred             CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhc--cC--CC
Confidence            358999886  566666555442 2 4679999999987765442    22    4456666543  33321  00  24


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+|+|++-..........-...+.+.++..+++
T Consensus       105 ~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~  137 (183)
T 3c85_A          105 HVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAA  137 (183)
T ss_dssp             CCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEE
Confidence            689999854422222222233455566667765

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=94.64  E-value=0.25  Score=38.06  Aligned_cols=70  Identities=13%  Similarity=-0.071  Sum_probs=51.0

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v  100 (187)
                      .+|||+-||.|..+.-+..+ + -.-+.++|+++.+.+..+.|+.       .+++.+|..++-+.-      -...|++
T Consensus         1 mkvidLFsG~GG~~~G~~~a-G-~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~DI~~i~~~~------~~~~D~l   65 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDE------FPKCDGI   65 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHT-T-CEEEEEEECCTTTHHHHHHHCC-------SEEEESCGGGCCGGG------SCCCSEE
T ss_pred             CeEEEeCcCccHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHCC-------CCcccCChhhCCHhh------CCcccEE
Confidence            37999999999998887765 2 2457899999999887777652       256788887653322      3568998


Q ss_pred             EEcCC
Q 029836          101 FVDAD  105 (187)
Q Consensus       101 ~~d~~  105 (187)
                      +...+
T Consensus        66 ~ggpP   70 (331)
T 3ubt_Y           66 IGGPP   70 (331)
T ss_dssp             ECCCC
T ss_pred             EecCC
Confidence            87654

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.63  E-value=0.28  Score=36.45  Aligned_cols=79  Identities=15%  Similarity=0.079  Sum_probs=47.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEe
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP--DDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFRE   77 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~--~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~   77 (187)
                      +..+|+-+|+|  ..+..+++.+.  .-++++.+|.+.                   ...+.+.+.+...+-.-+++.+.
T Consensus        30 ~~~~VlVvG~G--g~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  107 (249)
T 1jw9_B           30 KDSRVLIVGLG--GLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN  107 (249)
T ss_dssp             HHCEEEEECCS--HHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             hCCeEEEEeeC--HHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence            45799999986  33333333221  136999999987                   66777777777654323455655


Q ss_pred             CCchH-HHHHHhhcccCCCceeEEEEcCC
Q 029836           78 GPALP-LLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        78 ~d~~~-~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      .+..+ .+..+      -..+|+|+...+
T Consensus       108 ~~~~~~~~~~~------~~~~DvVi~~~d  130 (249)
T 1jw9_B          108 ALLDDAELAAL------IAEHDLVLDCTD  130 (249)
T ss_dssp             SCCCHHHHHHH------HHTSSEEEECCS
T ss_pred             ccCCHhHHHHH------HhCCCEEEEeCC
Confidence            54432 22333      236899986554

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=94.59  E-value=0.07  Score=41.58  Aligned_cols=97  Identities=13%  Similarity=0.095  Sum_probs=54.7

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..+.++||-+|+  +.|..+..+++... ..+|++++ +++..+.++     .|...-+. ...+..+.+..+.     .
T Consensus       140 ~~~g~~VlV~Ga~G~vG~~a~qla~~~g-~~~V~~~~-~~~~~~~~~-----~ga~~~~~-~~~~~~~~~~~~~-----~  206 (349)
T 4a27_A          140 LREGMSVLVHSAGGGVGQAVAQLCSTVP-NVTVFGTA-STFKHEAIK-----DSVTHLFD-RNADYVQEVKRIS-----A  206 (349)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHTTST-TCEEEEEE-CGGGHHHHG-----GGSSEEEE-TTSCHHHHHHHHC-----T
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcC-CcEEEEeC-CHHHHHHHH-----cCCcEEEc-CCccHHHHHHHhc-----C
Confidence            345689999997  45667777887654 57899888 454444332     34321112 2222223333331     4


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +.+|+||-....    ..++.+.+.|+++|.++.-.
T Consensus       207 ~g~Dvv~d~~g~----~~~~~~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          207 EGVDIVLDCLCG----DNTGKGLSLLKPLGTYILYG  238 (349)
T ss_dssp             TCEEEEEEECC-----------CTTEEEEEEEEEEC
T ss_pred             CCceEEEECCCc----hhHHHHHHHhhcCCEEEEEC
Confidence            579999854321    12367889999999998654

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=94.55  E-value=0.16  Score=39.73  Aligned_cols=106  Identities=8%  Similarity=0.041  Sum_probs=58.4

Q ss_pred             cCC-CEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe---CCchHHHHHHhhcc
Q 029836           18 INA-KNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE---GPALPLLDQLIQDE   91 (187)
Q Consensus        18 ~~~-~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~---~d~~~~l~~~~~~~   91 (187)
                      .+. ++||-+|+  +.|..+..+++..  +.+++++..+++..+..++.+++.|...-+....   .+..+.+.++...+
T Consensus       165 ~~g~~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~  242 (364)
T 1gu7_A          165 TPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQS  242 (364)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCcHHHHHHHHHHHHC--CCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhcc
Confidence            355 89999985  5677788888875  4688888765554222223344556421111111   12222222221000


Q ss_pred             cCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           92 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                        ...+|+||-...   ..... .+.+.|+++|.++.-..
T Consensus       243 --~~g~Dvvid~~G---~~~~~-~~~~~l~~~G~~v~~g~  276 (364)
T 1gu7_A          243 --GGEAKLALNCVG---GKSST-GIARKLNNNGLMLTYGG  276 (364)
T ss_dssp             --TCCEEEEEESSC---HHHHH-HHHHTSCTTCEEEECCC
T ss_pred             --CCCceEEEECCC---chhHH-HHHHHhccCCEEEEecC
Confidence              347999985332   12233 66789999999987443

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.50  E-value=0.23  Score=39.03  Aligned_cols=100  Identities=12%  Similarity=0.117  Sum_probs=58.4

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .++++|+-+|+| .|.....++..++  .+|+.+|.+++..+.+++....     .+.....+..++...+       ..
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~  230 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAV-------AE  230 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHH-------HT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHH-------cC
Confidence            356899999984 3334445555553  5999999999888777665432     2333333332332222       35


Q ss_pred             eeEEEEcCCCcc--cHH-HHHHHHhcccCCeEEEEeCc
Q 029836           97 FDFVFVDADKDN--YVN-YHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        97 ~D~v~~d~~~~~--~~~-~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|+|+.-.....  .+. ..+...+.+++||+++--.+
T Consensus       231 ~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          231 ADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             CSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            899975433111  111 13456678999998875433

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=94.49  E-value=0.17  Score=39.57  Aligned_cols=94  Identities=14%  Similarity=0.116  Sum_probs=58.1

Q ss_pred             CCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc---hHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           20 AKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK---EHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        20 ~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~---~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      .++||-+|+| .|..+..+++..  +.+|++++.++   +..+.+++    .|. +.+   ..+  ++...+.. .  .+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~----~ga-~~v---~~~--~~~~~~~~-~--~~  245 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEE----TKT-NYY---NSS--NGYDKLKD-S--VG  245 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHH----HTC-EEE---ECT--TCSHHHHH-H--HC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHH----hCC-cee---chH--HHHHHHHH-h--CC
Confidence            7899999973 244555666654  46999999988   76665543    343 222   211  22222221 1  24


Q ss_pred             ceeEEEEcCCCcccHHHH-HHHHhcccCCeEEEEeCc
Q 029836           96 TFDFVFVDADKDNYVNYH-KRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~-~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|+||-.....   ..+ +.+.+.|+++|.++.-..
T Consensus       246 ~~d~vid~~g~~---~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          246 KFDVIIDATGAD---VNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             CEEEEEECCCCC---THHHHHHGGGEEEEEEEEECSC
T ss_pred             CCCEEEECCCCh---HHHHHHHHHHHhcCCEEEEEec
Confidence            799998654322   245 778899999999987543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.44  E-value=0.32  Score=32.89  Aligned_cols=97  Identities=8%  Similarity=0.006  Sum_probs=58.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc-hHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCC
Q 029836           20 AKNTMEIGVFTGYSLLATALAIP-DDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHG   95 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~-~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~   95 (187)
                      .++++-+|+  |..+..+++.+. .+..|+.+|.++ +..+...+...     ..+.++.+|+.+  .+....     -+
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a~-----i~   70 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAG-----ID   70 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHT-----TT
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-----CCCeEEEcCCCCHHHHHHcC-----hh
Confidence            457888875  777777666553 246899999974 44444333221     357788898754  333321     35


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..|.|++-..............+.+.+...++.
T Consensus        71 ~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           71 RCRAILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             TCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             hCCEEEEecCChHHHHHHHHHHHHHCCCCEEEE
Confidence            789999865433334444445566666666654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=94.39  E-value=0.16  Score=40.13  Aligned_cols=99  Identities=18%  Similarity=0.167  Sum_probs=56.3

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .++++|+-+|+| .|......+..+  +.+|+++|.+++..+.+++.+   +.  .+.....+..+ +....      ..
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~-l~~~l------~~  231 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYE-LEGAV------KR  231 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHH-HHHHH------HH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHH-HHHHH------cC
Confidence            457899999984 233334445554  469999999998776665433   32  22222222222 22321      35


Q ss_pred             eeEEEEcCC-Cc--ccHHHHHHHHhcccCCeEEEEeC
Q 029836           97 FDFVFVDAD-KD--NYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        97 ~D~v~~d~~-~~--~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .|+|+.-.. +.  ...-+.+...+.|++||+++--.
T Consensus       232 aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          232 ADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            799987432 11  11112355677899999987543

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=94.25  E-value=0.047  Score=41.97  Aligned_cols=92  Identities=9%  Similarity=0.025  Sum_probs=60.3

Q ss_pred             EEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           22 NTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        22 ~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      +||-+|+  +.|..+..+++..  +.+|++++.+++..+.+++    .|. +. .+-..+. +....+     ..+.+|+
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa-~~-vi~~~~~-~~~~~~-----~~~~~d~  214 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL--GYQVAAVSGRESTHGYLKS----LGA-NR-ILSRDEF-AESRPL-----EKQLWAG  214 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTC-SE-EEEGGGS-SCCCSS-----CCCCEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCC-CE-EEecCCH-HHHHhh-----cCCCccE
Confidence            4999986  5788888899876  4699999999998887765    343 21 1111111 111111     1357998


Q ss_pred             EEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836          100 VFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus       100 v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ||-...    ...++.+.+.|+++|.++.-..
T Consensus       215 v~d~~g----~~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          215 AIDTVG----DKVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             EEESSC----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEECCC----cHHHHHHHHHHhcCCEEEEEec
Confidence            774322    2378888999999999987543

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=94.23  E-value=0.13  Score=40.91  Aligned_cols=46  Identities=15%  Similarity=0.140  Sum_probs=36.1

Q ss_pred             CEEEEEcccccHHHHHHHhhCC------CCCEEEEEeCCchHHHHHHHHHHH
Q 029836           21 KNTMEIGVFTGYSLLATALAIP------DDGKILALDITKEHYEKGLPIIQK   66 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~------~~~~v~~vd~~~~~~~~a~~~~~~   66 (187)
                      -.|+|+|+|.|..+..+++.+.      ...+++.||+|+...+.-++.+..
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  133 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  133 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence            3799999999999998876542      135899999999888766666544

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=94.19  E-value=0.42  Score=32.39  Aligned_cols=97  Identities=12%  Similarity=-0.007  Sum_probs=54.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYH   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~   94 (187)
                      ...++|+-+|+  |.++..++..+. .+.+|+++|.+++.++.+++   .    ....++.++..+  .+...   .  -
T Consensus        17 ~~~~~v~IiG~--G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~----~g~~~~~~d~~~~~~l~~~---~--~   82 (155)
T 2g1u_A           17 QKSKYIVIFGC--GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---E----FSGFTVVGDAAEFETLKEC---G--M   82 (155)
T ss_dssp             CCCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---T----CCSEEEESCTTSHHHHHTT---T--G
T ss_pred             cCCCcEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---c----CCCcEEEecCCCHHHHHHc---C--c
Confidence            45679999987  555555554432 24689999999877654321   1    234556666533  22221   0  2


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..+|+|++-............+.+.+.+...++.
T Consensus        83 ~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~  116 (155)
T 2g1u_A           83 EKADMVFAFTNDDSTNFFISMNARYMFNVENVIA  116 (155)
T ss_dssp             GGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred             ccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEE
Confidence            4689999865433333333334444455555554

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.18  E-value=0.87  Score=33.03  Aligned_cols=94  Identities=13%  Similarity=-0.015  Sum_probs=59.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGT   96 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~   96 (187)
                      ..++++-+|+  |..+..+++.+...+.|+.+|.+++.++.++         ..+.++.+|+.+  .+....     -..
T Consensus         8 ~~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~---------~~~~~i~gd~~~~~~l~~a~-----i~~   71 (234)
T 2aef_A            8 KSRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR---------SGANFVHGDPTRVSDLEKAN-----VRG   71 (234)
T ss_dssp             --CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH---------TTCEEEESCTTCHHHHHHTT-----CTT
T ss_pred             CCCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh---------cCCeEEEcCCCCHHHHHhcC-----cch
Confidence            3468999887  7888888888753323999999988765443         146788888864  333321     357


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|.|++-..........-...+.+.++..+++
T Consensus        72 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia  103 (234)
T 2aef_A           72 ARAVIVDLESDSETIHCILGIRKIDESVRIIA  103 (234)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             hcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEE
Confidence            89998865433333334444566777756654

>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}

Probab=94.10  E-value=0.48  Score=32.13  Aligned_cols=96  Identities=14%  Similarity=-0.029  Sum_probs=51.5

Q ss_pred             ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC-
Q 029836           28 VFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK-  106 (187)
Q Consensus        28 ~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~-  106 (187)
                      .|.+.+............+|..+|-++......+..+...+. ..+.....+..+.+..+.     ...+|+|++|... 
T Consensus         9 ~~~~~~~~~~~~M~~~~~~ILivdd~~~~~~~l~~~L~~~~~-~~~v~~~~~~~~al~~l~-----~~~~dlvilD~~l~   82 (164)
T 3t8y_A            9 HHSSGLVPRGSHMTDRVIRVLVVDDSAFMRMVLKDIIDSQPD-MKVVGFAKDGLEAVEKAI-----ELKPDVITMDIEMP   82 (164)
T ss_dssp             ---------------CCEEEEEECSCHHHHHHHHHHHHTSTT-EEEEEEESSHHHHHHHHH-----HHCCSEEEECSSCS
T ss_pred             cccCCcccCccccccCccEEEEEcCCHHHHHHHHHHHhcCCC-eEEEEecCCHHHHHHHhc-----cCCCCEEEEeCCCC
Confidence            455666666555433346899999999999988888887542 122223556666665553     3469999999762 


Q ss_pred             -cccHHHHHHHHhcccCCeEEEEeC
Q 029836          107 -DNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus       107 -~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                       .+-.++++.+...- +--++++..
T Consensus        83 ~~~g~~l~~~lr~~~-~~~ii~~s~  106 (164)
T 3t8y_A           83 NLNGIEALKLIMKKA-PTRVIMVSS  106 (164)
T ss_dssp             SSCHHHHHHHHHHHS-CCEEEEEES
T ss_pred             CCCHHHHHHHHHhcC-CceEEEEec
Confidence             23455666655433 344555544

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=94.00  E-value=0.35  Score=37.52  Aligned_cols=97  Identities=6%  Similarity=-0.148  Sum_probs=56.9

Q ss_pred             CEEEEEc-c-cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           21 KNTMEIG-V-FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        21 ~~vLeiG-~-g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      +++|-.| + +.|..+..+++..  +.+|++++.+++..+.+++    .|. +  .++..+..++...+.+.. ....+|
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga-~--~~~~~~~~~~~~~v~~~~-~~~g~D  235 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEE--GFRPIVTVRRDEQIALLKD----IGA-A--HVLNEKAPDFEATLREVM-KAEQPR  235 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESCGGGHHHHHH----HTC-S--EEEETTSTTHHHHHHHHH-HHHCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC-C--EEEECCcHHHHHHHHHHh-cCCCCc
Confidence            5666543 2 3455666677765  4699999999988877764    343 1  222222222222221110 013699


Q ss_pred             EEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           99 FVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +||-...    ...+..+.+.|+++|.++.-..
T Consensus       236 ~vid~~g----~~~~~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          236 IFLDAVT----GPLASAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             EEEESSC----HHHHHHHHHHSCTTCEEEECCC
T ss_pred             EEEECCC----ChhHHHHHhhhcCCCEEEEEec
Confidence            9885432    2334778899999999987543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.98  E-value=0.37  Score=34.68  Aligned_cols=93  Identities=14%  Similarity=0.040  Sum_probs=56.9

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCcee
Q 029836           22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGTFD   98 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~D   98 (187)
                      +|+-+|+  |..+..+++.+. .+..|+.+|.+++.++...+   .    ..+.++.+|+.+  .+....     -...|
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~---~----~~~~~i~gd~~~~~~l~~a~-----i~~ad   67 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAK---K----LKATIIHGDGSHKEILRDAE-----VSKND   67 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH---H----SSSEEEESCTTSHHHHHHHT-----CCTTC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH---H----cCCeEEEcCCCCHHHHHhcC-----cccCC
Confidence            5777775  777777766552 24689999999987765432   1    145678888765  343321     35789


Q ss_pred             EEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           99 FVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +|++-..............+.+.+...++.
T Consensus        68 ~vi~~~~~d~~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           68 VVVILTPRDEVNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             EEEEecCCcHHHHHHHHHHHHHcCCCeEEE
Confidence            998866544333444444454555555554

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=93.95  E-value=0.1  Score=39.99  Aligned_cols=87  Identities=11%  Similarity=0.052  Sum_probs=56.0

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .+.++||-+|+| .|..+..+++..  +.+|++++ +++..+.+++    .|.   -.++. |    ...+      .+.
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~-~~~~~~~~~~----lGa---~~v~~-d----~~~v------~~g  199 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNA--GYVVDLVS-ASLSQALAAK----RGV---RHLYR-E----PSQV------TQK  199 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHH--TCEEEEEC-SSCCHHHHHH----HTE---EEEES-S----GGGC------CSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEE-ChhhHHHHHH----cCC---CEEEc-C----HHHh------CCC
Confidence            456899999985 467778888876  46999999 8888877755    343   12222 3    1222      357


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+||-....    ..+..+.+.|+++|.++.-
T Consensus       200 ~Dvv~d~~g~----~~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          200 YFAIFDAVNS----QNAAALVPSLKANGHIICI  228 (315)
T ss_dssp             EEEEECC-----------TTGGGEEEEEEEEEE
T ss_pred             ccEEEECCCc----hhHHHHHHHhcCCCEEEEE
Confidence            9998843221    1235678899999998864

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=93.76  E-value=0.34  Score=38.00  Aligned_cols=97  Identities=16%  Similarity=0.092  Sum_probs=59.1

Q ss_pred             hcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIG--VFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG--~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..+.++||-+|  .+.|..+..+++..  +.+|++++ +++..+.+    ++.|..   .++..+..++...+..    .
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~--Ga~Vi~~~-~~~~~~~~----~~lGa~---~v~~~~~~~~~~~~~~----~  246 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAW--DAHVTAVC-SQDASELV----RKLGAD---DVIDYKSGSVEEQLKS----L  246 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHH----HHTTCS---EEEETTSSCHHHHHHT----S
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEe-ChHHHHHH----HHcCCC---EEEECCchHHHHHHhh----c
Confidence            34567999999  35677788888875  46899988 66655554    345542   1222222223333321    2


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+|+||-.....  ...+..+.+.|++||.++.-
T Consensus       247 ~g~D~vid~~g~~--~~~~~~~~~~l~~~G~iv~~  279 (375)
T 2vn8_A          247 KPFDFILDNVGGS--TETWAPDFLKKWSGATYVTL  279 (375)
T ss_dssp             CCBSEEEESSCTT--HHHHGGGGBCSSSCCEEEES
T ss_pred             CCCCEEEECCCCh--hhhhHHHHHhhcCCcEEEEe
Confidence            4799988543211  13456777899999999864

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.62  E-value=0.31  Score=38.64  Aligned_cols=102  Identities=23%  Similarity=0.219  Sum_probs=60.6

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe---------CCc--------
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE---------GPA--------   80 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~---------~d~--------   80 (187)
                      ++.+|+-||+| .|..+..++..+  +.+|+++|.++...+.+++    .|.    ++..         +..        
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~----lGa----~~~~l~~~~~~~~gya~~~~~~~~  252 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPEVAEQVRS----VGA----QWLDLGIDAAGEGGYARELSEAER  252 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGGGHHHHHH----TTC----EECCCC-------------CHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccchhhhhHHHH
Confidence            67899999997 445555566665  4689999999988776654    222    1211         111        


Q ss_pred             ---hHHHHHHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCcc
Q 029836           81 ---LPLLDQLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGGS  136 (187)
Q Consensus        81 ---~~~l~~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~  136 (187)
                         .+.+.+.      -...|+|+.-..   .....-+-+...+.+|||++|+=-.+..+|.
T Consensus       253 ~~~~~~l~e~------l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~  308 (381)
T 3p2y_A          253 AQQQQALEDA------ITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGN  308 (381)
T ss_dssp             HHHHHHHHHH------HTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCS
T ss_pred             hhhHHHHHHH------HhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCc
Confidence               1122222      246899986421   1111112357778899999887655544444

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.59  E-value=0.31  Score=38.31  Aligned_cols=98  Identities=13%  Similarity=0.154  Sum_probs=56.0

Q ss_pred             cCCCEEEEEcccccHHHHH---HHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           18 INAKNTMEIGVFTGYSLLA---TALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~---l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      .++++|+-+|+  |..+..   .+..+  +.+|+++|.+++..+.+++.+   +.  .+.....+..+ +....      
T Consensus       164 l~~~~V~ViGa--G~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~-l~~~~------  227 (369)
T 2eez_A          164 VAPASVVILGG--GTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEAN-IKKSV------  227 (369)
T ss_dssp             BCCCEEEEECC--SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHH-HHHHH------
T ss_pred             CCCCEEEEECC--CHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHH-HHHHH------
Confidence            45789999998  444444   44443  469999999988776554322   32  23333333322 33321      


Q ss_pred             CceeEEEEcCCCcc--cHH-HHHHHHhcccCCeEEEEeCc
Q 029836           95 GTFDFVFVDADKDN--YVN-YHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        95 ~~~D~v~~d~~~~~--~~~-~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ...|+|+.......  ... ..+...+.|++||+++.-..
T Consensus       228 ~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~  267 (369)
T 2eez_A          228 QHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAV  267 (369)
T ss_dssp             HHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC-
T ss_pred             hCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEec
Confidence            35799986543211  111 24566788999998875443

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=93.50  E-value=1.1  Score=34.55  Aligned_cols=93  Identities=14%  Similarity=0.010  Sum_probs=59.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCce
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGTF   97 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~   97 (187)
                      .++++-+|+  |..+..+++.+...+.++.+|.+++.++ +++        ..+.+++||+.+  .+.+..     -+..
T Consensus       115 ~~~viI~G~--G~~g~~l~~~L~~~g~v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~~~L~~a~-----i~~a  178 (336)
T 1lnq_A          115 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKK-VLR--------SGANFVHGDPTRVSDLEKAN-----VRGA  178 (336)
T ss_dssp             -CEEEEESC--CHHHHHHHTTGGGSCEEEEESCGGGHHH-HHH--------TTCEEEESCTTSHHHHHHTC-----STTE
T ss_pred             cCCEEEECC--cHHHHHHHHHHHhCCcEEEEeCChhhhh-HHh--------CCcEEEEeCCCCHHHHHhcC-----hhhc
Confidence            458998886  7888888877743333999999998876 543        357889999865  333321     3578


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |.+++-.......-..-...+.+.|...++.
T Consensus       179 ~~vi~~~~~d~~n~~~~~~ar~~~~~~~iia  209 (336)
T 1lnq_A          179 RAVIVDLESDSETIHCILGIRKIDESVRIIA  209 (336)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             cEEEEcCCccHHHHHHHHHHHHHCCCCeEEE
Confidence            9998865433323333344466777755554

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.46  E-value=0.62  Score=37.86  Aligned_cols=108  Identities=16%  Similarity=0.062  Sum_probs=69.6

Q ss_pred             HHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--H
Q 029836            7 EAQFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--L   83 (187)
Q Consensus         7 ~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~   83 (187)
                      ..++++.+-.. .+.++|+-+|.  |..+..+++.+....++..+|.+++.++.+.+.+      ++..+++||+.+  +
T Consensus       221 i~~~~~~~g~~~~~~~~v~I~Gg--G~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l------~~~~Vi~GD~td~~~  292 (461)
T 4g65_A          221 IRSVMSELQRLEKPYRRIMIVGG--GNIGASLAKRLEQTYSVKLIERNLQRAEKLSEEL------ENTIVFCGDAADQEL  292 (461)
T ss_dssp             HHHHHHHTTGGGSCCCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHC------TTSEEEESCTTCHHH
T ss_pred             HHHHHHhhccccccccEEEEEcc--hHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHC------CCceEEeccccchhh
Confidence            34455544332 24578988876  6677888888876789999999999887766654      578899999976  3


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |.+.   +  -+..|+++.--......-+...+.+.+...-++.
T Consensus       293 L~ee---~--i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa  331 (461)
T 4g65_A          293 LTEE---N--IDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMV  331 (461)
T ss_dssp             HHHT---T--GGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             Hhhc---C--chhhcEEEEcccCcHHHHHHHHHHHHcCCccccc
Confidence            4432   1  3578999976543333333334444454444443

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.37  E-value=0.38  Score=38.48  Aligned_cols=103  Identities=20%  Similarity=0.206  Sum_probs=61.3

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-------------Cc----
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-------------PA----   80 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-------------d~----   80 (187)
                      ++.+|+-+|+| .|.....++..+  +.+|+++|.++..++.+++    .|.    ++...             .+    
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~----~G~----~~~~~~~~~~~d~~~~~~ya~e~s  258 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRL--GAVVSATDVRPAAKEQVAS----LGA----KFIAVEDEEFKAAETAGGYAKEMS  258 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSTTHHHHHHH----TTC----EECCCCC-----------------
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH----cCC----ceeecccccccccccccchhhhcc
Confidence            57899999997 455666667766  4699999999988776654    222    11110             00    


Q ss_pred             -------hHHHHHHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCccc
Q 029836           81 -------LPLLDQLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGGSV  137 (187)
Q Consensus        81 -------~~~l~~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~  137 (187)
                             ...+.+.      -...|+|+.-..   .....-+-+.+.+.+|||++|+=-.+..+|..
T Consensus       259 ~~~~~~~~~~l~e~------l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~  319 (405)
T 4dio_A          259 GEYQVKQAALVAEH------IAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNI  319 (405)
T ss_dssp             CHHHHHHHHHHHHH------HHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSB
T ss_pred             hhhhhhhHhHHHHH------hcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCc
Confidence                   0122222      136799986421   11111123577889999999875554454543

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=93.31  E-value=0.81  Score=28.84  Aligned_cols=80  Identities=16%  Similarity=-0.022  Sum_probs=48.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CC-CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCC
Q 029836           20 AKNTMEIGVFTGYSLLATALAIP-DD-GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHG   95 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~-~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~   95 (187)
                      .++|+-+|+  |..+..++..+. .+ .+|+++|.+++..+.+.    .    ..+.+...|..+  .+...      -.
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~------~~   68 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKA------LG   68 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHH------TT
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHH------Hc
Confidence            458999998  666666554432 23 68999999987665443    1    345666666643  23333      24


Q ss_pred             ceeEEEEcCCCcccHHHHHH
Q 029836           96 TFDFVFVDADKDNYVNYHKR  115 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~  115 (187)
                      .+|+|+.-.+........+.
T Consensus        69 ~~d~vi~~~~~~~~~~~~~~   88 (118)
T 3ic5_A           69 GFDAVISAAPFFLTPIIAKA   88 (118)
T ss_dssp             TCSEEEECSCGGGHHHHHHH
T ss_pred             CCCEEEECCCchhhHHHHHH
Confidence            68999976654333333333

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=93.27  E-value=0.43  Score=37.19  Aligned_cols=98  Identities=11%  Similarity=0.046  Sum_probs=58.1

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC--chHHHHHHhhccc
Q 029836           16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP--ALPLLDQLIQDEK   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d--~~~~l~~~~~~~~   92 (187)
                      ...+.++||-+|+| .|..+..+++..+ +.+|++++.+++..+.+++    .|. +.  ++.-.  ..+.+..+..   
T Consensus       183 ~~~~g~~VlV~GaG~vG~~avqlak~~~-Ga~Vi~~~~~~~~~~~~~~----lGa-~~--vi~~~~~~~~~v~~~~~---  251 (359)
T 1h2b_A          183 TLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGA-DH--VVDARRDPVKQVMELTR---  251 (359)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTC-SE--EEETTSCHHHHHHHHTT---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCC-CE--EEeccchHHHHHHHHhC---
Confidence            34466899999974 3445666777652 3689999999988776653    453 22  22221  1122333310   


Q ss_pred             CCCceeEEEEcCCCcccHH--HHHHHHhcccCCeEEEEeC
Q 029836           93 YHGTFDFVFVDADKDNYVN--YHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~~~~~--~~~~~~~~L~~gG~lv~~~  130 (187)
                       ...+|+||--..   ...  .++.+.+.  ++|.++.-.
T Consensus       252 -g~g~Dvvid~~G---~~~~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          252 -GRGVNVAMDFVG---SQATVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             -TCCEEEEEESSC---CHHHHHHGGGGEE--EEEEEEECC
T ss_pred             -CCCCcEEEECCC---CchHHHHHHHhhc--CCCEEEEEe
Confidence             227999985332   223  56666666  899888644

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=93.25  E-value=0.52  Score=36.88  Aligned_cols=81  Identities=17%  Similarity=0.054  Sum_probs=50.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGT   96 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~   96 (187)
                      +.++|+-+||  |..+..+++.+.....|+..|.+.+.++.+++         .+..+..|+.+  .+..+.      ..
T Consensus        15 ~~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~---------~~~~~~~d~~d~~~l~~~~------~~   77 (365)
T 3abi_A           15 RHMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE---------FATPLKVDASNFDKLVEVM------KE   77 (365)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT---------TSEEEECCTTCHHHHHHHH------TT
T ss_pred             CccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc---------cCCcEEEecCCHHHHHHHH------hC
Confidence            3468999998  77777777777666889999999877665432         34444555533  334432      36


Q ss_pred             eeEEEEcCCCcccHHHHHHH
Q 029836           97 FDFVFVDADKDNYVNYHKRL  116 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~  116 (187)
                      .|+|+.-.+........+.|
T Consensus        78 ~DvVi~~~p~~~~~~v~~~~   97 (365)
T 3abi_A           78 FELVIGALPGFLGFKSIKAA   97 (365)
T ss_dssp             CSEEEECCCGGGHHHHHHHH
T ss_pred             CCEEEEecCCcccchHHHHH
Confidence            79988765433333444443

>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}

Probab=93.25  E-value=0.96  Score=29.05  Aligned_cols=79  Identities=14%  Similarity=0.011  Sum_probs=51.0

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHhcccC
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIELVKV  122 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~~L~~  122 (187)
                      .++..+|-++...+..++.+...|.  .+.....+..+.+..+.     ...+|+|++|...  .+-.++++.+...-..
T Consensus         2 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~-----~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~   74 (134)
T 3f6c_A            2 LNAIIIDDHPLAIAAIRNLLIKNDI--EILAELTEGGSAVQRVE-----TLKPDIVIIDVDIPGVNGIQVLETLRKRQYS   74 (134)
T ss_dssp             EEEEEECCCHHHHHHHHHHHHHTTE--EEEEEESSSTTHHHHHH-----HHCCSEEEEETTCSSSCHHHHHHHHHHTTCC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhhCCc--EEEEEcCCHHHHHHHHH-----hcCCCEEEEecCCCCCChHHHHHHHHhcCCC
Confidence            3688899999999999999988753  33323455555555443     3479999999762  3345667766654333


Q ss_pred             CeEEEEeC
Q 029836          123 GGVIGYDN  130 (187)
Q Consensus       123 gG~lv~~~  130 (187)
                      --++++.+
T Consensus        75 ~~ii~~s~   82 (134)
T 3f6c_A           75 GIIIIVSA   82 (134)
T ss_dssp             SEEEEEEC
T ss_pred             CeEEEEeC
Confidence            33555543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=93.16  E-value=0.36  Score=37.13  Aligned_cols=88  Identities=18%  Similarity=0.203  Sum_probs=55.8

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCC--EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH-HHHHHhhcccCCCc
Q 029836           21 KNTMEIGVFTGYSLLATALAIP-DDG--KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP-LLDQLIQDEKYHGT   96 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~-~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~l~~~~~~~~~~~~   96 (187)
                      ++|.-||+|  ..+..++..+. .+.  +|+++|.+++.++.+++    .|...  . ...+..+ .+          ..
T Consensus        34 ~kI~IIG~G--~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~--~-~~~~~~~~~~----------~~   94 (314)
T 3ggo_A           34 QNVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID--E-GTTSIAKVED----------FS   94 (314)
T ss_dssp             SEEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS--E-EESCTTGGGG----------GC
T ss_pred             CEEEEEeeC--HHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc--h-hcCCHHHHhh----------cc
Confidence            689999875  44444433321 123  89999999987766543    34311  1 1233322 21          35


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      .|+|++-.+.......++.+.+.+++|.+++
T Consensus        95 aDvVilavp~~~~~~vl~~l~~~l~~~~iv~  125 (314)
T 3ggo_A           95 PDFVMLSSPVRTFREIAKKLSYILSEDATVT  125 (314)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred             CCEEEEeCCHHHHHHHHHHHhhccCCCcEEE
Confidence            7999987776667788888888899988664

>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}

Probab=93.14  E-value=1.2  Score=29.80  Aligned_cols=81  Identities=14%  Similarity=0.050  Sum_probs=52.9

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHhcccC
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIELVKV  122 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~~L~~  122 (187)
                      .+|..+|-++...+..++.++..|.  ++.....+..+.+..+...   ...+|+|++|...  .+-.++++.+...-..
T Consensus        37 ~~Ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~l~~~---~~~~dliilD~~l~~~~g~~~~~~lr~~~~~  111 (157)
T 3hzh_A           37 FNVLIVDDSVFTVKQLTQIFTSEGF--NIIDTAADGEEAVIKYKNH---YPNIDIVTLXITMPKMDGITCLSNIMEFDKN  111 (157)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHH---GGGCCEEEECSSCSSSCHHHHHHHHHHHCTT
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHhc---CCCCCEEEEeccCCCccHHHHHHHHHhhCCC
Confidence            3799999999999999999988764  3332456666666655321   1278999999762  3345666666654433


Q ss_pred             CeEEEEeC
Q 029836          123 GGVIGYDN  130 (187)
Q Consensus       123 gG~lv~~~  130 (187)
                      --++++.+
T Consensus       112 ~~ii~ls~  119 (157)
T 3hzh_A          112 ARVIMISA  119 (157)
T ss_dssp             CCEEEEES
T ss_pred             CcEEEEec
Confidence            34555543

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.08  E-value=1.4  Score=32.83  Aligned_cols=84  Identities=12%  Similarity=0.190  Sum_probs=56.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~   93 (187)
                      .+.|.+|-.|.+.|. +..+++.+. .+++|+.+|.+++.++.+.+.++..+  .++.++++|..+.  ...+.+.. ..
T Consensus         5 L~gKvalVTGas~GI-G~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGI-GRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFET   81 (254)
T ss_dssp             GTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            467889999976654 444444432 36899999999999988888888776  4788888886432  22221111 01


Q ss_pred             CCceeEEEEcC
Q 029836           94 HGTFDFVFVDA  104 (187)
Q Consensus        94 ~~~~D~v~~d~  104 (187)
                      .++.|+++..+
T Consensus        82 ~G~iDiLVNNA   92 (254)
T 4fn4_A           82 YSRIDVLCNNA   92 (254)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            46899998764

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.06  E-value=2  Score=31.71  Aligned_cols=80  Identities=10%  Similarity=0.110  Sum_probs=53.1

Q ss_pred             cCCCEEEEEccc----ccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH------HHH
Q 029836           18 INAKNTMEIGVF----TGY-SLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL------LDQ   86 (187)
Q Consensus        18 ~~~~~vLeiG~g----~G~-~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~   86 (187)
                      .+.+++|-.|++    .|. .+..|++.   +++|+.++.+++..+.+.+.+++.+- .++.+++.|..+.      +..
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~---Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~   79 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQL---GAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQ   79 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHH
Confidence            467899999953    343 23334433   68999999999988888888877654 4678888876431      222


Q ss_pred             HhhcccCCCceeEEEEcC
Q 029836           87 LIQDEKYHGTFDFVFVDA  104 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~  104 (187)
                      ..+.   .+..|+++...
T Consensus        80 ~~~~---~G~iD~lvnnA   94 (256)
T 4fs3_A           80 IGKD---VGNIDGVYHSI   94 (256)
T ss_dssp             HHHH---HCCCSEEEECC
T ss_pred             HHHH---hCCCCEEEecc
Confidence            2211   46899998764

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=93.06  E-value=0.93  Score=32.80  Aligned_cols=94  Identities=16%  Similarity=0.130  Sum_probs=55.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-C-CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCC
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPD-D-GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHG   95 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~-~-~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~   95 (187)
                      .++||-+| |+|.++..+++.+.. + .+|++++.+++....        -...+++++.+|..+  .+....      .
T Consensus        23 mk~vlVtG-atG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~--------~~~~~~~~~~~Dl~d~~~~~~~~------~   87 (236)
T 3qvo_A           23 MKNVLILG-AGGQIARHVINQLADKQTIKQTLFARQPAKIHK--------PYPTNSQIIMGDVLNHAALKQAM------Q   87 (236)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS--------SCCTTEEEEECCTTCHHHHHHHH------T
T ss_pred             ccEEEEEe-CCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc--------cccCCcEEEEecCCCHHHHHHHh------c
Confidence            35678777 667778887776643 3 589999988764321        112478899998765  233332      3


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccC--CeEEEE
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKV--GGVIGY  128 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~--gG~lv~  128 (187)
                      ..|.||............+.+.+.++.  .+.||+
T Consensus        88 ~~D~vv~~a~~~~~~~~~~~~~~~~~~~~~~~iV~  122 (236)
T 3qvo_A           88 GQDIVYANLTGEDLDIQANSVIAAMKACDVKRLIF  122 (236)
T ss_dssp             TCSEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEcCCCCchhHHHHHHHHHHHHcCCCEEEE
Confidence            579999766544333333344443332  244554

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=92.85  E-value=0.46  Score=37.25  Aligned_cols=95  Identities=12%  Similarity=0.040  Sum_probs=58.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHH------HcCCCCceEEEeCCchHHHHHHhhccc
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQ------KAGVAHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~------~~~~~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      ..+|.-||+  |.++..++..+.. +..|+..+.+++.++..++.-.      ...++.++++. .|..+.+        
T Consensus        29 ~mkI~VIGa--G~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~d~~ea~--------   97 (356)
T 3k96_A           29 KHPIAILGA--GSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-CDLKASL--------   97 (356)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-SCHHHHH--------
T ss_pred             CCeEEEECc--cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-CCHHHHH--------
Confidence            457889988  5555555544432 3579999999887765544211      11112233332 2332221        


Q ss_pred             CCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                        ...|+|++--+.....+.++.+.+.++++.+++
T Consensus        98 --~~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivv  130 (356)
T 3k96_A           98 --EGVTDILIVVPSFAFHEVITRMKPLIDAKTRIA  130 (356)
T ss_dssp             --TTCCEEEECCCHHHHHHHHHHHGGGCCTTCEEE
T ss_pred             --hcCCEEEECCCHHHHHHHHHHHHHhcCCCCEEE
Confidence              356999987766667778888888999888765

>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}

Probab=92.77  E-value=1.2  Score=29.39  Aligned_cols=81  Identities=9%  Similarity=-0.042  Sum_probs=53.2

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK  121 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~  121 (187)
                      ..+|..+|-++...+..+..+...+. ..+.....+..+.+..+.     ...+|+|++|..  ..+-.++++.+.+.-.
T Consensus        15 ~~~iLivdd~~~~~~~l~~~L~~~~~-~~~v~~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~~~~   88 (152)
T 3eul_A           15 KVRVVVGDDHPLFREGVVRALSLSGS-VNVVGEADDGAAALELIK-----AHLPDVALLDYRMPGMDGAQVAAAVRSYEL   88 (152)
T ss_dssp             CEEEEEECSSHHHHHHHHHHHHHHSS-EEEEEEESSHHHHHHHHH-----HHCCSEEEEETTCSSSCHHHHHHHHHHTTC
T ss_pred             eEEEEEEcCCHHHHHHHHHHHhhCCC-eEEEEEeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence            57899999999999999999988753 122224556666665553     347999999976  2344566776665433


Q ss_pred             CCeEEEEeC
Q 029836          122 VGGVIGYDN  130 (187)
Q Consensus       122 ~gG~lv~~~  130 (187)
                      .--++++.+
T Consensus        89 ~~~ii~~s~   97 (152)
T 3eul_A           89 PTRVLLISA   97 (152)
T ss_dssp             SCEEEEEES
T ss_pred             CCeEEEEEc
Confidence            334555544

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=92.73  E-value=0.65  Score=38.13  Aligned_cols=87  Identities=15%  Similarity=0.192  Sum_probs=52.4

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..+++|+-+|+| .|......++.+  +.+|+++|.++...+.+++    .|.    ++  .+..+.+          ..
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~----~Ga----~~--~~l~e~l----------~~  329 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMM----EGF----DV--VTVEEAI----------GD  329 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTC----EE--CCHHHHG----------GG
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC----EE--ecHHHHH----------hC
Confidence            467899999985 333444445554  4699999999987665543    333    22  2332221          35


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|+|+.........  -....+.||+||+++-
T Consensus       330 aDvVi~atgt~~~i--~~~~l~~mk~ggilvn  359 (494)
T 3ce6_A          330 ADIVVTATGNKDII--MLEHIKAMKDHAILGN  359 (494)
T ss_dssp             CSEEEECSSSSCSB--CHHHHHHSCTTCEEEE
T ss_pred             CCEEEECCCCHHHH--HHHHHHhcCCCcEEEE
Confidence            79998764322211  1245567899998874

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=92.69  E-value=0.41  Score=37.86  Aligned_cols=42  Identities=21%  Similarity=0.246  Sum_probs=30.4

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHH
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLP   62 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~   62 (187)
                      ++++|+-+|+| .|..+..+++.++  .+|+.+|.++...+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            57899999986 3444555666654  689999999887766543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.59  E-value=2.4  Score=31.48  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=63.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCC------------chHHHHHHHHHHHcCCCCceEEEeCCchHH-
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDIT------------KEHYEKGLPIIQKAGVAHKIDFREGPALPL-   83 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~------------~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-   83 (187)
                      .+.+++|-.|++ |.++..+++.+. .+.+|+.+|.+            .+.++.+.+.+...+  .++.++.+|..+. 
T Consensus         8 l~gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   84 (287)
T 3pxx_A            8 VQDKVVLVTGGA-RGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRA   84 (287)
T ss_dssp             TTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHH
T ss_pred             cCCCEEEEeCCC-ChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHH
Confidence            356788988865 445555554442 25799999987            555666666666554  4788888887542 


Q ss_pred             -HHHHhhcc-cCCCceeEEEEcCCC---------ccc-----------HHHHHHHHhcccCCeEEEEe
Q 029836           84 -LDQLIQDE-KYHGTFDFVFVDADK---------DNY-----------VNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        84 -l~~~~~~~-~~~~~~D~v~~d~~~---------~~~-----------~~~~~~~~~~L~~gG~lv~~  129 (187)
                       +..+.+.. ...+.+|+++..+..         +.+           ....+.+.+.++++|.++.-
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  152 (287)
T 3pxx_A           85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT  152 (287)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence             22221110 002578999876531         111           12334556777788877754

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=92.56  E-value=0.4  Score=38.26  Aligned_cols=41  Identities=22%  Similarity=0.222  Sum_probs=30.3

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHH
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGL   61 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~   61 (187)
                      ++.+|+-+|+| .|..+..++..++  .+|+++|.++...+.++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~~~~~~~~  212 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQ  212 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCGGGHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHH
Confidence            57899999986 3445555666664  68999999998776653

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=92.45  E-value=0.31  Score=35.87  Aligned_cols=87  Identities=15%  Similarity=0.159  Sum_probs=51.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CC----EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           21 KNTMEIGVFTGYSLLATALAIPD-DG----KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~-~~----~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ++|.-||+|  ..+..++..+.. +.    +|+..|.+++..+.+.+.+   +.    +. ..+..+.+.          
T Consensus         3 ~~i~iIG~G--~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~---g~----~~-~~~~~e~~~----------   62 (247)
T 3gt0_A            3 KQIGFIGCG--NMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY---GL----TT-TTDNNEVAK----------   62 (247)
T ss_dssp             CCEEEECCS--HHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH---CC----EE-CSCHHHHHH----------
T ss_pred             CeEEEECcc--HHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh---CC----EE-eCChHHHHH----------
Confidence            467788875  444444433311 22    7999999988776554432   32    22 223333322          


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      ..|+||+--+.....+.++.+.+.+++|.+++
T Consensus        63 ~aDvVilav~~~~~~~v~~~l~~~l~~~~~vv   94 (247)
T 3gt0_A           63 NADILILSIKPDLYASIINEIKEIIKNDAIIV   94 (247)
T ss_dssp             HCSEEEECSCTTTHHHHC---CCSSCTTCEEE
T ss_pred             hCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence            46999987766777788888888888888766

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.36  E-value=0.88  Score=36.96  Aligned_cols=72  Identities=14%  Similarity=0.104  Sum_probs=51.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCc
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGT   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~   96 (187)
                      .++|+-+|+  |..+..+++.+.. +..|+.+|.+++.++.+.+.+       .+..++||+.+  .|.+..     -+.
T Consensus         3 ~M~iiI~G~--G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~Ag-----i~~   68 (461)
T 4g65_A            3 AMKIIILGA--GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEAG-----AQD   68 (461)
T ss_dssp             CEEEEEECC--SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHHT-----TTT
T ss_pred             cCEEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhcC-----CCc
Confidence            467888776  7788888888753 467999999999887665433       46788898865  455442     357


Q ss_pred             eeEEEEcCC
Q 029836           97 FDFVFVDAD  105 (187)
Q Consensus        97 ~D~v~~d~~  105 (187)
                      .|++++-..
T Consensus        69 ad~~ia~t~   77 (461)
T 4g65_A           69 ADMLVAVTN   77 (461)
T ss_dssp             CSEEEECCS
T ss_pred             CCEEEEEcC
Confidence            898887543

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=92.28  E-value=1.8  Score=34.95  Aligned_cols=102  Identities=15%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHH------------HHHcCCCCceEEEeCCchH
Q 029836           15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI------------IQKAGVAHKIDFREGPALP   82 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~------------~~~~~~~~~i~~~~~d~~~   82 (187)
                      .+..+-.+|--||+  |+++..++..+..+.+|+++|.+++.++...+.            +...  ..++++. .|..+
T Consensus        31 ~r~~~~mkIaVIGl--G~mG~~lA~~La~G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~--~~~l~~t-td~~e  105 (432)
T 3pid_A           31 GRGSEFMKITISGT--GYVGLSNGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEK--PLNFRAT-TDKHD  105 (432)
T ss_dssp             ----CCCEEEEECC--SHHHHHHHHHHHTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS--CCCEEEE-SCHHH
T ss_pred             ccccCCCEEEEECc--CHHHHHHHHHHHcCCeEEEEecCHHHhhHHhccCCccccccHHHHHhhc--cCCeEEE-cCHHH
Confidence            33445567888877  555555555444357999999999988765541            1110  1133332 23322


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCCc-----------ccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADKD-----------NYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .+          ...|+||+--+..           ......+.+.+ |++|.++|.....
T Consensus       106 a~----------~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv  155 (432)
T 3pid_A          106 AY----------RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTI  155 (432)
T ss_dssp             HH----------TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCC
T ss_pred             HH----------hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCC
Confidence            22          2468988765421           23556677778 9999888764443

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=92.25  E-value=0.092  Score=40.46  Aligned_cols=92  Identities=11%  Similarity=0.055  Sum_probs=58.3

Q ss_pred             EEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch--HHHHHHhhcccCCCce
Q 029836           22 NTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL--PLLDQLIQDEKYHGTF   97 (187)
Q Consensus        22 ~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~--~~l~~~~~~~~~~~~~   97 (187)
                      +||-+|+  +.|..+..+++..  +.++++++.+++..+.+++    .|. +.  ++..+..  +.+..+     ..+.+
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa-~~--v~~~~~~~~~~~~~~-----~~~~~  218 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQ----LGA-SE--VISREDVYDGTLKAL-----SKQQW  218 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHH----HTC-SE--EEEHHHHCSSCCCSS-----CCCCE
T ss_pred             eEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC-cE--EEECCCchHHHHHHh-----hcCCc
Confidence            8999996  5677778888775  4679999999888777654    343 21  1211000  001111     02468


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |+||-....    ..+..+.+.+++||.++.-..
T Consensus       219 d~vid~~g~----~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          219 QGAVDPVGG----KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             EEEEESCCT----HHHHHHHTTEEEEEEEEECCC
T ss_pred             cEEEECCcH----HHHHHHHHhhcCCCEEEEEec
Confidence            988754322    357888899999999987543

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=92.21  E-value=0.98  Score=34.65  Aligned_cols=89  Identities=13%  Similarity=0.017  Sum_probs=53.1

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CC-CEEEEEeCCch---HHHHHHHHHHHcCCCCceEEEeC-CchHHHHHHhhcccCC
Q 029836           21 KNTMEIGVFTGYSLLATALAIP-DD-GKILALDITKE---HYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDEKYH   94 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~-~~-~~v~~vd~~~~---~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~   94 (187)
                      ++|--||+  |..+..++..+. .+ .+|++.|.+++   ..+...+.+...|.       .. +..+.+          
T Consensus        25 m~IgvIG~--G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-------~~~s~~e~~----------   85 (317)
T 4ezb_A           25 TTIAFIGF--GEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-------EPLDDVAGI----------   85 (317)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-------EEESSGGGG----------
T ss_pred             CeEEEECc--cHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-------CCCCHHHHH----------
Confidence            57888887  555555554442 24 68999999873   22222233333332       22 332222          


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ...|+||+--+.......++.+.+.+++|.+++-
T Consensus        86 ~~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~  119 (317)
T 4ezb_A           86 ACADVVLSLVVGAATKAVAASAAPHLSDEAVFID  119 (317)
T ss_dssp             GGCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             hcCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEE
Confidence            2468998876655556666778888888887763

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=92.21  E-value=1.2  Score=36.16  Aligned_cols=97  Identities=12%  Similarity=0.117  Sum_probs=56.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCC------------CCceEEEeCCchHHHHHH
Q 029836           21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGV------------AHKIDFREGPALPLLDQL   87 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~------------~~~i~~~~~d~~~~l~~~   87 (187)
                      ++|.-||+  |+++..++..+. .+.+|+++|.+++.++..++.......            ..++++. .|..+.+   
T Consensus         3 mkI~VIG~--G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~d~~ea~---   76 (450)
T 3gg2_A            3 LDIAVVGI--GYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-TEIEQAV---   76 (450)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-SCHHHHG---
T ss_pred             CEEEEECc--CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-CCHHHHH---
Confidence            46778877  566555554442 146899999999887765541100000            1223332 2332221   


Q ss_pred             hhcccCCCceeEEEEcCCCc----------ccHHHHHHHHhcccCCeEEEEeC
Q 029836           88 IQDEKYHGTFDFVFVDADKD----------NYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~~~----------~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                             ...|+||+--+..          .....++.+.+.|++|.+++...
T Consensus        77 -------~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S  122 (450)
T 3gg2_A           77 -------PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS  122 (450)
T ss_dssp             -------GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             -------hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence                   2468998865422          45667788888899888777543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=92.20  E-value=1.1  Score=34.18  Aligned_cols=86  Identities=10%  Similarity=0.106  Sum_probs=56.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KYH   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~~   94 (187)
                      ..+++|-.|++ |.++..+++.+. .+.+|++++.+++..+.+.+.+...+...++.++..|..+.  +..+.+.. ...
T Consensus         7 ~~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            46789988865 445555555442 35799999999998888877777665444788888887542  22221111 013


Q ss_pred             CceeEEEEcCC
Q 029836           95 GTFDFVFVDAD  105 (187)
Q Consensus        95 ~~~D~v~~d~~  105 (187)
                      +.+|+++..+.
T Consensus        86 g~id~lv~nAg   96 (319)
T 3ioy_A           86 GPVSILCNNAG   96 (319)
T ss_dssp             CCEEEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            57899998754

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=92.17  E-value=1.5  Score=33.40  Aligned_cols=95  Identities=12%  Similarity=-0.019  Sum_probs=58.5

Q ss_pred             hhcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccC
Q 029836           16 KLINAKNTMEIG--VFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        16 ~~~~~~~vLeiG--~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ...+.++||-+|  .+.|..+..+++..  +.+|++++ +++..+.+    ++.|..   .++..+..+.+...      
T Consensus       149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~--Ga~vi~~~-~~~~~~~~----~~lGa~---~~i~~~~~~~~~~~------  212 (321)
T 3tqh_A          149 EVKQGDVVLIHAGAGGVGHLAIQLAKQK--GTTVITTA-SKRNHAFL----KALGAE---QCINYHEEDFLLAI------  212 (321)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEE-CHHHHHHH----HHHTCS---EEEETTTSCHHHHC------
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEe-ccchHHHH----HHcCCC---EEEeCCCcchhhhh------
Confidence            345678999986  44677888888876  46899887 44444444    445552   12322222212221      


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      -..+|+||-...    ...+..+.+.|+++|.++.-.
T Consensus       213 ~~g~D~v~d~~g----~~~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          213 STPVDAVIDLVG----GDVGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             CSCEEEEEESSC----HHHHHHHGGGEEEEEEEEECC
T ss_pred             ccCCCEEEECCC----cHHHHHHHHhccCCCEEEEeC
Confidence            357999885332    233478889999999998643

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=92.15  E-value=1.7  Score=32.33  Aligned_cols=85  Identities=12%  Similarity=0.107  Sum_probs=56.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~   93 (187)
                      .+.+.+|-.|.+.| ++..+++.+. .+++|+.+|.+++.++.+.+.+++.+  .++..+++|..+.  ...+.+.. ..
T Consensus         7 L~gKvalVTGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (255)
T 4g81_D            7 LTGKTALVTGSARG-LGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAE   83 (255)
T ss_dssp             CTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            46788888886655 4455554442 36899999999999888888888766  3778888876431  22221111 12


Q ss_pred             CCceeEEEEcCC
Q 029836           94 HGTFDFVFVDAD  105 (187)
Q Consensus        94 ~~~~D~v~~d~~  105 (187)
                      .++.|+++..+.
T Consensus        84 ~G~iDiLVNNAG   95 (255)
T 4g81_D           84 GIHVDILINNAG   95 (255)
T ss_dssp             TCCCCEEEECCC
T ss_pred             CCCCcEEEECCC
Confidence            578999987753

>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}

Probab=91.85  E-value=1.6  Score=27.81  Aligned_cols=78  Identities=13%  Similarity=0.011  Sum_probs=52.3

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK  121 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~  121 (187)
                      ..++..+|-++......++.+...|.  .+. ...+..+.+..+.     ...+|+|++|..  ..+-.++++.+.+.-+
T Consensus         7 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~   78 (130)
T 3eod_A            7 GKQILIVEDEQVFRSLLDSWFSSLGA--TTV-LAADGVDALELLG-----GFTPDLMICDIAMPRMNGLKLLEHIRNRGD   78 (130)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHT-----TCCCSEEEECCC-----CHHHHHHHHHTTC
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhCCc--eEE-EeCCHHHHHHHHh-----cCCCCEEEEecCCCCCCHHHHHHHHHhcCC
Confidence            46899999999999999999988765  333 3556666666553     457999999975  2334566666665433


Q ss_pred             CCeEEEEe
Q 029836          122 VGGVIGYD  129 (187)
Q Consensus       122 ~gG~lv~~  129 (187)
                      .--++++.
T Consensus        79 ~~~ii~~t   86 (130)
T 3eod_A           79 QTPVLVIS   86 (130)
T ss_dssp             CCCEEEEE
T ss_pred             CCCEEEEE
Confidence            33455554

>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}

Probab=91.79  E-value=1.5  Score=28.67  Aligned_cols=79  Identities=13%  Similarity=0.142  Sum_probs=52.1

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHh--c
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIE--L  119 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~--~  119 (187)
                      ..+|..+|-++......+..+...|.  ++. ...+..+.+..+.     ...+|+|++|...  ..-.++++.+..  .
T Consensus         8 ~~~iLivd~~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~~~~   79 (147)
T 2zay_A            8 WWRIMLVDTQLPALAASISALSQEGF--DII-QCGNAIEAVPVAV-----KTHPHLIITEANMPKISGMDLFNSLKKNPQ   79 (147)
T ss_dssp             CEEEEEECTTGGGGHHHHHHHHHHTE--EEE-EESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHHTSTT
T ss_pred             CceEEEEeCCHHHHHHHHHHHHHcCC--eEE-EeCCHHHHHHHHH-----cCCCCEEEEcCCCCCCCHHHHHHHHHcCcc
Confidence            46899999999999999988888654  333 3455555555543     3469999999763  234566666665  3


Q ss_pred             ccCCeEEEEeC
Q 029836          120 VKVGGVIGYDN  130 (187)
Q Consensus       120 L~~gG~lv~~~  130 (187)
                      .+.--++++.+
T Consensus        80 ~~~~pii~ls~   90 (147)
T 2zay_A           80 TASIPVIALSG   90 (147)
T ss_dssp             TTTSCEEEEES
T ss_pred             cCCCCEEEEeC
Confidence            33344666554

>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}

Probab=91.77  E-value=1.9  Score=28.49  Aligned_cols=79  Identities=14%  Similarity=0.050  Sum_probs=52.4

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHhccc
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIELVK  121 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~~L~  121 (187)
                      ..+|..+|-++......+..+...|.  .+. ...+..+.+..+.     ...+|+|++|...  .+-.++++.+....+
T Consensus        14 ~~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~   85 (153)
T 3hv2_A           14 RPEILLVDSQEVILQRLQQLLSPLPY--TLH-FARDATQALQLLA-----SREVDLVISAAHLPQMDGPTLLARIHQQYP   85 (153)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTTSSC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHHHCT
T ss_pred             CceEEEECCCHHHHHHHHHHhcccCc--EEE-EECCHHHHHHHHH-----cCCCCEEEEeCCCCcCcHHHHHHHHHhHCC
Confidence            36899999999999988888887653  333 3456666665553     3579999999762  334566676665433


Q ss_pred             CCeEEEEeC
Q 029836          122 VGGVIGYDN  130 (187)
Q Consensus       122 ~gG~lv~~~  130 (187)
                      .--++++.+
T Consensus        86 ~~~ii~~s~   94 (153)
T 3hv2_A           86 STTRILLTG   94 (153)
T ss_dssp             TSEEEEECC
T ss_pred             CCeEEEEEC
Confidence            334555543

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=91.76  E-value=0.34  Score=37.74  Aligned_cols=101  Identities=11%  Similarity=0.093  Sum_probs=53.6

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEE-EEeCCchHHHHHHHHHHHcCCCCceEEEeCCch--HHHHHHhhcc
Q 029836           17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKIL-ALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL--PLLDQLIQDE   91 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~-~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~--~~l~~~~~~~   91 (187)
                      ..+.++||-+|+  +.|..+..+++..  +++++ .++.++... ...+.+++.|. +.  ++..+..  +.+.....  
T Consensus       165 ~~~g~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~-~~~~~~~~lGa-~~--vi~~~~~~~~~~~~~~~--  236 (357)
T 1zsy_A          165 LQPGDSVIQNASNSGVGQAVIQIAAAL--GLRTINVVRDRPDIQ-KLSDRLKSLGA-EH--VITEEELRRPEMKNFFK--  236 (357)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEECCCSCHH-HHHHHHHHTTC-SE--EEEHHHHHSGGGGGTTS--
T ss_pred             cCCCCEEEEeCCcCHHHHHHHHHHHHc--CCEEEEEecCccchH-HHHHHHHhcCC-cE--EEecCcchHHHHHHHHh--
Confidence            345689999996  5777888888875  35554 445544321 11233445564 22  2221100  11111110  


Q ss_pred             cCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           92 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                       ..+.+|+||-...    ......+.+.|++||.++.-.
T Consensus       237 -~~~~~Dvvid~~g----~~~~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          237 -DMPQPRLALNCVG----GKSSTELLRQLARGGTMVTYG  270 (357)
T ss_dssp             -SSCCCSEEEESSC----HHHHHHHHTTSCTTCEEEECC
T ss_pred             -CCCCceEEEECCC----cHHHHHHHHhhCCCCEEEEEe
Confidence             0124898874322    122345789999999998643

>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0

Probab=91.76  E-value=1.8  Score=28.19  Aligned_cols=81  Identities=7%  Similarity=0.059  Sum_probs=53.1

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHh--c
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIE--L  119 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~--~  119 (187)
                      ..+|..+|-++......+..+...+.. .......+..+.+..+.     ...+|+|++|...  .+-.++++.+..  .
T Consensus         5 ~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~a~~~l~-----~~~~dlii~D~~l~~~~g~~~~~~lr~~~~   78 (144)
T 3kht_A            5 SKRVLVVEDNPDDIALIRRVLDRKDIH-CQLEFVDNGAKALYQVQ-----QAKYDLIILDIGLPIANGFEVMSAVRKPGA   78 (144)
T ss_dssp             CEEEEEECCCHHHHHHHHHHHHHTTCC-EEEEEESSHHHHHHHHT-----TCCCSEEEECTTCGGGCHHHHHHHHHSSST
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhcCCC-eeEEEECCHHHHHHHhh-----cCCCCEEEEeCCCCCCCHHHHHHHHHhccc
Confidence            368999999999999999999987752 12234456666666553     4679999999763  234556666655  2


Q ss_pred             ccCCeEEEEeC
Q 029836          120 VKVGGVIGYDN  130 (187)
Q Consensus       120 L~~gG~lv~~~  130 (187)
                      .+.--++++.+
T Consensus        79 ~~~~pii~~s~   89 (144)
T 3kht_A           79 NQHTPIVILTD   89 (144)
T ss_dssp             TTTCCEEEEET
T ss_pred             ccCCCEEEEeC
Confidence            22334566554

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=91.66  E-value=1.8  Score=34.37  Aligned_cols=89  Identities=12%  Similarity=0.106  Sum_probs=54.1

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC--------------CceEEEeCCchHHHHHH
Q 029836           22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA--------------HKIDFREGPALPLLDQL   87 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~--------------~~i~~~~~d~~~~l~~~   87 (187)
                      +|.-||+  |+.+..++..+..+.+|+++|.+++.++..++    .+..              .++++ ..+..+.+   
T Consensus         2 kI~VIG~--G~vG~~~A~~La~G~~V~~~d~~~~~~~~l~~----~~~~i~e~~l~~~~~~~~~~l~~-t~~~~~~~---   71 (402)
T 1dlj_A            2 KIAVAGS--GYVGLSLGVLLSLQNEVTIVDILPSKVDKINN----GLSPIQDEYIEYYLKSKQLSIKA-TLDSKAAY---   71 (402)
T ss_dssp             EEEEECC--SHHHHHHHHHHTTTSEEEEECSCHHHHHHHHT----TCCSSCCHHHHHHHHHSCCCEEE-ESCHHHHH---
T ss_pred             EEEEECC--CHHHHHHHHHHhCCCEEEEEECCHHHHHHHHc----CCCCcCCCCHHHHHHhccCcEEE-eCCHHHHh---
Confidence            5667776  67777766655445789999999887665432    1210              12222 22322222   


Q ss_pred             hhcccCCCceeEEEEcCCCc-----------ccHHHHHHHHhcccCCeEEEE
Q 029836           88 IQDEKYHGTFDFVFVDADKD-----------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                             ...|+||+--+..           .....++.+.+ +++|.+++.
T Consensus        72 -------~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~  115 (402)
T 1dlj_A           72 -------KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLII  115 (402)
T ss_dssp             -------HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEE
T ss_pred             -------cCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEE
Confidence                   2468998865432           25667777778 889888775

>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A

Probab=91.37  E-value=2.1  Score=28.18  Aligned_cols=79  Identities=8%  Similarity=-0.015  Sum_probs=51.8

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEE-EeCCchHHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDF-REGPALPLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK  121 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~-~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~  121 (187)
                      .+|..+|-++...+..+..+...+.  ...+ ...+..+.+..+.     ...+|+|++|..  ..+-.++++.+.+.-.
T Consensus        21 ~~iLivdd~~~~~~~l~~~L~~~~~--~~~v~~~~~~~~al~~l~-----~~~~dlii~D~~l~~~~g~~~~~~l~~~~~   93 (150)
T 4e7p_A           21 MKVLVAEDQSMLRDAMCQLLTLQPD--VESVLQAKNGQEAIQLLE-----KESVDIAILDVEMPVKTGLEVLEWIRSEKL   93 (150)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTSTT--EEEEEEESSHHHHHHHHT-----TSCCSEEEECSSCSSSCHHHHHHHHHHTTC
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCC--cEEEEEECCHHHHHHHhh-----ccCCCEEEEeCCCCCCcHHHHHHHHHHhCC
Confidence            4799999999999888888886542  2333 3456666666553     467999999976  2344566777665433


Q ss_pred             CCeEEEEeC
Q 029836          122 VGGVIGYDN  130 (187)
Q Consensus       122 ~gG~lv~~~  130 (187)
                      .--++++.+
T Consensus        94 ~~~ii~ls~  102 (150)
T 4e7p_A           94 ETKVVVVTT  102 (150)
T ss_dssp             SCEEEEEES
T ss_pred             CCeEEEEeC
Confidence            334555543

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=91.35  E-value=1.7  Score=33.03  Aligned_cols=85  Identities=13%  Similarity=0.111  Sum_probs=49.6

Q ss_pred             CCCEEEEEccc-ccHHHHH-HHhhCCCCCEEEEEeCCc------------------hHHHHHHHHHHHcCCCCceEEEeC
Q 029836           19 NAKNTMEIGVF-TGYSLLA-TALAIPDDGKILALDITK------------------EHYEKGLPIIQKAGVAHKIDFREG   78 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~-l~~~~~~~~~v~~vd~~~------------------~~~~~a~~~~~~~~~~~~i~~~~~   78 (187)
                      +..+|+-+|+| .|..... |+.. + -++++.+|.+.                  ...+.+++.+++.+-.-+++.+..
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~a-G-VG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~  112 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRC-G-IGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY  112 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHH-T-CSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHc-C-CCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecc
Confidence            45799999997 3443333 3333 2 47999999876                  566778888887664445666554


Q ss_pred             Cch--HHHHHHhh----cc-cCCCceeEEEEcCC
Q 029836           79 PAL--PLLDQLIQ----DE-KYHGTFDFVFVDAD  105 (187)
Q Consensus        79 d~~--~~l~~~~~----~~-~~~~~~D~v~~d~~  105 (187)
                      +..  +.+..+..    .. .....||+|+-..+
T Consensus       113 ~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D  146 (292)
T 3h8v_A          113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD  146 (292)
T ss_dssp             CTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS
T ss_pred             cCCcHHHHHHHhhhhcccccccCCCCCEEEECCc
Confidence            442  22232210    00 00147999985443

>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0

Probab=91.32  E-value=1.8  Score=27.41  Aligned_cols=78  Identities=17%  Similarity=0.191  Sum_probs=52.1

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhc--c
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIEL--V  120 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~--L  120 (187)
                      .+|..+|-++...+..++.++..|.  .+. ...+..+.+..+.     ...+|+|++|..  ..+-.++++.+...  .
T Consensus         4 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~   75 (127)
T 3i42_A            4 QQALIVEDYQAAAETFKELLEMLGF--QAD-YVMSGTDALHAMS-----TRGYDAVFIDLNLPDTSGLALVKQLRALPME   75 (127)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHTTE--EEE-EESSHHHHHHHHH-----HSCCSEEEEESBCSSSBHHHHHHHHHHSCCS
T ss_pred             ceEEEEcCCHHHHHHHHHHHHHcCC--CEE-EECCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHhhhcc
Confidence            5789999999999999999988764  333 3345655655553     357999999975  23445667777654  3


Q ss_pred             cCCeEEEEeC
Q 029836          121 KVGGVIGYDN  130 (187)
Q Consensus       121 ~~gG~lv~~~  130 (187)
                      +.--++++.+
T Consensus        76 ~~~~ii~~s~   85 (127)
T 3i42_A           76 KTSKFVAVSG   85 (127)
T ss_dssp             SCCEEEEEEC
T ss_pred             CCCCEEEEEC
Confidence            3334555543

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=91.26  E-value=1.5  Score=32.11  Aligned_cols=85  Identities=15%  Similarity=0.113  Sum_probs=55.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYH   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~   94 (187)
                      .+.+++|-.|++. .++..+++.+. .+.+|+.++.+++..+.+.+.++..+  .++.++.+|..+.  +..+.+.....
T Consensus         5 ~~~k~vlVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            5 PRNATVAVIGAGD-YIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH   81 (252)
T ss_dssp             CCSCEEEEECCSS-HHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence            3567888888654 45555554442 25799999999998888888887764  4788898887542  22222111001


Q ss_pred             CceeEEEEcCC
Q 029836           95 GTFDFVFVDAD  105 (187)
Q Consensus        95 ~~~D~v~~d~~  105 (187)
                      +.+|+++..+.
T Consensus        82 g~id~lv~nAg   92 (252)
T 3h7a_A           82 APLEVTIFNVG   92 (252)
T ss_dssp             SCEEEEEECCC
T ss_pred             CCceEEEECCC
Confidence            57899987654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=91.12  E-value=0.64  Score=33.59  Aligned_cols=73  Identities=11%  Similarity=0.031  Sum_probs=48.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCce-EEEeCCchHHHHHHhhcccCCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKI-DFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i-~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      .+.++||-+| ++|.++..+++.+. .+.+|++++.++...+....        .++ +++.+|..+.+...      -+
T Consensus        19 l~~~~ilVtG-atG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~------~~   83 (236)
T 3e8x_A           19 FQGMRVLVVG-ANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLEEDFSHA------FA   83 (236)
T ss_dssp             --CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTTSCCGGG------GT
T ss_pred             cCCCeEEEEC-CCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccHHHHHHH------Hc
Confidence            4578899888 56777777666552 35799999999876544322        367 88888886322222      34


Q ss_pred             ceeEEEEcCC
Q 029836           96 TFDFVFVDAD  105 (187)
Q Consensus        96 ~~D~v~~d~~  105 (187)
                      ..|.|+....
T Consensus        84 ~~D~vi~~ag   93 (236)
T 3e8x_A           84 SIDAVVFAAG   93 (236)
T ss_dssp             TCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899997654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=91.11  E-value=1.4  Score=32.62  Aligned_cols=83  Identities=11%  Similarity=0.029  Sum_probs=54.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~   95 (187)
                      +.+++|-.|++ |.++..+++.+. .+.+|+.++.+++..+...+.+...+...++.++.+|..+  .+..+.+.   .+
T Consensus         9 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~g   84 (267)
T 3t4x_A            9 KGKTALVTGST-AGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK---YP   84 (267)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHH---CC
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHh---cC
Confidence            46788888854 555555555442 2579999999998887777777665444567788887654  23333322   45


Q ss_pred             ceeEEEEcCC
Q 029836           96 TFDFVFVDAD  105 (187)
Q Consensus        96 ~~D~v~~d~~  105 (187)
                      ..|+++..+.
T Consensus        85 ~id~lv~nAg   94 (267)
T 3t4x_A           85 KVDILINNLG   94 (267)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899987653

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=91.11  E-value=1.5  Score=34.43  Aligned_cols=91  Identities=9%  Similarity=0.046  Sum_probs=56.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      +.++|.-||+  |..+..++..+. .+.+|++.|.+++..+.+.+    .+.    . ...+..+.+..       ....
T Consensus        21 ~~mkIgiIGl--G~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~----~g~----~-~~~s~~e~~~~-------a~~~   82 (358)
T 4e21_A           21 QSMQIGMIGL--GRMGADMVRRLRKGGHECVVYDLNVNAVQALER----EGI----A-GARSIEEFCAK-------LVKP   82 (358)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT----TTC----B-CCSSHHHHHHH-------SCSS
T ss_pred             cCCEEEEECc--hHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----CCC----E-EeCCHHHHHhc-------CCCC
Confidence            4568888987  555555544332 24789999999887654432    232    1 12334334332       2356


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |+|++--+.......++.+.+.|++|.+++
T Consensus        83 DvVi~~vp~~~v~~vl~~l~~~l~~g~iiI  112 (358)
T 4e21_A           83 RVVWLMVPAAVVDSMLQRMTPLLAANDIVI  112 (358)
T ss_dssp             CEEEECSCGGGHHHHHHHHGGGCCTTCEEE
T ss_pred             CEEEEeCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            999987654466777888888898887776

>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}

Probab=91.05  E-value=2.3  Score=28.07  Aligned_cols=79  Identities=11%  Similarity=0.055  Sum_probs=52.5

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHhccc
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIELVK  121 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~~L~  121 (187)
                      ..+|..+|-++......+..+...|.  ++. ...+..+.+..+.     ...+|+|++|...  .+-.++++.+...-+
T Consensus         7 ~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~   78 (154)
T 2rjn_A            7 NYTVMLVDDEQPILNSLKRLIKRLGC--NII-TFTSPLDALEALK-----GTSVQLVISDMRMPEMGGEVFLEQVAKSYP   78 (154)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESCHHHHHHHHT-----TSCCSEEEEESSCSSSCHHHHHHHHHHHCT
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHHcCC--eEE-EeCCHHHHHHHHh-----cCCCCEEEEecCCCCCCHHHHHHHHHHhCC
Confidence            46899999999999999988887654  333 4456656665553     4579999999763  234556666655433


Q ss_pred             CCeEEEEeC
Q 029836          122 VGGVIGYDN  130 (187)
Q Consensus       122 ~gG~lv~~~  130 (187)
                      .--++++.+
T Consensus        79 ~~~ii~ls~   87 (154)
T 2rjn_A           79 DIERVVISG   87 (154)
T ss_dssp             TSEEEEEEC
T ss_pred             CCcEEEEec
Confidence            334555544

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=90.97  E-value=0.87  Score=34.01  Aligned_cols=89  Identities=18%  Similarity=0.229  Sum_probs=53.1

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CC--EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC-c
Q 029836           21 KNTMEIGVFTGYSLLATALAIPD-DG--KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG-T   96 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~-~~--~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~-~   96 (187)
                      ++|.-||+|  .++..++..+.. +.  +|+++|.+++..+.++    +.|...  .. ..+..+.          -. .
T Consensus         2 ~~I~iIG~G--~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~----~~g~~~--~~-~~~~~~~----------~~~~   62 (281)
T 2g5c_A            2 QNVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID--EG-TTSIAKV----------EDFS   62 (281)
T ss_dssp             CEEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS--EE-ESCGGGG----------GGTC
T ss_pred             cEEEEEecC--HHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH----HCCCcc--cc-cCCHHHH----------hcCC
Confidence            367788874  444444433321 23  8999999988766543    334321  11 1232221          13 5


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|+|++-.+.......++.+.+.++++.+++.
T Consensus        63 aDvVilavp~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           63 PDFVMLSSPVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCEEEEcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence            79999877655666777777788888886653

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=90.86  E-value=3  Score=30.69  Aligned_cols=84  Identities=17%  Similarity=0.104  Sum_probs=54.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~   93 (187)
                      .+.+++|-.|++.| ++..+++.+. .+.+|+.++.+++..+.+.+.+...+  .++.++.+|..+.  +..+.+.. ..
T Consensus         9 l~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A            9 LTDKVVVISGVGPA-LGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             TTTCEEEEESCCTT-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCcH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46788999987554 4444444332 25799999999988888777777654  4788888887542  22221111 01


Q ss_pred             CCceeEEEEcC
Q 029836           94 HGTFDFVFVDA  104 (187)
Q Consensus        94 ~~~~D~v~~d~  104 (187)
                      .+..|+++..+
T Consensus        86 ~g~id~lv~nA   96 (264)
T 3ucx_A           86 YGRVDVVINNA   96 (264)
T ss_dssp             TSCCSEEEECC
T ss_pred             cCCCcEEEECC
Confidence            46789998765

>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}

Probab=90.84  E-value=2.4  Score=27.93  Aligned_cols=80  Identities=13%  Similarity=0.078  Sum_probs=51.2

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHH-cCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHhcc
Q 029836           44 DGKILALDITKEHYEKGLPIIQK-AGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIELV  120 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~~L  120 (187)
                      ..+|..+|-++......+..+.. .+.  .+.....+..+.+..+.     ...+|+|++|...  .+-.++++.+...-
T Consensus         5 ~~~ILivdd~~~~~~~l~~~L~~~~~~--~v~~~~~~~~~a~~~l~-----~~~~dlii~D~~l~~~~g~~~~~~l~~~~   77 (153)
T 3cz5_A            5 TARIMLVDDHPIVREGYRRLIERRPGY--AVVAEAADAGEAYRLYR-----ETTPDIVVMDLTLPGPGGIEATRHIRQWD   77 (153)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHTTSTTE--EEEEEESSHHHHHHHHH-----TTCCSEEEECSCCSSSCHHHHHHHHHHHC
T ss_pred             ccEEEEECCcHHHHHHHHHHHhhCCCc--EEEEEeCCHHHHHHHHh-----cCCCCEEEEecCCCCCCHHHHHHHHHHhC
Confidence            35789999999988888888865 332  22224566666665553     4579999999763  23456666666553


Q ss_pred             cCCeEEEEeC
Q 029836          121 KVGGVIGYDN  130 (187)
Q Consensus       121 ~~gG~lv~~~  130 (187)
                      ..--++++.+
T Consensus        78 ~~~~ii~ls~   87 (153)
T 3cz5_A           78 GAARILIFTM   87 (153)
T ss_dssp             TTCCEEEEES
T ss_pred             CCCeEEEEEC
Confidence            3334666543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=90.68  E-value=1.9  Score=31.55  Aligned_cols=86  Identities=14%  Similarity=0.025  Sum_probs=52.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc--hH--HHHHHhhcc-
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA--LP--LLDQLIQDE-   91 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~--~l~~~~~~~-   91 (187)
                      .+.+++|-.|++ |.++..+++.+. .+.+|+.++.+++..+.+.+.+...+. .++.++..|.  .+  ....+.+.. 
T Consensus        10 l~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (252)
T 3f1l_A           10 LNDRIILVTGAS-DGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRIA   87 (252)
T ss_dssp             TTTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHHH
Confidence            356788888855 455555555442 257999999999888777766665432 3667777776  21  222221110 


Q ss_pred             cCCCceeEEEEcCC
Q 029836           92 KYHGTFDFVFVDAD  105 (187)
Q Consensus        92 ~~~~~~D~v~~d~~  105 (187)
                      ...+..|+++..+.
T Consensus        88 ~~~g~id~lv~nAg  101 (252)
T 3f1l_A           88 VNYPRLDGVLHNAG  101 (252)
T ss_dssp             HHCSCCSEEEECCC
T ss_pred             HhCCCCCEEEECCc
Confidence            01467899987643

>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0

Probab=90.62  E-value=1.5  Score=28.36  Aligned_cols=79  Identities=14%  Similarity=0.042  Sum_probs=50.5

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc----ccHHHHHHHHhc
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD----NYVNYHKRLIEL  119 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~----~~~~~~~~~~~~  119 (187)
                      ..+|..+|-++......+..++..|.  ++. ...+..+.+..+.     ...+|+|++|....    +-.++++.+...
T Consensus         6 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~   77 (136)
T 3kto_A            6 HPIIYLVDHQKDARAALSKLLSPLDV--TIQ-CFASAESFMRQQI-----SDDAIGMIIEAHLEDKKDSGIELLETLVKR   77 (136)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHTTSSS--EEE-EESSHHHHTTSCC-----CTTEEEEEEETTGGGBTTHHHHHHHHHHHT
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHHCCc--EEE-EeCCHHHHHHHHh-----ccCCCEEEEeCcCCCCCccHHHHHHHHHhC
Confidence            35899999999999988888887654  333 3445555554442     45799999998633    334566666554


Q ss_pred             ccCCeEEEEeC
Q 029836          120 VKVGGVIGYDN  130 (187)
Q Consensus       120 L~~gG~lv~~~  130 (187)
                      -+.--++++..
T Consensus        78 ~~~~~ii~~s~   88 (136)
T 3kto_A           78 GFHLPTIVMAS   88 (136)
T ss_dssp             TCCCCEEEEES
T ss_pred             CCCCCEEEEEc
Confidence            33334555543

>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}

Probab=90.62  E-value=3  Score=28.67  Aligned_cols=79  Identities=14%  Similarity=0.124  Sum_probs=53.6

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK  121 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~  121 (187)
                      ..+|..+|-++......+..+...|.  .+ ....+..+.+..+.     ...+|+|++|..  ..+-.++++.+...-.
T Consensus         7 ~~~iLivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~al~~~~-----~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~   78 (184)
T 3rqi_A            7 DKNFLVIDDNEVFAGTLARGLERRGY--AV-RQAHNKDEALKLAG-----AEKFEFITVXLHLGNDSGLSLIAPLCDLQP   78 (184)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTC--EE-EEECSHHHHHHHHT-----TSCCSEEEECSEETTEESHHHHHHHHHHCT
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHHCCC--EE-EEeCCHHHHHHHHh-----hCCCCEEEEeccCCCccHHHHHHHHHhcCC
Confidence            36899999999999999999988764  34 34556666666653     467999999975  2234566666665433


Q ss_pred             CCeEEEEeC
Q 029836          122 VGGVIGYDN  130 (187)
Q Consensus       122 ~gG~lv~~~  130 (187)
                      .--++++..
T Consensus        79 ~~~ii~lt~   87 (184)
T 3rqi_A           79 DARILVLTG   87 (184)
T ss_dssp             TCEEEEEES
T ss_pred             CCCEEEEeC
Confidence            334555543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=90.52  E-value=1.9  Score=31.32  Aligned_cols=84  Identities=13%  Similarity=0.091  Sum_probs=54.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KYH   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~~   94 (187)
                      +.+++|-.|+ +|.++..+++.+. .+.+|+.++.+++..+...+.++..+  .++.++.+|..+.  +..+.+.. ...
T Consensus         4 ~~k~vlITGa-s~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            4 NEKVALVTGA-SRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN   80 (247)
T ss_dssp             TTCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4678888885 4555555555442 25799999999988888777777665  4788888887542  22221111 014


Q ss_pred             CceeEEEEcCC
Q 029836           95 GTFDFVFVDAD  105 (187)
Q Consensus        95 ~~~D~v~~d~~  105 (187)
                      +.+|+++..+.
T Consensus        81 ~~id~li~~Ag   91 (247)
T 3lyl_A           81 LAIDILVNNAG   91 (247)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            57899987653

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=90.51  E-value=4.4  Score=30.48  Aligned_cols=82  Identities=11%  Similarity=0.050  Sum_probs=53.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH------HHHHhhcc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL------LDQLIQDE   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~~~~~~   91 (187)
                      +.+++|-.|+ +|.++..+++.+. .+.+|+.++.+++..+.+.+.++..+. .++.++.+|..+.      +....+. 
T Consensus        40 ~~k~vlVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~-  116 (293)
T 3rih_A           40 SARSVLVTGG-TKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGA-GNVIGVRLDVSDPGSCADAARTVVDA-  116 (293)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSS-SCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC-CcEEEEEEeCCCHHHHHHHHHHHHHH-
Confidence            4567887775 4555565555442 257999999999888877777765542 4788888887542      2222211 


Q ss_pred             cCCCceeEEEEcCC
Q 029836           92 KYHGTFDFVFVDAD  105 (187)
Q Consensus        92 ~~~~~~D~v~~d~~  105 (187)
                        .+.+|+++..+.
T Consensus       117 --~g~iD~lvnnAg  128 (293)
T 3rih_A          117 --FGALDVVCANAG  128 (293)
T ss_dssp             --HSCCCEEEECCC
T ss_pred             --cCCCCEEEECCC
Confidence              357899987653

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=90.41  E-value=1.8  Score=31.32  Aligned_cols=83  Identities=16%  Similarity=0.099  Sum_probs=53.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc--h--H----HHHHHh
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA--L--P----LLDQLI   88 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~--~--~----~l~~~~   88 (187)
                      .+.+++|-.|++ |.++..+++.+. .+.+|+.++.+++..+.+.+.++..+. .+..++..|.  .  +    ....+.
T Consensus        12 l~~k~vlITGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~d~d~~~~~~~~~~~~~~~   89 (247)
T 3i1j_A           12 LKGRVILVTGAA-RGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQ-PQPLIIALNLENATAQQYRELAARVE   89 (247)
T ss_dssp             TTTCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTS-CCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC-CCceEEEeccccCCHHHHHHHHHHHH
Confidence            356788888854 555666555442 257999999999988888888877654 4566666554  1  1    122222


Q ss_pred             hcccCCCceeEEEEcCC
Q 029836           89 QDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~  105 (187)
                      +.   .+.+|+++..+.
T Consensus        90 ~~---~g~id~lv~nAg  103 (247)
T 3i1j_A           90 HE---FGRLDGLLHNAS  103 (247)
T ss_dssp             HH---HSCCSEEEECCC
T ss_pred             Hh---CCCCCEEEECCc
Confidence            11   257899987653

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=90.36  E-value=4.5  Score=30.31  Aligned_cols=108  Identities=17%  Similarity=0.184  Sum_probs=62.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchH-HHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEH-YEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KY   93 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~-~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~   93 (187)
                      +.+++|-.|++ |.++..+++.+. .+.+|+.++.+++. .+.+.+.++..+  .++.++.+|..+.  +..+.+.. ..
T Consensus        46 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGD-SGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45788888854 455555555442 25789999988753 444445455444  4788888887542  22221110 00


Q ss_pred             CCceeEEEEcCC---C-c-----c---c-----------HHHHHHHHhcccCCeEEEEe
Q 029836           94 HGTFDFVFVDAD---K-D-----N---Y-----------VNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        94 ~~~~D~v~~d~~---~-~-----~---~-----------~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+..|+++..+.   . .     .   +           ....+.+.+.++++|.+|.-
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i  181 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT  181 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence            357899987643   1 1     0   1           12344556778888877754

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=90.29  E-value=2.3  Score=34.65  Aligned_cols=99  Identities=14%  Similarity=0.058  Sum_probs=56.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHc---CC---------CCceEEEeCCchHHH
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKA---GV---------AHKIDFREGPALPLL   84 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~---~~---------~~~i~~~~~d~~~~l   84 (187)
                      ....+|.-||+|  +++..++..+. .+.+|+++|.+++.++..++.....   ++         ..++++ ..|..+.+
T Consensus         6 ~~~~~I~VIG~G--~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a~   82 (478)
T 2y0c_A            6 HGSMNLTIIGSG--SVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAAV   82 (478)
T ss_dssp             -CCCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHHH
T ss_pred             CCCceEEEECcC--HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHHh
Confidence            456789999885  33333333222 1468999999998877655421000   00         012322 22322222


Q ss_pred             HHHhhcccCCCceeEEEEcCCC----------cccHHHHHHHHhcccCCeEEEEe
Q 029836           85 DQLIQDEKYHGTFDFVFVDADK----------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~----------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                                ...|+||+--+.          ......++.+.+.|++|.+++..
T Consensus        83 ----------~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~  127 (478)
T 2y0c_A           83 ----------AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDK  127 (478)
T ss_dssp             ----------HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             ----------hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEe
Confidence                      246899886542          34566777788889998877643

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=90.26  E-value=2.3  Score=31.76  Aligned_cols=89  Identities=17%  Similarity=0.183  Sum_probs=53.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           20 AKNTMEIGVFTGYSLLATALAI---PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~---~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .++|.-||+|.  .+..++..+   +.+.+|+++|.+++..+.+++    .|...  . ...+..+.+          ..
T Consensus         6 ~~~I~iIG~G~--mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~--~-~~~~~~~~~----------~~   66 (290)
T 3b1f_A            6 EKTIYIAGLGL--IGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIVD--E-ATADFKVFA----------AL   66 (290)
T ss_dssp             CCEEEEECCSH--HHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSCS--E-EESCTTTTG----------GG
T ss_pred             cceEEEEeeCH--HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCcc--c-ccCCHHHhh----------cC
Confidence            45788898753  333333322   114689999999877665433    33311  1 122322221          25


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhc-ccCCeEEE
Q 029836           97 FDFVFVDADKDNYVNYHKRLIEL-VKVGGVIG  127 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~-L~~gG~lv  127 (187)
                      .|+|++-.+.......++.+.+. ++++.+++
T Consensus        67 aDvVilavp~~~~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           67 ADVIILAVPIKKTIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             CCEEEEcCCHHHHHHHHHHHHhcCCCCCCEEE
Confidence            69999877655567777777777 88877665

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=90.22  E-value=1.2  Score=33.30  Aligned_cols=86  Identities=7%  Similarity=0.019  Sum_probs=54.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH---HHHHhhcc-c
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL---LDQLIQDE-K   92 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---l~~~~~~~-~   92 (187)
                      .+.+++|-.|++ |.++..+++.+. .+.+|+.++.+++..+.+.+.+...+. .++.++.+|..+.   +..+.+.. .
T Consensus        10 ~~~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~   87 (311)
T 3o26_A           10 TKRRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKT   87 (311)
T ss_dssp             --CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHH
Confidence            356788888855 555666555442 357999999999888777777766543 5788888887543   22221110 0


Q ss_pred             CCCceeEEEEcCC
Q 029836           93 YHGTFDFVFVDAD  105 (187)
Q Consensus        93 ~~~~~D~v~~d~~  105 (187)
                      ..+.+|+++..+.
T Consensus        88 ~~g~iD~lv~nAg  100 (311)
T 3o26_A           88 HFGKLDILVNNAG  100 (311)
T ss_dssp             HHSSCCEEEECCC
T ss_pred             hCCCCCEEEECCc
Confidence            0257999998764

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=90.22  E-value=1.5  Score=32.94  Aligned_cols=87  Identities=17%  Similarity=0.099  Sum_probs=55.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP----DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDE   91 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~----~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~   91 (187)
                      .+.+++|-.|++ |.++..+++.+.    ...+|+.++.+++.++.+.+.+.......++.++.+|..+  .+..+.+..
T Consensus        31 l~~k~~lVTGas-~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~  109 (287)
T 3rku_A           31 LAKKTVLITGAS-AGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENL  109 (287)
T ss_dssp             HTTCEEEEESTT-SHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred             cCCCEEEEecCC-ChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            467889999865 445555554442    1239999999998888777777664333578888888754  233332221


Q ss_pred             -cCCCceeEEEEcCC
Q 029836           92 -KYHGTFDFVFVDAD  105 (187)
Q Consensus        92 -~~~~~~D~v~~d~~  105 (187)
                       ...+..|+++..+.
T Consensus       110 ~~~~g~iD~lVnnAG  124 (287)
T 3rku_A          110 PQEFKDIDILVNNAG  124 (287)
T ss_dssp             CGGGCSCCEEEECCC
T ss_pred             HHhcCCCCEEEECCC
Confidence             01357899987653

>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}

Probab=90.17  E-value=2.5  Score=27.14  Aligned_cols=79  Identities=11%  Similarity=-0.145  Sum_probs=53.1

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC---cccHHHHHHHHhcc
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK---DNYVNYHKRLIELV  120 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~---~~~~~~~~~~~~~L  120 (187)
                      ..+|..+|-++......+..++..|.  .+.....+..+.+..+.     ...+|+|++|...   ..-.++++.+... 
T Consensus         9 ~~~iLivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~-----~~~~dlii~d~~~~~~~~g~~~~~~l~~~-   80 (140)
T 3cg0_A            9 LPGVLIVEDGRLAAATLRIQLESLGY--DVLGVFDNGEEAVRCAP-----DLRPDIALVDIMLCGALDGVETAARLAAG-   80 (140)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHH-----HHCCSEEEEESSCCSSSCHHHHHHHHHHH-
T ss_pred             CceEEEEECCHHHHHHHHHHHHHCCC--eeEEEECCHHHHHHHHH-----hCCCCEEEEecCCCCCCCHHHHHHHHHhC-
Confidence            46899999999999999998988654  34333566666655553     3469999999753   2345667776665 


Q ss_pred             cCCeEEEEeC
Q 029836          121 KVGGVIGYDN  130 (187)
Q Consensus       121 ~~gG~lv~~~  130 (187)
                      ..--++++.+
T Consensus        81 ~~~~ii~ls~   90 (140)
T 3cg0_A           81 CNLPIIFITS   90 (140)
T ss_dssp             SCCCEEEEEC
T ss_pred             CCCCEEEEec
Confidence            3344555543

>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}

Probab=90.13  E-value=2.1  Score=28.43  Aligned_cols=68  Identities=22%  Similarity=0.237  Sum_probs=48.7

Q ss_pred             CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCcc--cHHHHHHHH
Q 029836           43 DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDN--YVNYHKRLI  117 (187)
Q Consensus        43 ~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~--~~~~~~~~~  117 (187)
                      ++-+|..||-++......+..++..|..  ......+..+.+..+.     ...||+|++|.....  =.++++.++
T Consensus        11 k~~rILiVDD~~~~r~~l~~~L~~~G~~--~v~~a~~g~~al~~~~-----~~~~DlillD~~MP~mdG~el~~~ir   80 (134)
T 3to5_A           11 KNMKILIVDDFSTMRRIVKNLLRDLGFN--NTQEADDGLTALPMLK-----KGDFDFVVTDWNMPGMQGIDLLKNIR   80 (134)
T ss_dssp             TTCCEEEECSCHHHHHHHHHHHHHTTCC--CEEEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCc--EEEEECCHHHHHHHHH-----hCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence            3568999999999999999999998762  2234567766666554     357999999986333  345566655

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=90.13  E-value=1.4  Score=33.73  Aligned_cols=81  Identities=17%  Similarity=0.156  Sum_probs=51.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCC---CceEEEeCCchHH--HHHHhhcc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVA---HKIDFREGPALPL--LDQLIQDE   91 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~--l~~~~~~~   91 (187)
                      ...++||-+| |+|.++..+++.+- .+.+|++++.++.........+......   .+++++.+|..+.  +..+    
T Consensus        23 ~~~~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~----   97 (351)
T 3ruf_A           23 FSPKTWLITG-VAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQV----   97 (351)
T ss_dssp             HSCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHH----
T ss_pred             CCCCeEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH----
Confidence            3578999888 67888888776652 3579999998655333222333322110   4789999988653  3333    


Q ss_pred             cCCCceeEEEEcCC
Q 029836           92 KYHGTFDFVFVDAD  105 (187)
Q Consensus        92 ~~~~~~D~v~~d~~  105 (187)
                        -..+|.||.-+.
T Consensus        98 --~~~~d~Vih~A~  109 (351)
T 3ruf_A           98 --MKGVDHVLHQAA  109 (351)
T ss_dssp             --TTTCSEEEECCC
T ss_pred             --hcCCCEEEECCc
Confidence              347899987654

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=90.09  E-value=1.7  Score=31.85  Aligned_cols=84  Identities=15%  Similarity=0.057  Sum_probs=53.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP--DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KY   93 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~--~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~   93 (187)
                      +.+++|-.| |+|.++..+++.+.  .+.+|++++.+++..+...+.+...+  .++.++.+|..+.  +..+.+.. ..
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            456788777 56777777766553  25799999999887777666676554  4678888886542  22221110 00


Q ss_pred             CCceeEEEEcCC
Q 029836           94 HGTFDFVFVDAD  105 (187)
Q Consensus        94 ~~~~D~v~~d~~  105 (187)
                      .+.+|+|+..+.
T Consensus        80 ~g~id~li~~Ag   91 (276)
T 1wma_A           80 YGGLDVLVNNAG   91 (276)
T ss_dssp             HSSEEEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            247899987643

>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}

Probab=90.06  E-value=2.6  Score=27.09  Aligned_cols=78  Identities=13%  Similarity=0.094  Sum_probs=51.1

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc-------ccHHHHHHHH
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD-------NYVNYHKRLI  117 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~-------~~~~~~~~~~  117 (187)
                      .+|..+|-++......+..++..|.  .+. ...+..+.+..+.     ...+|+|++|....       .-.++++.+.
T Consensus         4 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~   75 (140)
T 2qr3_A            4 GTIIIVDDNKGVLTAVQLLLKNHFS--KVI-TLSSPVSLSTVLR-----EENPEVVLLDMNFTSGINNGNEGLFWLHEIK   75 (140)
T ss_dssp             CEEEEECSCHHHHHHHHHHHTTTSS--EEE-EECCHHHHHHHHH-----HSCEEEEEEETTTTC-----CCHHHHHHHHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHhCCc--EEE-EeCCHHHHHHHHH-----cCCCCEEEEeCCcCCCCCCCccHHHHHHHHH
Confidence            5789999999998888888877654  333 3455555555553     34699999997532       3455666666


Q ss_pred             hcccCCeEEEEeC
Q 029836          118 ELVKVGGVIGYDN  130 (187)
Q Consensus       118 ~~L~~gG~lv~~~  130 (187)
                      +..+.--++++.+
T Consensus        76 ~~~~~~~ii~ls~   88 (140)
T 2qr3_A           76 RQYRDLPVVLFTA   88 (140)
T ss_dssp             HHCTTCCEEEEEE
T ss_pred             hhCcCCCEEEEEC
Confidence            5543444666543

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=90.06  E-value=1.1  Score=33.27  Aligned_cols=86  Identities=12%  Similarity=0.122  Sum_probs=52.5

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836           22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v  100 (187)
                      +|.-||+  |.++..++..+. .+.+|+++|.+++..+.+.    +.+...  .. ..+..+.           ...|+|
T Consensus         2 ~i~iiG~--G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~----~~g~~~--~~-~~~~~~~-----------~~~D~v   61 (279)
T 2f1k_A            2 KIGVVGL--GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV----ERQLVD--EA-GQDLSLL-----------QTAKII   61 (279)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH----HTTSCS--EE-ESCGGGG-----------TTCSEE
T ss_pred             EEEEEcC--cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----hCCCCc--cc-cCCHHHh-----------CCCCEE
Confidence            5777887  444444444332 1358999999987765543    334321  11 2232222           246999


Q ss_pred             EEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836          101 FVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus       101 ~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      ++-.+.......++.+.+.++++.+++
T Consensus        62 i~av~~~~~~~~~~~l~~~~~~~~~vv   88 (279)
T 2f1k_A           62 FLCTPIQLILPTLEKLIPHLSPTAIVT   88 (279)
T ss_dssp             EECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             EEECCHHHHHHHHHHHHhhCCCCCEEE
Confidence            987765566777788878888887665

>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}

Probab=90.05  E-value=2.6  Score=27.15  Aligned_cols=78  Identities=14%  Similarity=0.094  Sum_probs=52.3

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHh--c
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIE--L  119 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~--~  119 (187)
                      ..+|..+|-++......+..+...|.  ++ ....+..+.+..+.     ...+|+|++|..  ..+-.++++.+..  .
T Consensus         6 ~~~iLivdd~~~~~~~l~~~l~~~g~--~v-~~~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~   77 (140)
T 3grc_A            6 RPRILICEDDPDIARLLNLMLEKGGF--DS-DMVHSAAQALEQVA-----RRPYAAMTVDLNLPDQDGVSLIRALRRDSR   77 (140)
T ss_dssp             CSEEEEECSCHHHHHHHHHHHHHTTC--EE-EEECSHHHHHHHHH-----HSCCSEEEECSCCSSSCHHHHHHHHHTSGG
T ss_pred             CCCEEEEcCCHHHHHHHHHHHHHCCC--eE-EEECCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHhCcc
Confidence            46899999999999999999988765  33 23456666665553     357999999976  2334566666665  3


Q ss_pred             ccCCeEEEEe
Q 029836          120 VKVGGVIGYD  129 (187)
Q Consensus       120 L~~gG~lv~~  129 (187)
                      .+.--++++.
T Consensus        78 ~~~~~ii~~s   87 (140)
T 3grc_A           78 TRDLAIVVVS   87 (140)
T ss_dssp             GTTCEEEEEC
T ss_pred             cCCCCEEEEe
Confidence            3333455554

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=90.02  E-value=2.7  Score=31.14  Aligned_cols=87  Identities=15%  Similarity=0.045  Sum_probs=55.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~   93 (187)
                      .+.+++|-.|+ +|.++..+++.+. .+.+|++++.++...+...+.++..+...++.++.+|..+.  +..+.+.. ..
T Consensus        30 l~~k~vlVTGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           30 WRDRLALVTGA-SGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ  108 (279)
T ss_dssp             GTTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            35678888884 5666666665442 25799999999888777777777666545788888886542  22221110 00


Q ss_pred             CCceeEEEEcCC
Q 029836           94 HGTFDFVFVDAD  105 (187)
Q Consensus        94 ~~~~D~v~~d~~  105 (187)
                      .+.+|+++..+.
T Consensus       109 ~g~iD~vi~~Ag  120 (279)
T 1xg5_A          109 HSGVDICINNAG  120 (279)
T ss_dssp             HCCCSEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            247899987653

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=89.99  E-value=1.5  Score=28.66  Aligned_cols=93  Identities=18%  Similarity=0.120  Sum_probs=50.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~   95 (187)
                      +.++|+-+|+  |..+..+++.+. .+.+|+.+|.+++..+.++    ..    ...++.+|..+  .+....     .+
T Consensus         5 ~~~~v~I~G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~----~~----~~~~~~~d~~~~~~l~~~~-----~~   69 (144)
T 2hmt_A            5 KNKQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----SY----ATHAVIANATEENELLSLG-----IR   69 (144)
T ss_dssp             -CCSEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT----TT----CSEEEECCTTCHHHHHTTT-----GG
T ss_pred             cCCcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----Hh----CCEEEEeCCCCHHHHHhcC-----CC
Confidence            3467999996  666666665442 2467999999876554322    11    23456666543  222210     24


Q ss_pred             ceeEEEEcCCCc-ccHHHHHHHHhcccCCeEEE
Q 029836           96 TFDFVFVDADKD-NYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        96 ~~D~v~~d~~~~-~~~~~~~~~~~~L~~gG~lv  127 (187)
                      .+|+|++..... ..........+.+.+. .++
T Consensus        70 ~~d~vi~~~~~~~~~~~~~~~~~~~~~~~-~ii  101 (144)
T 2hmt_A           70 NFEYVIVAIGANIQASTLTTLLLKELDIP-NIW  101 (144)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHHTTCS-EEE
T ss_pred             CCCEEEECCCCchHHHHHHHHHHHHcCCC-eEE
Confidence            689999866532 2222333334455665 444

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=89.94  E-value=0.56  Score=45.96  Aligned_cols=103  Identities=9%  Similarity=0.002  Sum_probs=66.2

Q ss_pred             hcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIG--VFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG--~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..++++||-.|  .|.|..++.+++..  +++|++++.+++..+.+++.+...+. ..  ++.....++...+.... ..
T Consensus      1665 l~~Ge~VLI~gaaGgVG~aAiqlAk~~--Ga~Viat~~s~~k~~~l~~~~~~lga-~~--v~~~~~~~~~~~i~~~t-~g 1738 (2512)
T 2vz8_A         1665 MQPGESVLIHSGSGGVGQAAIAIALSR--GCRVFTTVGSAEKRAYLQARFPQLDE-TC--FANSRDTSFEQHVLRHT-AG 1738 (2512)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTCCS-TT--EEESSSSHHHHHHHHTT-TS
T ss_pred             CCCCCEEEEEeCChHHHHHHHHHHHHc--CCEEEEEeCChhhhHHHHhhcCCCCc-eE--EecCCCHHHHHHHHHhc-CC
Confidence            44678999987  46677788888876  47999999998887777654432333 12  22222223333332211 02


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+|+|+--..    ...+...++.|+++|.++.-
T Consensus      1739 ~GvDvVld~~g----~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A         1739 KGVDLVLNSLA----EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp             CCEEEEEECCC----HHHHHHHHTTEEEEEEEEEC
T ss_pred             CCceEEEECCC----chHHHHHHHhcCCCcEEEEe
Confidence            36999985331    46688899999999988763

>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}

Probab=89.90  E-value=2.7  Score=27.14  Aligned_cols=84  Identities=11%  Similarity=-0.044  Sum_probs=51.2

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHh----
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIE----  118 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~----  118 (187)
                      .+|..+|-++......+..+...+....+ ....+..+.+..+.........+|+|++|...  .+-.++++.+..    
T Consensus        10 ~~iLivdd~~~~~~~l~~~l~~~~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~   88 (146)
T 3ilh_A           10 DSVLLIDDDDIVNFLNTTIIRMTHRVEEI-QSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQP   88 (146)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTTCCEEEE-EEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGG
T ss_pred             ceEEEEeCCHHHHHHHHHHHHhcCCCeee-eecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhh
Confidence            57999999998888888888876542122 23456655555543200001579999999762  334566777665    


Q ss_pred             cccCCeEEEEe
Q 029836          119 LVKVGGVIGYD  129 (187)
Q Consensus       119 ~L~~gG~lv~~  129 (187)
                      ....--++++.
T Consensus        89 ~~~~~~ii~~t   99 (146)
T 3ilh_A           89 MKNKSIVCLLS   99 (146)
T ss_dssp             GTTTCEEEEEC
T ss_pred             ccCCCeEEEEe
Confidence            33333455543

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=89.82  E-value=1.4  Score=39.44  Aligned_cols=76  Identities=9%  Similarity=-0.084  Sum_probs=53.1

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCC--EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhc--------
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDG--KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD--------   90 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~--------   90 (187)
                      .+++|+-||.|..++-+..+   +.  .+.++|+++.+.+..+.|+      +...++.+|..++.......        
T Consensus       541 l~~iDLFaG~GGlslGl~~A---G~~~vv~avEid~~A~~ty~~N~------p~~~~~~~DI~~l~~~~~~~di~~~~~~  611 (1002)
T 3swr_A          541 LRTLDVFSGCGGLSEGFHQA---GISDTLWAIEMWDPAAQAFRLNN------PGSTVFTEDCNILLKLVMAGETTNSRGQ  611 (1002)
T ss_dssp             EEEEEESCTTSHHHHHHHHH---TSEEEEEEECSSHHHHHHHHHHC------TTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred             CeEEEeccCccHHHHHHHHC---CCCceEEEEECCHHHHHHHHHhC------CCCccccccHHHHhhhccchhhhhhhhh
Confidence            48999999999999988765   33  5789999999888776665      35667888876654321100        


Q ss_pred             -ccCCCceeEEEEcCC
Q 029836           91 -EKYHGTFDFVFVDAD  105 (187)
Q Consensus        91 -~~~~~~~D~v~~d~~  105 (187)
                       ....+.+|+|+...+
T Consensus       612 ~lp~~~~vDll~GGpP  627 (1002)
T 3swr_A          612 RLPQKGDVEMLCGGPP  627 (1002)
T ss_dssp             BCCCTTTCSEEEECCC
T ss_pred             hcccCCCeeEEEEcCC
Confidence             001246899988765

>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A

Probab=89.69  E-value=3.1  Score=27.43  Aligned_cols=79  Identities=13%  Similarity=0.086  Sum_probs=51.6

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHhccc
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIELVK  121 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~~L~  121 (187)
                      ..+|..+|-++......+..+...|.  ++. ...+..+.+..+.     ...+|+|++|...  ..-.++++.+....+
T Consensus         3 ~~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dliild~~l~~~~g~~~~~~l~~~~~   74 (155)
T 1qkk_A            3 APSVFLIDDDRDLRKAMQQTLELAGF--TVS-SFASATEALAGLS-----ADFAGIVISDIRMPGMDGLALFRKILALDP   74 (155)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHTCC-----TTCCSEEEEESCCSSSCHHHHHHHHHHHCT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCc--EEE-EECCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHhhCC
Confidence            35789999999999989999988664  333 3455555555442     4579999999763  234556666665533


Q ss_pred             CCeEEEEeC
Q 029836          122 VGGVIGYDN  130 (187)
Q Consensus       122 ~gG~lv~~~  130 (187)
                      .--++++.+
T Consensus        75 ~~pii~ls~   83 (155)
T 1qkk_A           75 DLPMILVTG   83 (155)
T ss_dssp             TSCEEEEEC
T ss_pred             CCCEEEEEC
Confidence            344666544

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=89.56  E-value=3  Score=33.15  Aligned_cols=90  Identities=18%  Similarity=0.075  Sum_probs=54.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC--C--CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCC
Q 029836           21 KNTMEIGVFTGYSLLATALAIPD--D--GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYH   94 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~--~--~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~   94 (187)
                      ++|+-+|+  |..+..+++.+..  .  ..|+.++.+++..+...+.+...+- .++..+..|..+  .+..+.+.    
T Consensus         2 ~kVlIiGa--GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~-~~~~~~~~D~~d~~~l~~~l~~----   74 (405)
T 4ina_A            2 AKVLQIGA--GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGY-GEIDITTVDADSIEELVALINE----   74 (405)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTC-CCCEEEECCTTCHHHHHHHHHH----
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcC-CceEEEEecCCCHHHHHHHHHh----
Confidence            47889988  5666666655432  2  3899999999887766666654321 357777777643  33443211    


Q ss_pred             CceeEEEEcCCCcccHHHHHHHH
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLI  117 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~  117 (187)
                      ...|+|+............+.+.
T Consensus        75 ~~~DvVin~ag~~~~~~v~~a~l   97 (405)
T 4ina_A           75 VKPQIVLNIALPYQDLTIMEACL   97 (405)
T ss_dssp             HCCSEEEECSCGGGHHHHHHHHH
T ss_pred             hCCCEEEECCCcccChHHHHHHH
Confidence            13799987765433344444443

>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}

Probab=89.55  E-value=2.9  Score=26.96  Aligned_cols=79  Identities=13%  Similarity=0.079  Sum_probs=52.8

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHH-cCCCCceEEEeCCchHHHHHHhhcccCC-CceeEEEEcCCCc-c--cHHHHHHHHh
Q 029836           44 DGKILALDITKEHYEKGLPIIQK-AGVAHKIDFREGPALPLLDQLIQDEKYH-GTFDFVFVDADKD-N--YVNYHKRLIE  118 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~l~~~~~~~~~~-~~~D~v~~d~~~~-~--~~~~~~~~~~  118 (187)
                      ..+|..+|-++......+..+.. .+.  ++. ...+..+.+..+.     . ..+|+|++|.... .  -.++++.+..
T Consensus         4 ~~~ilivdd~~~~~~~l~~~L~~~~~~--~v~-~~~~~~~a~~~l~-----~~~~~dlvi~D~~l~~~~~g~~~~~~l~~   75 (140)
T 3lua_A            4 DGTVLLIDYFEYEREKTKIIFDNIGEY--DFI-EVENLKKFYSIFK-----DLDSITLIIMDIAFPVEKEGLEVLSAIRN   75 (140)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHHCCC--EEE-EECSHHHHHTTTT-----TCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhccCc--cEE-EECCHHHHHHHHh-----cCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence            36899999999999999999988 654  344 4456655555543     4 6899999998644 2  3455666655


Q ss_pred             --cccCCeEEEEeC
Q 029836          119 --LVKVGGVIGYDN  130 (187)
Q Consensus       119 --~L~~gG~lv~~~  130 (187)
                        ..+.--++++..
T Consensus        76 ~~~~~~~~ii~ls~   89 (140)
T 3lua_A           76 NSRTANTPVIIATK   89 (140)
T ss_dssp             SGGGTTCCEEEEES
T ss_pred             CcccCCCCEEEEeC
Confidence              344445666544

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=89.36  E-value=2.9  Score=29.44  Aligned_cols=68  Identities=12%  Similarity=-0.023  Sum_probs=45.4

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836           22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v  100 (187)
                      +||-+| ++|.++..+++.+. .+.+|++++.++......       .  .+++++.+|..+.-...      -..+|.|
T Consensus         2 kvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-------~--~~~~~~~~D~~d~~~~~------~~~~d~v   65 (221)
T 3ew7_A            2 KIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT-------H--KDINILQKDIFDLTLSD------LSDQNVV   65 (221)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH-------C--SSSEEEECCGGGCCHHH------HTTCSEE
T ss_pred             eEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhhhc-------c--CCCeEEeccccChhhhh------hcCCCEE
Confidence            678777 56777777665552 257999999987654321       1  47889999987643322      2468999


Q ss_pred             EEcCC
Q 029836          101 FVDAD  105 (187)
Q Consensus       101 ~~d~~  105 (187)
                      +....
T Consensus        66 i~~ag   70 (221)
T 3ew7_A           66 VDAYG   70 (221)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            87654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=89.33  E-value=3.3  Score=30.10  Aligned_cols=83  Identities=18%  Similarity=0.088  Sum_probs=54.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KYH   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~~   94 (187)
                      +.+++|-.|+. |.++..+++.+. .+.+|+.++.+++..+.+.+.++..+  .++.++.+|..+.  +..+.+.. ...
T Consensus         8 ~~k~vlITGas-~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            8 ENKVGIVTGSG-GGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            56788988854 555566555442 25799999999988887777776654  4788888887542  22221110 002


Q ss_pred             CceeEEEEcC
Q 029836           95 GTFDFVFVDA  104 (187)
Q Consensus        95 ~~~D~v~~d~  104 (187)
                      +.+|+++..+
T Consensus        85 g~id~li~~A   94 (253)
T 3qiv_A           85 GGIDYLVNNA   94 (253)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4789999765

>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}

Probab=89.18  E-value=3.1  Score=26.75  Aligned_cols=80  Identities=16%  Similarity=-0.027  Sum_probs=51.6

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHH-cCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHh--
Q 029836           44 DGKILALDITKEHYEKGLPIIQK-AGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIE--  118 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~--  118 (187)
                      ..+|..+|-++......+..+.. .+.  ++.....+..+.+..+.     ...+|+|++|...  ..-.++++.+..  
T Consensus         8 ~~~iLivdd~~~~~~~l~~~L~~~~~~--~~v~~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~~~   80 (143)
T 3cnb_A            8 DFSILIIEDDKEFADMLTQFLENLFPY--AKIKIAYNPFDAGDLLH-----TVKPDVVMLDLMMVGMDGFSICHRIKSTP   80 (143)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHHHHCTT--CEEEEECSHHHHHHHHH-----HTCCSEEEEETTCTTSCHHHHHHHHHTST
T ss_pred             CceEEEEECCHHHHHHHHHHHHhccCc--cEEEEECCHHHHHHHHH-----hcCCCEEEEecccCCCcHHHHHHHHHhCc
Confidence            46899999999999999999988 665  32334455655555543     3469999999763  234566666665  


Q ss_pred             cccCCeEEEEeC
Q 029836          119 LVKVGGVIGYDN  130 (187)
Q Consensus       119 ~L~~gG~lv~~~  130 (187)
                      ..+.--++++.+
T Consensus        81 ~~~~~~ii~~s~   92 (143)
T 3cnb_A           81 ATANIIVIAMTG   92 (143)
T ss_dssp             TTTTSEEEEEES
T ss_pred             cccCCcEEEEeC
Confidence            223334555543

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=89.17  E-value=5.3  Score=29.44  Aligned_cols=111  Identities=14%  Similarity=0.131  Sum_probs=63.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCC-chHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-c
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDIT-KEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-K   92 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~   92 (187)
                      .+.+++|-.|++ |.++..+++.+. .+.+|+.++.. ++..+...+.++..+  .++.++.+|..+.  +..+.+.. .
T Consensus        16 l~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   92 (270)
T 3is3_A           16 LDGKVALVTGSG-RGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVA   92 (270)
T ss_dssp             CTTCEEEESCTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            356788888855 445555555442 25788887764 455566666666654  4788888886542  22221110 0


Q ss_pred             CCCceeEEEEcCCC-----------ccc-----------HHHHHHHHhcccCCeEEEEeCc
Q 029836           93 YHGTFDFVFVDADK-----------DNY-----------VNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        93 ~~~~~D~v~~d~~~-----------~~~-----------~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..+..|+++..+..           +++           ....+.+.+.++++|.+|+-..
T Consensus        93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            02578999876431           011           1233455677888888776444

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=89.16  E-value=2.8  Score=31.20  Aligned_cols=85  Identities=13%  Similarity=0.126  Sum_probs=52.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~   93 (187)
                      .+++++|-.|++ |.++..+++.+. .+.+|+.++.+++..+.+.+.++..+  .++.++.+|..+.  +..+.+.. ..
T Consensus        22 ~~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (279)
T 3sju_A           22 SRPQTAFVTGVS-SGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVER   98 (279)
T ss_dssp             ---CEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            356788988855 445555554442 25799999999988887777776654  4788888887542  22221110 00


Q ss_pred             CCceeEEEEcCC
Q 029836           94 HGTFDFVFVDAD  105 (187)
Q Consensus        94 ~~~~D~v~~d~~  105 (187)
                      .+..|+++..+.
T Consensus        99 ~g~id~lv~nAg  110 (279)
T 3sju_A           99 FGPIGILVNSAG  110 (279)
T ss_dssp             HCSCCEEEECCC
T ss_pred             cCCCcEEEECCC
Confidence            357899987653

>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y

Probab=89.15  E-value=2.8  Score=26.14  Aligned_cols=78  Identities=17%  Similarity=0.103  Sum_probs=49.1

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcccC
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKV  122 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~  122 (187)
                      .++..+|-++......+..++..|.  .+.....+..+.+..+.     ...+|+|++|....  +-.++++.+.+.-..
T Consensus         3 ~~ilivdd~~~~~~~l~~~l~~~g~--~vv~~~~~~~~a~~~~~-----~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~   75 (120)
T 1tmy_A            3 KRVLIVDDAAFMRMMLKDIITKAGY--EVAGEATNGREAVEKYK-----ELKPDIVTMDITMPEMNGIDAIKEIMKIDPN   75 (120)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HHCCSEEEEECSCGGGCHHHHHHHHHHHCTT
T ss_pred             ceEEEEcCcHHHHHHHHHHHhhcCc--EEEEEECCHHHHHHHHH-----hcCCCEEEEeCCCCCCcHHHHHHHHHhhCCC
Confidence            4688899999988888888887654  33334556666655543     34689999997632  334556665543222


Q ss_pred             CeEEEEe
Q 029836          123 GGVIGYD  129 (187)
Q Consensus       123 gG~lv~~  129 (187)
                      --++++.
T Consensus        76 ~~ii~~s   82 (120)
T 1tmy_A           76 AKIIVCS   82 (120)
T ss_dssp             CCEEEEE
T ss_pred             CeEEEEe
Confidence            2355543

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=89.01  E-value=5.3  Score=29.27  Aligned_cols=86  Identities=17%  Similarity=0.095  Sum_probs=50.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KYH   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~~   94 (187)
                      +.+++|-.|+ +|.++..+++.+. .+.+|++++.+++..+.+.+.+.......++.++.+|..+.  +..+.+.. ...
T Consensus         6 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            6 NGKVALVTGA-AQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            5678888885 5555666655442 25799999998876665555453321124688888886542  22221110 002


Q ss_pred             CceeEEEEcCC
Q 029836           95 GTFDFVFVDAD  105 (187)
Q Consensus        95 ~~~D~v~~d~~  105 (187)
                      +.+|+++..+.
T Consensus        85 g~id~lv~~Ag   95 (267)
T 2gdz_A           85 GRLDILVNNAG   95 (267)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            46899987754

>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}

Probab=88.82  E-value=3.3  Score=26.65  Aligned_cols=79  Identities=15%  Similarity=0.137  Sum_probs=52.3

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHh--c
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIE--L  119 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~--~  119 (187)
                      ..+|..+|-++...+..+..+...|.  ++. ...+..+.+..+.     ...+|+|++|...  ..-.++++.+..  .
T Consensus         7 ~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~~~~   78 (142)
T 3cg4_A            7 KGDVMIVDDDAHVRIAVKTILSDAGF--HII-SADSGGQCIDLLK-----KGFSGVVLLDIMMPGMDGWDTIRAILDNSL   78 (142)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----TCCCEEEEEESCCSSSCHHHHHHHHHHTTC
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHHCCe--EEE-EeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence            46899999999999999999988764  333 3455555555553     4579999999763  234566666665  3


Q ss_pred             ccCCeEEEEeC
Q 029836          120 VKVGGVIGYDN  130 (187)
Q Consensus       120 L~~gG~lv~~~  130 (187)
                      ...--++++.+
T Consensus        79 ~~~~pii~~s~   89 (142)
T 3cg4_A           79 EQGIAIVMLTA   89 (142)
T ss_dssp             CTTEEEEEEEC
T ss_pred             cCCCCEEEEEC
Confidence            33334555543

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=88.79  E-value=0.76  Score=36.13  Aligned_cols=76  Identities=12%  Similarity=0.062  Sum_probs=45.1

Q ss_pred             cCCCEEEEEccc---ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           18 INAKNTMEIGVF---TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        18 ~~~~~vLeiG~g---~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      .+.++||-+|+|   .|..+..+++..  +.+|++++.+++..+.+++    .|...-+.....+..+.+..+..    .
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~v~~~t~----~  238 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKD--GIKLVNIVRKQEQADLLKA----QGAVHVCNAASPTFMQDLTEALV----S  238 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHH----TTCSCEEETTSTTHHHHHHHHHH----H
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHh----CCCcEEEeCCChHHHHHHHHHhc----C
Confidence            567899998544   455666777765  4689999999988877654    55422222222233333333211    2


Q ss_pred             CceeEEEEc
Q 029836           95 GTFDFVFVD  103 (187)
Q Consensus        95 ~~~D~v~~d  103 (187)
                      ..+|+||-.
T Consensus       239 ~g~d~v~d~  247 (379)
T 3iup_A          239 TGATIAFDA  247 (379)
T ss_dssp             HCCCEEEES
T ss_pred             CCceEEEEC
Confidence            369988843

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=88.67  E-value=3.5  Score=30.70  Aligned_cols=85  Identities=13%  Similarity=0.048  Sum_probs=54.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~   93 (187)
                      .+.+++|-.|++ |.++..+++.+. .+.+|+.++.+++..+...+.++..+  .++.++.+|..+.  +..+.+.. ..
T Consensus        30 l~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~  106 (276)
T 3r1i_A           30 LSGKRALITGAS-TGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTGE  106 (276)
T ss_dssp             CTTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            356788888865 455555554442 25799999999988888777777655  4678888886542  22221110 00


Q ss_pred             CCceeEEEEcCC
Q 029836           94 HGTFDFVFVDAD  105 (187)
Q Consensus        94 ~~~~D~v~~d~~  105 (187)
                      .+.+|+++..+.
T Consensus       107 ~g~iD~lvnnAg  118 (276)
T 3r1i_A          107 LGGIDIAVCNAG  118 (276)
T ss_dssp             HSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            257899997654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=88.66  E-value=1.5  Score=31.23  Aligned_cols=73  Identities=16%  Similarity=0.145  Sum_probs=46.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCC
Q 029836           21 KNTMEIGVFTGYSLLATALAIP--DDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHG   95 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~--~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~   95 (187)
                      ++||-+| ++|.++..+++.+.  .+.+|++++.+++ .++...    ..  ..+++++.+|..+.  +....      .
T Consensus         6 k~vlVtG-asg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~~--~~~~~~~~~D~~d~~~~~~~~------~   72 (221)
T 3r6d_A            6 XYITILG-AAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----ID--HERVTVIEGSFQNPGXLEQAV------T   72 (221)
T ss_dssp             SEEEEES-TTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----HT--STTEEEEECCTTCHHHHHHHH------T
T ss_pred             EEEEEEe-CCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----cC--CCceEEEECCCCCHHHHHHHH------c
Confidence            4588888 55666666655443  3679999999876 443221    11  25788999988642  33332      3


Q ss_pred             ceeEEEEcCCC
Q 029836           96 TFDFVFVDADK  106 (187)
Q Consensus        96 ~~D~v~~d~~~  106 (187)
                      ..|+|+.....
T Consensus        73 ~~d~vv~~ag~   83 (221)
T 3r6d_A           73 NAEVVFVGAME   83 (221)
T ss_dssp             TCSEEEESCCC
T ss_pred             CCCEEEEcCCC
Confidence            67999987653

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=88.64  E-value=5.6  Score=29.29  Aligned_cols=80  Identities=11%  Similarity=0.022  Sum_probs=46.3

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEeC
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFREG   78 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~~   78 (187)
                      +..+|+-+|+| .|......+...+ -++++.+|.+.                   ...+.+++.+.+.+-.-+++.+..
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~G-vg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  105 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAG-VGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQ  105 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTT-CSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcC-CCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence            46799999997 4443333333322 47899998764                   445666677776543334555554


Q ss_pred             Cch-HHHHHHhhcccCCCceeEEEEcCC
Q 029836           79 PAL-PLLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        79 d~~-~~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      ... +.+..+      -..+|+|+.-.+
T Consensus       106 ~~~~~~~~~~------~~~~DvVi~~~d  127 (251)
T 1zud_1          106 RLTGEALKDA------VARADVVLDCTD  127 (251)
T ss_dssp             CCCHHHHHHH------HHHCSEEEECCS
T ss_pred             cCCHHHHHHH------HhcCCEEEECCC
Confidence            332 223333      236899985443

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=88.63  E-value=1.1  Score=33.74  Aligned_cols=88  Identities=9%  Similarity=-0.023  Sum_probs=54.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-C---CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPD-D---GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~-~---~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      .++|.-||+|  ..+..++..+.. +   .+|+..|.+++..+.+.+.   .+    ++. ..+..+.+          .
T Consensus         3 ~~~I~iIG~G--~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~---~g----i~~-~~~~~~~~----------~   62 (280)
T 3tri_A            3 TSNITFIGGG--NMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK---CG----VHT-TQDNRQGA----------L   62 (280)
T ss_dssp             CSCEEEESCS--HHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT---TC----CEE-ESCHHHHH----------S
T ss_pred             CCEEEEEccc--HHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH---cC----CEE-eCChHHHH----------h
Confidence            3578889885  444444333211 2   3799999999877655442   22    232 22332222          2


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhc-ccCCeEEE
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIEL-VKVGGVIG  127 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~-L~~gG~lv  127 (187)
                      ..|+|++--.++...+.++.+.+. ++++.+++
T Consensus        63 ~aDvVilav~p~~~~~vl~~l~~~~l~~~~iii   95 (280)
T 3tri_A           63 NADVVVLAVKPHQIKMVCEELKDILSETKILVI   95 (280)
T ss_dssp             SCSEEEECSCGGGHHHHHHHHHHHHHTTTCEEE
T ss_pred             cCCeEEEEeCHHHHHHHHHHHHhhccCCCeEEE
Confidence            469999987777778888888887 87776655

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=88.54  E-value=6.4  Score=29.59  Aligned_cols=85  Identities=18%  Similarity=0.216  Sum_probs=55.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~   93 (187)
                      .+.+++|-.|++ |.++..+++.+. .+.+|+.++.+++.++.+.+.++..+  .++.++.+|..+.  +..+.+.. ..
T Consensus        29 l~gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           29 FDGRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRL  105 (301)
T ss_dssp             STTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            356789988865 445555555442 25799999999998888877777654  4788888887542  22221110 00


Q ss_pred             CCceeEEEEcCC
Q 029836           94 HGTFDFVFVDAD  105 (187)
Q Consensus        94 ~~~~D~v~~d~~  105 (187)
                      .+.+|+++..+.
T Consensus       106 ~g~id~lvnnAg  117 (301)
T 3tjr_A          106 LGGVDVVFSNAG  117 (301)
T ss_dssp             HSSCSEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            257899987754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=88.52  E-value=3.2  Score=31.91  Aligned_cols=98  Identities=14%  Similarity=0.088  Sum_probs=57.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHH----cCCCC--ceEEEeCCchHHHHHHhhccc
Q 029836           20 AKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQK----AGVAH--KIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~----~~~~~--~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      ..+|.-||+|  ..+..++..+. .+.+|+.+|.+++.++..++....    .+...  ++.....+.    ...     
T Consensus         4 ~mki~iiG~G--~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----   72 (359)
T 1bg6_A            4 SKTYAVLGLG--NGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDI----GLA-----   72 (359)
T ss_dssp             CCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCH----HHH-----
T ss_pred             cCeEEEECCC--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCH----HHH-----
Confidence            3689999885  44444443331 146899999998877655442100    00000  000111222    221     


Q ss_pred             CCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       -..+|+|++-.+.....+.++.+.+.+++|..++..
T Consensus        73 -~~~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           73 -VKDADVILIVVPAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             -HTTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             -HhcCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc
Confidence             135799999877666678888888899998877643

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=88.47  E-value=1.3  Score=34.14  Aligned_cols=77  Identities=16%  Similarity=0.113  Sum_probs=52.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCC--CC-EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhccc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPD--DG-KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEK   92 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~--~~-~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~   92 (187)
                      .+.++||-.| |+|.++..+++.+..  +. +|++++.++.......+.+.    ..+++++.+|..+.  +...     
T Consensus        19 ~~~k~vlVTG-atG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~-----   88 (344)
T 2gn4_A           19 LDNQTILITG-GTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN----DPRMRFFIGDVRDLERLNYA-----   88 (344)
T ss_dssp             TTTCEEEEET-TTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC----CTTEEEEECCTTCHHHHHHH-----
T ss_pred             hCCCEEEEEC-CCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc----CCCEEEEECCCCCHHHHHHH-----
Confidence            4567899887 578888777665531  33 89999998876655444442    15789999998653  3333     


Q ss_pred             CCCceeEEEEcCC
Q 029836           93 YHGTFDFVFVDAD  105 (187)
Q Consensus        93 ~~~~~D~v~~d~~  105 (187)
                       -..+|.||..+.
T Consensus        89 -~~~~D~Vih~Aa  100 (344)
T 2gn4_A           89 -LEGVDICIHAAA  100 (344)
T ss_dssp             -TTTCSEEEECCC
T ss_pred             -HhcCCEEEECCC
Confidence             346899997664

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=88.40  E-value=6  Score=31.16  Aligned_cols=121  Identities=11%  Similarity=0.102  Sum_probs=66.0

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHH-HHHcCCCCceEEEeCCch
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPI-IQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~-~~~~~~~~~i~~~~~d~~   81 (187)
                      +|...++-+.++.......++-+++|+..... +...+.++.+|+..+..-. ........ ++..|.  ++.++..+..
T Consensus        66 ~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~--~~~~v~~~d~  142 (400)
T 3nmy_A           66 NPTRFAYERCVAALEGGTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGL--DFSFVDLTDP  142 (400)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCC--EEEEECTTSH
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCe--EEEEECCCCH
Confidence            46667777778877777788877777655444 3333344567777776544 33444444 555554  4555554433


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc-CCeEEEEeCcC
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK-VGGVIGYDNTL  132 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~  132 (187)
                      +.+....     .+...+|++...  +......++.+.++.+ .|..+++|++.
T Consensus       143 ~~l~~~i-----~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~  191 (400)
T 3nmy_A          143 AAFKAAI-----RADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTF  191 (400)
T ss_dssp             HHHHHHC-----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred             HHHHHHh-----ccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCC
Confidence            4444332     345578887543  1111111333433333 35667777764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=88.40  E-value=6.6  Score=29.54  Aligned_cols=88  Identities=9%  Similarity=-0.027  Sum_probs=50.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..+++|+-||+|  ..+..+++.+. .+.+|+++|.+++..+.+.    ..+.    +...  . +.+..+      -..
T Consensus       153 l~g~~v~IiG~G--~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~----~~g~----~~~~--~-~~l~~~------l~~  213 (293)
T 3d4o_A          153 IHGANVAVLGLG--RVGMSVARKFAALGAKVKVGARESDLLARIA----EMGM----EPFH--I-SKAAQE------LRD  213 (293)
T ss_dssp             STTCEEEEECCS--HHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTTS----EEEE--G-GGHHHH------TTT
T ss_pred             CCCCEEEEEeeC--HHHHHHHHHHHhCCCEEEEEECCHHHHHHHH----HCCC----eecC--h-hhHHHH------hcC
Confidence            457899999975  44444433221 1469999999886544332    3332    2221  1 123333      246


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      .|+|+...+......   .....+++|++++
T Consensus       214 aDvVi~~~p~~~i~~---~~l~~mk~~~~li  241 (293)
T 3d4o_A          214 VDVCINTIPALVVTA---NVLAEMPSHTFVI  241 (293)
T ss_dssp             CSEEEECCSSCCBCH---HHHHHSCTTCEEE
T ss_pred             CCEEEECCChHHhCH---HHHHhcCCCCEEE
Confidence            799998765322211   3445789998876

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=88.36  E-value=8.4  Score=30.74  Aligned_cols=123  Identities=15%  Similarity=0.103  Sum_probs=66.7

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHH-HHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHY-EKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~-~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|...++-+.++........+-+++|+......+...+.++.+|++.+..-... ......++..|.  ++.++..+..+
T Consensus        81 ~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~--~~~~v~~~d~~  158 (430)
T 3ri6_A           81 NPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGI--EVRFVDVMDSL  158 (430)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTC--EEEEECTTCHH
T ss_pred             CHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCC--EEEEeCCCCHH
Confidence            466677777787777777777777766544444444455456777766654333 333335556665  56666544333


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  133 (187)
                      .+....     .....+|++...  +......++.+.++.+. |..+++|++..
T Consensus       159 ~l~~ai-----~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~  207 (430)
T 3ri6_A          159 AVEHAC-----DETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMT  207 (430)
T ss_dssp             HHHHHC-----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTS
T ss_pred             HHHHhh-----CCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence            333332     345678887543  11111113334444443 55677787754

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=88.34  E-value=2.4  Score=32.40  Aligned_cols=86  Identities=19%  Similarity=0.141  Sum_probs=49.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+++|.-||.  |..+..+++.+. .+.+|++.|.++.. +.+    ...|.    +.  .+..+.++          ..
T Consensus       141 ~g~~vgIiG~--G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~----~~~g~----~~--~~l~ell~----------~a  197 (307)
T 1wwk_A          141 EGKTIGIIGF--GRIGYQVAKIANALGMNILLYDPYPNE-ERA----KEVNG----KF--VDLETLLK----------ES  197 (307)
T ss_dssp             TTCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSSCCH-HHH----HHTTC----EE--CCHHHHHH----------HC
T ss_pred             CCceEEEEcc--CHHHHHHHHHHHHCCCEEEEECCCCCh-hhH----hhcCc----cc--cCHHHHHh----------hC
Confidence            4568888877  555555554331 24799999998865 222    23332    22  24333333          45


Q ss_pred             eEEEEcCCC-cccHHHH-HHHHhcccCCeEEE
Q 029836           98 DFVFVDADK-DNYVNYH-KRLIELVKVGGVIG  127 (187)
Q Consensus        98 D~v~~d~~~-~~~~~~~-~~~~~~L~~gG~lv  127 (187)
                      |+|++..+. .....++ +...+.||+|++++
T Consensus       198 DvV~l~~p~~~~t~~li~~~~l~~mk~ga~li  229 (307)
T 1wwk_A          198 DVVTIHVPLVESTYHLINEERLKLMKKTAILI  229 (307)
T ss_dssp             SEEEECCCCSTTTTTCBCHHHHHHSCTTCEEE
T ss_pred             CEEEEecCCChHHhhhcCHHHHhcCCCCeEEE
Confidence            999987652 2222223 34567889999887

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=88.31  E-value=3.2  Score=30.49  Aligned_cols=85  Identities=13%  Similarity=0.061  Sum_probs=54.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~   93 (187)
                      .+.+++|-.|+ +|.++..+++.+. .+.+|+.++.+++..+...+.+...+  .++.++.+|..+.  +..+.+.. ..
T Consensus        27 l~~k~vlITGa-s~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           27 LSGQVAVVTGA-SRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAA  103 (262)
T ss_dssp             TTTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHh
Confidence            34678888885 4556666665542 35789999999988888777777654  4788888887532  22221110 00


Q ss_pred             CCceeEEEEcCC
Q 029836           94 HGTFDFVFVDAD  105 (187)
Q Consensus        94 ~~~~D~v~~d~~  105 (187)
                      .+..|+++..+.
T Consensus       104 ~g~id~lv~~Ag  115 (262)
T 3rkr_A          104 HGRCDVLVNNAG  115 (262)
T ss_dssp             HSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            257899987643

>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*

Probab=88.23  E-value=3.1  Score=25.67  Aligned_cols=77  Identities=19%  Similarity=0.231  Sum_probs=49.2

Q ss_pred             EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcccCC
Q 029836           46 KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKVG  123 (187)
Q Consensus        46 ~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~g  123 (187)
                      ++..+|-++......+..+...|.  .+. ...+..+.+..+.     ...+|+|++|....  +-.++++.+.+.-..-
T Consensus         3 ~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~~~-----~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~   74 (116)
T 3a10_A            3 RILVVDDEPNIRELLKEELQEEGY--EID-TAENGEEALKKFF-----SGNYDLVILDIEMPGISGLEVAGEIRKKKKDA   74 (116)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSCCSSSCHHHHHHHHHHHCTTC
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHh-----cCCCCEEEEECCCCCCCHHHHHHHHHccCCCC
Confidence            678899999998888888887654  333 4455555555543     34689999997632  3345566655443233


Q ss_pred             eEEEEeC
Q 029836          124 GVIGYDN  130 (187)
Q Consensus       124 G~lv~~~  130 (187)
                      -++++.+
T Consensus        75 ~ii~~s~   81 (116)
T 3a10_A           75 KIILLTA   81 (116)
T ss_dssp             CEEEEES
T ss_pred             eEEEEEC
Confidence            4555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	187
d1susa1	227	c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransfera	3e-52
d2avda1	219	c.66.1.1 (A:44-262) COMT domain-containing protein	1e-40
d2cl5a1	214	c.66.1.1 (A:3-216) Catechol O-methyltransferase, C	3e-27
d2bm8a1	232	c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI	5e-09
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	8e-05
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	2e-04
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	2e-04

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  164 bits (417), Expect = 3e-52
 Identities = 147/186 (79%), Positives = 168/186 (90%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M TS DE QF SMLLKLINAKNTMEIGV+TGYSLLATALAIP+DGKILA+DI KE+YE G
Sbjct: 41  MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELG 100

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
           LP+I+KAGV HKIDFREGPALP+LD++I+DEK HG++DF+FVDADKDNY+NYHKRLI+LV
Sbjct: 101 LPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLV 160

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           KVGGVIGYDNTLW GSVVAPPDA L ++  Y RDFV ELNKALAVDPRIEIC + + DG+
Sbjct: 161 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGI 220

Query: 181 TLCRRI 186
           T+CRRI
Sbjct: 221 TICRRI 226

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 219

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (340), Expect = 1e-40
 Identities = 70/186 (37%), Positives = 110/186 (59%), Gaps = 7/186 (3%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
            M + ++AQ  + L +LI AK  +++G FTGYS LA ALA+P DG+++  ++  +  E G
Sbjct: 41  SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELG 100

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
            P+ ++A   HKID R  PAL  LD+L+      GTFD   VDADK+N   Y++R ++L+
Sbjct: 101 RPLWRQAEAEHKIDLRLKPALETLDELL-AAGEAGTFDVAVVDADKENCSAYYERCLQLL 159

Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
           + GG++     LW G V+ PP  D+        + V+ LN+ +  D R+ I  + + DG+
Sbjct: 160 RPGGILAVLRVLWRGKVLQPPKGDVA------AECVRNLNERIRRDVRVYISLLPLGDGL 213

Query: 181 TLCRRI 186
           TL  +I
Sbjct: 214 TLAFKI 219

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (249), Expect = 3e-27
 Identities = 36/189 (19%), Positives = 73/189 (38%), Gaps = 16/189 (8%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
           M     + Q    +++  +    +E+G + GYS +  A  +    ++L +++  ++    
Sbjct: 38  MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAIT 97

Query: 61  LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRL--IE 118
             ++  AG+  K+    G +  L+ QL +      T D VF+D  KD Y+     L    
Sbjct: 98  QQMLNFAGLQDKVTILNGASQDLIPQLKKK-YDVDTLDMVFLDHWKDRYLPDTLLLEKCG 156

Query: 119 LVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIAD 178
           L++ G V+  DN +  G    P              +V+  +          +  + + D
Sbjct: 157 LLRKGTVLLADNVIVPG---TPDF----------LAYVRGSSSFECTHYSSYLEYMKVVD 203

Query: 179 GVTLCRRIG 187
           G+      G
Sbjct: 204 GLEKAIYQG 212

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} Length = 232

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 51.7 bits (123), Expect = 5e-09
 Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 24/191 (12%)

Query: 1   MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATA---LAIPDDGKILALDITKEHY 57
           M+  PD    +  +L  +  +  +E+GV+ G SL         +  D +++ +D      
Sbjct: 62  MLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRC 121

Query: 58  EKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKR-L 116
           +     ++   +               D    +         +F+D    N  N  K  +
Sbjct: 122 QIPASDMENITLHQGDCS---------DLTTFEHLREMAHPLIFIDNAHANTFNIMKWAV 172

Query: 117 IELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISI 176
             L++ G     ++ +      AP             +++      L++D         +
Sbjct: 173 DHLLEEGDYFIIEDMIPYWYRYAPQLFS---------EYLGAFRDVLSMDMLYANASSQL 223

Query: 177 ADGVTLCRRIG 187
             GV   RR+ 
Sbjct: 224 DRGVL--RRVA 232

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.6 bits (92), Expect = 8e-05
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 7/122 (5%)

Query: 5   PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPII 64
           P +A        +      +E G  +G   L+   A+   G++++ +   +H E     +
Sbjct: 82  PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNV 141

Query: 65  QKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGG 124
                    ++R      ++  L   E   G+ D   +D      V        L+  GG
Sbjct: 142 SGCYGQPPDNWR-----LVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVS--RLLVAGG 194

Query: 125 VI 126
           V+
Sbjct: 195 VL 196

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 21/128 (16%), Positives = 48/128 (37%), Gaps = 9/128 (7%)

Query: 5   PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPII 64
           P +      ++ +      +E G  +G   L  + A+   G++++ ++ K+H++      
Sbjct: 84  PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNY 143

Query: 65  QKAGVAHKIDFREGPA--LPLLDQLIQDEKYH---GTFDFVFVD-ADKDNYVNYHKRLIE 118
           +    + K+   E     +  + + I          TFD V +D  +    +        
Sbjct: 144 KHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTL---PVFYP 200

Query: 119 LVKVGGVI 126
            +K GGV 
Sbjct: 201 HLKHGGVC 208

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 18/123 (14%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 4   SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI 63
           S  +A +  M   L    + +E+GV +G        A+   G +  ++  +++ +K +  
Sbjct: 70  SEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDN 129

Query: 64  IQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVG 123
           + +      +          +   +          +  V AD  +  N+ +++  ++K G
Sbjct: 130 LSEFYDIGNVRTSRSDIADFISDQM----------YDAVIADIPDPWNHVQKIASMMKPG 179

Query: 124 GVI 126
            V 
Sbjct: 180 SVA 182

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	100.0
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	100.0
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.98
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.85
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.83
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.82
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.78
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.76
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.76
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.75
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.74
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.73
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.73
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.73
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.72
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.72
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.71
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.71
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.7
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.7
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.7
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.69
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.69
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.69
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.68
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.68
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.68
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.67
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.67
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.67
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.67
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.67
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.66
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.66
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.66
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.65
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.64
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.63
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.63
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.62
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.62
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.62
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.62
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.61
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.61
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.61
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.61
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.6
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.6
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.6
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.59
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.59
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	99.59
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	99.58
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.57
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.56
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.55
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.54
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.54
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.54
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.54
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.52
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	99.51
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.48
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.48
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.48
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.48
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.48
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.47
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.44
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.44
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.38
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.37
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.35
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.33
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.3
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.29
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.28
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	99.24
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.18
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.15
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.14
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.11
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	99.04
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.98
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.94
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.9
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.86
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.84
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.75
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.74
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.72
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.72
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.69
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.68
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.59
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.57
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.54
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.49
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.19
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.99
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.93
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.88
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.88
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.87
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.85
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.85
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.82
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.76
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.7
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.62
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.59
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.57
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.33
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.33
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.21
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.21
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.16
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.07
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.97
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.94
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.83
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.78
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.72
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.66
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.6
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.56
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.4
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.34
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.3
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.28
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.2
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.18
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.16
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.16
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	96.09
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.09
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	96.05
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	96.03
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.95
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	95.9
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	95.86
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.74
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	95.73
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.72
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.48
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.36
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	95.24
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.22
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	94.9
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	94.82
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.81
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.63
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	93.85
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	93.83
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.8
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.77
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	93.42
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.4
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.3
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.26
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.22
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	93.21
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	93.02
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.88
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	92.83
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	92.34
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	92.3
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	92.12
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	92.04
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.89
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	91.87
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	91.55
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	91.5
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	91.49
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	91.47
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	91.32
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	91.3
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	91.09
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	90.92
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	90.88
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	90.8
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	90.55
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	90.54
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	90.47
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.47
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	90.44
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.42
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	90.32
d1yioa2	128	Response regulatory protein StyR, N-terminal domai	90.27
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	90.23
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	90.19
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	90.16
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	89.87
d1a04a2	138	Nitrate/nitrite response regulator (NarL), receive	89.76
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	89.72
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	89.69
d1a2oa1	140	Methylesterase CheB, N-terminal domain {Salmonella	89.6
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	89.58
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	89.53
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	89.46
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	89.21
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	89.08
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	88.9
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	88.84
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	88.83
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	88.75
d1w25a1	139	Response regulator PleD, receiver domain {Caulobac	88.7
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	88.67
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	88.63
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	88.62
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	88.55
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	88.34
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.27
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	88.19
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	87.81
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	87.79
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	87.71
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	87.61
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	87.57
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	87.41
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	87.33
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	87.16
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	87.04
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	86.93
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	86.49
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	86.45
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	86.13
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	86.1
d1zgza1	120	TorCAD operon transcriptional regulator TorD, N-te	86.03
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	86.0
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	85.97
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	85.89
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	85.73
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	85.36
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	85.35
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	85.28
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	85.2
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	85.03
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	84.89
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.89
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	84.87
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	84.6
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	84.17
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	83.9
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	83.87
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	83.85
d1qo0d_	189	Positive regulator of the amidase operon AmiR {Pse	83.83
d1s8na_	190	Probable two-component system transcriptional regu	83.76
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	83.5
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	83.03
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	82.92
d1i3ca_	144	Response regulator for cyanobacterial phytochrome	82.83
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	82.46
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	82.35
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	82.21
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	82.08
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.04
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	81.99
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	81.67
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	81.35
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	81.34
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	81.31
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	81.17
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	80.96
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	80.64
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	80.14
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	80.13

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=4.6e-41  Score=249.36  Aligned_cols=186  Identities=79%  Similarity=1.283  Sum_probs=174.9

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |+++|+++++|+.|++..+|++||||||++|+++++++++++++++++++|.+++..+.|++++++.|..++++++.+++
T Consensus        41 m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a  120 (227)
T d1susa1          41 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  120 (227)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHH
Confidence            78999999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN  160 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+.+.....++||+||+|+++..|..+++.+.++|+|||+|++||++|.|.+..|...+..++.+.....+++|+
T Consensus       121 ~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n  200 (227)
T d1susa1         121 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELN  200 (227)
T ss_dssp             HHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHH
Confidence            99999886543224689999999999999999999999999999999999999999999888777777788888999999


Q ss_pred             HHHhcCCCeeEEEeecCCeeEEEEEc
Q 029836          161 KALAVDPRIEICQISIADGVTLCRRI  186 (187)
Q Consensus       161 ~~~~~~~~~~~~~~p~~~G~~i~~k~  186 (187)
                      +.+..+|+++++++|+|+|+.|++|.
T Consensus       201 ~~i~~d~r~~~~llPigDGl~i~~K~  226 (227)
T d1susa1         201 KALAVDPRIEICMLPVGDGITICRRI  226 (227)
T ss_dssp             HHHHHCTTBCCEEECSTTCEEEECBC
T ss_pred             HHHhcCCCEEEEEeecCCeeEEEEEC
Confidence            99999999999999999999999985

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-39  Score=238.76  Aligned_cols=179  Identities=39%  Similarity=0.668  Sum_probs=166.4

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |+++|+++++|+.|++..++++|||||||+|+++++++++++.+++++++|.+++..+.|+++++..|+.++++++.|++
T Consensus        41 ~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda  120 (219)
T d2avda1          41 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  120 (219)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeeh
Confidence            68999999999999999999999999999999999999999878999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN  160 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+.... ..++||+||+|++++.+..+++.+.++|+|||+|++||++|.|.+..|...      +.....+++|+
T Consensus       121 ~e~l~~~~~~~-~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~------d~~~~~ir~~~  193 (219)
T d2avda1         121 LETLDELLAAG-EAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKG------DVAAECVRNLN  193 (219)
T ss_dssp             HHHHHHHHHTT-CTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTT------CHHHHHHHHHH
T ss_pred             hhcchhhhhhc-ccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccC------CHHHHHHHHHH
Confidence            99888765443 146899999999999999999999999999999999999999999887654      35667899999


Q ss_pred             HHHhcCCCeeEEEeecCCeeEEEEEc
Q 029836          161 KALAVDPRIEICQISIADGVTLCRRI  186 (187)
Q Consensus       161 ~~~~~~~~~~~~~~p~~~G~~i~~k~  186 (187)
                      +.+++++++..+++|+++|+.|++|.
T Consensus       194 ~~i~~d~r~~~~llPigdGl~ia~Kl  219 (219)
T d2avda1         194 ERIRRDVRVYISLLPLGDGLTLAFKI  219 (219)
T ss_dssp             HHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHhCCCEEEEEeecCCeeEEEEeC
Confidence            99999999999999999999999984

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=2.5e-31  Score=195.63  Aligned_cols=166  Identities=20%  Similarity=0.333  Sum_probs=144.3

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      |+++|+++++|+.++...+|++|||||||+|+++++++++++++++++++|.++++++.|+++++..|+.++++++.|++
T Consensus        38 m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~  117 (214)
T d2cl5a1          38 MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGAS  117 (214)
T ss_dssp             CSCHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccc
Confidence            78999999999999999999999999999999999999999878999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCCcccHHH--HHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHH
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNY--HKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQE  158 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~--~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (187)
                      .+.++.+.+.. ..++||+||+|+++..+...  +..++++|+|||+|++||++|.|.                    ..
T Consensus       118 ~e~l~~l~~~~-~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~--------------------~~  176 (214)
T d2cl5a1         118 QDLIPQLKKKY-DVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGT--------------------PD  176 (214)
T ss_dssp             HHHGGGHHHHS-CCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCCC--------------------HH
T ss_pred             cccccchhhcc-cccccceeeecccccccccHHHHHHHhCccCCCcEEEEeCcCCCCC--------------------hH
Confidence            99888775432 13589999999998877664  556678999999999999999763                    23


Q ss_pred             HHHHHhcCCCeeEEE-------eecCCeeEEEEEcC
Q 029836          159 LNKALAVDPRIEICQ-------ISIADGVTLCRRIG  187 (187)
Q Consensus       159 ~~~~~~~~~~~~~~~-------~p~~~G~~i~~k~~  187 (187)
                      +.++++..+.+....       .|.++|+.++..+|
T Consensus       177 ~~~~vr~~~~~~~~~~~~~~~~~~~~dgl~~s~~~g  212 (214)
T d2cl5a1         177 FLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQG  212 (214)
T ss_dssp             HHHHHHHCTTEEEEEEEEECTTSSSEEEEEEEEECC
T ss_pred             HHHHHhccCceeehhhhhcceecccCCceEEEEecC
Confidence            455677777776554       57899999999887

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.85  E-value=1.1e-20  Score=135.68  Aligned_cols=119  Identities=18%  Similarity=0.169  Sum_probs=105.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      ++.+...++-..+...+..+|||+|||+|..++.++..   ..+|+++|+++++++.|++|++++++.++++++++|+.+
T Consensus        17 t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~   93 (186)
T d1l3ia_          17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE   93 (186)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred             ChHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhh
Confidence            56677777777788888999999999999999999864   469999999999999999999999998899999999977


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+..       .+.||.|+++.......++++.+.+.|||||.+++...
T Consensus        94 ~~~~-------~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_          94 ALCK-------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             HHTT-------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cccc-------cCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEee
Confidence            6542       47899999999888888999999999999999987643

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.7e-20  Score=138.98  Aligned_cols=122  Identities=13%  Similarity=0.202  Sum_probs=104.4

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +++....+...+.+.++++|||||||+|..+..+++..  +.+|++||+++.+++.|+++.+..|+.++++++++|+.+.
T Consensus        18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~   95 (245)
T d1nkva_          18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   95 (245)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence            45666667777777888999999999999999998875  4799999999999999999999999988999999999875


Q ss_pred             HHHHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           84 LDQLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      .+        +++||+|++-..   ..+...+++++.+.|||||.+++.+..+..
T Consensus        96 ~~--------~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~  142 (245)
T d1nkva_          96 VA--------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQ  142 (245)
T ss_dssp             CC--------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETT
T ss_pred             cc--------cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccC
Confidence            33        578999997654   456789999999999999999998876544

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=6.9e-19  Score=131.62  Aligned_cols=149  Identities=18%  Similarity=0.200  Sum_probs=112.2

Q ss_pred             CHHHHHHHHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLI-NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~-~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      .|.+.-.++.|.... ++++|||+|||+|..++.+++.   +.+|+++|+++.+++.|++|.+.+++  ++++++++..+
T Consensus       104 H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~~  178 (254)
T d2nxca1         104 HETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLEA  178 (254)
T ss_dssp             SHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHHH
T ss_pred             cchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCC--ceeEEeccccc
Confidence            355666777776654 5679999999999999987764   46899999999999999999999988  46788998876


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHH
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKA  162 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (187)
                      .++        .++||+|++.........+++.+.+.|||||.+++++++..                    ....+.+.
T Consensus       179 ~~~--------~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil~~--------------------~~~~v~~~  230 (254)
T d2nxca1         179 ALP--------FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKD--------------------RAPLVREA  230 (254)
T ss_dssp             HGG--------GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGG--------------------GHHHHHHH
T ss_pred             ccc--------ccccchhhhccccccHHHHHHHHHHhcCCCcEEEEEecchh--------------------hHHHHHHH
Confidence            543        46899999887666677888899999999999998765421                    11223333


Q ss_pred             HhcCCCee-EEEeecCCeeEEEEEc
Q 029836          163 LAVDPRIE-ICQISIADGVTLCRRI  186 (187)
Q Consensus       163 ~~~~~~~~-~~~~p~~~G~~i~~k~  186 (187)
                      +... ++. ......+++++++.||
T Consensus       231 ~~~~-Gf~~~~~~~~~~Wv~l~~~r  254 (254)
T d2nxca1         231 MAGA-GFRPLEEAAEGEWVLLAYGR  254 (254)
T ss_dssp             HHHT-TCEEEEEEEETTEEEEEEEC
T ss_pred             HHHC-CCEEEEEEEECCEEEEEEeC
Confidence            3333 443 3344578889888775

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.78  E-value=8.3e-19  Score=129.29  Aligned_cols=114  Identities=17%  Similarity=0.237  Sum_probs=93.3

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      ..++++. +.+.++++|||||||+|..+..+++.   ..+|+++|+++.+++.|+++++..+. ++++++++|+.+. + 
T Consensus         4 ~~~ll~~-~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l-~-   76 (231)
T d1vl5a_           4 LAKLMQI-AALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQM-P-   76 (231)
T ss_dssp             HHHHHHH-HTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CC-C-
T ss_pred             HHHHHHh-cCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhccccccc-ccccccccccccc-c-
Confidence            3445544 56677899999999999999999876   46899999999999999999999887 6899999999764 2 


Q ss_pred             HhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           87 LIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +.     +++||+|++...   ..+...++.++.++|||||++++.+..
T Consensus        77 ~~-----~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~  120 (231)
T d1vl5a_          77 FT-----DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  120 (231)
T ss_dssp             SC-----TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cc-----ccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            11     579999998765   346788999999999999999986543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=2.4e-18  Score=127.31  Aligned_cols=115  Identities=18%  Similarity=0.226  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      ....++-..+...++.+|||||||+|..+..+++.   ..+|++||+|+.+++.|++++...+. +++.++++|+.+. +
T Consensus         3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~---~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~-~   77 (234)
T d1xxla_           3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY---VQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESL-P   77 (234)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBC-C
T ss_pred             hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh---CCeEEEEeCChhhhhhhhhhhccccc-ccccccccccccc-c
Confidence            44567777778888999999999999999999976   36899999999999999999999887 6899999998763 2


Q ss_pred             HHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           86 QLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                       +.     +++||+|++...   ..+...+++++.++|||||++++.+.
T Consensus        78 -~~-----~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~  120 (234)
T d1xxla_          78 -FP-----DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  120 (234)
T ss_dssp             -SC-----TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -cc-----ccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence             11     679999998765   34678999999999999999988654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=3.1e-18  Score=125.16  Aligned_cols=114  Identities=18%  Similarity=0.315  Sum_probs=93.4

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +|.....+-.++...++.+|||||||+|+++..+++.+++.++|+++|+++++++.|+++++..+. .++.++++|+.+.
T Consensus        60 ~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~~~  138 (213)
T d1dl5a1          60 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYG  138 (213)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGC
T ss_pred             cchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCchHHc
Confidence            345444455556678889999999999999999998877678999999999999999999999888 6888999998765


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ++.       .++||+|++.+...+.++   .+.+.|||||.|++
T Consensus       139 ~~~-------~~~fD~I~~~~~~~~~p~---~l~~~LkpGG~lv~  173 (213)
T d1dl5a1         139 VPE-------FSPYDVIFVTVGVDEVPE---TWFTQLKEGGRVIV  173 (213)
T ss_dssp             CGG-------GCCEEEEEECSBBSCCCH---HHHHHEEEEEEEEE
T ss_pred             ccc-------ccchhhhhhhccHHHhHH---HHHHhcCCCcEEEE
Confidence            443       468999999887555433   45678999999987

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.75  E-value=1.1e-18  Score=130.14  Aligned_cols=109  Identities=15%  Similarity=0.227  Sum_probs=91.1

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh
Q 029836           10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ   89 (187)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~   89 (187)
                      ++-..+...++.+|||+|||+|..+.++++.+++.++|+++|.++++++.|++++++.+...++++.++|..+.++    
T Consensus        76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~----  151 (250)
T d1yb2a1          76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS----  151 (250)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC----
T ss_pred             HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc----
Confidence            3334455678899999999999999999998766799999999999999999999998777899999999877643    


Q ss_pred             cccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           90 DEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                          ++.||.|++|..  +...+++.+.+.|||||++++
T Consensus       152 ----~~~fD~V~ld~p--~p~~~l~~~~~~LKpGG~lv~  184 (250)
T d1yb2a1         152 ----DQMYDAVIADIP--DPWNHVQKIASMMKPGSVATF  184 (250)
T ss_dssp             ----SCCEEEEEECCS--CGGGSHHHHHHTEEEEEEEEE
T ss_pred             ----cceeeeeeecCC--chHHHHHHHHHhcCCCceEEE
Confidence                568999999864  334668899999999999996

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=8e-18  Score=126.64  Aligned_cols=116  Identities=22%  Similarity=0.330  Sum_probs=100.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +.|.-..++-.++...++++|||+|||+|+.+.++++.+++.++|+++|.++++++.|+++++..++.+++.+..+|...
T Consensus        87 iypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~  166 (266)
T d1o54a_          87 VYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE  166 (266)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred             cchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc
Confidence            45666777888888899999999999999999999998876899999999999999999999999998899999998754


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+.        ...+|.|++|..  +...+++.+.+.|||||.+++
T Consensus       167 ~~~--------~~~~D~V~~d~p--~p~~~l~~~~~~LKpGG~lv~  202 (266)
T d1o54a_         167 GFD--------EKDVDALFLDVP--DPWNYIDKCWEALKGGGRFAT  202 (266)
T ss_dssp             CCS--------CCSEEEEEECCS--CGGGTHHHHHHHEEEEEEEEE
T ss_pred             ccc--------ccceeeeEecCC--CHHHHHHHHHhhcCCCCEEEE
Confidence            332        568999999864  445678899999999999986

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.73  E-value=6.1e-18  Score=128.50  Aligned_cols=109  Identities=16%  Similarity=0.239  Sum_probs=92.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      +.++.+|||||||+|..+..+++..  +.+|+++|+++.+++.|+++.+..|+.+++++.++|+.+. + +     ..++
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-~-~-----~~~s  135 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P-C-----EDNS  135 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S-S-----CTTC
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccc-c-c-----cccc
Confidence            3467899999999999999999864  4799999999999999999999999989999999999764 2 1     1578


Q ss_pred             eeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           97 FDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        97 ~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      ||+|++...   ..+...++.++.++|||||.+++.+....
T Consensus       136 fD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~  176 (282)
T d2o57a1         136 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE  176 (282)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             cchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecC
Confidence            999997654   35678899999999999999999776543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.73  E-value=1.6e-17  Score=115.13  Aligned_cols=114  Identities=16%  Similarity=0.172  Sum_probs=94.2

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836            8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      +.++..|-...++++|||+|||+|..+++++...  ..+|+++|.++++++.++++++..+..++++++++|+..+++..
T Consensus         3 e~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rg--a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~   80 (152)
T d2esra1           3 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL   80 (152)
T ss_dssp             HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB
T ss_pred             HHHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhC--cceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc
Confidence            3455666556688999999999999999887652  36999999999999999999999999889999999998887654


Q ss_pred             hhcccCCCceeEEEEcCC--CcccHHHHHHHH--hcccCCeEEEEe
Q 029836           88 IQDEKYHGTFDFVFVDAD--KDNYVNYHKRLI--ELVKVGGVIGYD  129 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~--~~L~~gG~lv~~  129 (187)
                            .++||+||+|++  ...+...++.+.  ++|+++|++++.
T Consensus        81 ------~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          81 ------TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             ------CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ------ccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence                  679999999987  234455666554  579999999985

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=9.8e-18  Score=125.64  Aligned_cols=116  Identities=16%  Similarity=0.161  Sum_probs=98.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc--CCCCceEEEeCCc
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA--GVAHKIDFREGPA   80 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~--~~~~~i~~~~~d~   80 (187)
                      +.|.-..++-.++...++.+|||+|||+|..+.+++..+.+.++|+++|+++++++.|++|++..  +...++++.++|.
T Consensus        80 iypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~  159 (264)
T d1i9ga_          80 IYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL  159 (264)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred             cchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccc
Confidence            45667777888888899999999999999999999999877899999999999999999999975  3457999999998


Q ss_pred             hHH-HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           81 LPL-LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        81 ~~~-l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+. ++        +++||.||+|.+  +...+++.+.+.|||||.+++
T Consensus       160 ~~~~~~--------~~~fDaV~ldlp--~P~~~l~~~~~~LkpGG~lv~  198 (264)
T d1i9ga_         160 ADSELP--------DGSVDRAVLDML--APWEVLDAVSRLLVAGGVLMV  198 (264)
T ss_dssp             GGCCCC--------TTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEE
T ss_pred             cccccc--------CCCcceEEEecC--CHHHHHHHHHhccCCCCEEEE
Confidence            753 22        578999999864  334678889999999999986

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=2.3e-17  Score=122.87  Aligned_cols=109  Identities=21%  Similarity=0.300  Sum_probs=87.6

Q ss_pred             HHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            9 QFFSMLLKL---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         9 ~~l~~l~~~---~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      .++..+...   .++++|||||||+|..+..+++.   +.+|+|||+++.+++.|+++++..+.  ++++.++|+.++..
T Consensus        28 ~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~  102 (251)
T d1wzna1          28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF  102 (251)
T ss_dssp             HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC
T ss_pred             HHHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc--cchheehhhhhccc
Confidence            345555432   34578999999999999999985   46899999999999999999998765  79999999976521


Q ss_pred             HHhhcccCCCceeEEEEcCC------CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           86 QLIQDEKYHGTFDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                              .++||+|++-..      .++...++..+.+.|||||+++++-
T Consensus       103 --------~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         103 --------KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             --------CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence                    468999997542      1345678999999999999999864

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.72  E-value=9.9e-18  Score=127.37  Aligned_cols=109  Identities=20%  Similarity=0.281  Sum_probs=92.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...+|.+|||||||+|..+..+++.++.+.+|+++|+++.+++.|+++++..+.  ++++.++|+.+. + .      .+
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~-~-~------~~   93 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI-E-L------ND   93 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTC-C-C------SS
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccc-c-c------cC
Confidence            356789999999999999999998887678999999999999999999988765  799999998754 1 1      46


Q ss_pred             ceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           96 TFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        96 ~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      +||+|++...   ..+...+++.+.+.|||||.+++.+..|.
T Consensus        94 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~  135 (281)
T d2gh1a1          94 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWI  135 (281)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHH
T ss_pred             CceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCcc
Confidence            8999998865   34567899999999999999998776553

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.71  E-value=2.2e-17  Score=122.87  Aligned_cols=109  Identities=18%  Similarity=0.195  Sum_probs=87.3

Q ss_pred             HHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836            8 AQFFSMLLKL--INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD   85 (187)
Q Consensus         8 ~~~l~~l~~~--~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~   85 (187)
                      .+++..++..  .++++|||+|||+|..+..+++.   +.+++|+|+|+.+++.|+++.+..+.  +++++++|+.++..
T Consensus        24 ~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~   98 (246)
T d1y8ca_          24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI   98 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc--cceeeccchhhhcc
Confidence            4445454433  34679999999999999999976   46899999999999999999988775  79999999976521


Q ss_pred             HHhhcccCCCceeEEEEcCC-------CcccHHHHHHHHhcccCCeEEEEe
Q 029836           86 QLIQDEKYHGTFDFVFVDAD-------KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                              .++||+|++-..       .++...+++.+.++|+|||.++++
T Consensus        99 --------~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          99 --------NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             --------SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             --------cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence                    568999997432       234567899999999999999974

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.9e-17  Score=120.77  Aligned_cols=112  Identities=19%  Similarity=0.275  Sum_probs=89.6

Q ss_pred             HHHHHHHHH-hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC----CceEEEeCCch
Q 029836            7 EAQFFSMLL-KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA----HKIDFREGPAL   81 (187)
Q Consensus         7 ~~~~l~~l~-~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~----~~i~~~~~d~~   81 (187)
                      ...+++.|. ...++.+|||||||+|+.+..+++...+.++|+++|+++++++.|++++++.+..    .+++++.+|..
T Consensus        63 ~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~  142 (224)
T d1i1na_          63 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR  142 (224)
T ss_dssp             HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred             HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc
Confidence            345555544 3456789999999999999999987766789999999999999999999987653    57899999987


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ...+.       .++||.|++.+.....+   +.+.+.|||||.||+
T Consensus       143 ~~~~~-------~~~fD~I~~~~~~~~ip---~~l~~~LkpGG~LV~  179 (224)
T d1i1na_         143 MGYAE-------EAPYDAIHVGAAAPVVP---QALIDQLKPGGRLIL  179 (224)
T ss_dssp             GCCGG-------GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEE
T ss_pred             cccch-------hhhhhhhhhhcchhhcC---HHHHhhcCCCcEEEE
Confidence            65443       46899999988755543   346679999999987

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.70  E-value=3.4e-17  Score=117.91  Aligned_cols=105  Identities=12%  Similarity=0.047  Sum_probs=86.6

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEEEeCCchHHHHHHhhcc
Q 029836           13 MLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPLLDQLIQDE   91 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~   91 (187)
                      ..+...++++|||+|||+|..+..++..   ..+++++|+++.+++.++++++.+++. .++++.++|..+.++      
T Consensus        46 ~~l~~~~~~~VLDiGcG~G~~~~~la~~---~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~------  116 (194)
T d1dusa_          46 ENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK------  116 (194)
T ss_dssp             HHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT------
T ss_pred             HhCCcCCCCeEEEEeecCChhHHHHHhh---ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc------
Confidence            3334567889999999999999998876   358999999999999999999998885 368999999876443      


Q ss_pred             cCCCceeEEEEcCCCc----ccHHHHHHHHhcccCCeEEEE
Q 029836           92 KYHGTFDFVFVDADKD----NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~----~~~~~~~~~~~~L~~gG~lv~  128 (187)
                        +++||+|+++.+..    ....+++.+.++|+|||.+++
T Consensus       117 --~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_         117 --DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             --TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             --cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence              57899999987622    235678899999999998875

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.1e-17  Score=125.73  Aligned_cols=119  Identities=18%  Similarity=0.212  Sum_probs=94.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc----------CCCCc
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA----------GVAHK   72 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~----------~~~~~   72 (187)
                      +-|.-..++-.++...++.+|||+|||+|+.+.++++.+.++++|+++|+++++++.|++|++..          +...+
T Consensus        82 iypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~n  161 (324)
T d2b25a1          82 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  161 (324)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             cccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence            34556667777788899999999999999999999998877899999999999999999999964          33478


Q ss_pred             eEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           73 IDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        73 i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +++.++|..+....+.     ...||.||+|.+.  ...+++.+.+.|||||.+++
T Consensus       162 v~~~~~di~~~~~~~~-----~~~fD~V~LD~p~--P~~~l~~~~~~LKpGG~lv~  210 (324)
T d2b25a1         162 VDFIHKDISGATEDIK-----SLTFDAVALDMLN--PHVTLPVFYPHLKHGGVCAV  210 (324)
T ss_dssp             EEEEESCTTCCC------------EEEEEECSSS--TTTTHHHHGGGEEEEEEEEE
T ss_pred             eeEEecchhhcccccC-----CCCcceEeecCcC--HHHHHHHHHHhccCCCEEEE
Confidence            9999999876544432     4689999998642  22468889999999999985

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.2e-17  Score=121.01  Aligned_cols=110  Identities=17%  Similarity=0.168  Sum_probs=88.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++++|||||||+|.++.++++..  ..++++||+++.+++.|+++.+..+  .+++++.+++......+.     .++|
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~f  122 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLP-----DGHF  122 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSC-----TTCE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccc-----cccc
Confidence            356799999999999999999763  3689999999999999999987754  478888898877655542     5799


Q ss_pred             eEEEEcCCC--------cccHHHHHHHHhcccCCeEEEEeCcCCCcc
Q 029836           98 DFVFVDADK--------DNYVNYHKRLIELVKVGGVIGYDNTLWGGS  136 (187)
Q Consensus        98 D~v~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~  136 (187)
                      |.|++|...        .+...+++.+.++|||||++++.+..+.+.
T Consensus       123 D~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~  169 (229)
T d1zx0a1         123 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGE  169 (229)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHH
T ss_pred             cceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcch
Confidence            999998651        224568899999999999999876655443

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.69  E-value=1.1e-16  Score=115.36  Aligned_cols=106  Identities=16%  Similarity=0.144  Sum_probs=89.3

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      +...++.+|||||||+|..+.++++.   +.+|+++|+++.+++.++++.+..++ +++++...|..+..+        +
T Consensus        26 ~~~~~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~--------~   93 (198)
T d2i6ga1          26 AKVVAPGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTF--------D   93 (198)
T ss_dssp             HTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCC--------C
T ss_pred             cccCCCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccc--------c
Confidence            35567889999999999999999986   57899999999999999999999888 579999999865533        5


Q ss_pred             CceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           95 GTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        95 ~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ++||+|++...     ......+++.+.+.|+|||++++....
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1          94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             CCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             ccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            78999998764     344678999999999999999886543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.69  E-value=2.3e-16  Score=115.85  Aligned_cols=106  Identities=13%  Similarity=0.182  Sum_probs=88.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .+..+|||+|||+|..+..+++... ++.+|+++|+|+.+++.|+++++..+...++++..+|..+. +        .+.
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~-~--------~~~  108 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-E--------IKN  108 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC-C--------CCS
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc-c--------ccc
Confidence            3556999999999999999998653 46899999999999999999999888878899999888644 1        457


Q ss_pred             eeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           97 FDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        97 ~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|+|++...     .++...+++++.+.|+|||.+++.+..
T Consensus       109 ~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         109 ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             EEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence            888887643     356778999999999999999987654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.69  E-value=5.6e-17  Score=116.20  Aligned_cols=122  Identities=12%  Similarity=0.044  Sum_probs=94.2

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC-----------C
Q 029836            2 MTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV-----------A   70 (187)
Q Consensus         2 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~-----------~   70 (187)
                      +++|...+++..| ...++.+|||+|||+|..+.+|++.   +.+|+++|+|+.+++.|++..+..+.           .
T Consensus         4 ~~~~~~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~   79 (201)
T d1pjza_           4 EVNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAA   79 (201)
T ss_dssp             SSTHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEEC
T ss_pred             hHHHHHHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccc
Confidence            4567777777776 4667889999999999999999986   68999999999999999998865432           1


Q ss_pred             CceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           71 HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        71 ~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .++++.++|..+..+..      ...||+|+....     ......+++.+.+.|||||.+++....+
T Consensus        80 ~~~~~~~~d~~~l~~~~------~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~  141 (201)
T d1pjza_          80 PGIEIWCGDFFALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY  141 (201)
T ss_dssp             SSSEEEEECCSSSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred             cccceeccccccccccc------ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence            34678888887654432      358999987654     2345678999999999999887654443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.68  E-value=4.6e-16  Score=112.58  Aligned_cols=103  Identities=17%  Similarity=0.285  Sum_probs=87.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ....|||||||+|.++..+|+..| +..++|+|+++.++..|.++.++.++ +|+.++++|+..++..+.     ++++|
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~-----~~~~d  101 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFE-----PGEVK  101 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCC-----TTSCC
T ss_pred             CCceEEEEEecCcHHHHHHHHhCC-CCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhcccC-----chhhh
Confidence            345799999999999999999987 79999999999999999999999998 689999999987765443     56889


Q ss_pred             EEEEcCC---Cc-c-------cHHHHHHHHhcccCCeEEEE
Q 029836           99 FVFVDAD---KD-N-------YVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        99 ~v~~d~~---~~-~-------~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|++..+   .. .       ...+++.+.+.|||||.|.+
T Consensus       102 ~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i  142 (204)
T d2fcaa1         102 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF  142 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred             ccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEE
Confidence            8886543   11 1       26899999999999999976

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.68  E-value=4.6e-16  Score=110.74  Aligned_cols=117  Identities=16%  Similarity=0.193  Sum_probs=96.9

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836            8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      ..++..|.....+.+|||++||+|..+++.+...  ..+|++||.++.+++.+++|++..+...+++++++|+.+++..+
T Consensus        30 ealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srG--a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~  107 (182)
T d2fhpa1          30 ESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQF  107 (182)
T ss_dssp             HHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEcccccccccceeeecc--hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhh
Confidence            4455555455678999999999999999988753  46899999999999999999999998889999999999988776


Q ss_pred             hhcccCCCceeEEEEcCC--CcccHHHHHHHH--hcccCCeEEEEe
Q 029836           88 IQDEKYHGTFDFVFVDAD--KDNYVNYHKRLI--ELVKVGGVIGYD  129 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~--~~L~~gG~lv~~  129 (187)
                      ...   ..+||+||+|++  ...+...++.+.  .+|+++|++++.
T Consensus       108 ~~~---~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         108 YEE---KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             HHT---TCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ccc---CCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            433   458999999997  455677788775  479999999874

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=1.8e-16  Score=120.09  Aligned_cols=116  Identities=12%  Similarity=0.167  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            6 DEAQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         6 ~~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      .+.+.+..++.   +.++.+|||||||.|..+.++++..  +++|+++|+|++.++.|++.+++.++..++.+...|..+
T Consensus        36 AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~  113 (280)
T d2fk8a1          36 AQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED  113 (280)
T ss_dssp             HHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh
Confidence            34455666664   4467899999999999999998875  479999999999999999999999998889998888754


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +          .++||.|+.-..     ...+..+|+.+.++|||||.+++..+..
T Consensus       114 ~----------~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~  159 (280)
T d2fk8a1         114 F----------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS  159 (280)
T ss_dssp             C----------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             h----------ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeec
Confidence            3          568999987654     3456889999999999999999976543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=2.8e-16  Score=119.21  Aligned_cols=116  Identities=10%  Similarity=0.127  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            5 PDEAQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         5 ~~~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      ..+.+.+..++.   +.++.+|||||||.|..++++++..  +++|+++++|++.++.|++.+.+.++.+++++..+|..
T Consensus        45 eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~  122 (285)
T d1kpga_          45 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE  122 (285)
T ss_dssp             HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhh
Confidence            344555555554   5567899999999999999999886  48999999999999999999999999999999999985


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +.          +++||.|+.-..     ...+..+|+.+.++|||||.++++++.
T Consensus       123 ~~----------~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         123 QF----------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             GC----------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             cc----------cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence            43          568999987654     345689999999999999999988765

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=2.6e-16  Score=121.31  Aligned_cols=112  Identities=21%  Similarity=0.358  Sum_probs=93.4

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhccc
Q 029836           13 MLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      .+....++++|||++||+|..++.++..   ..+|+++|+++.+++.+++|++.+|+ .+++++++|+.+++..+...  
T Consensus       139 ~~~~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~--  212 (318)
T d1wxxa2         139 LYMERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEKE--  212 (318)
T ss_dssp             HHGGGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHT--
T ss_pred             HHHHHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHhh--
Confidence            3445567889999999999999988754   57999999999999999999999998 68999999999987766443  


Q ss_pred             CCCceeEEEEcCCC------------cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           93 YHGTFDFVFVDADK------------DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        93 ~~~~~D~v~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                       .++||+|++|++.            ..+.+++..+.++|+|||+|++..+
T Consensus       213 -~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         213 -GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             -TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             -hcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence             5789999999861            2245677788899999999998554

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=2.2e-16  Score=115.39  Aligned_cols=102  Identities=16%  Similarity=0.130  Sum_probs=83.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+..+|||||||+|..+..+++.   +.+|+|+|+|+.+++.|+++....+.  ++.++.+|+.+. +.      .+++|
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l-~~------~~~~f  103 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKL-SF------EDKTF  103 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSC-CS------CTTCE
T ss_pred             CCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc--cccccccccccc-cc------cCcCc
Confidence            45579999999999999999975   57999999999999999999988764  678888888764 21      15799


Q ss_pred             eEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           98 DFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        98 D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |+|++-..-     .+...+++.+.++|||||.++++..
T Consensus       104 D~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         104 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            999987552     2456789999999999999988654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=3.7e-16  Score=118.84  Aligned_cols=117  Identities=12%  Similarity=0.165  Sum_probs=96.4

Q ss_pred             HHHHHHHHHH---hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            6 DEAQFFSMLL---KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         6 ~~~~~l~~l~---~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      .+.+.+..++   .+.++.+|||||||.|..+.++++..  +++|+++++|++.++.+++..+..++..++++...|...
T Consensus        45 Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~  122 (291)
T d1kpia_          45 AQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE  122 (291)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc
Confidence            3444555554   45567899999999999999999876  479999999999999999999999999999999988742


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCC------------cccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADK------------DNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      .          +++||.|+.-..-            +.+..+|+.+.++|||||.++++.+...
T Consensus       123 ~----------~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~  176 (291)
T d1kpia_         123 F----------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  176 (291)
T ss_dssp             C----------CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred             c----------ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence            1          5789999976541            3468999999999999999999877543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=3.2e-16  Score=121.09  Aligned_cols=115  Identities=22%  Similarity=0.328  Sum_probs=95.1

Q ss_pred             HHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhc
Q 029836           12 SMLLKLI-NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD   90 (187)
Q Consensus        12 ~~l~~~~-~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~   90 (187)
                      ..+.... +.++|||+|||+|..+++++...  ..+|+++|+++.+++.+++|++.+|+.++++++++|+.+.+..+...
T Consensus       137 ~~~~~~~~~g~~VLDl~~g~G~~si~~a~~g--a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~  214 (324)
T d2as0a2         137 LALEKWVQPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK  214 (324)
T ss_dssp             HHHGGGCCTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT
T ss_pred             HHHHhhcCCCCeeecccCcccchhhhhhhcC--CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhc
Confidence            3344443 57899999999999999988762  36999999999999999999999999889999999999887665443


Q ss_pred             ccCCCceeEEEEcCCC------------cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           91 EKYHGTFDFVFVDADK------------DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                         ..+||+|++|++.            ..|..++..+.++|+|||+|++..+
T Consensus       215 ---~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~  264 (324)
T d2as0a2         215 ---GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  264 (324)
T ss_dssp             ---TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             ---cCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence               5689999999872            1356678888999999999997654

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=6.2e-16  Score=116.37  Aligned_cols=116  Identities=18%  Similarity=0.241  Sum_probs=96.3

Q ss_pred             CHHHHHHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            4 SPDEAQFFSMLLKLI--NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~--~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      .|++..++...+...  ++.+|||+|||+|..++.++...| +.+|+++|+++.+++.|++|++.+++ .+++++++|..
T Consensus        91 RpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~  168 (274)
T d2b3ta1          91 RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWF  168 (274)
T ss_dssp             CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTT
T ss_pred             ccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCc-ccceeeecccc
Confidence            477888887766544  356899999999999999999887 79999999999999999999999998 68999999987


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCCC--c--------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDADK--D--------------------------NYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~~--~--------------------------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.++        +++||+|+.+++.  .                          .+..+++.+.++|++||.+++.
T Consensus       169 ~~~~--------~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE  236 (274)
T d2b3ta1         169 SALA--------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  236 (274)
T ss_dssp             GGGT--------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cccC--------CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence            6554        4689999998761  1                          1245677778899999999973

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.66  E-value=3.7e-16  Score=113.79  Aligned_cols=113  Identities=19%  Similarity=0.295  Sum_probs=92.5

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      ++|.....+-.++...+..+|||||||+|+.+..+++..  +++|+++|.+++..+.|++++++.+. .|++++++|..+
T Consensus        62 s~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~  138 (215)
T d1jg1a_          62 SAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSK  138 (215)
T ss_dssp             CCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGG
T ss_pred             hhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECcccc
Confidence            455655555566678889999999999999999988764  36799999999999999999999998 799999999976


Q ss_pred             HHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .++.       .++||.|++.+.....+.   .+...|++||.+++
T Consensus       139 g~~~-------~~pfD~Iiv~~a~~~ip~---~l~~qL~~gGrLv~  174 (215)
T d1jg1a_         139 GFPP-------KAPYDVIIVTAGAPKIPE---PLIEQLKIGGKLII  174 (215)
T ss_dssp             CCGG-------GCCEEEEEECSBBSSCCH---HHHHTEEEEEEEEE
T ss_pred             CCcc-------cCcceeEEeecccccCCH---HHHHhcCCCCEEEE
Confidence            5543       468999999887555443   34568999999986

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.66  E-value=3.3e-16  Score=114.77  Aligned_cols=109  Identities=20%  Similarity=0.255  Sum_probs=87.0

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      .|.....+-..+...++.+|||||||+|+.+..+++.   .++|+++|++++..+.|++++...   .++.++++|....
T Consensus        55 ~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l---~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g  128 (224)
T d1vbfa_          55 ALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI---VDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLG  128 (224)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGC
T ss_pred             hhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHH---hcccccccccHHHHHHHHHHHhcc---cccccccCchhhc
Confidence            4555455555667788899999999999999998876   478999999999999999987653   6899999998764


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+.       .++||.|++.+..+..+.   .+.+.|++||.||+
T Consensus       129 ~~~-------~~pfD~Iiv~~a~~~ip~---~l~~qLk~GGrLV~  163 (224)
T d1vbfa_         129 YEE-------EKPYDRVVVWATAPTLLC---KPYEQLKEGGIMIL  163 (224)
T ss_dssp             CGG-------GCCEEEEEESSBBSSCCH---HHHHTEEEEEEEEE
T ss_pred             chh-------hhhHHHHHhhcchhhhhH---HHHHhcCCCCEEEE
Confidence            443       468999999876555443   45678999999987

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6e-17  Score=118.83  Aligned_cols=106  Identities=10%  Similarity=0.164  Sum_probs=85.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+..+|||||||+|..+..++...  ..+|++||+++.+++.|+++++..+. .+++++++|+.++...       .++|
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~-------~~~f  128 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPE-------PDSY  128 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCC-------SSCE
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhccccccccccc-cccccccccccccccc-------cccc
Confidence            456799999999999999887554  36899999999999999999887766 5789999999875321       5799


Q ss_pred             eEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           98 DFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        98 D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      |+|++....     +....+++.+.+.|+|||.+++.+...
T Consensus       129 D~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~  169 (222)
T d2ex4a1         129 DVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  169 (222)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEccc
Confidence            999987652     223578999999999999998865543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.64  E-value=3.4e-16  Score=116.91  Aligned_cols=104  Identities=15%  Similarity=0.147  Sum_probs=84.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++++|||+|||+|..+..+++.-  ..+|+|+|+|+.+++.|+++.+..+...++.+.++|+.......      .++|
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~------~~~f   94 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL------GKEF   94 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC------SSCE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc------cccc
Confidence            466899999999999988888762  36899999999999999999998887778999999985432111      5689


Q ss_pred             eEEEEcCCC-------cccHHHHHHHHhcccCCeEEEEe
Q 029836           98 DFVFVDADK-------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        98 D~v~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++...-       +....++..+.+.|+|||+++++
T Consensus        95 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          95 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            999986541       23457889999999999999874

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.63  E-value=3.9e-15  Score=113.44  Aligned_cols=117  Identities=15%  Similarity=0.130  Sum_probs=92.5

Q ss_pred             HHHHHHHH-hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC-ceEEEeCCchHHHH
Q 029836            8 AQFFSMLL-KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH-KIDFREGPALPLLD   85 (187)
Q Consensus         8 ~~~l~~l~-~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~   85 (187)
                      .+++..++ ...++++|||++||+|..++.++..   +++|++||.++.+++.|++|++.+++.+ +++++++|+.+++.
T Consensus       120 r~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~  196 (309)
T d2igta1         120 WEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQ  196 (309)
T ss_dssp             HHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHH
T ss_pred             HHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHH
Confidence            34444444 4457899999999999999998865   5689999999999999999999998864 69999999999987


Q ss_pred             HHhhcccCCCceeEEEEcCCC-------------cccHHHHHHHHhcccCCeEEEEeC
Q 029836           86 QLIQDEKYHGTFDFVFVDADK-------------DNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~~-------------~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .....   ..+||+|++|++.             ..+...+..+..+|+|||.+++.+
T Consensus       197 ~~~~~---~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         197 REERR---GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             HHHHH---TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             HHhhc---CCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            76543   4689999999871             122445567788999998655543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.63  E-value=3.4e-15  Score=114.78  Aligned_cols=120  Identities=14%  Similarity=0.185  Sum_probs=97.1

Q ss_pred             HHHHHHHHH-hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEEEeCCchHHH
Q 029836            7 EAQFFSMLL-KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPLL   84 (187)
Q Consensus         7 ~~~~l~~l~-~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l   84 (187)
                      +...-..++ ...++++|||++||+|..+++++..-  ..+|++||+++.+++.+++|++.+++. .+++++++|+.+++
T Consensus       131 qR~~r~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l  208 (317)
T d2b78a2         131 QRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYF  208 (317)
T ss_dssp             GHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHH
T ss_pred             HHHHHHHHHHHhhCCCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHH
Confidence            333334443 34568899999999999999877642  468999999999999999999999985 68999999999998


Q ss_pred             HHHhhcccCCCceeEEEEcCCC------------cccHHHHHHHHhcccCCeEEEEeCc
Q 029836           85 DQLIQDEKYHGTFDFVFVDADK------------DNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +.....   ..+||+|++|++.            ..+.+++..+.++|+|||+|++..+
T Consensus       209 ~~~~~~---~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         209 KYARRH---HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             HHHHHT---TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHhh---cCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            876544   4689999999872            2356788888999999999998543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.62  E-value=7.1e-16  Score=113.25  Aligned_cols=104  Identities=14%  Similarity=0.146  Sum_probs=84.5

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh
Q 029836           10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ   89 (187)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~   89 (187)
                      .++.+....++++|||||||+|..+..+++.   +.+|+++|+++++++.|+++..     .++++++++..+...    
T Consensus        11 ~~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~----   78 (225)
T d2p7ia1          11 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQL----   78 (225)
T ss_dssp             HHHHHGGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCC----
T ss_pred             HHHHhhhhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccc-----ccccccccccccccc----
Confidence            4456667778999999999999999988865   4679999999999999987642     479999999876532    


Q ss_pred             cccCCCceeEEEEcCC---CcccHHHHHHHH-hcccCCeEEEEe
Q 029836           90 DEKYHGTFDFVFVDAD---KDNYVNYHKRLI-ELVKVGGVIGYD  129 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~---~~~~~~~~~~~~-~~L~~gG~lv~~  129 (187)
                          +++||+|++...   ..+...++..+. ++|+|||.+++.
T Consensus        79 ----~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          79 ----PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             ----SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ----ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence                578999998765   345677888887 789999999985

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-15  Score=112.10  Aligned_cols=121  Identities=9%  Similarity=-0.024  Sum_probs=95.0

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC---------------
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG---------------   68 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~---------------   68 (187)
                      ++...+++..++...++.+|||+|||.|..+.+|++.   +.+|++||+|+.+++.+++.....+               
T Consensus        30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~  106 (229)
T d2bzga1          30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFK  106 (229)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEE
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceee
Confidence            4555667777777778889999999999999999985   6799999999999999888765322               


Q ss_pred             -CCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           69 -VAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        69 -~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                       ...++++.++|..+..+..      .+.||+|+....     +.....+++.+.++|||||.+++....+
T Consensus       107 ~~~~~v~~~~~d~~~l~~~~------~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~  171 (229)
T d2bzga1         107 SSSGNISLYCCSIFDLPRTN------IGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSY  171 (229)
T ss_dssp             ETTSSEEEEESCGGGGGGSC------CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred             ecCCcEEEEEcchhhccccc------cCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence             1247899999987664432      578999987643     4566789999999999999877654444

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=3.9e-15  Score=104.85  Aligned_cols=114  Identities=14%  Similarity=0.132  Sum_probs=83.8

Q ss_pred             HHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836            8 AQFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ   86 (187)
Q Consensus         8 ~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~   86 (187)
                      +.+...|... .++.+|||+|||+|..+++++..   +++++++|.++.+++.+++|++.+++..+  +...+...+++.
T Consensus        29 e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~~--v~~~~~d~~~~~  103 (171)
T d1ws6a1          29 KALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGAR--VVALPVEVFLPE  103 (171)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCCE--EECSCHHHHHHH
T ss_pred             HHHHHHhhccccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccccc--eeeeehhccccc
Confidence            3444555543 46789999999999999987764   56899999999999999999999998654  555566554443


Q ss_pred             HhhcccCCCceeEEEEcCC-CcccHHHHHHHH--hcccCCeEEEEe
Q 029836           87 LIQDEKYHGTFDFVFVDAD-KDNYVNYHKRLI--ELVKVGGVIGYD  129 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~~-~~~~~~~~~~~~--~~L~~gG~lv~~  129 (187)
                      ....   .++||+||+|++ ..+....+..+.  .+|++||++++.
T Consensus       104 ~~~~---~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         104 AKAQ---GERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             HHHT---TCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             cccc---CCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            3222   568999999987 333444444443  589999999874

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.62  E-value=2.5e-15  Score=112.25  Aligned_cols=104  Identities=18%  Similarity=0.219  Sum_probs=87.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+.++|||||||+|..+..+++..| +.+++++|. +++++.+++++...++.++++++.+|..+..         ..+|
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~---------~~~~  147 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---------PRKA  147 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SSCE
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcc-eeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc---------ccch
Confidence            4568999999999999999999987 789999998 7789999999999999899999999986432         3579


Q ss_pred             eEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           98 DFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        98 D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |+|++...-     +....+++++.+.|||||.+++.+..
T Consensus       148 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         148 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            999987542     23457799999999999999887654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=6.1e-16  Score=113.36  Aligned_cols=112  Identities=16%  Similarity=0.196  Sum_probs=86.8

Q ss_pred             HHHHHHHHH-hhcCCCEEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCchHHHHHHHHHHHcCCC----CceEEE
Q 029836            7 EAQFFSMLL-KLINAKNTMEIGVFTGYSLLATALAIPD-----DGKILALDITKEHYEKGLPIIQKAGVA----HKIDFR   76 (187)
Q Consensus         7 ~~~~l~~l~-~~~~~~~vLeiG~g~G~~~~~l~~~~~~-----~~~v~~vd~~~~~~~~a~~~~~~~~~~----~~i~~~   76 (187)
                      .+.+++.|. ...+..+|||||||+|+.+..+++.+++     ..+|+++|++++.++.|++++...+..    .++.++
T Consensus        67 ~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~  146 (223)
T d1r18a_          67 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV  146 (223)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEE
Confidence            455555553 4567789999999999999998876432     358999999999999999987654321    589999


Q ss_pred             eCCchHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           77 EGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        77 ~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ++|..+..+.       .++||.|++.+.....+.   .+.+.|++||.+++
T Consensus       147 ~~d~~~~~~~-------~~~fD~Iiv~~a~~~~p~---~l~~~Lk~gG~lV~  188 (223)
T d1r18a_         147 EGDGRKGYPP-------NAPYNAIHVGAAAPDTPT---ELINQLASGGRLIV  188 (223)
T ss_dssp             ESCGGGCCGG-------GCSEEEEEECSCBSSCCH---HHHHTEEEEEEEEE
T ss_pred             eccccccccc-------ccceeeEEEEeechhchH---HHHHhcCCCcEEEE
Confidence            9999765443       468999999987555544   45679999999986

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=7.1e-15  Score=104.61  Aligned_cols=113  Identities=12%  Similarity=0.094  Sum_probs=92.0

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836            8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      ..++..|-......++||++||+|..+++.+...  ..+|++||.++.+++.+++|++..+. .+++++.+|+.+++...
T Consensus        32 e~lfn~l~~~~~~~~vLDlfaGsG~~giealsrG--a~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~  108 (183)
T d2fpoa1          32 ETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQK  108 (183)
T ss_dssp             HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSC
T ss_pred             HHHHhhhhcccchhhhhhhhccccceeeeEEecC--cceeEEEEEeechhhHHHHHHhhccc-cceeeeeeccccccccc
Confidence            4455555556788999999999999999988752  36899999999999999999998877 67899999998877543


Q ss_pred             hhcccCCCceeEEEEcCC--CcccHHHHHHHH--hcccCCeEEEEe
Q 029836           88 IQDEKYHGTFDFVFVDAD--KDNYVNYHKRLI--ELVKVGGVIGYD  129 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~--~~L~~gG~lv~~  129 (187)
                            ..+||+||+|++  ...+...++.+.  .+|+++|++++.
T Consensus       109 ------~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         109 ------GTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             ------CCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ------ccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence                  678999999997  334566777665  479999999974

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=5.5e-15  Score=112.49  Aligned_cols=118  Identities=15%  Similarity=0.147  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC---CceEEEeCCchH
Q 029836            6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA---HKIDFREGPALP   82 (187)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~---~~i~~~~~d~~~   82 (187)
                      ...+++..++...+.++|||+|||+|..+..+++.   +.+|+|+|+|+++++.|+++....+..   .+..+...+...
T Consensus        43 ~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (292)
T d1xvaa_          43 EYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  119 (292)
T ss_dssp             HHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             HHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence            34566777777777889999999999999999975   579999999999999999998876653   234556666654


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC-----------CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD-----------KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~-----------~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .-..+.    ..++||+|++-..           .++...+++.+.+.|||||+++++-
T Consensus       120 ~~~~~~----~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         120 LDKDVP----AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             HHHHSC----CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccccC----CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            322221    1468999987532           1235678999999999999999863

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=4.4e-15  Score=113.81  Aligned_cols=108  Identities=19%  Similarity=0.178  Sum_probs=90.0

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC----CCCceEEEeCCchHHHHHHhhc
Q 029836           15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG----VAHKIDFREGPALPLLDQLIQD   90 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~----~~~~i~~~~~d~~~~l~~~~~~   90 (187)
                      +...+|++||.||.|.|..+.++++..+ ..+|++||++++.++.+++++....    ..++++++.+|+.+++...   
T Consensus        73 ~~~~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~---  148 (312)
T d1uira_          73 LTHPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT---  148 (312)
T ss_dssp             HHSSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC---
T ss_pred             hhCCCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc---
Confidence            3456889999999999999999887643 6899999999999999999986431    2378999999999998764   


Q ss_pred             ccCCCceeEEEEcCCC----------cccHHHHHHHHhcccCCeEEEEe
Q 029836           91 EKYHGTFDFVFVDADK----------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~----------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                         .++||+|++|...          -...++++.+.+.|+|||++++.
T Consensus       149 ---~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         149 ---EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             ---CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             ---CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence               6789999999731          11368999999999999999863

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.60  E-value=5.3e-15  Score=106.92  Aligned_cols=103  Identities=19%  Similarity=0.266  Sum_probs=86.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ....+||||||.|..+..+|+..| +..++|+|+++.++..|.+.+.+.++ +|+.++++|+.++...+.     .+++|
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p-~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~~-----~~~~~  103 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFE-----DGEID  103 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSC-----TTCCS
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCC-CCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHHhhhcc-----CCcee
Confidence            345799999999999999999987 79999999999999999999999998 689999999987654332     56888


Q ss_pred             EEEEc---CCCc--------ccHHHHHHHHhcccCCeEEEE
Q 029836           99 FVFVD---ADKD--------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        99 ~v~~d---~~~~--------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|++.   ++..        -...+++.+.+.|+|||.|.+
T Consensus       104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1         104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             hhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence            88765   3311        137899999999999999976

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.60  E-value=5.2e-15  Score=112.28  Aligned_cols=107  Identities=13%  Similarity=0.131  Sum_probs=89.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC---CCCceEEEeCCchHHHHHHhhccc
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG---VAHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      ...+|++||-||.|.|..+.++++..+ ..++++||+++..++.+++.+....   -.++++++.+|+.+++...     
T Consensus        86 ~~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----  159 (295)
T d1inla_          86 LHPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-----  159 (295)
T ss_dssp             HSSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-----
T ss_pred             hCCCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC-----
Confidence            456789999999999999999988644 6899999999999999999887542   1379999999999988764     


Q ss_pred             CCCceeEEEEcCCC--------cccHHHHHHHHhcccCCeEEEEe
Q 029836           93 YHGTFDFVFVDADK--------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        93 ~~~~~D~v~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       .++||+|++|...        -...++++.+.+.|+|||++++.
T Consensus       160 -~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q  203 (295)
T d1inla_         160 -KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  203 (295)
T ss_dssp             -SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence             6789999999641        12478999999999999999974

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.60  E-value=3e-15  Score=110.61  Aligned_cols=95  Identities=20%  Similarity=0.150  Sum_probs=75.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..+++.   +.+|+|+|+++.+++.|+++.    . .  .++.+++.+. + +     .+++||
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~----~-~--~~~~~~~~~l-~-~-----~~~~fD  104 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKG----V-K--NVVEAKAEDL-P-F-----PSGAFE  104 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHT----C-S--CEEECCTTSC-C-S-----CTTCEE
T ss_pred             CCCEEEEECCCCchhccccccc---ceEEEEeeccccccccccccc----c-c--cccccccccc-c-c-----cccccc
Confidence            5679999999999999999875   579999999999999998753    1 1  2566777653 2 1     157999


Q ss_pred             EEEEcCC----CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           99 FVFVDAD----KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        99 ~v~~d~~----~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|++-..    ..+...+++.+.++|||||+++++-
T Consensus       105 ~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         105 AVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             EEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence            9997543    3567789999999999999999864

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.59  E-value=4.6e-15  Score=107.72  Aligned_cols=106  Identities=16%  Similarity=0.144  Sum_probs=85.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..+++..+ +++|+++|+++.+++.+++..+..   .++.++.+++..... ...   ....
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~-~~~---~~~~  125 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWK-YSG---IVEK  125 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGG-TTT---TCCC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhcc---CCceEEEeeccCccc-ccc---ccce
Confidence            34668999999999999999999886 679999999999999999988875   589999998865321 110   1357


Q ss_pred             eeEEEEcCC-CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           97 FDFVFVDAD-KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        97 ~D~v~~d~~-~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|+|+.+.. ..+...++.++.+.|||||.+++..
T Consensus       126 vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         126 VDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            888888754 4566778999999999999998754

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=3.5e-15  Score=111.74  Aligned_cols=103  Identities=14%  Similarity=0.128  Sum_probs=88.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .++++|||+|||+|..++.+++. + .++|+++|++|.+++.+++|++.+++.++++++++|+.++.+        .+.|
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~-~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~--------~~~~  175 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVY-G-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIA  175 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHH-T-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCE
T ss_pred             CCccEEEECcceEcHHHHHHHHh-C-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc--------CCCC
Confidence            46789999999999999999976 3 479999999999999999999999999899999999987643        5689


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |.|+++.++ ....+++.+.++|++||++.+++.
T Consensus       176 D~Ii~~~p~-~~~~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         176 DRILMGYVV-RTHEFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             EEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CEEEECCCC-chHHHHHHHHhhcCCCCEEEEEec
Confidence            999998653 345677888899999999976543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.59  E-value=7.6e-15  Score=111.88  Aligned_cols=152  Identities=16%  Similarity=0.167  Sum_probs=107.2

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC---CCceEEEeCCchHHHHHHhhc
Q 029836           14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV---AHKIDFREGPALPLLDQLIQD   90 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~l~~~~~~   90 (187)
                      ++....|++||-||.|.|..+.++++..+ ..++++||++++.++.+++.+.....   .++++++.+|+.+++...   
T Consensus       101 l~~~~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~---  176 (312)
T d2b2ca1         101 MFAHPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH---  176 (312)
T ss_dssp             HHHSSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC---
T ss_pred             HhcCCCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC---
Confidence            34467899999999999999999997643 57999999999999999998865322   279999999999998764   


Q ss_pred             ccCCCceeEEEEcCCC-------cccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHHH
Q 029836           91 EKYHGTFDFVFVDADK-------DNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKAL  163 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (187)
                         .++||+|++|...       -...++++.+.+.|+|||+++.....       +.      ........+.+..+.+
T Consensus       177 ---~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s-------~~------~~~~~~~~i~~~l~~v  240 (312)
T d2b2ca1         177 ---KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES-------VW------LHLPLIAHLVAFNRKI  240 (312)
T ss_dssp             ---TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCC-------TT------TCHHHHHHHHHHHHHH
T ss_pred             ---CCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC-------hH------HhHHHHHHHHHHhhhc
Confidence               6789999999751       22467899999999999999974211       11      1123334444445555


Q ss_pred             hcCCCeeEEEeec----CCeeEEEEE
Q 029836          164 AVDPRIEICQISI----ADGVTLCRR  185 (187)
Q Consensus       164 ~~~~~~~~~~~p~----~~G~~i~~k  185 (187)
                      ...........|+    ..|+.++.|
T Consensus       241 F~~v~~y~~~vPtyp~G~w~f~~aSk  266 (312)
T d2b2ca1         241 FPAVTYAQSIVSTYPSGSMGYLICAK  266 (312)
T ss_dssp             CSEEEEEEEECTTSGGGEEEEEEEES
T ss_pred             cceEEEeeeccCCcCCccceeeEEEC
Confidence            5444444455553    235777765

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.58  E-value=5.4e-15  Score=108.63  Aligned_cols=118  Identities=18%  Similarity=0.273  Sum_probs=88.7

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAI---PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~---~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      .|....+++.|+...+|++|||||++.|.++++++..+   ...++++++|+++........      ..++++++++|+
T Consensus        65 ~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs  138 (232)
T d2bm8a1          65 DPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDC  138 (232)
T ss_dssp             CHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCS
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeeccc
Confidence            47777889999999999999999999999999887543   446899999998865433221      126899999987


Q ss_pred             hH--HHHHHhhcccCCCceeEEEEcCCCcccHHHHH-HHHhcccCCeEEEEeCcC
Q 029836           81 LP--LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHK-RLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        81 ~~--~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~-~~~~~L~~gG~lv~~~~~  132 (187)
                      .+  .+..+.     ...+|+||+|+.+.......+ ...++|++||++|++|..
T Consensus       139 ~~~~~~~~l~-----~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         139 SDLTTFEHLR-----EMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             SCSGGGGGGS-----SSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSCH
T ss_pred             ccHHHHHHHH-----hcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEEcCC
Confidence            54  344332     346899999988554333222 245899999999998875

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.57  E-value=2e-15  Score=112.84  Aligned_cols=104  Identities=12%  Similarity=0.082  Sum_probs=83.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .+..+|||+|||+|..+..++...  ..+|++||+++.+++.|++++...   ++++++++++.++-..       +++|
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~--~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~-------~~~f  159 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLP-------PNTY  159 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCC-------SSCE
T ss_pred             CCCCeEEEecccCChhhHHHHhhc--CceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccC-------CCcc
Confidence            356799999999999999988654  358999999999999999877543   5689999999765321       5789


Q ss_pred             eEEEEcCCCc-----ccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           98 DFVFVDADKD-----NYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        98 D~v~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      |+|++...-.     +...+++.+.+.|+|||++++.+...
T Consensus       160 D~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~  200 (254)
T d1xtpa_         160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS  200 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             ceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCC
Confidence            9999876522     24578999999999999999876544

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.56  E-value=1.7e-14  Score=108.62  Aligned_cols=108  Identities=12%  Similarity=0.131  Sum_probs=90.5

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC---CCCceEEEeCCchHHHHHHhhcc
Q 029836           15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG---VAHKIDFREGPALPLLDQLIQDE   91 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~l~~~~~~~   91 (187)
                      +...+|++||-||.|.|..+.++++..+ ..++++||++++.++.+++.+....   ..+|++++.+|+..++...    
T Consensus        71 ~~~~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~----  145 (274)
T d1iy9a_          71 FTHPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS----  145 (274)
T ss_dssp             HHSSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC----
T ss_pred             hccCCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc----
Confidence            3456789999999999999999997643 6899999999999999999986432   2379999999999988764    


Q ss_pred             cCCCceeEEEEcCCC-------cccHHHHHHHHhcccCCeEEEEe
Q 029836           92 KYHGTFDFVFVDADK-------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                        .++||+|++|...       -...++++.+.+.|+|||+++..
T Consensus       146 --~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q  188 (274)
T d1iy9a_         146 --ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (274)
T ss_dssp             --CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             --CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence              5789999999751       12578999999999999999964

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.2e-14  Score=109.32  Aligned_cols=95  Identities=21%  Similarity=0.245  Sum_probs=77.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++.+|||||||+|..+..+++..+ +.+++++|+++.+++.|++..      +++++.++|+.+. + +     .+++||
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l-~-~-----~~~sfD  149 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-P-F-----SDTSMD  149 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-S-B-----CTTCEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhccc------ccccceeeehhhc-c-C-----CCCCEE
Confidence            567999999999999999999876 689999999999999888753      5789999998754 2 1     167899


Q ss_pred             EEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           99 FVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|+.......    ++++.+.|||||++++...
T Consensus       150 ~v~~~~~~~~----~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         150 AIIRIYAPCK----AEELARVVKPGGWVITATP  178 (268)
T ss_dssp             EEEEESCCCC----HHHHHHHEEEEEEEEEEEE
T ss_pred             EEeecCCHHH----HHHHHHHhCCCcEEEEEee
Confidence            9997654433    5678899999999998643

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.54  E-value=1.2e-14  Score=106.90  Aligned_cols=108  Identities=14%  Similarity=0.047  Sum_probs=82.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|.++..+++..+ ++.|+++|+++.+++.+++.....   +++..+.+++.....-. ..   ...
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~-~~---~~~  143 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYA-NI---VEK  143 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGT-TT---CCC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcccc-cc---cce
Confidence            34567999999999999999999866 689999999999999998876543   57888888886553321 11   234


Q ss_pred             eeEEEEcCC-CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           97 FDFVFVDAD-KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        97 ~D~v~~d~~-~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|+++.+.. ..+...++..+.+.|||||.+++....
T Consensus       144 v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~  180 (230)
T d1g8sa_         144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKA  180 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             eEEeeccccchHHHHHHHHHHHHhcccCceEEEEeec
Confidence            556666554 455677899999999999998876433

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.4e-14  Score=109.51  Aligned_cols=107  Identities=15%  Similarity=0.187  Sum_probs=88.4

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc---CCCCceEEEeCCchHHHHHHhhccc
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA---GVAHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~---~~~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      ....|++||-||.|.|..+.++++..+ ..+++.||++++.++.+++.+...   -..++++++.+|+..++...     
T Consensus        75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~-----  148 (285)
T d2o07a1          75 SHPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN-----  148 (285)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC-----
T ss_pred             hCcCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC-----
Confidence            456789999999999999999987643 689999999999999999988642   12379999999999998754     


Q ss_pred             CCCceeEEEEcCCC-------cccHHHHHHHHhcccCCeEEEEe
Q 029836           93 YHGTFDFVFVDADK-------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        93 ~~~~~D~v~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       .++||+|++|...       -...++++.+.+.|+|||++++.
T Consensus       149 -~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         149 -QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             -SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence             5789999999651       12357899999999999999975

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=1.8e-14  Score=105.72  Aligned_cols=106  Identities=16%  Similarity=0.169  Sum_probs=84.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..+++..+++++|+++|+++.+++.++++.+..   .++..+..|+..... ...   ..+.
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~~~~~-~~~---~~~~  143 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEE-YRA---LVPK  143 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGG-GTT---TCCC
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEECCCccc-ccc---cccc
Confidence            345689999999999999999998876899999999999999999887654   467777777643211 111   1468


Q ss_pred             eeEEEEcCC-CcccHHHHHHHHhcccCCeEEEEe
Q 029836           97 FDFVFVDAD-KDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        97 ~D~v~~d~~-~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+|+.|.. ......+++.+.+.|||||.+++.
T Consensus       144 vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            999999876 445677899999999999999874

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.54  E-value=7.3e-14  Score=105.29  Aligned_cols=107  Identities=12%  Similarity=0.181  Sum_probs=87.8

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC---------CCCceEEEeCCchHHH
Q 029836           14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG---------VAHKIDFREGPALPLL   84 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~---------~~~~i~~~~~d~~~~l   84 (187)
                      ++...+|++||.||.|.|..+..+++. + ..+++.||++++.++.+++.+....         ..++++++.+|+..++
T Consensus        67 l~~~~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l  144 (276)
T d1mjfa_          67 MLAHPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI  144 (276)
T ss_dssp             HHHSSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH
T ss_pred             hhcCCCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH
Confidence            344568899999999999999988865 4 4689999999999999998875321         2478999999999888


Q ss_pred             HHHhhcccCCCceeEEEEcCCC-------cccHHHHHHHHhcccCCeEEEEe
Q 029836           85 DQLIQDEKYHGTFDFVFVDADK-------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..       .++||+|++|...       -...++++.+.+.|+|||++++.
T Consensus       145 ~~-------~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         145 KN-------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             HH-------CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             hc-------cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            64       5689999999752       12368999999999999999864

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.52  E-value=4.3e-14  Score=105.64  Aligned_cols=104  Identities=18%  Similarity=0.222  Sum_probs=87.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ...++|||||||+|..+..+++++| +.+++++|+ |+.++.++++++..+..+++.+..+|..+.+         ..+|
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~---------p~~~  148 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL---------PVTA  148 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SCCE
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc---------cccc
Confidence            4557999999999999999999987 789999998 7899999999999999899999999886533         3469


Q ss_pred             eEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           98 DFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        98 D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |+|++-..     .+....+++++.+.|||||.+++.+..
T Consensus       149 D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         149 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             hhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            99987654     233467899999999999988876643

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.51  E-value=1.2e-13  Score=104.72  Aligned_cols=107  Identities=19%  Similarity=0.235  Sum_probs=89.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC---CCCceEEEeCCchHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG---VAHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ..+|++||-||.|.|..+.++++..+ ..++++||++++.++.+++.+....   ..++++++.+|+.+++....     
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~-----  151 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAA-----  151 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSC-----
T ss_pred             CCCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhcc-----
Confidence            46789999999999999999988644 5799999999999999999886432   24899999999999887642     


Q ss_pred             CCceeEEEEcCCC-------cccHHHHHHHHhcccCCeEEEEe
Q 029836           94 HGTFDFVFVDADK-------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        94 ~~~~D~v~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++||+|++|...       -...++++.+.+.|+|||++++.
T Consensus       152 ~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  194 (290)
T d1xj5a_         152 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  194 (290)
T ss_dssp             TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence            3589999999752       12478999999999999999975

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=6.5e-14  Score=105.70  Aligned_cols=109  Identities=12%  Similarity=0.077  Sum_probs=80.9

Q ss_pred             CEEEEEcccccHHHHHHHhhC----CC-CCEEEEEeCCchHHHHHHHHHHHcCCCCce--EEEeCCchHHHHHHhhcccC
Q 029836           21 KNTMEIGVFTGYSLLATALAI----PD-DGKILALDITKEHYEKGLPIIQKAGVAHKI--DFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~----~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i--~~~~~d~~~~l~~~~~~~~~   93 (187)
                      .+|||||||+|..+..++..+    +. ..++++||+++.+++.+++++.......++  .+.+.++.++....... ..
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  120 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK-KE  120 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS-SS
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc-CC
Confidence            389999999999998887653    21 247899999999999999998765443444  45666766553332211 12


Q ss_pred             CCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeC
Q 029836           94 HGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        94 ~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .++||+|++-..   ..+...+++.+.++|+|||++++..
T Consensus       121 ~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             CCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEE
Confidence            578999998765   4567889999999999999988753

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=4.7e-14  Score=101.91  Aligned_cols=100  Identities=19%  Similarity=0.153  Sum_probs=78.1

Q ss_pred             HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcc
Q 029836           12 SMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDE   91 (187)
Q Consensus        12 ~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~   91 (187)
                      ..+....+..+|||||||+|..+..+.       +++++|+++.+++.+++        .+++++++|+.+.. ..    
T Consensus        29 ~~~~~~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~--------~~~~~~~~d~~~l~-~~----   88 (208)
T d1vlma_          29 QAVKCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARK--------RGVFVLKGTAENLP-LK----   88 (208)
T ss_dssp             HHHHHHCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHH--------TTCEEEECBTTBCC-SC----
T ss_pred             HHHHhhCCCCeEEEECCCCcccccccc-------eEEEEeCChhhcccccc--------cccccccccccccc-cc----
Confidence            344445566689999999998877653       35899999999998876        36889999987542 11    


Q ss_pred             cCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           92 KYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        92 ~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                        +++||+|++...   ..+...++.++.+.|+|||.+++.....
T Consensus        89 --~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_          89 --DESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             --TTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             --cccccccccccccccccccccchhhhhhcCCCCceEEEEecCC
Confidence              579999998765   3457789999999999999999876544

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=2.3e-13  Score=105.08  Aligned_cols=102  Identities=16%  Similarity=0.163  Sum_probs=83.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH-HHHhhcccCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL-DQLIQDEKYH   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l-~~~~~~~~~~   94 (187)
                      ...++++|||||||+|..+..+++..  ..+|+++|.++ ++..|+++.+.++...++++++++..+.. +        .
T Consensus        35 ~~~~~~~VLDlGcGtG~ls~~aa~~G--a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~--------~  103 (328)
T d1g6q1_          35 DLFKDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLP--------F  103 (328)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------S
T ss_pred             ccCCcCEEEEeCCCCCHHHHHHHHhC--CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCc--------c
Confidence            45688999999999999999888763  36999999986 67889999999999999999999987642 2        4


Q ss_pred             CceeEEEEcCC------CcccHHHHHHHHhcccCCeEEEE
Q 029836           95 GTFDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        95 ~~~D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +++|+|+....      .......+....++|||||.++-
T Consensus       104 ~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP  143 (328)
T d1g6q1_         104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence            68999998643      23456677777899999999973

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=1.3e-13  Score=105.91  Aligned_cols=103  Identities=14%  Similarity=0.134  Sum_probs=83.4

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++++|||||||+|..+..+++..  ..+|+++|.++. ...++++++.++..++++++++++.+.-..       .+
T Consensus        30 ~~~~~~~VLDiGcG~G~ls~~aa~~G--a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~-------~~   99 (316)
T d1oria_          30 HLFKDKVVLDVGSGTGILCMFAAKAG--ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELP-------VE   99 (316)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCS-------SS
T ss_pred             ccCCcCEEEEEecCCcHHHHHHHHhC--CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccc-------cc
Confidence            35588999999999999999888863  368999999975 577888899999989999999999764211       46


Q ss_pred             ceeEEEEcCC------CcccHHHHHHHHhcccCCeEEEE
Q 029836           96 TFDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        96 ~~D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ++|+|+....      ......++..+.++|+|||.++-
T Consensus       100 ~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         100 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            8999987643      23457788888899999999973

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=8.2e-13  Score=98.92  Aligned_cols=118  Identities=14%  Similarity=0.258  Sum_probs=92.8

Q ss_pred             CHHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836            4 SPDEAQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus         4 ~~~~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      .|++..++..+..   ..+..+++|+|||+|..++.+++. + +.+|+++|+++++++.|++|.+.+++..++.+..++.
T Consensus        92 RpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~-~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~  169 (271)
T d1nv8a_          92 RPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEF  169 (271)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESST
T ss_pred             hhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-c-cceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccc
Confidence            4677777776654   345679999999999999998864 5 7899999999999999999999999988999999998


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCCC-------------ccc---------HHHHH-HHHhcccCCeEEEEe
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDADK-------------DNY---------VNYHK-RLIELVKVGGVIGYD  129 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~~-------------~~~---------~~~~~-~~~~~L~~gG~lv~~  129 (187)
                      .+.++..      .++||+|+.+++.             +..         ..+++ .+.++|++||++++.
T Consensus       170 ~~~~~~~------~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E  235 (271)
T d1nv8a_         170 LEPFKEK------FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  235 (271)
T ss_dssp             TGGGGGG------TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             ccccccc------cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence            8776543      5789999999760             000         12333 345789999999873

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.6e-13  Score=104.70  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=85.1

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc-------CC-CCceEEEeCCchHH-HH
Q 029836           15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA-------GV-AHKIDFREGPALPL-LD   85 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~-------~~-~~~i~~~~~d~~~~-l~   85 (187)
                      +...+..+|||+|||+|..+..++...+ ..+++|||+++.+++.|+++.++.       |. ..+++++++|+.+. ..
T Consensus       147 ~~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~  225 (328)
T d1nw3a_         147 IKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR  225 (328)
T ss_dssp             SCCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHH
T ss_pred             cCCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccc
Confidence            3456678999999999999999998766 678999999999999998876653       22 25799999999753 12


Q ss_pred             HHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           86 QLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ..      ....|+|++...  ..+....+.++.+.|||||.+|+...+
T Consensus       226 ~~------~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~  268 (328)
T d1nw3a_         226 ER------IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  268 (328)
T ss_dssp             HH------HHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             cc------cCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence            11      123588988654  345567888899999999999986543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.6e-13  Score=102.57  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=80.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++++|||||||+|..+..++++.  ..+|+++|.++.+. .+++....++..+++++++++..+....       .+
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~G--a~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~~-------~~  101 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHLP-------VE  101 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCCS-------CS
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcC--CCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcCc-------cc
Confidence            34578999999999999999998863  36999999999875 5677778888889999999999764211       46


Q ss_pred             ceeEEEEcCC-----Ccc-cHHHHHHHHhcccCCeEEEE
Q 029836           96 TFDFVFVDAD-----KDN-YVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        96 ~~D~v~~d~~-----~~~-~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +||+|+....     .+. ...++....++|+|||.++-
T Consensus       102 ~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         102 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             cceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            8999998643     233 34566666789999999974

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.44  E-value=1.2e-12  Score=92.78  Aligned_cols=117  Identities=16%  Similarity=0.142  Sum_probs=91.2

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC-ceEEEeCCchHHHH
Q 029836            7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH-KIDFREGPALPLLD   85 (187)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~   85 (187)
                      ...++..|-......++||+.||+|..+++.++.-  ..+++.||.+...++..++|++..+... ...+...|..+++.
T Consensus        31 realFn~l~~~~~~~~vLDlFaGsG~~glEalSRG--A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~  108 (183)
T d2ifta1          31 KETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK  108 (183)
T ss_dssp             HHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT
T ss_pred             HHHHHHHhhhhcccceEeecccCccceeeeeeeec--ceeeEEeecccchhhhHhhHHhhhccccccccccccccccccc
Confidence            34555555555678899999999999999988753  4699999999999999999999998754 57778888776654


Q ss_pred             HHhhcccCCCceeEEEEcCCC--cccHHHHHHHH--hcccCCeEEEEe
Q 029836           86 QLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLI--ELVKVGGVIGYD  129 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~--~~L~~gG~lv~~  129 (187)
                      ...    ...+||+||+|++.  ..+...++.+.  .+|+++|++++.
T Consensus       109 ~~~----~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE  152 (183)
T d2ifta1         109 QPQ----NQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVE  152 (183)
T ss_dssp             SCC----SSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ccc----cCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEE
Confidence            321    13579999999983  33566777665  479999999985

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=4.9e-12  Score=99.53  Aligned_cols=111  Identities=14%  Similarity=0.202  Sum_probs=82.4

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC-------C-CCceEE-EeCCchH--HH
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG-------V-AHKIDF-REGPALP--LL   84 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~-------~-~~~i~~-~~~d~~~--~l   84 (187)
                      .+.+.+++||+|||.|..+..+|...+ +.+++|||+++.+++.|+++.+..+       . ...+.+ ..++..+  ..
T Consensus       213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~  291 (406)
T d1u2za_         213 QLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRV  291 (406)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHH
T ss_pred             CCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccc
Confidence            456678999999999999999998876 5799999999999999999887642       1 123333 3444432  22


Q ss_pred             HHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           85 DQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ...      -...|+|++...  ..+....+.++.+.|||||.||..+.+.
T Consensus       292 d~~------~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~~  336 (406)
T d1u2za_         292 AEL------IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLR  336 (406)
T ss_dssp             HHH------GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             ccc------cccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEecccC
Confidence            222      246799998754  4556788899999999999999876544

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.37  E-value=9.2e-12  Score=89.46  Aligned_cols=89  Identities=17%  Similarity=0.181  Sum_probs=71.0

Q ss_pred             CCHHHHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836            3 TSPDEAQFFSMLLKL---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP   79 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d   79 (187)
                      +++.....+..++..   .++++|||+|||+|..++.++.. + ..+|+++|+++.+++.+++|++..+.  +.+++.+|
T Consensus        27 Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~-g-~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d  102 (201)
T d1wy7a1          27 TPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGD  102 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESC
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHc-C-CCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECc
Confidence            555655555554443   35789999999999999987764 2 36999999999999999999988775  68889998


Q ss_pred             chHHHHHHhhcccCCCceeEEEEcCC
Q 029836           80 ALPLLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      ..++          +++||+|++|++
T Consensus       103 ~~~~----------~~~fD~Vi~nPP  118 (201)
T d1wy7a1         103 VSEF----------NSRVDIVIMNPP  118 (201)
T ss_dssp             GGGC----------CCCCSEEEECCC
T ss_pred             hhhh----------CCcCcEEEEcCc
Confidence            8543          568999999987

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=5.7e-12  Score=89.80  Aligned_cols=110  Identities=16%  Similarity=0.114  Sum_probs=87.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...+...+||++||+|..+..+++.++ +++|+++|.++++++.++++++..+  .++.++++++.+.-..+...+  .+
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~~--~~   94 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLG--IE   94 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTT--CS
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHcC--CC
Confidence            345667999999999999999999987 7999999999999999999998765  589999998866432222211  47


Q ss_pred             ceeEEEEcCCC------------cccHHHHHHHHhcccCCeEEEEeC
Q 029836           96 TFDFVFVDADK------------DNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        96 ~~D~v~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ++|.|++|...            ......++.+.++|++||.+++-+
T Consensus        95 ~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          95 KVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             CEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             CcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence            89999999642            123466777889999999998744

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6.8e-12  Score=93.07  Aligned_cols=83  Identities=14%  Similarity=0.231  Sum_probs=68.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH-HHHhhcccCCCcee
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL-DQLIQDEKYHGTFD   98 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l-~~~~~~~~~~~~~D   98 (187)
                      ..++||+|||+|.+++.++...+ +.+++++|+++++++.|++|++.+++..++.+++.+....+ ..+....  .++||
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~--~~~fD  138 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEES--EIIYD  138 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCC--SCCBS
T ss_pred             cceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcc--cCcee
Confidence            45999999999999999998876 79999999999999999999999999999999887654432 2221111  46899


Q ss_pred             EEEEcCC
Q 029836           99 FVFVDAD  105 (187)
Q Consensus        99 ~v~~d~~  105 (187)
                      +|++.++
T Consensus       139 ~ivsNPP  145 (250)
T d2h00a1         139 FCMCNPP  145 (250)
T ss_dssp             EEEECCC
T ss_pred             EEEecCc
Confidence            9999876

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=2.3e-11  Score=94.59  Aligned_cols=120  Identities=13%  Similarity=0.112  Sum_probs=93.6

Q ss_pred             CCCCHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEE
Q 029836            1 MMTSPDEAQFFSMLLK----LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFR   76 (187)
Q Consensus         1 ~~~~~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~   76 (187)
                      +|+++...+.|...+.    ..+..+|||+.||.|.+++.+++.   ..+|+++|.++.+++.|++|.+.++. .+++++
T Consensus       190 fQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i-~n~~~~  265 (358)
T d1uwva2         190 IQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGL-QNVTFY  265 (358)
T ss_dssp             CCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEE
T ss_pred             hccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhccc-ccceee
Confidence            3666666666655442    335679999999999999999975   57999999999999999999999998 689999


Q ss_pred             eCCchHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           77 EGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        77 ~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .++..+.+......   ..++|+|++|+++......+..+.+. ++.-++.+
T Consensus       266 ~~~~~~~~~~~~~~---~~~~d~vilDPPR~G~~~~~~~l~~~-~~~~ivYV  313 (358)
T d1uwva2         266 HENLEEDVTKQPWA---KNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYV  313 (358)
T ss_dssp             ECCTTSCCSSSGGG---TTCCSEEEECCCTTCCHHHHHHHHHH-CCSEEEEE
T ss_pred             ecchhhhhhhhhhh---hccCceEEeCCCCccHHHHHHHHHHc-CCCEEEEE
Confidence            99988765443221   46799999999987777777776653 56666554

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.29  E-value=1.3e-11  Score=88.10  Aligned_cols=85  Identities=16%  Similarity=0.253  Sum_probs=66.0

Q ss_pred             CCHHHHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836            3 TSPDEAQFFSMLLKL---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP   79 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d   79 (187)
                      ++++....+-..+..   ..+++|||+|||+|..++.++.. + ..+|+++|+++.+++.|++|+      .+++++++|
T Consensus        29 T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~-g-a~~V~~vDid~~a~~~ar~N~------~~~~~~~~D  100 (197)
T d1ne2a_          29 TDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNC------GGVNFMVAD  100 (197)
T ss_dssp             CCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHC------TTSEEEECC
T ss_pred             CCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHc-C-CCcccccccCHHHHHHHHHcc------ccccEEEEe
Confidence            455555544444433   36789999999999998877764 2 368999999999999999876      468899999


Q ss_pred             chHHHHHHhhcccCCCceeEEEEcCC
Q 029836           80 ALPLLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                      ..+.          .++||+|+.+++
T Consensus       101 ~~~l----------~~~fD~Vi~NPP  116 (197)
T d1ne2a_         101 VSEI----------SGKYDTWIMNPP  116 (197)
T ss_dssp             GGGC----------CCCEEEEEECCC
T ss_pred             hhhc----------CCcceEEEeCcc
Confidence            8542          578999999976

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1e-12  Score=97.58  Aligned_cols=115  Identities=20%  Similarity=0.044  Sum_probs=75.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEE-------EeCCchH--H-HHHHh
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDF-------REGPALP--L-LDQLI   88 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~-------~~~d~~~--~-l~~~~   88 (187)
                      ++++|||||||+|..+..++...  ..+|+++|+++.+++.|+++++..+.......       ..+....  . .....
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            45699999999999887766542  35799999999999999999987654211000       0000000  0 00000


Q ss_pred             ----------------hcccCCCceeEEEEcCC-------CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836           89 ----------------QDEKYHGTFDFVFVDAD-------KDNYVNYHKRLIELVKVGGVIGYDNTLWGG  135 (187)
Q Consensus        89 ----------------~~~~~~~~~D~v~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                                      ......++||+|+....       .+++..+++.+.++|||||++++.++...+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~  198 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP  198 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccc
Confidence                            00001468999997643       235667899999999999999998776543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=3.4e-11  Score=86.53  Aligned_cols=102  Identities=12%  Similarity=0.084  Sum_probs=88.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++++++|+|||.|..++.++-..| +.+++.+|.+...+...++..+..++ .+++++++++++...        ..
T Consensus        62 ~~~~~~~ilDiGsGaG~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~--------~~  131 (207)
T d1jsxa_          62 PYLQGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKL-ENIEPVQSRVEEFPS--------EP  131 (207)
T ss_dssp             GGCCSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEECCTTTSCC--------CS
T ss_pred             hhhcCCceeeeeccCCceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcCC-cceeeeccchhhhcc--------cc
Confidence            345678999999999999999998877 79999999999999999999999998 689999999976532        45


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +||+|+..+. .....+++.+.++++++|.+++
T Consensus       132 ~fD~V~sRA~-~~~~~ll~~~~~~l~~~g~~~~  163 (207)
T d1jsxa_         132 PFDGVISRAF-ASLNDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             CEEEEECSCS-SSHHHHHHHHTTSEEEEEEEEE
T ss_pred             ccceehhhhh-cCHHHHHHHHHHhcCCCcEEEE
Confidence            8999998764 4567888999999999999985

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=8.4e-10  Score=83.05  Aligned_cols=122  Identities=16%  Similarity=0.168  Sum_probs=91.9

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +.....+...++...++.+|||+.++.|.=+..+++... +++++++|+++..++..+++++..|.. ++.+...+....
T Consensus        87 QD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~  164 (284)
T d1sqga2          87 QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPS  164 (284)
T ss_dssp             CCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTH
T ss_pred             ccccccccccccCccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccc
Confidence            344555666667777889999999999999999998765 689999999999999999999999984 455554444322


Q ss_pred             HHHHhhcccCCCceeEEEEcCCC---------cc----------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADK---------DN----------------YVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~---------~~----------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ....      .+.||.|++|++.         .+                ....++.+.++|++||+||...+..
T Consensus       165 ~~~~------~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~  233 (284)
T d1sqga2         165 QWCG------EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  233 (284)
T ss_dssp             HHHT------TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             hhcc------cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence            1111      4689999999761         00                1456777788999999999776653

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=5.5e-12  Score=94.27  Aligned_cols=113  Identities=12%  Similarity=-0.025  Sum_probs=73.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCce-------------------------
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKI-------------------------   73 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i-------------------------   73 (187)
                      ++.++||+|||+|..++..+...  ..+|+++|.++.+++.++++++.....-..                         
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  131 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence            56799999999997765544332  358999999999999999988654321110                         


Q ss_pred             ----EEEeCCchHHHHHHhhcccCCCceeEEEEcCC-------CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836           74 ----DFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-------KDNYVNYHKRLIELVKVGGVIGYDNTLWG  134 (187)
Q Consensus        74 ----~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                          .+...|.....+ +.......++||+|+.-..       .+++..+++.+.++|||||++++.+....
T Consensus       132 ~~~~~~~~~Dv~~~~~-~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~  202 (263)
T d2g72a1         132 ARVKRVLPIDVHQPQP-LGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE  202 (263)
T ss_dssp             HHEEEEECCCTTSSST-TCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC
T ss_pred             hhhhccccccccCCCc-cccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Confidence                111222211000 0000001357999987543       23567889999999999999999776544

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=4.2e-10  Score=87.68  Aligned_cols=110  Identities=22%  Similarity=0.264  Sum_probs=91.5

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC--------------ceEEEeCC
Q 029836           14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH--------------KIDFREGP   79 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~--------------~i~~~~~d   79 (187)
                      +++..++.+|||..||+|.-++.++...+ ..+|+++|+++.+++.+++|++.++...              ++.+.+.|
T Consensus        40 ~~~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~D  118 (375)
T d2dula1          40 LLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDD  118 (375)
T ss_dssp             HHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESC
T ss_pred             HHHHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhh
Confidence            34556899999999999999997777665 5799999999999999999999887632              47788889


Q ss_pred             chHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           80 ALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +...+...      ...||+|.+|+. .....+++.+.+.++.||+|.+..+
T Consensus       119 a~~~~~~~------~~~fDvIDiDPf-Gs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         119 ANRLMAER------HRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HHHHHHHS------TTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhhhhHhh------cCcCCcccCCCC-CCcHHHHHHHHHHhccCCEEEEEec
Confidence            87766543      568999999974 4557899999999999999998654

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=5.9e-10  Score=84.98  Aligned_cols=122  Identities=17%  Similarity=0.256  Sum_probs=96.4

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +.....+...++...++.+|||+.+|.|.=+..++..+...+.++++|.++..+...++++++.+. .++.+...|+...
T Consensus       101 QD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~-~~i~~~~~d~~~~  179 (313)
T d1ixka_         101 QEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHI  179 (313)
T ss_dssp             CCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGG
T ss_pred             ecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh-hcccccccccccc
Confidence            344455566666667788999999999999999998887678999999999999999999999998 6788888887654


Q ss_pred             HHHHhhcccCCCceeEEEEcCCCc-------------------------ccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           84 LDQLIQDEKYHGTFDFVFVDADKD-------------------------NYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        84 l~~~~~~~~~~~~~D~v~~d~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                       +..      ...||.|++|++..                         .....+..+.+++||||.||...+..
T Consensus       180 -~~~------~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         180 -GEL------NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             -GGG------CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             -ccc------cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence             222      57899999997610                         01346677789999999999866543

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.04  E-value=1.3e-09  Score=79.72  Aligned_cols=103  Identities=14%  Similarity=0.155  Sum_probs=87.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ...+++|||||.|.-++.++-.+| +.+++.+|.+...+...+...++.++ .+++++++.+++......    ..++||
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p-~~~v~Lves~~KK~~FL~~v~~~L~L-~n~~i~~~R~E~~~~~~~----~~~~~D  143 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCHDRAETFGQRKD----VRESYD  143 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCTT----TTTCEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCC-CccceeecchHHHHHHHHHHHHHhCC-CCcEEEeehhhhcccccc----ccccce
Confidence            467999999999999999998877 79999999999999999999999999 689999999976532110    046899


Q ss_pred             EEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           99 FVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +|+..+. .....+++.+.+++++||.+++
T Consensus       144 ~v~sRAv-a~l~~ll~~~~~~l~~~g~~i~  172 (239)
T d1xdza_         144 IVTARAV-ARLSVLSELCLPLVKKNGLFVA  172 (239)
T ss_dssp             EEEEECC-SCHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEhhh-hCHHHHHHHHhhhcccCCEEEE
Confidence            9999874 4567889999999999999985

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.4e-09  Score=82.08  Aligned_cols=92  Identities=17%  Similarity=0.239  Sum_probs=74.5

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      .+...++...++.+|||+.+|.|+-+..++..+...++++++|+++..++.+++++++.|. .++.+...|+....+...
T Consensus        84 ~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~-~~~~~~~~d~~~~~~~~~  162 (293)
T d2b9ea1          84 CLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDP  162 (293)
T ss_dssp             GHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCG
T ss_pred             cccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc-cceeeeehhhhhhccccc
Confidence            3444455566788999999999999999988776678999999999999999999999998 689999998875433211


Q ss_pred             hcccCCCceeEEEEcCC
Q 029836           89 QDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~  105 (187)
                          ..+.||.|++|++
T Consensus       163 ----~~~~fD~VL~DaP  175 (293)
T d2b9ea1         163 ----RYHEVHYILLDPS  175 (293)
T ss_dssp             ----GGTTEEEEEECCC
T ss_pred             ----ccceeeEEeecCc
Confidence                0357999999976

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.94  E-value=1.8e-09  Score=77.92  Aligned_cols=109  Identities=17%  Similarity=0.191  Sum_probs=84.4

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            2 MTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         2 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      .+.+...++|..++...++.+|||.|||+|.....+.+..+....++++|+++..+..          ..+..+++++..
T Consensus         2 ~TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~   71 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFL   71 (223)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGG
T ss_pred             CCCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehh
Confidence            4677888888888888888999999999999988888776656889999999876432          245678888876


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCCCc--------------------------------ccHHHHHHHHhcccCCeEEEE
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDADKD--------------------------------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~~~--------------------------------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ....        ...||+|+.+++..                                -+..+++.+.++|++||.+++
T Consensus        72 ~~~~--------~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~  142 (223)
T d2ih2a1          72 LWEP--------GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  142 (223)
T ss_dssp             GCCC--------SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccc--------ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence            5432        56899999886510                                123567788899999998765

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.90  E-value=1.8e-09  Score=79.41  Aligned_cols=96  Identities=14%  Similarity=0.136  Sum_probs=75.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      +..+|||||||+|..+..++++.| ..+++..|. |+.       ++..+..++++++.+|..+.+          ...|
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v-------i~~~~~~~ri~~~~gd~~~~~----------p~~D  141 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQV-------IENAPPLSGIEHVGGDMFASV----------PQGD  141 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHH-------HTTCCCCTTEEEEECCTTTCC----------CCEE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecc-hhh-------hhccCCCCCeEEecCCccccc----------ccce
Confidence            457999999999999999999988 789999998 333       334455689999999986533          2459


Q ss_pred             EEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           99 FVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        99 ~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ++++-..     .+.....++.+.+.|+|||.+++.+...
T Consensus       142 ~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~  181 (244)
T d1fp1d2         142 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL  181 (244)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEe
Confidence            9987643     3446778999999999999888877654

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.86  E-value=4.8e-09  Score=80.30  Aligned_cols=115  Identities=14%  Similarity=0.068  Sum_probs=83.3

Q ss_pred             CHHHHHHHHHHH----hhcCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEE
Q 029836            4 SPDEAQFFSMLL----KLINAKNTMEIGVFTGYSLLATALAIP----DDGKILALDITKEHYEKGLPIIQKAGVAHKIDF   75 (187)
Q Consensus         4 ~~~~~~~l~~l~----~~~~~~~vLeiG~g~G~~~~~l~~~~~----~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~   75 (187)
                      ++....++..++    ...++.+|||.+||+|.....+...+.    ...+++++|+++.+++.|+.++...+.  +..+
T Consensus        98 P~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~  175 (328)
T d2f8la1          98 PDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTL  175 (328)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEE
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhh
Confidence            344555555544    334556899999999999888765432    235899999999999999999887765  5667


Q ss_pred             EeCCchHHHHHHhhcccCCCceeEEEEcCCCc---------------------ccHHHHHHHHhcccCCeEEEE
Q 029836           76 REGPALPLLDQLIQDEKYHGTFDFVFVDADKD---------------------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        76 ~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~---------------------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .++|.....+        ..+||+|+.+++..                     .+..+++.+.++|++||.+++
T Consensus       176 ~~~d~~~~~~--------~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~  241 (328)
T d2f8la1         176 LHQDGLANLL--------VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF  241 (328)
T ss_dssp             EESCTTSCCC--------CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             hccccccccc--------cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEE
Confidence            7777654322        56899999998721                     123478889999999997654

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.84  E-value=2.8e-09  Score=77.94  Aligned_cols=68  Identities=15%  Similarity=0.129  Sum_probs=56.2

Q ss_pred             HHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836           10 FFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus        10 ~l~~l~~---~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      ++..++.   ..+.++|||||||.|..|..+++.   +.++++||+++.+++.+++.+...   ++++++++|+.++
T Consensus         9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~   79 (235)
T d1qama_           9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQF   79 (235)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGC
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhc
Confidence            3444444   446789999999999999999986   468999999999999988866443   6899999999875

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.75  E-value=1.1e-08  Score=72.63  Aligned_cols=107  Identities=21%  Similarity=0.203  Sum_probs=67.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHH----hhCC---CCCEEEEEeCCchHHHHHHHHHH------------------HcCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATA----LAIP---DDGKILALDITKEHYEKGLPIIQ------------------KAGVA   70 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~----~~~~---~~~~v~~vd~~~~~~~~a~~~~~------------------~~~~~   70 (187)
                      ...++.+|+.+||++|--...++    +...   ...+++++|+++..++.|++..-                  +.+..
T Consensus        21 ~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~  100 (193)
T d1af7a2          21 RRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGP  100 (193)
T ss_dssp             HSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTT
T ss_pred             ccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCC
Confidence            34456699999999998554433    2211   13489999999999998874221                  11100


Q ss_pred             ------------CceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836           71 ------------HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        71 ------------~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                                  ..+++...+..+..+.      ..++||+|++-..     .+.....++.+.+.|+|||+|++
T Consensus       101 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l  169 (193)
T d1af7a2         101 HEGLVRVRQELANYVEFSSVNLLEKQYN------VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  169 (193)
T ss_dssp             SCSEEEECHHHHTTEEEEECCTTCSSCC------CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ccceeehHHHHHHHHHHhhhhccccccC------CCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                        1122222222211000      1368999999765     34456789999999999999986

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.74  E-value=7.9e-08  Score=67.29  Aligned_cols=106  Identities=11%  Similarity=0.062  Sum_probs=80.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ...++..++|..+|.|+-+..+++.   +++|+++|.+++++..+++.     ..+++.+++++..++-..+...+  .+
T Consensus        15 ~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~~--~~   84 (182)
T d1wg8a2          15 AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAALG--VE   84 (182)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHTT--CS
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHcC--CC
Confidence            3456789999999999999999875   57999999999999888753     23689999998876543332221  46


Q ss_pred             ceeEEEEcCCCc------------ccHHHHHHHHhcccCCeEEEEeCc
Q 029836           96 TFDFVFVDADKD------------NYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        96 ~~D~v~~d~~~~------------~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|.|++|....            .....++.....|++||.+++-..
T Consensus        85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence            899999996521            123466777889999999987553

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=7.9e-08  Score=71.61  Aligned_cols=97  Identities=16%  Similarity=0.084  Sum_probs=71.2

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI   88 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~   88 (187)
                      +-+-..+...+.++|||||+|.|..|..+++.   +.+++++|+++.++...++.+.......+++++++|+..+-    
T Consensus        11 ~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~----   83 (278)
T d1zq9a1          11 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD----   83 (278)
T ss_dssp             HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC----
T ss_pred             HHHHHHhCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh----
Confidence            33333344456779999999999999999987   46999999999999999998877666678999999997641    


Q ss_pred             hcccCCCceeEEEEcCCCcccHHHHHHHH
Q 029836           89 QDEKYHGTFDFVFVDADKDNYVNYHKRLI  117 (187)
Q Consensus        89 ~~~~~~~~~D~v~~d~~~~~~~~~~~~~~  117 (187)
                           ...++.|+...+..-....+..+.
T Consensus        84 -----~~~~~~vV~NLPY~Iss~il~~~~  107 (278)
T d1zq9a1          84 -----LPFFDTCVANLPYQISSPFVFKLL  107 (278)
T ss_dssp             -----CCCCSEEEEECCGGGHHHHHHHHH
T ss_pred             -----hhhhhhhhcchHHHHHHHHHHHHH
Confidence                 234566776665433344444443

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.72  E-value=1.4e-08  Score=74.62  Aligned_cols=95  Identities=16%  Similarity=0.176  Sum_probs=71.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      ..+|||||||.|..+..+++++| +.+++..|..+. +       +.....+++++..+|..+.+|          ..|+
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~v-i-------~~~~~~~r~~~~~~d~~~~~P----------~ad~  142 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYP-TIKGINFDLPHV-I-------EDAPSYPGVEHVGGDMFVSIP----------KADA  142 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECTTT-T-------TTCCCCTTEEEEECCTTTCCC----------CCSC
T ss_pred             CcEEEEecCCCcHHHHHHHHHCC-CCeEEEcccHHh-h-------hhcccCCceEEecccccccCC----------Ccce
Confidence            46899999999999999999998 799999999543 2       233445789999999876443          2344


Q ss_pred             EEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836          100 VFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus       100 v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +++-..     .+.....++++.+.|+|||.+++.+...
T Consensus       143 ~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~  181 (243)
T d1kyza2         143 VFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECIL  181 (243)
T ss_dssp             EECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEE
T ss_pred             EEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEe
Confidence            444321     3456789999999999999888776653

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.69  E-value=4e-08  Score=72.12  Aligned_cols=97  Identities=13%  Similarity=0.152  Sum_probs=74.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ....+|||||+|+|..+..+++++| ..+++..|. |+.       ++..+..++++++.+|..+.          ...+
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v-------i~~~~~~~rv~~~~gD~f~~----------~p~a  139 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQV-------VENLSGSNNLTYVGGDMFTS----------IPNA  139 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHH-------HTTCCCBTTEEEEECCTTTC----------CCCC
T ss_pred             cCceEEEEecCCccHHHHHHHHhCC-CCeEEEecC-HHH-------HHhCcccCceEEEecCcccC----------CCCC
Confidence            3457899999999999999999998 789999998 333       33445668999999998653          2357


Q ss_pred             eEEEEcCC-----CcccHHHHHHHHhcccCC---eEEEEeCcCC
Q 029836           98 DFVFVDAD-----KDNYVNYHKRLIELVKVG---GVIGYDNTLW  133 (187)
Q Consensus        98 D~v~~d~~-----~~~~~~~~~~~~~~L~~g---G~lv~~~~~~  133 (187)
                      |++++...     .+.....++.+.+.|+||   |.+++.+...
T Consensus       140 D~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~  183 (244)
T d1fp2a2         140 DAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI  183 (244)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred             cEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeec
Confidence            99987543     344577899999999998   6666655443

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=2e-07  Score=65.12  Aligned_cols=99  Identities=16%  Similarity=0.184  Sum_probs=70.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH--HHHhhcccCCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL--DQLIQDEKYHG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l--~~~~~~~~~~~   95 (187)
                      .+..+|||+||+.|.|+..+++..+..+.++++|..+..           .. +++.++++|..+..  ...... ....
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i-~~~~~~~~d~~~~~~~~~~~~~-~~~~   87 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PI-VGVDFLQGDFRDELVMKALLER-VGDS   87 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CC-TTEEEEESCTTSHHHHHHHHHH-HTTC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------cc-CCceEeecccccchhhhhhhhh-ccCc
Confidence            356799999999999999999877767899999987621           12 67899999885422  111111 1146


Q ss_pred             ceeEEEEcCCCc-------c-------cHHHHHHHHhcccCCeEEEEe
Q 029836           96 TFDFVFVDADKD-------N-------YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        96 ~~D~v~~d~~~~-------~-------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++|+|+.|+.+.       +       ....+..+.+.|++||.+|+-
T Consensus        88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K  135 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence            899999997621       0       134555667899999999975

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.59  E-value=4.7e-09  Score=77.12  Aligned_cols=76  Identities=9%  Similarity=0.094  Sum_probs=58.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..+.++|||||||+|..|..+++.   +.+|++||+++.+++.+++.+..   .++++++++|+.++-  +.     ...
T Consensus        27 ~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~D~l~~~--~~-----~~~   93 (245)
T d1yuba_          27 LKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQ--FP-----NKQ   93 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTT--CC-----CSS
T ss_pred             CCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhhh---ccchhhhhhhhhccc--cc-----cce
Confidence            446779999999999999999987   46899999999998887765532   268999999998752  10     345


Q ss_pred             eeEEEEcCC
Q 029836           97 FDFVFVDAD  105 (187)
Q Consensus        97 ~D~v~~d~~  105 (187)
                      ++.|+...+
T Consensus        94 ~~~vv~NLP  102 (245)
T d1yuba_          94 RYKIVGNIP  102 (245)
T ss_dssp             EEEEEEECC
T ss_pred             eeeEeeeee
Confidence            566666655

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=2.9e-08  Score=73.05  Aligned_cols=67  Identities=7%  Similarity=0.021  Sum_probs=53.5

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836           11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +-..+...+.+.|||||||.|..|..+++.   +.+++++|+++.+++..++.+..   .++++++++|+.++
T Consensus        13 Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~l~~   79 (252)
T d1qyra_          13 IVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMTF   79 (252)
T ss_dssp             HHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGGC
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhhh---ccchhHHhhhhhhh
Confidence            333444556789999999999999999975   46899999999999887764422   26899999999874

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.54  E-value=3.8e-08  Score=72.07  Aligned_cols=76  Identities=9%  Similarity=0.067  Sum_probs=64.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC--------CCceEEEeCCchHHHHHHhhccc
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV--------AHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~--------~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      .+|||..+|.|..+..++..   +++|+++|.+|......+.+++....        ..|++++++|+.+++...     
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~-----  161 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----  161 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-----
T ss_pred             CEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc-----
Confidence            48999999999999999976   57899999999988888877765432        247999999999988765     


Q ss_pred             CCCceeEEEEcCC
Q 029836           93 YHGTFDFVFVDAD  105 (187)
Q Consensus        93 ~~~~~D~v~~d~~  105 (187)
                       .++||+|++|+.
T Consensus       162 -~~~~DvIYlDPM  173 (250)
T d2oyra1         162 -TPRPQVVYLDPM  173 (250)
T ss_dssp             -SSCCSEEEECCC
T ss_pred             -CCCCCEEEECCC
Confidence             568999999986

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.49  E-value=2.9e-07  Score=72.66  Aligned_cols=118  Identities=14%  Similarity=0.088  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC------------CCEEEEEeCCchHHHHHHHHHHHcCCC
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPD------------DGKILALDITKEHYEKGLPIIQKAGVA   70 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~------------~~~v~~vd~~~~~~~~a~~~~~~~~~~   70 (187)
                      ++....+++-.++......+|+|-.||+|.....+.+.+..            ...+.++|+++.....|+-++--.+..
T Consensus       146 TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~  225 (425)
T d2okca1         146 TPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  225 (425)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             cchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence            45667777777777667789999999999999887765431            124899999999999999999887764


Q ss_pred             -CceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--------------------ccHHHHHHHHhcccCCeEEEE
Q 029836           71 -HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--------------------NYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        71 -~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--------------------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                       .+..+..+|+.+..+        ..+||+|+.+++..                    ....|+..+..+|++||.+++
T Consensus       226 ~~~~~i~~~d~l~~~~--------~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~i  296 (425)
T d2okca1         226 TDRSPIVCEDSLEKEP--------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  296 (425)
T ss_dssp             SSCCSEEECCTTTSCC--------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccceeecCchhhhhc--------ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEE
Confidence             345677787764322        56899999997610                    124588999999999997654

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=4.6e-06  Score=67.31  Aligned_cols=120  Identities=13%  Similarity=0.061  Sum_probs=84.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-----------------CCEEEEEeCCchHHHHHHHHHH
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPD-----------------DGKILALDITKEHYEKGLPIIQ   65 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~-----------------~~~v~~vd~~~~~~~~a~~~~~   65 (187)
                      ++....+++-.++......+|+|-.||+|.......+.+..                 ...+.++|+++.....|+-++-
T Consensus       148 TP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~  227 (524)
T d2ar0a1         148 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  227 (524)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             cccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence            45566777777777666779999999999998876654321                 1258999999999999999888


Q ss_pred             HcCCCCc----eEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC-----------------cccHHHHHHHHhcccCCe
Q 029836           66 KAGVAHK----IDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK-----------------DNYVNYHKRLIELVKVGG  124 (187)
Q Consensus        66 ~~~~~~~----i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~-----------------~~~~~~~~~~~~~L~~gG  124 (187)
                      -.+...+    ..+..++....-...      ..+||+|+.+++.                 .....|+..+.+.|++||
T Consensus       228 l~~~~~~i~~~~~~~~~~~l~~d~~~------~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gG  301 (524)
T d2ar0a1         228 LHDIEGNLDHGGAIRLGNTLGSDGEN------LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG  301 (524)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHT------SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred             hhcccccccccchhhhhhhhhhcccc------cccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccC
Confidence            7665322    233444443221111      4689999999861                 012458899999999999


Q ss_pred             EEEE
Q 029836          125 VIGY  128 (187)
Q Consensus       125 ~lv~  128 (187)
                      .+.+
T Consensus       302 r~ai  305 (524)
T d2ar0a1         302 RAAV  305 (524)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            7764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.99  E-value=8.9e-06  Score=56.13  Aligned_cols=105  Identities=18%  Similarity=0.195  Sum_probs=68.5

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccC
Q 029836           15 LKLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      +...+.++||-+|||. |..+..+++.+. ..+|+++|.+++.++.+++    .|...-+.....+..+.+.+..    .
T Consensus        23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~----lGa~~~i~~~~~~~~~~v~~~t----~   93 (174)
T d1jqba2          23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKF----YGATDILNYKNGHIEDQVMKLT----N   93 (174)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHH----HTCSEEECGGGSCHHHHHHHHT----T
T ss_pred             hCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHh----hCccccccccchhHHHHHHHHh----h
Confidence            3455678999999986 778888888764 3589999999988887764    3431111122223333333331    1


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ...+|+||-...   ....++.+.+.++|+|.+++-..
T Consensus        94 g~G~D~vid~~g---~~~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          94 GKGVDRVIMAGG---GSETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             TSCEEEEEECSS---CTTHHHHHHHHEEEEEEEEECCC
T ss_pred             ccCcceEEEccC---CHHHHHHHHHHHhcCCEEEEEee
Confidence            346999875432   23456778889999999998554

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=9.2e-05  Score=50.49  Aligned_cols=104  Identities=11%  Similarity=0.048  Sum_probs=66.9

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-CchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~   94 (187)
                      ..+.++||-+|+|. |..+..+++..+ ..+|+++|.+++.++.|++    .|. +.+..... +..+....+....  .
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~----~Ga-~~~~~~~~~~~~~~~~~~~~~~--g   95 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKE----IGA-DLVLQISKESPQEIARKVEGQL--G   95 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTC-SEEEECSSCCHHHHHHHHHHHH--T
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHH----hCC-cccccccccccccccccccccC--C
Confidence            34567999999974 446666777764 4589999999998887765    343 22222222 2222222221111  4


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..+|+||--.   .....++.+.+++++||.+++-..
T Consensus        96 ~g~Dvvid~~---G~~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          96 CKPEVTIECT---GAEASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             SCCSEEEECS---CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCceEEEecc---CCchhHHHHHHHhcCCCEEEEEec
Confidence            5789988533   235678889999999999997553

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.88  E-value=2.2e-05  Score=59.35  Aligned_cols=60  Identities=5%  Similarity=-0.077  Sum_probs=49.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL   83 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   83 (187)
                      +...|||||+|.|..|..++.... ..+++++|+++...+..++.+.    ..+++++++|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchhhc
Confidence            456899999999999999987632 3589999999999988877653    26899999998754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.88  E-value=5.6e-05  Score=52.96  Aligned_cols=107  Identities=14%  Similarity=0.162  Sum_probs=71.5

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEE--EeCCchHHHHHHhhcc
Q 029836           15 LKLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDF--REGPALPLLDQLIQDE   91 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~~l~~~~~~~   91 (187)
                      +...+.++||.+|||. |..+..+++... ..+|+++|.+++.++.|++    .|.  ...+  ...+..+.+.++..  
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~----~Ga--~~~~~~~~~~~~~~i~~~t~--   91 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA----QGF--EIADLSLDTPLHEQIAALLG--   91 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTC--EEEETTSSSCHHHHHHHHHS--
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhh----ccc--cEEEeCCCcCHHHHHHHHhC--
Confidence            4556778999999997 657777887765 5799999999998887765    343  1111  12233333333321  


Q ss_pred             cCCCceeEEEEcCCC------------cccHHHHHHHHhcccCCeEEEEeCcC
Q 029836           92 KYHGTFDFVFVDADK------------DNYVNYHKRLIELVKVGGVIGYDNTL  132 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                        ...+|++|-....            ......++.+.+.+++||.+++-.+.
T Consensus        92 --g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~  142 (195)
T d1kola2          92 --EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  142 (195)
T ss_dssp             --SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             --CCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence              3478998843221            12357899999999999999987653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.87  E-value=2.4e-05  Score=54.15  Aligned_cols=105  Identities=12%  Similarity=0.097  Sum_probs=66.1

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .++++||-+|+| .|..+..+++.++ ..+|+++|.+++.++.+++    .|...-+.....+..+......+.. ....
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~i~~~~-~~~g  100 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGADLTLNRRETSVEERRKAIMDIT-HGRG  100 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHHHHT-TTSC
T ss_pred             CCCCEEEEECCCccchhheecccccc-ccccccccccccccccccc----ccceEEEeccccchHHHHHHHHHhh-CCCC
Confidence            456899999987 3667788888864 3589999999999887765    3431111112233333322222111 1346


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|+||-...   ....++.+.+.+++||.+++-..
T Consensus       101 ~Dvvid~vG---~~~~~~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2         101 ADFILEATG---DSRALLEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             EEEEEECSS---CTTHHHHHHHHEEEEEEEEECCC
T ss_pred             ceEEeecCC---chhHHHHHHHHhcCCCEEEEEee
Confidence            999884332   23456778899999999987543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.85  E-value=3.4e-05  Score=52.95  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=66.8

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ...+.++||-+|+|. |..+..+++..+ ...++.+|.++..++.+++    .|..   +++.-+..+....+.+-  .+
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~--t~   94 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ----LGAT---HVINSKTQDPVAAIKEI--TD   94 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHH--TT
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHH----cCCe---EEEeCCCcCHHHHHHHH--cC
Confidence            344667999999874 335666777765 4688999999988887765    3432   23332222333322211  14


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +.+|+||-..   .....++.+.++++++|.+++-..
T Consensus        95 gg~D~vid~~---G~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          95 GGVNFALEST---GSPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             SCEEEEEECS---CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCcEEEEcC---CcHHHHHHHHhcccCceEEEEEee
Confidence            6899988543   235677888999999999987543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.85  E-value=0.00014  Score=49.37  Aligned_cols=102  Identities=10%  Similarity=0.090  Sum_probs=67.2

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC----CchHHHHHHhhcc
Q 029836           17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG----PALPLLDQLIQDE   91 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~----d~~~~l~~~~~~~   91 (187)
                      ..+.++||-+|+| .|..+..+++..  +++|+++|.+++.++.+++    .+.  ...+...    +..+....+... 
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~----~ga--~~~~~~~~~~~~~~~~~~~~~~~-   94 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN----CGA--DVTLVVDPAKEEESSIIERIRSA-   94 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTC--SEEEECCTTTSCHHHHHHHHHHH-
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHH----cCC--cEEEeccccccccchhhhhhhcc-
Confidence            4467899999988 666777788875  4799999999999888776    232  2223221    112222222211 


Q ss_pred             cCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           92 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        92 ~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                       ..+.+|+||-..   .....++.+.+.++++|.+++-..
T Consensus        95 -~g~g~D~vid~~---g~~~~~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          95 -IGDLPNVTIDCS---GNEKCITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             -SSSCCSEEEECS---CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred             -cccCCceeeecC---CChHHHHHHHHHHhcCCceEEEec
Confidence             135789887533   235678888899999999997543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=1.3e-05  Score=54.77  Aligned_cols=101  Identities=16%  Similarity=0.073  Sum_probs=65.1

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ...+.++||-+|+| .|..+..+++.+  +++++++|.+++.++.+++    .|. +. .+...+..+.....      .
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~----lGa-~~-~i~~~~~~~~~~~~------~   89 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK----MGA-DH-YIATLEEGDWGEKY------F   89 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTC-SE-EEEGGGTSCHHHHS------C
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhc----cCC-cE-EeeccchHHHHHhh------h
Confidence            34567899999998 667777788775  5799999999998887765    343 21 22111112233333      5


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +.+|+++..... .....++.+.+.++++|.+++-..
T Consensus        90 ~~~d~vi~~~~~-~~~~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2          90 DTFDLIVVCASS-LTDIDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             SCEEEEEECCSC-STTCCTTTGGGGEEEEEEEEECCC
T ss_pred             cccceEEEEecC-CccchHHHHHHHhhccceEEEecc
Confidence            689988753221 111124567889999999987543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.76  E-value=8.9e-06  Score=58.84  Aligned_cols=100  Identities=8%  Similarity=0.009  Sum_probs=62.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      +..+|+|+|||.|.|+.+++...+ ...+.++++--...+. .......+. +-+++...+....++        .+..|
T Consensus        66 ~~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv~~l~--------~~~~D  134 (257)
T d2p41a1          66 PEGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDVFFIP--------PERCD  134 (257)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCTTTSC--------CCCCS
T ss_pred             CCCeEEEecCCCChHHHHHHhhcC-CCceeEEEecCccccC-Ccccccccc-ccccchhhhhHHhcC--------CCcCC
Confidence            445899999999999999887643 4677887773111000 000001111 234555554433332        56899


Q ss_pred             EEEEcCCC---------cccHHHHHHHHhcccCCeEEEEe
Q 029836           99 FVFVDADK---------DNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        99 ~v~~d~~~---------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|++|..+         ......++.+.+.|+|||-+++.
T Consensus       135 ~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK  174 (257)
T d2p41a1         135 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  174 (257)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             EEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence            99999642         22346777788999999998874

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.70  E-value=0.00017  Score=48.84  Aligned_cols=101  Identities=18%  Similarity=0.119  Sum_probs=64.0

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccC
Q 029836           15 LKLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      +...+.++||-+|+| .|..+..+++..  +.+|+++|.+++.++.+++    .|..   .++..+..+....+...   
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~---   90 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARK----LGAS---LTVNARQEDPVEAIQRD---   90 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHH---
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhc----cCcc---ccccccchhHHHHHHHh---
Confidence            345567899999987 455667777775  4799999999988877654    4432   22332222333332221   


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ...+|.++.+..   ....++.+.+.|++||.+++-.
T Consensus        91 ~~g~~~~i~~~~---~~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          91 IGGAHGVLVTAV---SNSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             HSSEEEEEECCS---CHHHHHHHHTTEEEEEEEEECC
T ss_pred             hcCCcccccccc---cchHHHHHHHHhcCCcEEEEEE
Confidence            234555554432   2456788899999999998754

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.62  E-value=0.00021  Score=48.50  Aligned_cols=105  Identities=14%  Similarity=0.164  Sum_probs=72.7

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      +|.+|+-||+| .|..++..+..+  +++|+.+|.+++.++..+..+..     +++....+.......+       ...
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~-------~~a   96 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAV-------AEA   96 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHH-------HTC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhh-------ccC
Confidence            58899999998 466777788887  58999999999998887776643     5666666654443333       357


Q ss_pred             eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCccc
Q 029836           98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGGSV  137 (187)
Q Consensus        98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~  137 (187)
                      |+|+--..   +....-.-+++.+.+|||.++|=-.+...|..
T Consensus        97 DivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~~  139 (168)
T d1pjca1          97 DLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCV  139 (168)
T ss_dssp             SEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSB
T ss_pred             cEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEeecCCCCcc
Confidence            99986543   22222334677889999999974444444443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00013  Score=49.86  Aligned_cols=99  Identities=16%  Similarity=0.085  Sum_probs=64.2

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..+.++||-+|+  +.|..++.+++..  +.++++++.+++..+.+++    .|...   ++.-...++.+.+.... ..
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~---vi~~~~~~~~~~i~~~t-~~   95 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHE---VFNHREVNYIDKIKKYV-GE   95 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSE---EEETTSTTHHHHHHHHH-CT
T ss_pred             CCCCCEEEEEecccccccccccccccc--Ccccccccccccccccccc----cCccc---ccccccccHHHHhhhhh-cc
Confidence            346679999995  5677888888886  4789999988877666553    55422   22222222333322111 14


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+|+|+-...    ...++.+.+.|+++|.++.-
T Consensus        96 ~g~d~v~d~~g----~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          96 KGIDIIIEMLA----NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             TCEEEEEESCH----HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCceEEeeccc----HHHHHHHHhccCCCCEEEEE
Confidence            57998875332    35688888999999999863

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.57  E-value=0.00046  Score=47.19  Aligned_cols=102  Identities=19%  Similarity=0.261  Sum_probs=68.6

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC-chH-HHHHHhhcccC
Q 029836           17 LINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP-ALP-LLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~-~l~~~~~~~~~   93 (187)
                      ..+.++||-+|||. |..++.+++.+. ..+|+.+|.+++.++.+++    .|...-+.....+ ... ......     
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~~-----   95 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITELT-----   95 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHH-----
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHH----hCCCcccCCccchhhhhhhHhhhh-----
Confidence            44568999999987 788888998875 5789999999998877765    4442212112222 111 122221     


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                      .+.+|++|--.   .....++.+.+.+++| |.+++-..
T Consensus        96 ~~G~d~vie~~---G~~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          96 AGGVDYSLDCA---GTAQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             TSCBSEEEESS---CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             cCCCcEEEEec---ccchHHHHHHHHhhcCCeEEEecCC
Confidence            46799998532   3466788899999996 99987544

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.33  E-value=0.00065  Score=45.92  Aligned_cols=104  Identities=16%  Similarity=0.077  Sum_probs=67.8

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccC
Q 029836           16 KLINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ...++++||-+|+  +.|..+..+++... ..+|+.+|.+++..+.+++    .|..   .++..+..++........ .
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~~~~-~   94 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGAD---YVINASMQDPLAEIRRIT-E   94 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHT-T
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHH----cCCc---eeeccCCcCHHHHHHHHh-h
Confidence            3456789999996  35666777777654 4799999999988877765    3431   233333333433333221 1


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+.+|+|+-..   .-...++.+.+.+++||.+++-..
T Consensus        95 ~~~~d~vid~~---g~~~~~~~a~~~l~~~G~iv~~G~  129 (170)
T d1jvba2          95 SKGVDAVIDLN---NSEKTLSVYPKALAKQGKYVMVGL  129 (170)
T ss_dssp             TSCEEEEEESC---CCHHHHTTGGGGEEEEEEEEECCS
T ss_pred             cccchhhhccc---ccchHHHhhhhhcccCCEEEEecc
Confidence            35699887543   335667788899999999987543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.33  E-value=0.0018  Score=43.82  Aligned_cols=100  Identities=10%  Similarity=-0.012  Sum_probs=63.7

Q ss_pred             cCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVFTGY-SLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~-~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .+.++||-+|+|... .+..+++... ..+++++|.+++.++.+++    .+. .  .++..+. +......+.. ....
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~----~ga-~--~~i~~~~-~~~~~~~~~~-~~~g  100 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGA-D--HVVDARR-DPVKQVMELT-RGRG  100 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTC-S--EEEETTS-CHHHHHHHHT-TTCC
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhh----ccc-c--eeecCcc-cHHHHHHHhh-CCCC
Confidence            456799999987544 5566776654 5789999999988777664    333 1  2333222 2222221111 1346


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|+||-..   .....++...+.+++||.+++-.
T Consensus       101 ~d~vid~~---g~~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         101 VNVAMDFV---GSQATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEEEEESS---CCHHHHHHGGGGEEEEEEEEECC
T ss_pred             ceEEEEec---CcchHHHHHHHHHhCCCEEEEEe
Confidence            99888643   23456888899999999999754

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.21  E-value=0.00076  Score=45.57  Aligned_cols=91  Identities=22%  Similarity=0.289  Sum_probs=57.0

Q ss_pred             CEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           21 KNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        21 ~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      ++|+-||||. |.+....+.......+|+++|.+++.++.+++.    +.   +.....+.... .        ....|+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~~-~--------~~~~dl   65 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKV-E--------DFSPDF   65 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGG-G--------GTCCSE
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhhh-h--------cccccc
Confidence            3688899864 443333233222246899999999888777652    22   11112222111 1        235799


Q ss_pred             EEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836          100 VFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus       100 v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |++..+.......++.+.+.++++.+++
T Consensus        66 Iila~p~~~~~~vl~~l~~~~~~~~ii~   93 (171)
T d2g5ca2          66 VMLSSPVRTFREIAKKLSYILSEDATVT   93 (171)
T ss_dssp             EEECSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             ccccCCchhhhhhhhhhhcccccccccc
Confidence            9988777777888888888888887665

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.21  E-value=0.001  Score=45.28  Aligned_cols=103  Identities=13%  Similarity=0.139  Sum_probs=62.8

Q ss_pred             hhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc--hHHHHHHhhccc
Q 029836           16 KLINAKNTMEIGVFTGY-SLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA--LPLLDQLIQDEK   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~-~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~~l~~~~~~~~   92 (187)
                      ...+.++||-+|+|... .+..+++... ..+|+++|.+++.++.+++    .|...-+.....|.  .+.....     
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~----lGa~~~i~~~~~d~~~~~~~~~~-----   93 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDKPIYEVICEK-----   93 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHH-----
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHH----cCCcEEEcCCCchhHHHHHHHHh-----
Confidence            34567899999998544 5556677654 5799999999999988865    44422222222231  1222222     


Q ss_pred             CCCceeEEEEcCCCcccHHHHHHHHhcccC-CeEEEEeCc
Q 029836           93 YHGTFDFVFVDADKDNYVNYHKRLIELVKV-GGVIGYDNT  131 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~-gG~lv~~~~  131 (187)
                      ..+.+|.+|....   ....++.....+++ +|.+++-..
T Consensus        94 ~~~G~d~vid~~g---~~~~~~~~~~~~~~~~G~~v~vG~  130 (174)
T d1p0fa2          94 TNGGVDYAVECAG---RIETMMNALQSTYCGSGVTVVLGL  130 (174)
T ss_dssp             TTSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             cCCCCcEEEEcCC---CchHHHHHHHHHHHhcCceEEEEE
Confidence            1467999986542   34555555655554 588887544

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.16  E-value=0.0012  Score=44.31  Aligned_cols=100  Identities=16%  Similarity=0.099  Sum_probs=62.6

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ...+.++||-+|+|. |..+..+++..  +.++++++.+++.++.+++    .|...-+.....+..+.+...      .
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~------~   91 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK------V   91 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH------H
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhcccc------c
Confidence            455678999999875 44555566664  4689999999998877655    444211111122333333333      2


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +.+|.++.+..   ....++...+.+++||.+++-.
T Consensus        92 ~~~~~~v~~~~---~~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          92 GGVHAAVVTAV---SKPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             SSEEEEEESSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCceEEeecC---CHHHHHHHHHHhccCCceEecc
Confidence            34455555542   3567888899999999999754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.07  E-value=0.0034  Score=42.67  Aligned_cols=104  Identities=11%  Similarity=0.141  Sum_probs=61.7

Q ss_pred             hcCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc-hHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIGVFTG-YSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA-LPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G-~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~~   94 (187)
                      ..+.++|+-+|+|.. ..+..+++... ..+|+++|.+++.++.|++.    |...-+.....+. .+.......    .
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~----GA~~~in~~~~~~~~~~~~~~~~----g   97 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAV----GATECISPKDSTKPISEVLSEMT----G   97 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHHH----T
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhc----CCcEEECccccchHHHHHHHHhc----c
Confidence            345679999999744 46666777764 57999999999999988773    3211121122221 222222111    4


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHh-cccCCeEEEEeCcC
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIE-LVKVGGVIGYDNTL  132 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~-~L~~gG~lv~~~~~  132 (187)
                      ..+|.++....   ....++.... +.+.+|.+++-...
T Consensus        98 ~G~d~vi~~~g---~~~~~~~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2          98 NNVGYTFEVIG---HLETMIDALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             SCCCEEEECSC---CHHHHHHHHTTSCTTTCEEEECSCC
T ss_pred             ccceEEEEeCC---chHHHHHHHHHhhcCCeEEEEEEcc
Confidence            57998887543   2344444444 44555888875543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.0069  Score=40.57  Aligned_cols=97  Identities=14%  Similarity=0.178  Sum_probs=63.0

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ...+.++||-+|+| .|..+..+++..  +.+++++|.+++..+.+++    .|..   .++...-.+.....      .
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~----lGad---~~i~~~~~~~~~~~------~   91 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAH------L   91 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTT------T
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhc----cCCc---EEEECchhhHHHHh------c
Confidence            45567899999986 466777788876  4788899999988776654    4431   23332222222221      4


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +.+|.++-......   .++.+.++++++|.+++-.
T Consensus        92 ~~~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          92 KSFDFILNTVAAPH---NLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             TCEEEEEECCSSCC---CHHHHHTTEEEEEEEEECC
T ss_pred             CCCceeeeeeecch---hHHHHHHHHhcCCEEEEec
Confidence            57999886543222   2556778999999998744

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.0017  Score=44.07  Aligned_cols=101  Identities=15%  Similarity=0.163  Sum_probs=63.0

Q ss_pred             hcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIGVF--TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g--~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..+.++||-.|++  .|.....+++..  +++|++++.+++..+.+++    .|...-+.....|..+.+.++.    ..
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~----lGa~~vi~~~~~d~~~~v~~~t----~g   95 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEIT----GG   95 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TT
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHh----cCCeEEEECCCCCHHHHHHHHh----CC
Confidence            3456799998655  566777888875  5899999999998877664    4542112222233333333331    13


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..+|+|+--...    +.+......++++|.+++-..
T Consensus        96 ~g~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~g~  128 (179)
T d1qora2          96 KKVRVVYDSVGR----DTWERSLDCLQRRGLMVSFGN  128 (179)
T ss_dssp             CCEEEEEECSCG----GGHHHHHHTEEEEEEEEECCC
T ss_pred             CCeEEEEeCccH----HHHHHHHHHHhcCCeeeeccc
Confidence            568876643322    246678889999998876433

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.83  E-value=0.0015  Score=44.53  Aligned_cols=98  Identities=14%  Similarity=0.111  Sum_probs=61.8

Q ss_pred             hcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836           17 LINAKNTMEIG--VFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH   94 (187)
Q Consensus        17 ~~~~~~vLeiG--~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~   94 (187)
                      ..+.++||-.|  .+.|..+..+++..  +.+++++..+++..+.++    +.|.. .  ++.-+..++...+.+.. ..
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~----~~Ga~-~--vi~~~~~~~~~~v~~~t-~~   92 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLS----RLGVE-Y--VGDSRSVDFADEILELT-DG   92 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH----TTCCS-E--EEETTCSTHHHHHHHHT-TT
T ss_pred             CCCCCEEEEECCCCCcccccchhhccc--cccceeeecccccccccc----ccccc-c--cccCCccCHHHHHHHHh-CC
Confidence            34567899877  45667788888876  578888888877665544    45552 2  22222223333332211 13


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..+|+||--..    .+.++.+.+.|+++|.++.
T Consensus        93 ~g~d~v~d~~g----~~~~~~~~~~l~~~G~~v~  122 (183)
T d1pqwa_          93 YGVDVVLNSLA----GEAIQRGVQILAPGGRFIE  122 (183)
T ss_dssp             CCEEEEEECCC----THHHHHHHHTEEEEEEEEE
T ss_pred             CCEEEEEeccc----chHHHHHHHHhcCCCEEEE
Confidence            57999995432    2467788899999999986

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.78  E-value=0.0046  Score=41.78  Aligned_cols=102  Identities=15%  Similarity=0.172  Sum_probs=60.6

Q ss_pred             hcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           17 LINAKNTMEIGVFTGY-SLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~-~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      ..+.++||-+|+|.+. +...+++... ..+|+++|.+++..+.+++    .|..  ..+...+..+......... ..+
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~----~Ga~--~~i~~~~~~~~~~~~~~~~-~~~   97 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKE----VGAT--ECVNPQDYKKPIQEVLTEM-SNG   97 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHHHHH-TTS
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHH----hCCe--eEEecCCchhHHHHHHHHH-hcC
Confidence            4566799999986444 6666777764 5899999999999887765    3332  1222222212211111111 146


Q ss_pred             ceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEe
Q 029836           96 TFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYD  129 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~  129 (187)
                      .+|++|-...   ....++.+...+++| |.+++-
T Consensus        98 G~D~vid~~G---~~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          98 GVDFSFEVIG---RLDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             CBSEEEECSC---CHHHHHHHHHHBCTTTCEEEEC
T ss_pred             CCCEEEecCC---chhHHHHHHHHHhcCCcceEEe
Confidence            8998886532   345566667777775 666653

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.72  E-value=0.0049  Score=41.92  Aligned_cols=100  Identities=11%  Similarity=0.055  Sum_probs=62.9

Q ss_pred             hhcCCCEEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccC
Q 029836           16 KLINAKNTMEIGVFT--GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~--G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      +..+.++||-.|++.  |..+..+++..  +++|+++..+++..+.+++    .|...-+.....+..+......    .
T Consensus        26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~~~~~~----~   95 (182)
T d1v3va2          26 GVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKA----S   95 (182)
T ss_dssp             CCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHH----C
T ss_pred             CCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHh----hhhhhhcccccccHHHHHHHHh----h
Confidence            345678999888754  55677788875  5899999998877655544    4542112212222222222221    1


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+.+|+||-...    .+.++.+++.|++||.++.-
T Consensus        96 ~~Gvd~v~D~vG----~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          96 PDGYDCYFDNVG----GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             TTCEEEEEESSC----HHHHHHHGGGEEEEEEEEEC
T ss_pred             cCCCceeEEecC----chhhhhhhhhccCCCeEEee
Confidence            457999874321    45788999999999999874

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.66  E-value=0.0038  Score=42.05  Aligned_cols=100  Identities=18%  Similarity=0.285  Sum_probs=61.9

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe--CCchHHHHHHhhccc
Q 029836           16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE--GPALPLLDQLIQDEK   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~   92 (187)
                      ...+.++||-+|+| .|..+..+++.+. ...|+++|.+++..+.+++    .|...-+....  .+....+....    
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~----lGa~~~i~~~~~~~~~~~~~~~~~----   95 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKE----FGATECINPQDFSKPIQEVLIEMT----   95 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----HTCSEEECGGGCSSCHHHHHHHHT----
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHH----hCCcEEEeCCchhhHHHHHHHHHc----
Confidence            34567899988876 3446666777764 5789999999998877664    44422111111  11112222221    


Q ss_pred             CCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                       .+.+|+||-..   .....++.+..++++||.+++
T Consensus        96 -~~g~D~vid~~---G~~~~~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2          96 -DGGVDYSFECI---GNVKVMRAALEACHKGWGVSV  127 (176)
T ss_dssp             -TSCBSEEEECS---CCHHHHHHHHHTBCTTTCEEE
T ss_pred             -CCCCcEeeecC---CCHHHHHHHHHhhcCCceeEE
Confidence             46799998643   235677788889999876654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.60  E-value=0.01  Score=39.87  Aligned_cols=95  Identities=16%  Similarity=0.167  Sum_probs=61.0

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccC
Q 029836           16 KLINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~   93 (187)
                      ...+.++||-.|.  +.|..+..+++..  +.+|++++.+++..+.+++    .|.. .+ +   |..+.......    
T Consensus        24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~----lGa~-~~-i---~~~~~~~~~~~----   88 (171)
T d1iz0a2          24 QARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAE-EA-A---TYAEVPERAKA----   88 (171)
T ss_dssp             TCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCS-EE-E---EGGGHHHHHHH----
T ss_pred             CCCCCCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccc----cccc-ee-e---ehhhhhhhhhc----
Confidence            3456789999884  4466778888876  4799999999887776654    4542 21 1   22222222211    


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ...+|+||- ..-    ..++.+.+.|+++|.++.-.
T Consensus        89 ~~g~D~v~d-~~G----~~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          89 WGGLDLVLE-VRG----KEVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             TTSEEEEEE-CSC----TTHHHHHTTEEEEEEEEEC-
T ss_pred             ccccccccc-ccc----hhHHHHHHHHhcCCcEEEEe
Confidence            457998874 321    23577889999999998643

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.56  E-value=0.0083  Score=40.99  Aligned_cols=96  Identities=13%  Similarity=0.100  Sum_probs=61.7

Q ss_pred             CEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           21 KNTMEIG--VFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        21 ~~vLeiG--~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      ++||-.|  .|.|..++.+++.++ ...|+++..+++....+.   +..|...-+.....+..+.+....     .+.+|
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~G-a~~vi~~~~~~e~~~~l~---~~~gad~vi~~~~~~~~~~~~~~~-----~~GvD  102 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLG-CSRVVGICGTQEKCLFLT---SELGFDAAVNYKTGNVAEQLREAC-----PGGVD  102 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTT-CSEEEEEESSHHHHHHHH---HHSCCSEEEETTSSCHHHHHHHHC-----TTCEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcC-CcceecccchHHHHhhhh---hcccceEEeeccchhHHHHHHHHh-----ccCce
Confidence            6799877  567889999999875 457887777765544332   233432222323334444444442     45799


Q ss_pred             EEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           99 FVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +||=...    .+.++...+.|+++|.++.-
T Consensus       103 vv~D~vG----g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         103 VYFDNVG----GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             EEEESSC----HHHHHHHHTTEEEEEEEEEC
T ss_pred             EEEecCC----chhHHHHhhhccccccEEEe
Confidence            9973221    45688889999999999863

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.40  E-value=0.019  Score=36.73  Aligned_cols=92  Identities=16%  Similarity=0.135  Sum_probs=58.6

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCcee
Q 029836           22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGTFD   98 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~D   98 (187)
                      +|+-+|+  |..+..+++.+. .+..|+.+|.+++.++.+.+.+       .+.+++||+.+  ++....     -...|
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~-----i~~a~   67 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAG-----IEDAD   67 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTT-----TTTCS
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcC-----hhhhh
Confidence            5777765  778888776653 2578999999999887665422       45788888865  454442     35678


Q ss_pred             EEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           99 FVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      .+++-.......-......+.+.+.-+++
T Consensus        68 ~vv~~t~~d~~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          68 MYIAVTGKEEVNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             hhcccCCcHHHHHHHHHHHHHcCCceEEE
Confidence            88875433323333344445667765554

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.34  E-value=0.0014  Score=46.86  Aligned_cols=51  Identities=12%  Similarity=0.243  Sum_probs=40.0

Q ss_pred             EEEeCCchHHHHHHhhcccCCCceeEEEEcCCC----------cc-------cHHHHHHHHhcccCCeEEEEe
Q 029836           74 DFREGPALPLLDQLIQDEKYHGTFDFVFVDADK----------DN-------YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        74 ~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~----------~~-------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++++||..+.++.+.     ++++|+|+.|++.          ..       ....++++.+.|++||.+++.
T Consensus         6 ~i~~gDcle~l~~lp-----d~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~   73 (256)
T d1g60a_           6 KIHQMNCFDFLDQVE-----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (256)
T ss_dssp             SEEECCHHHHHHHSC-----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCc-----CCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence            588999999999885     6789999999871          11       234667788999999988754

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.30  E-value=0.0084  Score=39.94  Aligned_cols=86  Identities=12%  Similarity=0.108  Sum_probs=55.2

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836           22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v  100 (187)
                      +|.-||+  |..+..+++.+. .+.+|++.|.+++..+.+++    .+.-+   ....+. +.          -...|+|
T Consensus         2 kI~iIG~--G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~~~---~~~~~~-~~----------~~~~DiI   61 (165)
T d2f1ka2           2 KIGVVGL--GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQLVD---EAGQDL-SL----------LQTAKII   61 (165)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTSCS---EEESCG-GG----------GTTCSEE
T ss_pred             EEEEEee--cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhccc---eeeeec-cc----------ccccccc
Confidence            5777877  444444443331 25799999999887766544    33211   111222 22          2357999


Q ss_pred             EEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836          101 FVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus       101 ~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      ++..+.......++.+.+.++++.+++
T Consensus        62 ilavp~~~~~~vl~~l~~~l~~~~iv~   88 (165)
T d2f1ka2          62 FLCTPIQLILPTLEKLIPHLSPTAIVT   88 (165)
T ss_dssp             EECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             cccCcHhhhhhhhhhhhhhccccccee
Confidence            987766677788889989999998776

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.28  E-value=0.0064  Score=41.52  Aligned_cols=111  Identities=20%  Similarity=0.130  Sum_probs=65.0

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC-----CceEEEeCCc-----------
Q 029836           18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-----HKIDFREGPA-----------   80 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-----~~i~~~~~d~-----------   80 (187)
                      .+|-+||-||+|. |..++..+..+  +++|+.+|.++..++..++...++-.-     ...+...+.+           
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~  104 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  104 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHH
Confidence            4678999999984 56777788877  589999999999888777644321000     0000000111           


Q ss_pred             hHHHHHHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCcc
Q 029836           81 LPLLDQLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGGS  136 (187)
Q Consensus        81 ~~~l~~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~  136 (187)
                      .+.+.+.      -...|+|+.-..   +....-.-+.+.+.||||.+++=-.+...|.
T Consensus       105 ~~~l~~~------l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn  157 (183)
T d1l7da1         105 AEAVLKE------LVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGN  157 (183)
T ss_dssp             HHHHHHH------HTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred             HHHHHHH------HHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCc
Confidence            1122221      135799986543   2222223467788999999997444444443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.20  E-value=0.014  Score=37.25  Aligned_cols=91  Identities=14%  Similarity=-0.005  Sum_probs=60.8

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCceeE
Q 029836           22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~D~   99 (187)
                      +++-+  |.|..+..+++.+. +..++.+|.+++..+.++.        ..+.++.||+.+  .|....     -+..+.
T Consensus         2 HivI~--G~g~~g~~l~~~L~-~~~i~vi~~d~~~~~~~~~--------~~~~~i~Gd~~~~~~L~~a~-----i~~A~~   65 (129)
T d2fy8a1           2 HVVIC--GWSESTLECLRELR-GSEVFVLAEDENVRKKVLR--------SGANFVHGDPTRVSDLEKAN-----VRGARA   65 (129)
T ss_dssp             CEEEE--SCCHHHHHHHHTSC-GGGEEEEESCTTHHHHHHH--------TTCEEEESCTTSHHHHHHTT-----CTTCSE
T ss_pred             EEEEE--CCCHHHHHHHHHHc-CCCCEEEEcchHHHHHHHh--------cCccccccccCCHHHHHHhh-----hhcCcE
Confidence            55665  45889999999886 5678899999988765542        357888899854  444432     457788


Q ss_pred             EEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836          100 VFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus       100 v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +++...........-...+.+.|...+++
T Consensus        66 vi~~~~~d~~n~~~~~~~r~~~~~~~iia   94 (129)
T d2fy8a1          66 VIVNLESDSETIHCILGIRKIDESVRIIA   94 (129)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHCSSSCEEE
T ss_pred             EEEeccchhhhHHHHHHHHHHCCCceEEE
Confidence            88765433333344444567777765554

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.18  E-value=0.0078  Score=42.75  Aligned_cols=54  Identities=6%  Similarity=0.143  Sum_probs=43.5

Q ss_pred             HHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH
Q 029836            9 QFFSMLLKLI--NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ   65 (187)
Q Consensus         9 ~~l~~l~~~~--~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~   65 (187)
                      +++..++...  ++..|||--+|+|..+....+ +  +-+.+++|++++-++.|+++++
T Consensus       200 ~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~-~--~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKK-L--GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHH-T--TCEEEEEESCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhCCCCCEEEECCCCchHHHHHHHH-c--CCeEEEEeCCHHHHHHHHHHHc
Confidence            5666666544  467999999999998776554 3  4689999999999999999885

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.079  Score=37.77  Aligned_cols=84  Identities=15%  Similarity=0.088  Sum_probs=60.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH------HHHHHhhc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP------LLDQLIQD   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~   90 (187)
                      .+.+.+|-.|++.|. +..+++.+. .+.+|+.++.+++.++.+.+.++..+...++..+++|..+      .+....+.
T Consensus         8 lk~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            578899999977654 445554442 3689999999999999988888888776788888888753      22222221


Q ss_pred             ccCCCceeEEEEcCC
Q 029836           91 EKYHGTFDFVFVDAD  105 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~  105 (187)
                         .+.+|+++..+.
T Consensus        87 ---~g~iD~lVnnAg   98 (257)
T d1xg5a_          87 ---HSGVDICINNAG   98 (257)
T ss_dssp             ---HCCCSEEEECCC
T ss_pred             ---cCCCCEEEeccc
Confidence               467999987653

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.16  E-value=0.0038  Score=45.10  Aligned_cols=53  Identities=13%  Similarity=0.179  Sum_probs=41.7

Q ss_pred             ceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC----------ccc----HHHHHHHHhcccCCeEEEEe
Q 029836           72 KIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK----------DNY----VNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        72 ~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~----------~~~----~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +-.++.+|..+.++.+.     ++++|+||.|++.          .++    ...++++.++|+++|.+++.
T Consensus         4 ~~~~~~~D~le~l~~l~-----d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_           4 RHVYDVCDCLDTLAKLP-----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             EEEEEECCHHHHHHTSC-----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceEEechHHHHHhhCc-----CCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            45678899999999884     6799999999871          233    44566788999999988864

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=96.09  E-value=0.01  Score=45.47  Aligned_cols=52  Identities=8%  Similarity=0.088  Sum_probs=43.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGV   69 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~   69 (187)
                      .+.+.++|||+..|.++..++...+. ..+|+++|+++...+..+++++.+..
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            35578999999999999888766542 36999999999999999999987654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.09  E-value=0.019  Score=38.46  Aligned_cols=100  Identities=16%  Similarity=0.207  Sum_probs=58.4

Q ss_pred             hcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC-c-hHHHHHHhhcccC
Q 029836           17 LINAKNTMEIGVFTGY-SLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP-A-LPLLDQLIQDEKY   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~-~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d-~-~~~l~~~~~~~~~   93 (187)
                      ..+.++||-+|+|.+. .+..+++... ...|+++|.+++.++.+++    .|...-+.....+ . .+......     
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~----~GAd~~in~~~~~~~~~~~~~~~~-----   95 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV----FGATDFVNPNDHSEPISQVLSKMT-----   95 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCCEEECGGGCSSCHHHHHHHHH-----
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHH----cCCcEEEcCCCcchhHHHHHHhhc-----
Confidence            4456799999998755 4555566544 5799999999998877664    4542211111111 1 11211111     


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEe
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYD  129 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~  129 (187)
                      ...+|+++-...   ....++.+..++++| +++++-
T Consensus        96 ~~G~d~vid~~G---~~~~~~~a~~~~~~g~~~~~~~  129 (175)
T d1cdoa2          96 NGGVDFSLECVG---NVGVMRNALESCLKGWGVSVLV  129 (175)
T ss_dssp             TSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             cCCcceeeeecC---CHHHHHHHHHHhhCCCcceeEE
Confidence            457899986432   345556666666665 566543

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=96.05  E-value=0.0093  Score=40.78  Aligned_cols=106  Identities=8%  Similarity=0.071  Sum_probs=63.7

Q ss_pred             hcCCCEEEEE--cc-cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH---HHHhhc
Q 029836           17 LINAKNTMEI--GV-FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL---DQLIQD   90 (187)
Q Consensus        17 ~~~~~~vLei--G~-g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l---~~~~~~   90 (187)
                      ..+..++|-+  |+ |.|..++.+++.+  +.+++++--+++..+...+.+++.|...-+..-..+..++.   ......
T Consensus        26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~  103 (189)
T d1gu7a2          26 LTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQ  103 (189)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCchHHHHHHHHHhhc--CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhh
Confidence            3445678777  32 3566788888886  57888887666666666677777776332222112222222   222111


Q ss_pred             ccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           91 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .  .+.+|+|| |..   -.+.++...+.|+++|.++.-.
T Consensus       104 ~--g~~vdvv~-D~v---g~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         104 S--GGEAKLAL-NCV---GGKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             H--TCCEEEEE-ESS---CHHHHHHHHHTSCTTCEEEECC
T ss_pred             c--cCCceEEE-ECC---CcchhhhhhhhhcCCcEEEEEC
Confidence            1  35689888 321   1345677889999999998644

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=96.03  E-value=0.0055  Score=44.44  Aligned_cols=110  Identities=12%  Similarity=0.197  Sum_probs=70.4

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836            8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL   87 (187)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~   87 (187)
                      ..++..+-..+. ..-+.+.+|+-.++..++   ++.-+++.+|..|+-.+..++++..   ..++++++.|..+.+..+
T Consensus        72 ~~yl~~v~~~n~-~~~l~~YPGSP~ia~~ll---R~~Drl~l~ELHp~e~~~L~~~~~~---~~~~~v~~~DG~~~l~al  144 (271)
T d2oo3a1          72 LEYISVIKQINL-NSTLSYYPGSPYFAINQL---RSQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNAL  144 (271)
T ss_dssp             HHHHHHHHHHSS-SSSCCEEECHHHHHHHHS---CTTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CCCcCcCCCCHHHHHHhC---CCCCceEEeecCHHHHHHHHHHhcc---CCCceEEcCchHHHHHhh
Confidence            344444433333 333455666655555444   4467999999999998887776543   368999999999887766


Q ss_pred             hhcccCCCceeEEEEcCC---CcccHHHHHHHHhccc--CCeEEE
Q 029836           88 IQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVK--VGGVIG  127 (187)
Q Consensus        88 ~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~--~gG~lv  127 (187)
                      .+.   .+.=-+|+||++   +++|....+.+...++  +.|+++
T Consensus       145 lPP---~~rRgLVLIDPpYE~k~ey~~v~~~l~~a~kr~~~g~~~  186 (271)
T d2oo3a1         145 LPP---PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYC  186 (271)
T ss_dssp             CSC---TTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCC---CCCceEEEecCCcCCHHHHHHHHHHHHHHHHhCCCceEE
Confidence            433   234469999988   4556665555554444  556555

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.95  E-value=0.0043  Score=45.58  Aligned_cols=53  Identities=17%  Similarity=0.278  Sum_probs=41.8

Q ss_pred             ceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC-------------cc----cHHHHHHHHhcccCCeEEEEe
Q 029836           72 KIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK-------------DN----YVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        72 ~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~-------------~~----~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .-++++||..+.+..+.     ++++|+|++|++.             .+    +...+..+.++|+++|.++++
T Consensus        12 ~~~l~~GD~le~l~~l~-----~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~   81 (320)
T d1booa_          12 NGSMYIGDSLELLESFP-----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   81 (320)
T ss_dssp             SEEEEESCHHHHGGGSC-----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEehhHHHHHhhCc-----cCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence            45899999999998874     6799999999871             11    234577888999999998864

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=95.90  E-value=0.14  Score=37.33  Aligned_cols=110  Identities=8%  Similarity=-0.034  Sum_probs=69.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC--CceEEEeCCchH-HHHHHhhcccCCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA--HKIDFREGPALP-LLDQLIQDEKYHG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~-~l~~~~~~~~~~~   95 (187)
                      .++.|+.+|||.-.-...+  ..+++.+++-||. |+.++.-++.+++.+..  .+.+++..|..+ +...+.+.+.+.+
T Consensus        89 g~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~  165 (297)
T d2uyoa1          89 GIRQFVILASGLDSRAYRL--DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  165 (297)
T ss_dssp             TCCEEEEETCTTCCHHHHS--CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCcccCChhhhc--CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCC
Confidence            4678888998665543332  2234577888885 78888888888887654  355667676654 3344443332223


Q ss_pred             ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..=+++.-+.     .+....+++.+..+..+|+.|+++-.
T Consensus       166 ~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~  206 (297)
T d2uyoa1         166 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  206 (297)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            3334444432     44567788888899999999998744

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=95.86  E-value=0.0033  Score=45.23  Aligned_cols=107  Identities=13%  Similarity=0.070  Sum_probs=74.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC---CC------------------------------------CCEEEEEeCCchHHHH
Q 029836           19 NAKNTMEIGVFTGYSLLATALAI---PD------------------------------------DGKILALDITKEHYEK   59 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~---~~------------------------------------~~~v~~vd~~~~~~~~   59 (187)
                      .+..++|--||+|.+.++.+-..   ++                                    ..++.+.|+++++++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            35579999999999998866421   10                                    1245677888888887


Q ss_pred             H---HHHHHHcCCCCceEEEeCCchHHHH--HHhhcccCCCceeEEEEcCCC------------cccHHHHHHHHhcccC
Q 029836           60 G---LPIIQKAGVAHKIDFREGPALPLLD--QLIQDEKYHGTFDFVFVDADK------------DNYVNYHKRLIELVKV  122 (187)
Q Consensus        60 a---~~~~~~~~~~~~i~~~~~d~~~~l~--~~~~~~~~~~~~D~v~~d~~~------------~~~~~~~~~~~~~L~~  122 (187)
                      |   ++|++..|+...+++.+.|..+..+  ....    ...+++|+.+++.            +.+..++..+.+.++.
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~----~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~  205 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLA----GSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA  205 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHT----TCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhccCcchhccC----CCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCC
Confidence            7   5689999999999999998765322  2211    3567999999871            1245566667777877


Q ss_pred             CeEEEEe
Q 029836          123 GGVIGYD  129 (187)
Q Consensus       123 gG~lv~~  129 (187)
                      ..++++.
T Consensus       206 ~s~~~it  212 (249)
T d1o9ga_         206 HAVIAVT  212 (249)
T ss_dssp             TCEEEEE
T ss_pred             CcEEEEe
Confidence            6666664

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.74  E-value=0.018  Score=41.30  Aligned_cols=56  Identities=7%  Similarity=0.008  Sum_probs=45.0

Q ss_pred             HHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc
Q 029836            9 QFFSMLLKLI--NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA   67 (187)
Q Consensus         9 ~~l~~l~~~~--~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~   67 (187)
                      +++..++...  ++..|||--+|+|..+......   +-+.+++|++++..+.|+++++..
T Consensus       195 ~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         195 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            4566665543  5679999999999987766554   468999999999999999999865

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=95.73  E-value=0.01  Score=44.96  Aligned_cols=46  Identities=15%  Similarity=0.140  Sum_probs=36.1

Q ss_pred             CEEEEEcccccHHHHHHHhhCC------CCCEEEEEeCCchHHHHHHHHHHH
Q 029836           21 KNTMEIGVFTGYSLLATALAIP------DDGKILALDITKEHYEKGLPIIQK   66 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~------~~~~v~~vd~~~~~~~~a~~~~~~   66 (187)
                      -+|||+|+|.|..+..++..+.      ...+++.+|.++...+..++.++.
T Consensus        81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~  132 (365)
T d1zkda1          81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  132 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             ceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence            4899999999999988876543      235789999999887776666553

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.72  E-value=0.0078  Score=44.11  Aligned_cols=56  Identities=7%  Similarity=0.040  Sum_probs=44.1

Q ss_pred             HHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc
Q 029836            9 QFFSMLLKLI--NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA   67 (187)
Q Consensus         9 ~~l~~l~~~~--~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~   67 (187)
                      .++..++...  ++..|||.-||+|..+..... +  +-+.+++|++++.++.|++++.+.
T Consensus       238 ~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~-l--gR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         238 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAER-E--SRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHH-T--TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             HHHHHhhhhcccCCCEEEecCCCCcHHHHHHHH-c--CCcEEEEeCCHHHHHHHHHHHHhc
Confidence            5666666543  567999999999998776554 3  468999999999999999887553

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.48  E-value=0.012  Score=39.90  Aligned_cols=97  Identities=9%  Similarity=0.026  Sum_probs=58.8

Q ss_pred             CCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           19 NAKNTMEIGVF--TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        19 ~~~~vLeiG~g--~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      +.++||-.|.+  .|..++.+++.+  +++|+++--+++..+.+++    .|...-+. ...+..+.....     ..+.
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~----lGa~~vi~-~~~~~~~~~~~~-----~~~g   98 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRV----LGAKEVLA-REDVMAERIRPL-----DKQR   98 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHH----TTCSEEEE-CC---------C-----CSCC
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHh----cccceeee-cchhHHHHHHHh-----hccC
Confidence            45789998854  455777788876  5899999999888776654    44422121 121111221211     1568


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|+|+=...    -..++...+.|++||.++.-..
T Consensus        99 vD~vid~vg----g~~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2          99 WAAAVDPVG----GRTLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             EEEEEECST----TTTHHHHHHTEEEEEEEEECSC
T ss_pred             cCEEEEcCC----chhHHHHHHHhCCCceEEEeec
Confidence            997764322    2246778889999999987444

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.36  E-value=0.036  Score=37.05  Aligned_cols=97  Identities=13%  Similarity=0.059  Sum_probs=59.1

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHc--CCCCceE----EEeCCchHHHHHHhhcccC
Q 029836           21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKA--GVAHKID----FREGPALPLLDQLIQDEKY   93 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~--~~~~~i~----~~~~d~~~~l~~~~~~~~~   93 (187)
                      ++|--||+|.-.  ..++..+. .+.+|+.+|.+++.++..++.-...  .......    ....+..+.+         
T Consensus         2 k~iaIiGaG~~G--~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---------   70 (184)
T d1bg6a2           2 KTYAVLGLGNGG--HAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV---------   70 (184)
T ss_dssp             CEEEEECCSHHH--HHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH---------
T ss_pred             CEEEEECccHHH--HHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh---------
Confidence            577888886544  33333222 2579999999998776655432110  0001111    1112222222         


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836           94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD  129 (187)
Q Consensus        94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       ...|+|++--+.......++++.+.|+++.+++..
T Consensus        71 -~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          71 -KDADVILIVVPAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             -TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             -cCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEEe
Confidence             35799999777777888999999999999987753

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.015  Score=42.98  Aligned_cols=76  Identities=11%  Similarity=-0.008  Sum_probs=52.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDG-KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      .|.+|+|+.||.|....-+-.+ +-.. -+.++|+++.+++..+.|+      +...++.+|..++......    ...+
T Consensus         1 ~p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~------~~~~~~~~di~~~~~~~~~----~~~~   69 (343)
T d1g55a_           1 EPLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF------PHTQLLAKTIEGITLEEFD----RLSF   69 (343)
T ss_dssp             CCEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC------TTSCEECSCGGGCCHHHHH----HHCC
T ss_pred             CCCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC------CCCCcccCchhhCCHhHcC----CCCc
Confidence            3678999999999988776544 2122 3679999999888777765      3455667787664333221    2368


Q ss_pred             eEEEEcCC
Q 029836           98 DFVFVDAD  105 (187)
Q Consensus        98 D~v~~d~~  105 (187)
                      |+++...+
T Consensus        70 Dll~ggpP   77 (343)
T d1g55a_          70 DMILMSPP   77 (343)
T ss_dssp             SEEEECCC
T ss_pred             cEEEeecc
Confidence            99988765

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.088  Score=37.76  Aligned_cols=106  Identities=15%  Similarity=0.101  Sum_probs=68.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH------HHHHhhcc
Q 029836           20 AKNTMEIGVFTGYSLLATALAIP--DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL------LDQLIQDE   91 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~--~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~~~~~~   91 (187)
                      +++|.-|-.|++.++..+++.+.  .+.+|+.++.+++..+.+.+.++..+.  ++.++++|..+.      ...+.+. 
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~-   78 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKE-   78 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHh-
Confidence            56774444455556666655442  257999999999999999888887764  678888887432      2223222 


Q ss_pred             cCCCceeEEEEcCC-------CcccH---------------HHHHHHHhcccCCeEEEEeC
Q 029836           92 KYHGTFDFVFVDAD-------KDNYV---------------NYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        92 ~~~~~~D~v~~d~~-------~~~~~---------------~~~~~~~~~L~~gG~lv~~~  130 (187)
                        .+.+|+++..+.       .+...               ...+.+.++|+++|.++.-.
T Consensus        79 --~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          79 --YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             --HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             --cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence              468999998754       11111               23345568889999887543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=94.90  E-value=0.046  Score=39.83  Aligned_cols=70  Identities=13%  Similarity=-0.071  Sum_probs=49.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v  100 (187)
                      .+|||+-||.|....-+-.+ + -..+.++|+++.+.+..+.|+.       -++..+|..++-..-      -...|++
T Consensus         1 mk~~~lF~G~Gg~~~gl~~a-G-~~~~~a~e~d~~a~~~~~~N~~-------~~~~~~Di~~~~~~~------~~~~dll   65 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDE------FPKCDGI   65 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHH-T-CEEEEEEECCHHHHHHHHHHCC-------SEEEESCTTTSCGGG------SCCCSEE
T ss_pred             CeEEEeCcCcCHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHCC-------CCCccCChhhCCHhH------cccccEE
Confidence            37999999999998877665 2 2346799999988877776652       245678876553321      3568999


Q ss_pred             EEcCC
Q 029836          101 FVDAD  105 (187)
Q Consensus       101 ~~d~~  105 (187)
                      +...+
T Consensus        66 ~~g~P   70 (324)
T d1dcta_          66 IGGPP   70 (324)
T ss_dssp             EECCC
T ss_pred             eeccc
Confidence            88755

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=94.82  E-value=0.2  Score=31.03  Aligned_cols=77  Identities=17%  Similarity=0.130  Sum_probs=52.8

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcccC
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKV  122 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~  122 (187)
                      .+|..+|-++...+..+..++..|.  ++.....+..+.+..+.     ...||+|++|....  +=.++++.+.+. .+
T Consensus         2 krILivDD~~~~~~~l~~~L~~~g~--~v~~~a~~~~~al~~~~-----~~~~dliilD~~mp~~~G~e~~~~ir~~-~~   73 (118)
T d1u0sy_           2 KRVLIVDDAAFMRMMLKDIITKAGY--EVAGEATNGREAVEKYK-----ELKPDIVTMDITMPEMNGIDAIKEIMKI-DP   73 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HHCCSEEEEECSCGGGCHHHHHHHHHHH-CT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCC--ceEEEECCHHHHHHHHH-----hccCCEEEEecCCCCCCHHHHHHHHHHh-CC
Confidence            4789999999999999999998765  34334567777776664     35799999998633  334566666543 33


Q ss_pred             Ce-EEEEe
Q 029836          123 GG-VIGYD  129 (187)
Q Consensus       123 gG-~lv~~  129 (187)
                      .- +++++
T Consensus        74 ~~pvi~ls   81 (118)
T d1u0sy_          74 NAKIIVCS   81 (118)
T ss_dssp             TCCEEEEE
T ss_pred             CCcEEEEE
Confidence            33 45543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.81  E-value=0.072  Score=34.65  Aligned_cols=97  Identities=11%  Similarity=0.008  Sum_probs=58.6

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCce
Q 029836           21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGTF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~   97 (187)
                      .+++-+|+  |..+..+++.+. .+..++.+|.+++......+....    ..+.++.||+.+  .+.+..     -+..
T Consensus         4 nHiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a~-----i~~a   72 (153)
T d1id1a_           4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAG-----IDRC   72 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHT-----TTTC
T ss_pred             CEEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHhc-----cccC
Confidence            46777766  666666665542 246899999998765433333332    468889998865  444442     3578


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |.+++-..........-...+.+.|...+++
T Consensus        73 ~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia  103 (153)
T d1id1a_          73 RAILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             SEEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             CEEEEccccHHHHHHHHHHHHHhCCCCceEE
Confidence            8888765433333333334456667765554

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.63  E-value=0.062  Score=34.05  Aligned_cols=92  Identities=18%  Similarity=0.064  Sum_probs=52.6

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCce
Q 029836           21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGTF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~   97 (187)
                      ++++-+|+  |..+..+++.+. .+..|+.+|.+++.++.++.        .....+.+|+.+  .+....     -...
T Consensus         1 k~~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~--------~~~~~~~gd~~~~~~l~~a~-----i~~a   65 (134)
T d2hmva1           1 KQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS--------YATHAVIANATEENELLSLG-----IRNF   65 (134)
T ss_dssp             CCEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT--------TCSEEEECCTTCTTHHHHHT-----GGGC
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH--------hCCcceeeecccchhhhccC-----Cccc
Confidence            35666665  676777666553 25789999999988776532        223456677654  444431     2467


Q ss_pred             eEEEEcCCCcc-cHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDADKDN-YVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~~~~-~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |.+++...... .........+.+ +...++.
T Consensus        66 ~~vi~~~~~~~~~~~~~~~~~~~~-~~~~iia   96 (134)
T d2hmva1          66 EYVIVAIGANIQASTLTTLLLKEL-DIPNIWV   96 (134)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHT-TCSEEEE
T ss_pred             cEEEEEcCchHHhHHHHHHHHHHc-CCCcEEe
Confidence            88877654332 223333334444 4445543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=93.85  E-value=0.044  Score=36.62  Aligned_cols=98  Identities=9%  Similarity=0.022  Sum_probs=60.9

Q ss_pred             CCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           20 AKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        20 ~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ..+||--|.  |.|..+.++++.+  +++|+++.-+++..+.+++    .|.. .+  +.  ..+......... ..+.+
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~--Ga~Viat~~s~~k~~~~~~----lGad-~v--i~--~~~~~~~~~~~~-~~~gv   91 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQ----LGAS-EV--IS--REDVYDGTLKAL-SKQQW   91 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHH----HTCS-EE--EE--HHHHCSSCCCSS-CCCCE
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHc--CCceEEEecCHHHHHHHHh----hccc-ce--Ee--ccchhchhhhcc-cCCCc
Confidence            457888774  4566788889886  5899999999887766544    4442 21  11  112211111000 14579


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      |+|+-...    -..+....+.|+++|.+++-....
T Consensus        92 d~vid~vg----g~~~~~~~~~l~~~G~iv~~G~~~  123 (167)
T d1tt7a2          92 QGAVDPVG----GKQLASLLSKIQYGGSVAVSGLTG  123 (167)
T ss_dssp             EEEEESCC----THHHHHHHTTEEEEEEEEECCCSS
T ss_pred             eEEEecCc----HHHHHHHHHHhccCceEEEeeccC
Confidence            98874322    346778899999999998755443

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=93.83  E-value=0.11  Score=38.02  Aligned_cols=71  Identities=11%  Similarity=-0.055  Sum_probs=51.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D   98 (187)
                      .+.++||+-||.|..+.-+-.+ + -.-+.++|+++.+++..+.|+...        .++|..++-...      ...+|
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a-G-~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~~~~~------~~~~D   73 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEKT------IPDHD   73 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGGG------SCCCS
T ss_pred             CCCeEEEECccccHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcCchhh------cceee
Confidence            4679999999999998887654 2 235678999999999988887421        246765543322      35689


Q ss_pred             EEEEcCC
Q 029836           99 FVFVDAD  105 (187)
Q Consensus        99 ~v~~d~~  105 (187)
                      +++...+
T Consensus        74 ll~ggpP   80 (327)
T d2c7pa1          74 ILCAGFP   80 (327)
T ss_dssp             EEEEECC
T ss_pred             eeecccc
Confidence            9988754

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.80  E-value=0.32  Score=34.43  Aligned_cols=81  Identities=28%  Similarity=0.393  Sum_probs=55.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH------HHHHHhhc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP------LLDQLIQD   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~   90 (187)
                      .+.+.+|-.|.+.|. +..+++.+. .+.+|+.+|.+++.++.+.+.++..+.  ++..+.+|..+      .+....+.
T Consensus         3 L~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           3 FNGKVCLVTGAGGNI-GLATALRLAEEGTAIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            467899999866554 444444332 268999999999999998888887653  68888887643      22222221


Q ss_pred             ccCCCceeEEEEcC
Q 029836           91 EKYHGTFDFVFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~v~~d~  104 (187)
                         .+..|+++...
T Consensus        80 ---~g~iDilVnna   90 (260)
T d1zema1          80 ---FGKIDFLFNNA   90 (260)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---hCCCCeehhhh
Confidence               36899998763

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.69  Score=32.37  Aligned_cols=84  Identities=15%  Similarity=0.076  Sum_probs=55.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KYH   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~~   94 (187)
                      .++.+|-.|++.|. +..++..+. .+.+|+.++.+++.++...+.++..+  .++..+.+|..+.  ...+.+.. ...
T Consensus         6 ~Gkv~lITGas~GI-G~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHGI-GRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            56788888876664 344444332 26899999999999998888888765  4788888887542  22211111 015


Q ss_pred             CceeEEEEcCC
Q 029836           95 GTFDFVFVDAD  105 (187)
Q Consensus        95 ~~~D~v~~d~~  105 (187)
                      +..|+++..+.
T Consensus        83 g~idilinnag   93 (244)
T d1yb1a_          83 GDVSILVNNAG   93 (244)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCceeEeecc
Confidence            67999987654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.42  E-value=0.85  Score=32.31  Aligned_cols=83  Identities=18%  Similarity=0.294  Sum_probs=56.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEEEeCCchH------HHHHHhh
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALP------LLDQLIQ   89 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~------~l~~~~~   89 (187)
                      .+.+++|-.|++.| ++..+++.+. .+.+|+.++.+++.++.+.+.+.+.+.. .++..+++|..+      .+....+
T Consensus         3 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            46788888886554 4555554442 2589999999999999999888877653 468888888643      2222222


Q ss_pred             cccCCCceeEEEEcC
Q 029836           90 DEKYHGTFDFVFVDA  104 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~  104 (187)
                      .   .+..|+++...
T Consensus        82 ~---~g~iDilvnnA   93 (272)
T d1xkqa_          82 Q---FGKIDVLVNNA   93 (272)
T ss_dssp             H---HSCCCEEEECC
T ss_pred             H---hCCceEEEeCC
Confidence            1   36799998763

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.40  E-value=0.81  Score=32.04  Aligned_cols=85  Identities=13%  Similarity=0.086  Sum_probs=57.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~   93 (187)
                      .+.+.+|-.|++. .++..+++.+. .+.+|+.++.+++.++.+.+.++..+  .++..++.|..+.  +..+.+.. ..
T Consensus         8 lenKvalITGas~-GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~   84 (251)
T d2c07a1           8 GENKVALVTGAGR-GIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTE   84 (251)
T ss_dssp             CSSCEEEEESTTS-HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHh
Confidence            3567888888654 46666666654 35799999999999998888888765  3688888887532  22221111 11


Q ss_pred             CCceeEEEEcCC
Q 029836           94 HGTFDFVFVDAD  105 (187)
Q Consensus        94 ~~~~D~v~~d~~  105 (187)
                      .+..|+++..+.
T Consensus        85 ~g~iDilvnnag   96 (251)
T d2c07a1          85 HKNVDILVNNAG   96 (251)
T ss_dssp             CSCCCEEEECCC
T ss_pred             cCCceeeeeccc
Confidence            578999987643

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.029  Score=36.91  Aligned_cols=92  Identities=11%  Similarity=-0.061  Sum_probs=53.8

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCc--eEEEeCCchHHHHHHhhcccCCCce
Q 029836           21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHK--IDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~--i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ++|+-||+|.  ++..++..+. .+..|+.++.+++.....    ...+....  ......+..+.          .+.+
T Consensus         1 MkI~IiGaG~--iG~~~a~~L~~~G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----------~~~~   64 (167)
T d1ks9a2           1 MKITVLGCGA--LGQLWLTALCKQGHEVQGWLRVPQPYCSV----NLVETDGSIFNESLTANDPDF----------LATS   64 (167)
T ss_dssp             CEEEEECCSH--HHHHHHHHHHHTTCEEEEECSSCCSEEEE----EEECTTSCEEEEEEEESCHHH----------HHTC
T ss_pred             CEEEEECcCH--HHHHHHHHHHHCCCceEEEEcCHHHhhhh----ccccCCccccccccccchhhh----------hccc
Confidence            4788898864  3333333221 147899999887543211    11111111  11111222111          2468


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+||+-....+....++.+.++++++..++.
T Consensus        65 D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~   95 (167)
T d1ks9a2          65 DLLLVTLKAWQVSDAVKSLASTLPVTTPILL   95 (167)
T ss_dssp             SEEEECSCGGGHHHHHHHHHTTSCTTSCEEE
T ss_pred             ceEEEeecccchHHHHHhhccccCcccEEee
Confidence            9999987777788899999999999987764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.26  E-value=0.35  Score=34.22  Aligned_cols=86  Identities=15%  Similarity=0.188  Sum_probs=55.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~-~~   93 (187)
                      .+.+.+|-.|++.|. +..+++.+. .+.+|+.+|.+++.++.+.+.+...+...++..+++|..+  ....+.+.. ..
T Consensus         2 l~gK~alITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           2 FTDRVVLITGGGSGL-GRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   80 (258)
T ss_dssp             CTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence            357888999976554 344443332 2689999999999998888877766655678888887643  122221111 01


Q ss_pred             CCceeEEEEcC
Q 029836           94 HGTFDFVFVDA  104 (187)
Q Consensus        94 ~~~~D~v~~d~  104 (187)
                      .+..|+++..+
T Consensus        81 ~G~iDiLVnnA   91 (258)
T d1iy8a_          81 FGRIDGFFNNA   91 (258)
T ss_dssp             HSCCSEEEECC
T ss_pred             hCCCCEEEECC
Confidence            36899998764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.22  E-value=0.38  Score=33.85  Aligned_cols=83  Identities=18%  Similarity=0.161  Sum_probs=55.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH------HHHHHhhcc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP------LLDQLIQDE   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~~   91 (187)
                      ++|.+|-.|++.| ++..+++.+. .+++|+.++.+++.++.+.+.+.+.....++.++.+|..+      .+....+. 
T Consensus         2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-   79 (254)
T d2gdza1           2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH-   79 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH-
Confidence            4678888886654 4555555442 3689999999999888887777654334578888888643      22222221 


Q ss_pred             cCCCceeEEEEcCC
Q 029836           92 KYHGTFDFVFVDAD  105 (187)
Q Consensus        92 ~~~~~~D~v~~d~~  105 (187)
                        .++.|+++..+.
T Consensus        80 --~G~iDilVnnAg   91 (254)
T d2gdza1          80 --FGRLDILVNNAG   91 (254)
T ss_dssp             --HSCCCEEEECCC
T ss_pred             --cCCcCeeccccc
Confidence              368999987754

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.21  E-value=0.51  Score=29.14  Aligned_cols=78  Identities=13%  Similarity=0.031  Sum_probs=53.3

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHhcccC
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIELVKV  122 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~~L~~  122 (187)
                      -+|..||-++...+..++.++..|.  .+. ...++.+.+..+.     ...||+|++|...  .+-..++..+...-..
T Consensus         2 irILiVdDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~-----~~~~dlillD~~mp~~~g~~~~~~lr~~~~~   73 (122)
T d1kgsa2           2 VRVLVVEDERDLADLITEALKKEMF--TVD-VCYDGEEGMYMAL-----NEPFDVVILDIMLPVHDGWEILKSMRESGVN   73 (122)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHHTTCC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCC--EEE-EEcchHHHHHHHH-----hhCccccccccccccchhHHHHHHHHhcCCC
Confidence            4789999999999999999998776  344 4567766666654     4689999999763  2335566666543322


Q ss_pred             CeEEEEeC
Q 029836          123 GGVIGYDN  130 (187)
Q Consensus       123 gG~lv~~~  130 (187)
                      --+++++.
T Consensus        74 ~piI~lt~   81 (122)
T d1kgsa2          74 TPVLMLTA   81 (122)
T ss_dssp             CCEEEEES
T ss_pred             CcEEEEcC
Confidence            23555543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.02  E-value=0.95  Score=31.73  Aligned_cols=82  Identities=15%  Similarity=0.198  Sum_probs=53.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEE-eCCchHHHHHHHHHHHcCCCCceEEEeCCchH------HHHHHhh
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILAL-DITKEHYEKGLPIIQKAGVAHKIDFREGPALP------LLDQLIQ   89 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~v-d~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~   89 (187)
                      ..++.+|-.|. ++.++..+++.+. .+.+|+.. ..+++..+.+.+.++..|.  ++.++++|..+      .+.....
T Consensus         4 L~GK~alITGa-s~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           4 LAGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             TTTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHH
Confidence            35688888775 5555566555442 25777764 5677778888888888774  78888888753      2232222


Q ss_pred             cccCCCceeEEEEcCC
Q 029836           90 DEKYHGTFDFVFVDAD  105 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~  105 (187)
                      .   .+..|+++....
T Consensus        81 ~---~g~idilinnag   93 (259)
T d1ja9a_          81 H---FGGLDFVMSNSG   93 (259)
T ss_dssp             H---HSCEEEEECCCC
T ss_pred             H---cCCCcEEEeccc
Confidence            2   467999987643

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.88  E-value=1  Score=31.70  Aligned_cols=83  Identities=20%  Similarity=0.245  Sum_probs=56.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEEEeCCchH------HHHHHhh
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALP------LLDQLIQ   89 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~------~l~~~~~   89 (187)
                      .+.|.+|-.|++.| ++..+++.+. .+.+|+.++.+++.++.+.+.+...+.. .++.++++|..+      .+....+
T Consensus         3 l~gKvalVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           3 FAEKVAIITGSSNG-IGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            36778888886544 4555554442 3689999999999999888888877653 468889888743      2222221


Q ss_pred             cccCCCceeEEEEcC
Q 029836           90 DEKYHGTFDFVFVDA  104 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~  104 (187)
                      .   .++.|+++...
T Consensus        82 ~---~g~iDilvnnA   93 (264)
T d1spxa_          82 K---FGKLDILVNNA   93 (264)
T ss_dssp             H---HSCCCEEEECC
T ss_pred             H---hCCCCEeeccc
Confidence            1   36889988653

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.83  E-value=0.4  Score=31.87  Aligned_cols=75  Identities=12%  Similarity=0.120  Sum_probs=43.8

Q ss_pred             EEEEEcccc-cHHHHHHHhhCCCCCEEEEE-eCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           22 NTMEIGVFT-GYSLLATALAIPDDGKILAL-DITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        22 ~vLeiG~g~-G~~~~~l~~~~~~~~~v~~v-d~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      ++.-||||. |..-...+...+ +.+++++ |.+++..   ++..++.+..+..+++ .|..+.+.        +...|+
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~-~~~i~ai~d~~~~~~---~~~~~~~~~~~~~~~~-~~~~~ll~--------~~~iD~   69 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKA---KAFATANNYPESTKIH-GSYESLLE--------DPEIDA   69 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHH---HHHHHHTTCCTTCEEE-SSHHHHHH--------CTTCCE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCC-CCEEEEEEeCCcccc---ccchhccccccceeec-CcHHHhhh--------ccccce
Confidence            577899974 332223344444 5778765 7776544   3334555665555543 45655554        457899


Q ss_pred             EEEcCCCccc
Q 029836          100 VFVDADKDNY  109 (187)
Q Consensus       100 v~~d~~~~~~  109 (187)
                      |++..+...+
T Consensus        70 v~I~tp~~~h   79 (184)
T d1ydwa1          70 LYVPLPTSLH   79 (184)
T ss_dssp             EEECCCGGGH
T ss_pred             eeecccchhh
Confidence            9987654333

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.34  E-value=0.52  Score=29.48  Aligned_cols=83  Identities=12%  Similarity=0.181  Sum_probs=52.2

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcccC
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKV  122 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~  122 (187)
                      -+|..||-++...+..++.++..|. ..++. ..|..+.+..+.........||+|++|....  +=.+..+.+++...+
T Consensus         2 irVLvVDD~~~~~~~l~~~L~~~g~-~~v~~-a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~~~~   79 (128)
T d2r25b1           2 VKILVVEDNHVNQEVIKRMLNLEGI-ENIEL-ACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGY   79 (128)
T ss_dssp             SCEEEECSCHHHHHHHHHHHHHTTC-CCEEE-ESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHcCC-eEEEE-EcChHHHHHHHHhhhhccCCCCEEEEEeCCCCCCHHHHHHHHHHccCC
Confidence            3688999999999999999999886 24453 4566555443321100146899999997633  334566666544444


Q ss_pred             Ce-EEEEe
Q 029836          123 GG-VIGYD  129 (187)
Q Consensus       123 gG-~lv~~  129 (187)
                      .- +++++
T Consensus        80 ~~piI~lT   87 (128)
T d2r25b1          80 TSPIVALT   87 (128)
T ss_dssp             CSCEEEEE
T ss_pred             CCeEEEEE
Confidence            43 44443

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.30  E-value=0.74  Score=29.01  Aligned_cols=75  Identities=17%  Similarity=0.135  Sum_probs=51.8

Q ss_pred             EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCC
Q 029836           46 KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVG  123 (187)
Q Consensus        46 ~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~g  123 (187)
                      +|..||-++......+..++..|.  ++. ...+..+.+..+.     ...||+|++|..  ..+-.++++.+... .+.
T Consensus         2 kILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~eAl~~l~-----~~~~dlvilD~~mp~~~G~e~~~~lr~~-~~~   72 (137)
T d1ny5a1           2 NVLVIEDDKVFRGLLEEYLSMKGI--KVE-SAERGKEAYKLLS-----EKHFNVVLLDLLLPDVNGLEILKWIKER-SPE   72 (137)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHHTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESBCSSSBHHHHHHHHHHH-CTT
T ss_pred             EEEEEecCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHhh-----ccccccchHHHhhhhhhHHHHHHHHHHh-CCC
Confidence            578899999999999999998876  444 3556666666554     458999999975  23345666666543 344


Q ss_pred             -eEEEEe
Q 029836          124 -GVIGYD  129 (187)
Q Consensus       124 -G~lv~~  129 (187)
                       -+++++
T Consensus        73 ~piI~lT   79 (137)
T d1ny5a1          73 TEVIVIT   79 (137)
T ss_dssp             SEEEEEE
T ss_pred             CCEEEEE
Confidence             355544

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=92.12  E-value=1.7  Score=32.59  Aligned_cols=123  Identities=11%  Similarity=0.051  Sum_probs=77.3

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-chHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDIT-KEHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      .+|....+=+.++.+-.....+-..+|...++..+...++++.+|++.+.- -.-....++.++..|.  .++++..+-.
T Consensus        56 ~nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi--~~~~~d~~d~  133 (391)
T d1cl1a_          56 GTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV--TTSWFDPLIG  133 (391)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTC--EEEEECTTCG
T ss_pred             CChhHHHHHHHHHHHhCCccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhccccccc--ccccccCccc
Confidence            357777777888888888899999998888776666666667777776643 3344555566666665  4566553322


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC------CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +.+....     .+.-.+|++-.+      ..+... +..+.+.-++|..+++||+.-
T Consensus       134 ~~~~~~i-----~~~t~~i~~EtpsNP~l~v~Di~~-i~~~a~~~~~g~~~vVDnT~a  185 (391)
T d1cl1a_         134 ADIVKHL-----QPNTKIVFLESPGSITMEVHDVPA-IVAAVRSVVPDAIIMIDNTWA  185 (391)
T ss_dssp             GGGGGTC-----CTTEEEEEEESSCTTTCCCCCHHH-HHHHHHHHCTTCEEEEECTTT
T ss_pred             ccccccc-----ccccceeeecccCcccccccccHH-HHHHHHhccCCcEEEEecccc
Confidence            3223221     456789988654      123333 333333345688999999854

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=92.04  E-value=1  Score=33.88  Aligned_cols=120  Identities=13%  Similarity=0.091  Sum_probs=77.6

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-hHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~-~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|.+..+=+.++.+-.....+-..+|.+.++..+...++++.+|++.+.-- ......+..+++.|.  .++++...-.+
T Consensus        58 nPT~~~LE~~la~LEg~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi--~~~~~d~~d~~  135 (392)
T d1gc0a_          58 NPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV--KLRHVDMADLQ  135 (392)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTC--EEEEECTTCHH
T ss_pred             ChHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCc--ccccCCccCHH
Confidence            566777777788888888999999999988887777666667777776543 444566667777776  56666543333


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC--C----cccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD--K----DNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~--~----~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .+....     .+.-++|++-.+  +    .+....-+.++   +.|-.+++||+.-
T Consensus       136 ~~~~ai-----~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~---~~g~~~vvDnT~a  184 (392)
T d1gc0a_         136 ALEAAM-----TPATRVIYFESPANPNMHMADIAGVAKIAR---KHGATVVVDNTYC  184 (392)
T ss_dssp             HHHHHC-----CTTEEEEEEESSCTTTCCCCCHHHHHHHHG---GGTCEEEEECTTT
T ss_pred             HHHHhC-----CCCCeEEEecccccceeeecchHHHHHHHH---hcCCEEEEecCcc
Confidence            344332     445689998754  2    23333333332   3566777788743

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=91.89  E-value=0.22  Score=36.48  Aligned_cols=78  Identities=21%  Similarity=0.270  Sum_probs=47.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCCce
Q 029836           21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHGTF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~~   97 (187)
                      ++||-+| |+|+++.++++.+- .+..|+++|......+......+.... .+++++++|..+.  +.....    ..++
T Consensus         1 MKiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~l~~~~~----~~~~   74 (338)
T d1udca_           1 MRVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG-KHPTFVEGDIRNEALMTEILH----DHAI   74 (338)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHT-SCCEEEECCTTCHHHHHHHHH----HTTC
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcC-CCCEEEEeecCCHHHHHHHHh----ccCC
Confidence            3688888 89999999887662 357899998532222212222222211 5799999997653  333321    2368


Q ss_pred             eEEEEcC
Q 029836           98 DFVFVDA  104 (187)
Q Consensus        98 D~v~~d~  104 (187)
                      |.||.-+
T Consensus        75 d~ViHlA   81 (338)
T d1udca_          75 DTVIHFA   81 (338)
T ss_dssp             SEEEECC
T ss_pred             CEEEECC
Confidence            9998654

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.87  E-value=0.79  Score=28.12  Aligned_cols=78  Identities=13%  Similarity=0.053  Sum_probs=52.8

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCcc--cHHHHHHHHhcccC
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDN--YVNYHKRLIELVKV  122 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~--~~~~~~~~~~~L~~  122 (187)
                      .+|..||-++...+..+..++..|.  ++. ...++.+.+..+.     ..+||+|++|.....  -.+++..+...-..
T Consensus         3 krILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~-----~~~~dlillD~~mp~~~G~~~~~~~r~~~~~   74 (121)
T d1mvoa_           3 KKILVVDDEESIVTLLQYNLERSGY--DVI-TASDGEEALKKAE-----TEKPDLIVLDVMLPKLDGIEVCKQLRQQKLM   74 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEEESSCSSSCHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----cccccEEEecccccCCCCchhhhhhhccCCC
Confidence            4799999999999999999999875  343 3556666666554     357999999986322  34555555544333


Q ss_pred             CeEEEEeC
Q 029836          123 GGVIGYDN  130 (187)
Q Consensus       123 gG~lv~~~  130 (187)
                      --++++..
T Consensus        75 ~~ii~lt~   82 (121)
T d1mvoa_          75 FPILMLTA   82 (121)
T ss_dssp             CCEEEEEC
T ss_pred             CEEEEEEe
Confidence            34555543

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=91.55  E-value=0.86  Score=27.92  Aligned_cols=77  Identities=21%  Similarity=0.135  Sum_probs=52.3

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcccC
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKV  122 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~  122 (187)
                      .+|..||-++......++.+...|.  ++. ...+..+.+..+.     ...||+|++|....  +=.++++.++..-+.
T Consensus         2 krILvVDD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~~~-----~~~~dlillD~~mP~~~G~el~~~lr~~~~~   73 (119)
T d1peya_           2 EKILIVDDQSGIRILLNEVFNKEGY--QTF-QAANGLQALDIVT-----KERPDLVLLDMKIPGMDGIEILKRMKVIDEN   73 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEEESCCTTCCHHHHHHHHHHHCTT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCC--EEE-EeCCHHHHHHHHH-----hCCCCEEEEeccCCCCCHHHHHHHHHHhCCC
Confidence            4789999999999999999998775  333 3456666666553     35799999997632  335666666544333


Q ss_pred             CeEEEEe
Q 029836          123 GGVIGYD  129 (187)
Q Consensus       123 gG~lv~~  129 (187)
                      =-+++++
T Consensus        74 ~pvi~lt   80 (119)
T d1peya_          74 IRVIIMT   80 (119)
T ss_dssp             CEEEEEE
T ss_pred             CcEEEEe
Confidence            2455543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.50  E-value=0.82  Score=32.05  Aligned_cols=76  Identities=18%  Similarity=0.078  Sum_probs=51.6

Q ss_pred             EEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH------HHHHHhhcccCCC
Q 029836           23 TMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP------LLDQLIQDEKYHG   95 (187)
Q Consensus        23 vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~~~~~~   95 (187)
                      +|-.|++ +.++..+++.+. .+.+|+.++.+++.++.+.+.+++.+.  ++..+++|..+      .+....+.   .+
T Consensus         4 alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~---~g   77 (255)
T d1gega_           4 ALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKT---LG   77 (255)
T ss_dssp             EEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH---TT
T ss_pred             EEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHH---hC
Confidence            4666755 445555555442 358999999999999988888887763  78888888753      22222222   47


Q ss_pred             ceeEEEEcC
Q 029836           96 TFDFVFVDA  104 (187)
Q Consensus        96 ~~D~v~~d~  104 (187)
                      +.|+++..+
T Consensus        78 ~iDilVnnA   86 (255)
T d1gega_          78 GFDVIVNNA   86 (255)
T ss_dssp             CCCEEEECC
T ss_pred             CccEEEecc
Confidence            899998764

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=91.49  E-value=1.7  Score=32.68  Aligned_cols=120  Identities=10%  Similarity=0.046  Sum_probs=79.4

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-hHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~-~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|.+..+=+.++.+......+-..+|.+.++..+...++++.+|++.+.-- .........+++.|+  .++++..+-.+
T Consensus        62 nPT~~~LE~~la~LEgg~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi--~~~~vd~~d~~  139 (397)
T d1y4ia1          62 NPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI--NVRFVDAGKPE  139 (397)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTC--EEEEECTTSHH
T ss_pred             CHHHHHHHHHHHHHhCCccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCce--EeeccCCCCHH
Confidence            577777777888888888888899998888777777777677887777544 344566677778776  56776654444


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC------CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .+....     .+.-.+|++-.+      ..+.....+.+.   +.|-.+++||+.-
T Consensus       140 ~~~~~i-----~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~---~~gi~~vvDnT~a  188 (397)
T d1y4ia1         140 EIRAAM-----RPETKVVYIETPANPTLSLVDIETVAGIAH---QQGALLVVDNTFM  188 (397)
T ss_dssp             HHHHHC-----CTTEEEEEEESSCTTTCCCCCHHHHHHHHH---HTTCEEEEECTTT
T ss_pred             HHHHhc-----CCCCcEEEecCCcccceeecccHHHHHHhh---cCCceEEecCccc
Confidence            444332     456789998754      223333333332   3566777788743

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=91.47  E-value=0.26  Score=35.60  Aligned_cols=76  Identities=16%  Similarity=0.143  Sum_probs=47.4

Q ss_pred             EEEEEcccccHHHHHHHhhC-CCCCEEEEEe-CCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCce
Q 029836           22 NTMEIGVFTGYSLLATALAI-PDDGKILALD-ITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGTF   97 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd-~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~   97 (187)
                      +||-.| |+|.++..+.+.+ ..+.+|+++| .+..........+..   ..+++++.+|..+  .+....+    ..++
T Consensus         2 KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~---~~~~~~i~~Di~~~~~l~~~~~----~~~~   73 (338)
T d1orra_           2 KLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLIT----KYMP   73 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHH----HHCC
T ss_pred             EEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc---cCCcEEEEcccCCHHHHHHHHH----hcCC
Confidence            578776 7899998887766 2368999998 333322222222222   2689999999864  3343321    2357


Q ss_pred             eEEEEcCC
Q 029836           98 DFVFVDAD  105 (187)
Q Consensus        98 D~v~~d~~  105 (187)
                      |.||.-+.
T Consensus        74 d~Vih~aa   81 (338)
T d1orra_          74 DSCFHLAG   81 (338)
T ss_dssp             SEEEECCC
T ss_pred             ceEEeecc
Confidence            99986554

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.32  E-value=0.39  Score=29.60  Aligned_cols=53  Identities=11%  Similarity=0.054  Sum_probs=37.0

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeC--------CchHHHHHHHHHHHcCC
Q 029836           15 LKLINAKNTMEIGVFTGYSLLATALAIP-DDGKILALDI--------TKEHYEKGLPIIQKAGV   69 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~--------~~~~~~~a~~~~~~~~~   69 (187)
                      .....|++|+-||+  |..++++|..+. .+.+|+.++.        +++..+.+++.+++.|.
T Consensus        17 ~~l~~p~~v~IiGg--G~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV   78 (117)
T d1onfa2          17 FNIKESKKIGIVGS--GYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNI   78 (117)
T ss_dssp             TTCCCCSEEEEECC--SHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTC
T ss_pred             hccCCCCEEEEECC--chHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCC
Confidence            34567899999988  556666655442 2579999996        44556777788887654

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.30  E-value=1.9  Score=31.48  Aligned_cols=121  Identities=12%  Similarity=0.078  Sum_probs=66.9

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC--------------------
Q 029836            9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG--------------------   68 (187)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~--------------------   68 (187)
                      .++..++...+...|+-+|||.-.....+....+ +.+++=||. |+.++.-++.+++..                    
T Consensus        86 ~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~  163 (328)
T d1rjda_          86 AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLI  163 (328)
T ss_dssp             HHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEE
T ss_pred             HHHHHHHHHCCCcEEEEeCCccchHHHHhhccCC-CcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccC
Confidence            3444455555667899999988876666665544 445555554 444443334443311                    


Q ss_pred             CCCceEEEeCCchH--HHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836           69 VAHKIDFREGPALP--LLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNT  131 (187)
Q Consensus        69 ~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..++.+++..|..+  .+..+.+.+.+.+..=+++.-+.     .+.....++.+....+.+..++.+-+
T Consensus       164 ~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~~~~i~YE~i  233 (328)
T d1rjda_         164 DQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWISYDPI  233 (328)
T ss_dssp             ECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEEEC
T ss_pred             CCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCCceEEEeccC
Confidence            12467778888765  33444333211222334444443     34456677777777776666665533

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.09  E-value=0.99  Score=27.74  Aligned_cols=77  Identities=12%  Similarity=0.037  Sum_probs=53.6

Q ss_pred             EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHhcccCC
Q 029836           46 KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIELVKVG  123 (187)
Q Consensus        46 ~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~~L~~g  123 (187)
                      +|..||-++...+..++.++..|.  ++. ...+..+.+..+.     ...||+|++|...  .+-.++++.+.+.-+.=
T Consensus         3 kILiVDD~~~~~~~l~~~L~~~g~--~v~-~a~~~~eal~~~~-----~~~~dlvl~D~~mP~~~G~el~~~ir~~~~~~   74 (121)
T d1ys7a2           3 RVLVVDDDSDVLASLERGLRLSGF--EVA-TAVDGAEALRSAT-----ENRPDAIVLDINMPVLDGVSVVTALRAMDNDV   74 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESSCSSSCHHHHHHHHHHTTCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEEeeccCcccHHHHHHHHhcCCCC
Confidence            789999999999999999998775  343 4456767666664     4579999999762  33456667766543333


Q ss_pred             eEEEEeC
Q 029836          124 GVIGYDN  130 (187)
Q Consensus       124 G~lv~~~  130 (187)
                      -++++..
T Consensus        75 piI~lt~   81 (121)
T d1ys7a2          75 PVCVLSA   81 (121)
T ss_dssp             CEEEEEC
T ss_pred             EEEEEEe
Confidence            4555543

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.92  E-value=1  Score=27.68  Aligned_cols=76  Identities=14%  Similarity=0.004  Sum_probs=50.9

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEE--EeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcc
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDF--REGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELV  120 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L  120 (187)
                      -+|..+|-++...+..++.+...+   .++.  ...+..+.+..+.     ...||+|++|....  +=.++++.++...
T Consensus         2 irILivDD~~~~~~~l~~~L~~~~---~~~~v~~a~~g~~al~~~~-----~~~~dlillD~~mP~~dG~e~~~~ir~~~   73 (123)
T d1dz3a_           2 IKVCIADDNRELVSLLDEYISSQP---DMEVIGTAYNGQDCLQMLE-----EKRPDILLLDIIMPHLDGLAVLERIRAGF   73 (123)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTST---TEEEEEEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred             cEEEEEeCCHHHHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHH-----hcCCCEEEEcCCCCCCCHHHHHHHHHhcC
Confidence            368889999999999999998654   2332  3467777666554     35799999998633  3356777776544


Q ss_pred             cCCe-EEEE
Q 029836          121 KVGG-VIGY  128 (187)
Q Consensus       121 ~~gG-~lv~  128 (187)
                      ...- ++++
T Consensus        74 ~~~~~ii~~   82 (123)
T d1dz3a_          74 EHQPNVIML   82 (123)
T ss_dssp             SSCCEEEEE
T ss_pred             CCCCeEEEE
Confidence            4333 4444

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=90.88  E-value=1.8  Score=30.32  Aligned_cols=82  Identities=11%  Similarity=0.202  Sum_probs=55.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH------HHHHHhhc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP------LLDQLIQD   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~   90 (187)
                      .+.+.+|-.|++.| ++..+++.+. .+++|+.++.+++.++.+.+.++..+  .++.++++|..+      .+......
T Consensus         6 L~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d2ae2a_           6 LEGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH   82 (259)
T ss_dssp             CTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHH
Confidence            36788998886654 4455554442 25899999999999988888888765  477888887643      22222211


Q ss_pred             ccCCCceeEEEEcC
Q 029836           91 EKYHGTFDFVFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~v~~d~  104 (187)
                        ..++.|+++..+
T Consensus        83 --~~~~idilvnnA   94 (259)
T d2ae2a_          83 --FHGKLNILVNNA   94 (259)
T ss_dssp             --TTTCCCEEEECC
T ss_pred             --hCCCceEEEECC
Confidence              024789998764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=1.7  Score=30.08  Aligned_cols=78  Identities=13%  Similarity=0.112  Sum_probs=50.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYH   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~   94 (187)
                      .+++++|-.|++.| ++..+++.+. .+.+|+.+|.+++.++.+.+.+      .++..++.|..+  ......++   -
T Consensus         5 L~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~---~   74 (244)
T d1pr9a_           5 LAGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGS---V   74 (244)
T ss_dssp             CTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTT---C
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHH---h
Confidence            46789999996655 4555554442 2589999999988776554433      346667777644  23333332   4


Q ss_pred             CceeEEEEcCC
Q 029836           95 GTFDFVFVDAD  105 (187)
Q Consensus        95 ~~~D~v~~d~~  105 (187)
                      ++.|+++..+.
T Consensus        75 g~iDilVnnAg   85 (244)
T d1pr9a_          75 GPVDLLVNNAA   85 (244)
T ss_dssp             CCCCEEEECCC
T ss_pred             CCceEEEeccc
Confidence            68999987643

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=90.55  E-value=1.2  Score=28.00  Aligned_cols=76  Identities=13%  Similarity=0.138  Sum_probs=53.0

Q ss_pred             EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcccCC
Q 029836           46 KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKVG  123 (187)
Q Consensus        46 ~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~g  123 (187)
                      +|..||-++......+..++..|.  ++.. ..++.+.+..+.     ...+|+|++|....  +=.++++.+... .|+
T Consensus         2 ~ILiVDDd~~~~~~l~~~L~~~g~--~v~~-~~~~~~al~~l~-----~~~~dlil~D~~mP~~~G~el~~~lr~~-~~~   72 (140)
T d1qkka_           2 SVFLIDDDRDLRKAMQQTLELAGF--TVSS-FASATEALAGLS-----ADFAGIVISDIRMPGMDGLALFRKILAL-DPD   72 (140)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEEE-ESCHHHHHHTCC-----TTCCSEEEEESCCSSSCHHHHHHHHHHH-CTT
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC--EEEE-eCChHHHHHHHh-----ccCcchHHHhhccCCCCHHHHHHHHHHh-CCC
Confidence            588899999999999999998775  4443 357766666653     56899999997633  335667776654 344


Q ss_pred             -eEEEEeC
Q 029836          124 -GVIGYDN  130 (187)
Q Consensus       124 -G~lv~~~  130 (187)
                       -+++++.
T Consensus        73 ~pvI~lT~   80 (140)
T d1qkka_          73 LPMILVTG   80 (140)
T ss_dssp             SCEEEEEC
T ss_pred             CcEEEEEC
Confidence             3555543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=90.54  E-value=1.9  Score=30.14  Aligned_cols=82  Identities=11%  Similarity=0.186  Sum_probs=54.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--H----HHHhhc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--L----DQLIQD   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l----~~~~~~   90 (187)
                      .+.+++|-.|+..| ++..+++.+ ..+.+|+.++.+++.++.+.+.++..+.  ++.++..|..+.  +    ....+.
T Consensus         4 L~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           4 LKGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             CTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHH
Confidence            36789999997654 444444433 2268999999999999888888887764  677777876432  2    222221


Q ss_pred             ccCCCceeEEEEcC
Q 029836           91 EKYHGTFDFVFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~v~~d~  104 (187)
                        ..+..|+++...
T Consensus        81 --~~g~idilinna   92 (258)
T d1ae1a_          81 --FDGKLNILVNNA   92 (258)
T ss_dssp             --TTSCCCEEEECC
T ss_pred             --hCCCcEEEeccc
Confidence              135688887653

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=90.47  E-value=0.81  Score=28.47  Aligned_cols=68  Identities=13%  Similarity=0.076  Sum_probs=47.9

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIE  118 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~  118 (187)
                      .-+|..||-++......++.+...|.. .+ ....+..+.+..+.     ..+||+|++|....  +-.++++.++.
T Consensus         6 ~~kILiVDD~~~~~~~l~~~L~~~g~~-~v-~~a~~~~~al~~l~-----~~~~dlii~D~~mP~~~G~el~~~lr~   75 (129)
T d1p6qa_           6 KIKVLIVDDQVTSRLLLGDALQQLGFK-QI-TAAGDGEQGMKIMA-----QNPHHLVISDFNMPKMDGLGLLQAVRA   75 (129)
T ss_dssp             CCCEEEECSSHHHHHHHHHHHHTTTCS-CE-ECCSSHHHHHHHHH-----TSCCSEEEECSSSCSSCHHHHHHHHTT
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCe-EE-EEECCHHHHHHHHH-----hCCCCeEEeeeecCCCChHHHHHHHHh
Confidence            357999999999999999999987762 22 23456666666554     56899999998633  33556666654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.47  E-value=1.1  Score=29.83  Aligned_cols=79  Identities=8%  Similarity=0.031  Sum_probs=48.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      +.+++|-.|++.| .+..+++.+. .+.+|+.++.+++..+.+.+.+.......-...-..+. +.+.+.      -+..
T Consensus        22 ~gK~vlItGasgG-IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~------~~~i   93 (191)
T d1luaa1          22 KGKKAVVLAGTGP-VGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADD-ASRAEA------VKGA   93 (191)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSH-HHHHHH------TTTC
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccH-HHHHHH------hcCc
Confidence            6889999995443 4444443332 25899999999999888877776643212222222333 333444      4678


Q ss_pred             eEEEEcCC
Q 029836           98 DFVFVDAD  105 (187)
Q Consensus        98 D~v~~d~~  105 (187)
                      |+++....
T Consensus        94 Dilin~Ag  101 (191)
T d1luaa1          94 HFVFTAGA  101 (191)
T ss_dssp             SEEEECCC
T ss_pred             CeeeecCc
Confidence            99987643

>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Escherichia coli [TaxId: 562]

Probab=90.44  E-value=1.2  Score=27.62  Aligned_cols=68  Identities=16%  Similarity=0.231  Sum_probs=49.0

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHh
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIE  118 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~  118 (187)
                      +.++..||-++...+..++.++..|.. .+. ...++.+.+....     ...||+|++|...  .+-.++++.++.
T Consensus         4 ~lriLvVDD~~~~r~~i~~~L~~~g~~-~v~-~a~~g~~a~~~~~-----~~~~dlii~D~~mP~~dG~el~~~ir~   73 (128)
T d1jbea_           4 ELKFLVVDDFSTMRRIVRNLLKELGFN-NVE-EAEDGVDALNKLQ-----AGGYGFVISDWNMPNMDGLELLKTIRA   73 (128)
T ss_dssp             TCCEEEECSCHHHHHHHHHHHHHTTCC-CEE-EESSHHHHHHHHT-----TCCCCEEEEESCCSSSCHHHHHHHHHC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCc-EEE-EecCchHHHHHHh-----cCCCCEEEEecccccCCHHHHHHHHHh
Confidence            467999999999999999999998762 333 3456666665553     5689999999863  334566666654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.42  E-value=1.9  Score=29.99  Aligned_cols=81  Identities=15%  Similarity=0.135  Sum_probs=52.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHH-HcCCCCceEEEeCCchH------HHHHHhh
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQ-KAGVAHKIDFREGPALP------LLDQLIQ   89 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~-~~~~~~~i~~~~~d~~~------~l~~~~~   89 (187)
                      .+.+.+|-.|++.| ++..+++.+. .+.+|+.++.+++..+.+.+.+. ..+  .++..+++|..+      .+....+
T Consensus         3 l~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           3 LRGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            36788999997655 4444444432 25899999999988876665554 334  467788888643      2222222


Q ss_pred             cccCCCceeEEEEcC
Q 029836           90 DEKYHGTFDFVFVDA  104 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~  104 (187)
                      .   .++.|+++..+
T Consensus        80 ~---~g~iDiLVnnA   91 (251)
T d1vl8a_          80 K---FGKLDTVVNAA   91 (251)
T ss_dssp             H---HSCCCEEEECC
T ss_pred             H---cCCCCEEEECC
Confidence            1   36899998764

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=90.32  E-value=1.6  Score=28.73  Aligned_cols=91  Identities=15%  Similarity=0.015  Sum_probs=48.6

Q ss_pred             CCEEEEEcccccHHH--HHHHhhCCCCCEEEE-EeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           20 AKNTMEIGVFTGYSL--LATALAIPDDGKILA-LDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~--~~l~~~~~~~~~v~~-vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      ..+|.-||||.=...  +.....++...++++ +|.+++..+...+   ..+.   . ....+..+.+.        +..
T Consensus         3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~---~~~~---~-~~~~~~~ell~--------~~~   67 (181)
T d1zh8a1           3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAK---MVGN---P-AVFDSYEELLE--------SGL   67 (181)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHH---HHSS---C-EEESCHHHHHH--------SSC
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhc---cccc---c-ceeeeeecccc--------ccc
Confidence            347888998642221  223444443457775 4777765544333   3332   1 22356665554        567


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|+|++..+...+.+...   ..|+.|--+++
T Consensus        68 id~v~I~tp~~~h~~~~~---~al~~gk~V~~   96 (181)
T d1zh8a1          68 VDAVDLTLPVELNLPFIE---KALRKGVHVIC   96 (181)
T ss_dssp             CSEEEECCCGGGHHHHHH---HHHHTTCEEEE
T ss_pred             cceeeccccccccccccc---cccccchhhhc
Confidence            899998766444444333   33444544544

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

Probab=90.27  E-value=1.2  Score=27.47  Aligned_cols=76  Identities=11%  Similarity=0.098  Sum_probs=53.3

Q ss_pred             EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCC
Q 029836           46 KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVG  123 (187)
Q Consensus        46 ~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~g  123 (187)
                      +|..||-++...+..+..++..|.  .+. ...+..+.+..+.     ...||+|++|..  ..+-.++++.+...-..-
T Consensus         4 ~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~~~-----~~~~dliilD~~mp~~~G~~~~~~i~~~~~~~   75 (128)
T d1yioa2           4 TVFVVDDDMSVREGLRNLLRSAGF--EVE-TFDCASTFLEHRR-----PEQHGCLVLDMRMPGMSGIELQEQLTAISDGI   75 (128)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHCC-----TTSCEEEEEESCCSSSCHHHHHHHHHHTTCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCC--Ccc-ccccHHHHHHHHH-----hcCCCEeehhhhcccchhHHHHHHHHhhCCCC
Confidence            799999999999999999998775  343 3356666666653     568999999976  233456667666544444


Q ss_pred             eEEEEe
Q 029836          124 GVIGYD  129 (187)
Q Consensus       124 G~lv~~  129 (187)
                      -++++.
T Consensus        76 ~ii~lt   81 (128)
T d1yioa2          76 PIVFIT   81 (128)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            455554

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.23  E-value=0.54  Score=29.59  Aligned_cols=66  Identities=15%  Similarity=0.124  Sum_probs=47.9

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDN--YVNYHKRLIE  118 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~--~~~~~~~~~~  118 (187)
                      +.+|..||-++......++.++..|.  ++. ...+..+.+..+      ...||+|++|.....  =.++.+.+++
T Consensus         7 g~rILvVDD~~~~~~~l~~~L~~~G~--~v~-~a~~g~eal~~l------~~~~dlillD~~mP~~dG~el~~~ir~   74 (134)
T d1dcfa_           7 GLKVLVMDENGVSRMVTKGLLVHLGC--EVT-TVSSNEECLRVV------SHEHKVVFMDVCMPGVENYQIALRIHE   74 (134)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHC------CTTCSEEEEECCSSTTTTTHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHh------hcCCCeEEEEeccCCCchHHHHHHHHH
Confidence            47999999999999999999999876  444 446676766654      457999999986332  2345555543

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=90.19  E-value=1.2  Score=27.35  Aligned_cols=76  Identities=14%  Similarity=0.037  Sum_probs=53.5

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHhccc
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIELVK  121 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~~L~  121 (187)
                      +.+|..||-++...+..+..++..|.  ++. ...++.+.+..+.     ..+||+|++|...  .+=.++++.+... .
T Consensus         3 ~~~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~~~-----~~~~dlvi~D~~mp~~~G~e~~~~lr~~-~   73 (123)
T d1dbwa_           3 DYTVHIVDDEEPVRKSLAFMLTMNGF--AVK-MHQSAEAFLAFAP-----DVRNGVLVTDLRMPDMSGVELLRNLGDL-K   73 (123)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHGG-----GCCSEEEEEECCSTTSCHHHHHHHHHHT-T
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----hcCCcEEEEeccCccccchHHHHHHHhc-C
Confidence            46899999999999999999999876  444 3456666666553     4579999999863  2335667776653 4


Q ss_pred             CCe-EEEE
Q 029836          122 VGG-VIGY  128 (187)
Q Consensus       122 ~gG-~lv~  128 (187)
                      +.- ++++
T Consensus        74 ~~~~iI~l   81 (123)
T d1dbwa_          74 INIPSIVI   81 (123)
T ss_dssp             CCCCEEEE
T ss_pred             CCCeEEEE
Confidence            444 4443

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=90.16  E-value=2.1  Score=29.91  Aligned_cols=84  Identities=13%  Similarity=0.027  Sum_probs=52.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHH-HHcCCCCceEEEeCCchHH--HHHHhhcc-c
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPII-QKAGVAHKIDFREGPALPL--LDQLIQDE-K   92 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~-~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~   92 (187)
                      .+.|++|-.|++. .++..+++.+. .+++|+.++.+++.+..+.+.+ ++.+  .++..+++|..+.  +..+.+.. .
T Consensus         7 l~gK~alITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (260)
T d1h5qa_           7 FVNKTIIVTGGNR-GIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDA   83 (260)
T ss_dssp             CTTEEEEEETTTS-HHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence            3578889999654 44555555442 2589999999988776655555 3334  4688888886432  22221111 0


Q ss_pred             CCCceeEEEEcC
Q 029836           93 YHGTFDFVFVDA  104 (187)
Q Consensus        93 ~~~~~D~v~~d~  104 (187)
                      ..+..|+++..+
T Consensus        84 ~~g~iDilVnnA   95 (260)
T d1h5qa_          84 DLGPISGLIANA   95 (260)
T ss_dssp             HSCSEEEEEECC
T ss_pred             HhCCCcEecccc
Confidence            157899988764

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=89.87  E-value=2.2  Score=29.73  Aligned_cols=82  Identities=17%  Similarity=0.199  Sum_probs=53.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cCCC
Q 029836           20 AKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KYHG   95 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~~~   95 (187)
                      +|.+|-.|++. .++..+++.+. .+.+|+.++.+++.++.+.+.++..+.  ++.++++|..+.  +..+.+.. ...+
T Consensus         2 gKValITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           2 SEVALVTGATS-GIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            34567777554 44555555442 258999999999999988888887764  688888886432  22221111 1147


Q ss_pred             ceeEEEEcC
Q 029836           96 TFDFVFVDA  104 (187)
Q Consensus        96 ~~D~v~~d~  104 (187)
                      +.|+++..+
T Consensus        79 ~iDilVnnA   87 (257)
T d2rhca1          79 PVDVLVNNA   87 (257)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEecc
Confidence            899998764

>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Nitrate/nitrite response regulator (NarL), receiver domain
species: Escherichia coli [TaxId: 562]

Probab=89.76  E-value=1.4  Score=27.57  Aligned_cols=77  Identities=16%  Similarity=0.103  Sum_probs=50.4

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEE--EeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHhcc
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDF--REGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIELV  120 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~~L  120 (187)
                      .+|..||-++...+..+..++..+   .+..  ...+..+.+..+.     ...||+|++|...  .+=.+.++.+.+.-
T Consensus         3 i~VLiVDD~~~~r~~l~~~L~~~~---~~~~v~~a~~~~~al~~~~-----~~~~DlvllD~~mP~~~G~el~~~ir~~~   74 (138)
T d1a04a2           3 ATILLIDDHPMLRTGVKQLISMAP---DITVVGEASNGEQGIELAE-----SLDPDLILLDLNMPGMNGLETLDKLREKS   74 (138)
T ss_dssp             EEEEEECSCHHHHHHHHHHHTTCT---TEEEEEEESSHHHHHHHHH-----HHCCSEEEEETTSTTSCHHHHHHHHHHSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHH-----hcCCCEEEEecCCCCCCHHHHHHHHHhhC
Confidence            578999999998888888776543   3332  3566766666553     3479999999763  23456777776543


Q ss_pred             cCCeEEEEe
Q 029836          121 KVGGVIGYD  129 (187)
Q Consensus       121 ~~gG~lv~~  129 (187)
                      ..--++++.
T Consensus        75 ~~~~vivlt   83 (138)
T d1a04a2          75 LSGRIVVFS   83 (138)
T ss_dssp             CCSEEEEEE
T ss_pred             CCCCEEEEE
Confidence            333455554

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=89.72  E-value=1.8  Score=30.62  Aligned_cols=82  Identities=13%  Similarity=0.049  Sum_probs=52.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH------HHHHhhc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL------LDQLIQD   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~~~~~   90 (187)
                      .+++++|-.|+..| ++..+++.+. .+.+|+.++.+.+.++.+.+.+....- .++.+++.|..+.      .......
T Consensus        23 l~gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g-~~~~~~~~D~~~~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          23 FQGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG-NKVHAIQCDVRDPDMVQNTVSELIKV  100 (294)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcC-CceEEEEecccChHHHHHHhhhhhhh
Confidence            35578999986554 5555554442 258999999999888776665544321 4677788776432      1122211


Q ss_pred             ccCCCceeEEEEcC
Q 029836           91 EKYHGTFDFVFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~v~~d~  104 (187)
                         .+..|+++...
T Consensus       101 ---~g~iDilvnnA  111 (294)
T d1w6ua_         101 ---AGHPNIVINNA  111 (294)
T ss_dssp             ---TCSCSEEEECC
T ss_pred             ---ccccchhhhhh
Confidence               57889988764

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.69  E-value=2.3  Score=29.73  Aligned_cols=82  Identities=17%  Similarity=0.091  Sum_probs=54.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH------HHHHHhhcc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP------LLDQLIQDE   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~~   91 (187)
                      +.+++|-.|++.|. +..+++.+. .+.+|+.++.+++.++.+.+.+...+.  ++..+.+|..+      .+....+..
T Consensus         7 kgK~alVTGas~GI-G~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           7 KAKTVLVTGGTKGI-GHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             TTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            67889998876554 444444432 268999999999999888888877653  68888887643      222222110


Q ss_pred             cCCCceeEEEEcCC
Q 029836           92 KYHGTFDFVFVDAD  105 (187)
Q Consensus        92 ~~~~~~D~v~~d~~  105 (187)
                        .+..|+++..+.
T Consensus        84 --~g~idilvnnAG   95 (259)
T d1xq1a_          84 --GGKLDILINNLG   95 (259)
T ss_dssp             --TTCCSEEEEECC
T ss_pred             --CCCccccccccc
Confidence              357899987643

>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Methylesterase CheB, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.60  E-value=1.5  Score=27.53  Aligned_cols=76  Identities=14%  Similarity=0.086  Sum_probs=50.9

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEE-EeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHhccc
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDF-REGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVK  121 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~-~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~  121 (187)
                      -+|..||-++...+..+..++..|.  ...+ ...|..+.+..+.     ...+|+|++|....  +=.++++.+++. .
T Consensus         4 irVLiVDD~~~~r~~l~~~L~~~g~--~~~v~~a~~g~~al~~~~-----~~~pDlvllDi~MP~~dG~e~~~~ir~~-~   75 (140)
T d1a2oa1           4 IRVLSVDDSALMRQIMTEIINSHSD--MEMVATAPDPLVARDLIK-----KFNPDVLTLDVEMPRMDGLDFLEKLMRL-R   75 (140)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTSTT--EEEEEEESSHHHHHHHHH-----HHCCSEEEEECCCSSSCHHHHHHHHHHS-S
T ss_pred             CEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEEECCHHHHHHHHH-----hcCCCEEEEcCCCCCCCHHHHHHHHHHh-C
Confidence            5799999999999999999987653  2222 3467766666553     35799999998633  334566666554 4


Q ss_pred             CCeEEEE
Q 029836          122 VGGVIGY  128 (187)
Q Consensus       122 ~gG~lv~  128 (187)
                      +.-.+++
T Consensus        76 ~~~~i~i   82 (140)
T d1a2oa1          76 PMPVVMV   82 (140)
T ss_dssp             CCCEEEE
T ss_pred             CCCcEEE
Confidence            5444443

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.58  E-value=0.88  Score=32.97  Aligned_cols=81  Identities=17%  Similarity=0.165  Sum_probs=48.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCch----HHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhccc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKE----HYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEK   92 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~----~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~   92 (187)
                      .+++++|-+| |+|.++.++.+.+- .+.+|+++|....    .+...+........ .+++++.+|..+.......   
T Consensus        14 ~~~k~iLVTG-~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~d~~~~~~~---   88 (341)
T d1sb8a_          14 AQPKVWLITG-VAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQW-SNFKFIQGDIRNLDDCNNA---   88 (341)
T ss_dssp             HSCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHH-TTEEEEECCTTSHHHHHHH---
T ss_pred             CCCCEEEEec-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhccc-CCeeEEeeccccccccccc---
Confidence            4688999998 89999999887662 3579999985322    22222222111111 5789999998765332211   


Q ss_pred             CCCceeEEEEcC
Q 029836           93 YHGTFDFVFVDA  104 (187)
Q Consensus        93 ~~~~~D~v~~d~  104 (187)
                       ....+.|+..+
T Consensus        89 -~~~~~~v~~~~   99 (341)
T d1sb8a_          89 -CAGVDYVLHQA   99 (341)
T ss_dssp             -HTTCSEEEECC
T ss_pred             -ccccccccccc
Confidence             23455655443

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=89.53  E-value=1.4  Score=26.93  Aligned_cols=76  Identities=16%  Similarity=0.024  Sum_probs=51.1

Q ss_pred             EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcccCC
Q 029836           46 KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKVG  123 (187)
Q Consensus        46 ~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~g  123 (187)
                      +|..||-++...+..+..++..|.  .+. ...+..+.+..+.     ...||+|++|....  +-.++++.+...-+.=
T Consensus         2 rILvVDDd~~~~~~l~~~L~~~G~--~v~-~a~~g~eal~~l~-----~~~~dliilD~~mP~~~G~e~~~~i~~~~~~~   73 (119)
T d2pl1a1           2 RVLVVEDNALLRHHLKVQIQDAGH--QVD-DAEDAKEADYYLN-----EHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSL   73 (119)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSCCSSSCHHHHHHHHHHTTCCS
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hcccceeehhccCCCchhHHHHHHHHhcCccc
Confidence            578899999999999999998775  333 4456666666554     45799999997632  3355666665543222


Q ss_pred             eEEEEe
Q 029836          124 GVIGYD  129 (187)
Q Consensus       124 G~lv~~  129 (187)
                      -++++.
T Consensus        74 pvi~lt   79 (119)
T d2pl1a1          74 PILVLT   79 (119)
T ss_dssp             CEEEEE
T ss_pred             ceEeee
Confidence            345543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=89.46  E-value=0.9  Score=32.06  Aligned_cols=83  Identities=22%  Similarity=0.230  Sum_probs=52.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~   93 (187)
                      .+.+.+|-.|++.| ++..+++.+. .+.+|+.+|.+++.++.+.+.+..   ..++.++++|..+.  ...+.+.. ..
T Consensus         4 L~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           4 LQDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            46789999997655 4555554442 358999999999888777666643   34677888876432  22221111 01


Q ss_pred             CCceeEEEEcC
Q 029836           94 HGTFDFVFVDA  104 (187)
Q Consensus        94 ~~~~D~v~~d~  104 (187)
                      .+..|+++...
T Consensus        80 ~g~iD~lVnnA   90 (268)
T d2bgka1          80 HGKLDIMFGNV   90 (268)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCcceecccc
Confidence            46889998764

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.21  E-value=1.5  Score=26.90  Aligned_cols=74  Identities=14%  Similarity=-0.002  Sum_probs=52.0

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcccC
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKV  122 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~  122 (187)
                      .+|..||-++......++.++..|.  ++. ...+..+.+..+.     ...||+|++|....  +=.++++.+.+. .+
T Consensus         4 ~~ILIVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~a~~~l~-----~~~~dlii~D~~mp~~~G~el~~~l~~~-~~   74 (123)
T d1krwa_           4 GIVWVVDDDSSIRWVLERALAGAGL--TCT-TFENGNEVLAALA-----SKTPDVLLSDIRMPGMDGLALLKQIKQR-HP   74 (123)
T ss_dssp             CEEEEESSSHHHHHHHHHHHHHTTC--EEE-EESSSHHHHHHHT-----TCCCSEEEECCSSSSSTTHHHHHHHHHH-SS
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHH-----hCCCCEEEehhhcCCchHHHHHHHHHHh-CC
Confidence            5789999999999999999998876  444 3566767666664     56899999997632  335566666543 34


Q ss_pred             CeEEE
Q 029836          123 GGVIG  127 (187)
Q Consensus       123 gG~lv  127 (187)
                      .--++
T Consensus        75 ~~piI   79 (123)
T d1krwa_          75 MLPVI   79 (123)
T ss_dssp             SCCEE
T ss_pred             CCeEE
Confidence            43333

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=89.08  E-value=1.5  Score=26.77  Aligned_cols=78  Identities=12%  Similarity=0.073  Sum_probs=52.9

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcccC
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKV  122 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~  122 (187)
                      -+|..||-++...+..+..++..|.  ++.. ..+..+.+..+..    ...||+|++|....  +=.++++.++..-+.
T Consensus         3 ~rILvVdDd~~~~~~l~~~L~~~g~--~v~~-~~~~~~al~~l~~----~~~~dliilD~~lp~~~G~el~~~ir~~~~~   75 (118)
T d2b4aa1           3 FRVTLVEDEPSHATLIQYHLNQLGA--EVTV-HPSGSAFFQHRSQ----LSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQ   75 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEEE-ESSHHHHHHTGGG----GGSCSEEEEETTCTTSCHHHHHHHHTTSSSC
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCC--CeEE-ECCHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence            5789999999999999999999775  3443 3455555554431    34699999998633  345667776654333


Q ss_pred             CeEEEEe
Q 029836          123 GGVIGYD  129 (187)
Q Consensus       123 gG~lv~~  129 (187)
                      -.+++++
T Consensus        76 ~pii~lt   82 (118)
T d2b4aa1          76 PSVLILT   82 (118)
T ss_dssp             CEEEEEE
T ss_pred             CcEEEEE
Confidence            4566654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=88.90  E-value=1.7  Score=30.28  Aligned_cols=81  Identities=19%  Similarity=0.201  Sum_probs=52.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH------HHHHHhhc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP------LLDQLIQD   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~   90 (187)
                      .+.+.+|-.|++.| ++..+++.+. .+.+|+.++.+++.++.+.+.+.   ...++.++++|..+      ++....+.
T Consensus         4 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           4 LDGKVAIITGGTLG-IGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46788888886554 4555554442 26899999999988877776663   23578888888753      22222221


Q ss_pred             ccCCCceeEEEEcCC
Q 029836           91 EKYHGTFDFVFVDAD  105 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~  105 (187)
                         .+..|+++..+.
T Consensus        80 ---~G~iDiLVnnAg   91 (251)
T d1zk4a1          80 ---FGPVSTLVNNAG   91 (251)
T ss_dssp             ---HSSCCEEEECCC
T ss_pred             ---hCCceEEEeccc
Confidence               468999887643

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.84  E-value=3.6  Score=30.81  Aligned_cols=120  Identities=13%  Similarity=0.153  Sum_probs=73.8

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-chHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836            4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDIT-KEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +|.+..+=+.++.+-.+...+-..+|...++..+ ..+.++.++++.+.- -.........+++.|.  .+.+...+. +
T Consensus        54 nPT~~~lE~~la~LE~~~~a~~~sSGmaAi~~~l-~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi--~~~~~~~~~-~  129 (393)
T d1n8pa_          54 NPNRENLERAVAALENAQYGLAFSSGSATTATIL-QSLPQGSHAVSIGDVYGGTHRYFTKVANAHGV--ETSFTNDLL-N  129 (393)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHH-HTSCSSCEEEEESSCCHHHHHHHHHTSTTTCS--CCEEESSHH-H
T ss_pred             ChHHHHHHHHHHHHhCCceEEEecCchhHHHhhh-hcccCCCeeeeeeeecccchhhhhhhhhcccc--eeEEeecch-H
Confidence            5777777777888888889999999887776544 445545677776543 3334455555555554  456665433 3


Q ss_pred             HHHHHhhcccCCCceeEEEEcCC------CcccHHHHHHHHhcc-cCCeEEEEeCcC
Q 029836           83 LLDQLIQDEKYHGTFDFVFVDAD------KDNYVNYHKRLIELV-KVGGVIGYDNTL  132 (187)
Q Consensus        83 ~l~~~~~~~~~~~~~D~v~~d~~------~~~~~~~~~~~~~~L-~~gG~lv~~~~~  132 (187)
                      .+....     .+.-.+|++-.+      ..+.....+.+.+.- +.|..+++||..
T Consensus       130 ~~~~~i-----~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~  181 (393)
T d1n8pa_         130 DLPQLI-----KENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTF  181 (393)
T ss_dssp             HHHHHS-----CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTT
T ss_pred             HHHHHh-----hhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCc
Confidence            344432     557789998754      233444444444333 467788888884

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.83  E-value=0.44  Score=35.47  Aligned_cols=78  Identities=19%  Similarity=0.123  Sum_probs=46.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCch-----------------HHHHHHHHHHHcCCCCceEEEeCCch
Q 029836           20 AKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKE-----------------HYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~-----------------~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      +++||-.| |+|+++.++++.+- .+.+|+++|.-..                 ..+.. +....... .+++++.+|..
T Consensus         1 g~kILVTG-atGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~i~~~~~Dl~   77 (393)
T d1i24a_           1 GSRVMVIG-GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRI-SRWKALTG-KSIELYVGDIC   77 (393)
T ss_dssp             -CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHH-HHHHHHHC-CCCEEEESCTT
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHH-HHHHhhcC-CCcEEEEccCC
Confidence            46888888 69999988876662 3579999983111                 11111 11111111 57899999986


Q ss_pred             H--HHHHHhhcccCCCceeEEEEcC
Q 029836           82 P--LLDQLIQDEKYHGTFDFVFVDA  104 (187)
Q Consensus        82 ~--~l~~~~~~~~~~~~~D~v~~d~  104 (187)
                      +  .+..+..    ..++|.|+--+
T Consensus        78 d~~~l~~~~~----~~~~d~ViHlA   98 (393)
T d1i24a_          78 DFEFLAESFK----SFEPDSVVHFG   98 (393)
T ss_dssp             SHHHHHHHHH----HHCCSEEEECC
T ss_pred             CHHHHHHHHH----hhcchheeccc
Confidence            4  3333321    23579888544

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.75  E-value=2.6  Score=29.17  Aligned_cols=79  Identities=14%  Similarity=0.132  Sum_probs=50.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH------HHHHHhhc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP------LLDQLIQD   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~   90 (187)
                      .+.+.+|-.|++.| ++..+++.+. .+.+|+.++.+++.++.+.+.+.     .++.++++|..+      .+....+.
T Consensus         4 L~gK~alITGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (244)
T d1nffa_           4 LTGKVALVSGGARG-MGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVTA   77 (244)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----CcceEEEeecCCHHHHHHHHHHHHHH
Confidence            46788999997665 4444444332 25899999999987766555442     467888887643      22233222


Q ss_pred             ccCCCceeEEEEcCC
Q 029836           91 EKYHGTFDFVFVDAD  105 (187)
Q Consensus        91 ~~~~~~~D~v~~d~~  105 (187)
                         .+..|+++..+.
T Consensus        78 ---~g~idilinnAG   89 (244)
T d1nffa_          78 ---FGGLHVLVNNAG   89 (244)
T ss_dssp             ---HSCCCEEEECCC
T ss_pred             ---hCCCeEEEECCc
Confidence               367899987643

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=88.70  E-value=1.8  Score=27.16  Aligned_cols=78  Identities=10%  Similarity=0.013  Sum_probs=51.9

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCcc--cHHHHHHHHhccc-
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDN--YVNYHKRLIELVK-  121 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~--~~~~~~~~~~~L~-  121 (187)
                      ++|..||-++...+..+..++..|.  ++. ...+..+.+..+.     ...||+|++|.....  -..++..+...-. 
T Consensus         2 arILiVDD~~~~~~~l~~~L~~~g~--~v~-~a~~~~eal~~~~-----~~~~dlil~D~~~p~~~G~~~~~~ir~~~~~   73 (139)
T d1w25a1           2 ARILVVDDIEANVRLLEAKLTAEYY--EVS-TAMDGPTALAMAA-----RDLPDIILLDVMMPGMDGFTVCRKLKDDPTT   73 (139)
T ss_dssp             CEEEEECSSTTHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHHHSTTT
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCC--EEE-EEccchhhhhhhh-----cccceeeeeeccccCCCchHHHHHhhhcccc
Confidence            6899999999999999999998775  343 4566766666554     357999999976332  3455555543211 


Q ss_pred             CC-eEEEEeC
Q 029836          122 VG-GVIGYDN  130 (187)
Q Consensus       122 ~g-G~lv~~~  130 (187)
                      +. -++++..
T Consensus        74 ~~~piI~lt~   83 (139)
T d1w25a1          74 RHIPVVLITA   83 (139)
T ss_dssp             TTSCEEEEEC
T ss_pred             cCCCEEEEEc
Confidence            11 2666544

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.67  E-value=3  Score=29.77  Aligned_cols=87  Identities=10%  Similarity=0.082  Sum_probs=54.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCC---CCceEEEeCCchHH--HHHHhhcc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGV---AHKIDFREGPALPL--LDQLIQDE   91 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~--l~~~~~~~   91 (187)
                      .+.+.+|-.|++.| ++..+++.+. .+.+|+.++.+++.++.+.+.+.....   ..++..+++|..+.  +..+.+..
T Consensus        10 L~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            46789999986655 4454444432 258999999999988877776765321   24788888876432  22221111


Q ss_pred             -cCCCceeEEEEcCC
Q 029836           92 -KYHGTFDFVFVDAD  105 (187)
Q Consensus        92 -~~~~~~D~v~~d~~  105 (187)
                       ...+..|+++..+.
T Consensus        89 ~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          89 LDTFGKINFLVNNGG  103 (297)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCeEEEEeecc
Confidence             01367999987643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=88.63  E-value=0.34  Score=35.36  Aligned_cols=80  Identities=19%  Similarity=0.115  Sum_probs=51.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYH   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~   94 (187)
                      .+.++||-+| |+|+++.++++.+- .+..|++++.++......   +......++++++.+|..+.  +.....    .
T Consensus         6 ~~~KkILVTG-~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~---~~~~~~~~~i~~~~~Dl~d~~~l~~~~~----~   77 (356)
T d1rkxa_           6 WQGKRVFVTG-HTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSL---FETARVADGMQSEIGDIRDQNKLLESIR----E   77 (356)
T ss_dssp             HTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCH---HHHTTTTTTSEEEECCTTCHHHHHHHHH----H
T ss_pred             hCCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCCCccHHH---HhhhhcccCCeEEEeeccChHhhhhhhh----h
Confidence            5789999998 67998888876662 357899999876543322   23333446899999987542  223221    2


Q ss_pred             CceeEEEEcCC
Q 029836           95 GTFDFVFVDAD  105 (187)
Q Consensus        95 ~~~D~v~~d~~  105 (187)
                      ..+|.|+.-+.
T Consensus        78 ~~~~~v~~~aa   88 (356)
T d1rkxa_          78 FQPEIVFHMAA   88 (356)
T ss_dssp             HCCSEEEECCS
T ss_pred             chhhhhhhhhc
Confidence            35677776544

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=88.62  E-value=1.2  Score=27.22  Aligned_cols=66  Identities=15%  Similarity=0.151  Sum_probs=47.4

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIE  118 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~  118 (187)
                      .+|..||-++...+..++.++..|.  ++. ...++.+.+..+.     ...||+|++|....  +=.++++.+..
T Consensus         2 krILiVDD~~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~~~-----~~~~dlil~D~~mp~~dG~el~~~ir~   69 (123)
T d1mb3a_           2 KKVLIVEDNELNMKLFHDLLEAQGY--ETL-QTREGLSALSIAR-----ENKPDLILMDIQLPEISGLEVTKWLKE   69 (123)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHH-----HHCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEEeccCCCcHHHHHHHHHh
Confidence            4789999999999999999999876  333 3467766666554     34799999997632  33556666654

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=88.55  E-value=1.6  Score=26.47  Aligned_cols=75  Identities=16%  Similarity=0.070  Sum_probs=50.9

Q ss_pred             EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcccCC
Q 029836           46 KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKVG  123 (187)
Q Consensus        46 ~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~g  123 (187)
                      +|..||-++...+..+..++..|.  ++. ...+..+.+..+.     ...||+|++|....  +-.+.++.+.+ .+.-
T Consensus         2 rILiVdDd~~~~~~l~~~L~~~g~--~v~-~a~~~~eal~~~~-----~~~~dlillD~~mp~~~G~~~~~~i~~-~~~~   72 (117)
T d2a9pa1           2 KILIVDDEKPISDIIKFNMTKEGY--EVV-TAFNGREALEQFE-----AEQPDIIILDLMLPEIDGLEVAKTIRK-TSSV   72 (117)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEECSSCSSSCHHHHHHHHHT-TCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hcCCCEEEeccccCCCCccHHHHHHHh-CCCC
Confidence            688899999999999999998775  344 4466666666654     45899999997632  23455565544 2333


Q ss_pred             eEEEEe
Q 029836          124 GVIGYD  129 (187)
Q Consensus       124 G~lv~~  129 (187)
                      -++++.
T Consensus        73 pvI~lt   78 (117)
T d2a9pa1          73 PILMLS   78 (117)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            355554

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.34  E-value=2.8  Score=28.99  Aligned_cols=78  Identities=12%  Similarity=0.164  Sum_probs=48.4

Q ss_pred             cCCCEEEEEccc----ccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH------HHHH
Q 029836           18 INAKNTMEIGVF----TGY-SLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP------LLDQ   86 (187)
Q Consensus        18 ~~~~~vLeiG~g----~G~-~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~   86 (187)
                      .+.+++|-.|++    .|. .+..|++.   +++|+..+.++...+.+.+.....+   +..+++.|..+      .+..
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~---Ga~V~i~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~   79 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEA---GAEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAG   79 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHC---CCEEEEEeCcHHHHHHHHHhhhccC---cccccccccCCHHHHHHHHHH
Confidence            367899999954    343 33334433   5789999999887777776665543   45567776543      2222


Q ss_pred             HhhcccCCCceeEEEEcC
Q 029836           87 LIQDEKYHGTFDFVFVDA  104 (187)
Q Consensus        87 ~~~~~~~~~~~D~v~~d~  104 (187)
                      ..+.   .+..|+++...
T Consensus        80 ~~~~---~g~iDilVnna   94 (256)
T d1ulua_          80 VKEA---FGGLDYLVHAI   94 (256)
T ss_dssp             HHHH---HSSEEEEEECC
T ss_pred             HHHh---cCCceEEEecc
Confidence            2221   36899888653

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=88.27  E-value=1.3  Score=32.61  Aligned_cols=82  Identities=17%  Similarity=0.184  Sum_probs=50.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhC--CCCCEEEEEeC---------CchHHHHHHHHHHHcC------CCCceEEEeCCchH
Q 029836           20 AKNTMEIGVFTGYSLLATALAI--PDDGKILALDI---------TKEHYEKGLPIIQKAG------VAHKIDFREGPALP   82 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~--~~~~~v~~vd~---------~~~~~~~a~~~~~~~~------~~~~i~~~~~d~~~   82 (187)
                      .++||-.| |+|+++.++.+.+  ..+.+|+++|.         ..+..+.....+....      ...++.++.+|..+
T Consensus         2 ~MKVLITG-~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d   80 (383)
T d1gy8a_           2 HMRVLVCG-GAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (383)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             cCEEEEeC-CCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence            46788776 8999998887765  23678999983         1122223333333221      12468899999865


Q ss_pred             --HHHHHhhcccCCCceeEEEEcCC
Q 029836           83 --LLDQLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        83 --~l~~~~~~~~~~~~~D~v~~d~~  105 (187)
                        .+......   ...+|.|+.-+.
T Consensus        81 ~~~l~~~~~~---~~~~d~ViH~Aa  102 (383)
T d1gy8a_          81 EDFLNGVFTR---HGPIDAVVHMCA  102 (383)
T ss_dssp             HHHHHHHHHH---SCCCCEEEECCC
T ss_pred             HHHhhhhhhc---cceeehhhcccc
Confidence              23433322   356899987654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.19  E-value=0.79  Score=32.13  Aligned_cols=63  Identities=10%  Similarity=-0.050  Sum_probs=44.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC----CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836           19 NAKNTMEIGVFTGYSLLATALAI----PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~----~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      +.+.+|-.|++.| ++..+++.+    ..+.+|+.++.+++.++.+.+.+...+...++.++.+|..+
T Consensus         5 ~gKvalITGas~G-IG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~   71 (259)
T d1oaaa_           5 GCAVCVLTGASRG-FGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT   71 (259)
T ss_dssp             BSEEEEESSCSSH-HHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCC
Confidence            3455566665554 455555433    34689999999999998888888766554678889988654

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=87.81  E-value=0.85  Score=29.63  Aligned_cols=78  Identities=14%  Similarity=0.024  Sum_probs=43.8

Q ss_pred             EEEEEcccc-cHH-HHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836           22 NTMEIGVFT-GYS-LLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF   99 (187)
Q Consensus        22 ~vLeiG~g~-G~~-~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~   99 (187)
                      +|.-||||. |.. -.......+ +..++.+|.+++..+...+.   .+...    ...|..+.+.         ..+|+
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~-~~~~~~~d~~~~~~~~~~~~---~~~~~----~~~~~~~ll~---------~~iD~   65 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWP-DIELVLCTRNPKVLGTLATR---YRVSA----TCTDYRDVLQ---------YGVDA   65 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTST-TEEEEEECSCHHHHHHHHHH---TTCCC----CCSSTTGGGG---------GCCSE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHh---ccccc----ccccHHHhcc---------cccce
Confidence            677899864 211 122344444 56778899988766555443   33321    2345554442         35899


Q ss_pred             EEEcCCCcccHHHHHHH
Q 029836          100 VFVDADKDNYVNYHKRL  116 (187)
Q Consensus       100 v~~d~~~~~~~~~~~~~  116 (187)
                      |++-.+...+.+....+
T Consensus        66 V~I~tp~~~H~~~~~~a   82 (167)
T d1xeaa1          66 VMIHAATDVHSTLAAFF   82 (167)
T ss_dssp             EEECSCGGGHHHHHHHH
T ss_pred             ecccccccccccccccc
Confidence            99877655554444443

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.79  E-value=2.8  Score=28.91  Aligned_cols=77  Identities=14%  Similarity=0.055  Sum_probs=48.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYH   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~   94 (187)
                      .+++++|-.|++.| ++..+++.+. .+.+|+.++.+++.++.+.+.+      .++..++.|..+  ...+..++   -
T Consensus         3 l~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~---~   72 (242)
T d1cyda_           3 FSGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGG---I   72 (242)
T ss_dssp             CTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTT---C
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHH---c
Confidence            36789998887655 4444444432 3689999999987665544332      356677777654  23444332   4


Q ss_pred             CceeEEEEcC
Q 029836           95 GTFDFVFVDA  104 (187)
Q Consensus        95 ~~~D~v~~d~  104 (187)
                      ++.|+++..+
T Consensus        73 g~iDilVnnA   82 (242)
T d1cyda_          73 GPVDLLVNNA   82 (242)
T ss_dssp             CCCSEEEECC
T ss_pred             CCCeEEEECC
Confidence            7899998764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.71  E-value=3.3  Score=29.08  Aligned_cols=86  Identities=20%  Similarity=0.256  Sum_probs=57.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEEEeCCchHH--HHHHhhcc-c
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPL--LDQLIQDE-K   92 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~--l~~~~~~~-~   92 (187)
                      .+++++|-.|++.| ++..+++.+. .+.+|+.+|.+++.++.+.+.+.+.+.. .++..+++|..+.  ...+.+.. .
T Consensus         2 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           2 FSGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             CTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            35788888887655 4555444442 2589999999999999988888887653 5788888886432  22221111 0


Q ss_pred             CCCceeEEEEcC
Q 029836           93 YHGTFDFVFVDA  104 (187)
Q Consensus        93 ~~~~~D~v~~d~  104 (187)
                      ..+..|+++..+
T Consensus        81 ~~G~iDilVnnA   92 (274)
T d1xhla_          81 KFGKIDILVNNA   92 (274)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HcCCceEEEeec
Confidence            136789998763

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.61  E-value=3.3  Score=28.95  Aligned_cols=82  Identities=16%  Similarity=0.204  Sum_probs=51.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCC-chHHHHHHHHHHHcCCCCceEEEeCCchH------HHHHHhh
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDIT-KEHYEKGLPIIQKAGVAHKIDFREGPALP------LLDQLIQ   89 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~   89 (187)
                      .+++.+|-.|+..| ++..+++.+. .+.+|+.++.+ ++.++.+.+.+++.+.  ++.++++|..+      .+....+
T Consensus        16 L~gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   92 (272)
T d1g0oa_          16 LEGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVK   92 (272)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHH
Confidence            35688888887555 4555544442 25799999886 4566666777777664  67888887643      2222222


Q ss_pred             cccCCCceeEEEEcCC
Q 029836           90 DEKYHGTFDFVFVDAD  105 (187)
Q Consensus        90 ~~~~~~~~D~v~~d~~  105 (187)
                      .   .+..|+++....
T Consensus        93 ~---~g~idilV~nag  105 (272)
T d1g0oa_          93 I---FGKLDIVCSNSG  105 (272)
T ss_dssp             H---HSCCCEEEECCC
T ss_pred             H---hCCCCccccccc
Confidence            1   367899887643

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=87.57  E-value=1  Score=28.69  Aligned_cols=36  Identities=17%  Similarity=-0.090  Sum_probs=26.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHH
Q 029836           21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHY   57 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~   57 (187)
                      ++|.-|| |.|..+..+++.+. .+..|+..|.++...
T Consensus        10 ~kI~iIG-g~G~mG~~la~~L~~~G~~V~~~d~~~~~~   46 (152)
T d2pv7a2          10 HKIVIVG-GYGKLGGLFARYLRASGYPISILDREDWAV   46 (152)
T ss_dssp             CCEEEET-TTSHHHHHHHHHHHTTTCCEEEECTTCGGG
T ss_pred             CeEEEEc-CCCHHHHHHHHHHHHcCCCcEecccccccc
Confidence            5899998 56778888777664 247899999887644

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.41  E-value=3.6  Score=30.60  Aligned_cols=123  Identities=15%  Similarity=0.153  Sum_probs=73.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchH-HHHHHHHHHHcCCCCceEEEeCCch
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEH-YEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~-~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      -+|....+=+.++.+-.....+-..+|...++. ++..+.++.+|++.+.--.. ....++.++..|.  .++++..+..
T Consensus        47 ~nPt~~~le~~la~LE~~~~a~~fsSGMaAisa-ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi--~~~~~d~~~~  123 (380)
T d1ibja_          47 GNPTRDALESLLAKLDKADRAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV--VVKRVNTTKL  123 (380)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTC--EEEEECTTSH
T ss_pred             CChHHHHHHHHHHHHcCCceEEehhhHHHHHHH-HHHhhCCCCEEEEEecccccccchhhhhhccccc--cccccCcchH
Confidence            367777778888888888888888888877763 45555556788777654433 3444555555555  4666665544


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc-CCeEEEEeCcCC
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK-VGGVIGYDNTLW  133 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~~  133 (187)
                      +.+....     ...-.+||+-.+  +.-....++.+.++-+ .|-.+++||+.-
T Consensus       124 ~~~~~ai-----~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~a  173 (380)
T d1ibja_         124 DEVAAAI-----GPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIM  173 (380)
T ss_dssp             HHHHHHC-----CSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTT
T ss_pred             HHHHHHh-----ccCccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccc
Confidence            4444332     456789998754  2111112223333333 455777787753

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=87.33  E-value=2.9  Score=29.05  Aligned_cols=86  Identities=16%  Similarity=0.163  Sum_probs=50.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCC-chHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-c
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDIT-KEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-K   92 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~   92 (187)
                      .+.+.+|-.|++.| ++..+++.+. .+.+|+.++.+ ++.++.+.+.+...+- .++.++..|..+.  +..+.+.. .
T Consensus         2 L~gK~alITGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (260)
T d1x1ta1           2 LKGKVAVVTGSTSG-IGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG-VKVLYDGADLSKGEAVRGLVDNAVR   79 (260)
T ss_dssp             CTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHT-SCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            36788887776655 4455544442 25899999986 4566666665544321 4788888886531  22221111 0


Q ss_pred             CCCceeEEEEcCC
Q 029836           93 YHGTFDFVFVDAD  105 (187)
Q Consensus        93 ~~~~~D~v~~d~~  105 (187)
                      ..+..|+++..+.
T Consensus        80 ~~G~iDiLVnnAG   92 (260)
T d1x1ta1          80 QMGRIDILVNNAG   92 (260)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             HhCCCcEEEeecc
Confidence            1368999987643

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.16  E-value=2.1  Score=26.14  Aligned_cols=76  Identities=13%  Similarity=0.069  Sum_probs=50.9

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcccC
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKV  122 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~  122 (187)
                      .+|..||-++...+..+..++..|.  ++. ...+..+.+..+.     ...||+|++|....  +-.++++.+... ..
T Consensus         3 p~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~-----~~~~dlii~D~~mp~~~G~~~~~~~r~~-~~   73 (121)
T d1xhfa1           3 PHILIVEDELVTRNTLKSIFEAEGY--DVF-EATDGAEMHQILS-----EYDINLVIMDINLPGKNGLLLARELREQ-AN   73 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSSCSSSCHHHHHHHHHHH-CC
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCC--EEE-EECChHHHHHHHH-----hcCCCEEEeecccCCccCcHHHHHHHhc-CC
Confidence            4899999999999999999998775  333 4456666666664     45899999997632  224455554432 22


Q ss_pred             CeEEEEe
Q 029836          123 GGVIGYD  129 (187)
Q Consensus       123 gG~lv~~  129 (187)
                      =.++++.
T Consensus        74 ~pii~lt   80 (121)
T d1xhfa1          74 VALMFLT   80 (121)
T ss_dssp             CEEEEEE
T ss_pred             CcEEEEE
Confidence            2355544

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=87.04  E-value=0.75  Score=30.53  Aligned_cols=93  Identities=11%  Similarity=0.062  Sum_probs=58.0

Q ss_pred             CCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           20 AKNTMEIGVF--TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        20 ~~~vLeiG~g--~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ..+||-.|..  .|..++++++.+  +.+|+++.-+++..+.+++    .|..   .++.-+..+....+.     ...+
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~----lGad---~vi~~~~~~~~~~l~-----~~~~   97 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKS----LGAS---RVLPRDEFAESRPLE-----KQVW   97 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTEE---EEEEGGGSSSCCSSC-----CCCE
T ss_pred             CCcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHh----hccc---cccccccHHHHHHHH-----hhcC
Confidence            3578876643  556778889886  5899999999988766653    3331   222211111111111     3457


Q ss_pred             eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836           98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN  130 (187)
Q Consensus        98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      |.++ |..   -...+....+.|+++|.++.-.
T Consensus        98 ~~vv-D~V---gg~~~~~~l~~l~~~Griv~~G  126 (177)
T d1o89a2          98 AGAI-DTV---GDKVLAKVLAQMNYGGCVAACG  126 (177)
T ss_dssp             EEEE-ESS---CHHHHHHHHHTEEEEEEEEECC
T ss_pred             CeeE-EEc---chHHHHHHHHHhccccceEeec
Confidence            8764 543   2356888999999999998743

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.93  E-value=3.5  Score=28.61  Aligned_cols=84  Identities=15%  Similarity=0.103  Sum_probs=55.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~   93 (187)
                      .+.+.+|-.|++. .++..+++.+. .+++|+.++.+++.++.+.+.++..+  .++.++++|..+.  ...+.+.. ..
T Consensus         9 L~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~   85 (255)
T d1fmca_           9 LDGKCAIITGAGA-GIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             CTTCEEEETTTTS-HHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            3678888887554 45555555442 35899999999999998888888765  4788888886432  22221111 01


Q ss_pred             CCceeEEEEcC
Q 029836           94 HGTFDFVFVDA  104 (187)
Q Consensus        94 ~~~~D~v~~d~  104 (187)
                      .+..|+++..+
T Consensus        86 ~g~iDilvnnA   96 (255)
T d1fmca_          86 LGKVDILVNNA   96 (255)
T ss_dssp             HSSCCEEEECC
T ss_pred             cCCCCEeeeCC
Confidence            36899998764

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.49  E-value=2.4  Score=26.28  Aligned_cols=79  Identities=19%  Similarity=0.151  Sum_probs=53.3

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHhccc
Q 029836           44 DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIELVK  121 (187)
Q Consensus        44 ~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~~L~  121 (187)
                      +.+|..||-++...+..++.++..|.  ++. ...++.+.+..+.     ...||+|++|...  .+-.++++.+...-+
T Consensus         8 ~~~ILiVDD~~~~~~~l~~~L~~~g~--~v~-~a~~g~ea~~~~~-----~~~~dlillD~~mP~~dG~el~~~ir~~~~   79 (133)
T d2ayxa1           8 DMMILVVDDHPINRRLLADQLGSLGY--QCK-TANDGVDALNVLS-----KNHIDIVLSDVNMPNMDGYRLTQRIRQLGL   79 (133)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHHTS--EEE-EECCSHHHHHHHH-----HSCCSEEEEEESSCSSCCHHHHHHHHHHHC
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC--EEE-EECcHHHHHHHHh-----ccCceEEEEeccCCCCCHHHHHHHHHHhCC
Confidence            46899999999999999999999876  343 4566666666554     4589999999752  233456666654322


Q ss_pred             CCeEEEEeC
Q 029836          122 VGGVIGYDN  130 (187)
Q Consensus       122 ~gG~lv~~~  130 (187)
                      .--++++..
T Consensus        80 ~~pii~lt~   88 (133)
T d2ayxa1          80 TLPVIGVTA   88 (133)
T ss_dssp             CSCEEEEES
T ss_pred             CCCEEEEec
Confidence            223555543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=86.45  E-value=3.6  Score=28.31  Aligned_cols=77  Identities=13%  Similarity=0.094  Sum_probs=49.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH------HHHHHhhcc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP------LLDQLIQDE   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~~   91 (187)
                      +.+.+|-.|++.| ++..+++.+. .+.+|+.++.+++.++...+.+.     .+...++.|..+      .+....+. 
T Consensus         3 ~gK~alITGas~G-IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~-   75 (243)
T d1q7ba_           3 EGKIALVTGASRG-IGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE-   75 (243)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc-
Confidence            5678888886654 4555554442 25899999999988877666553     356777777543      22222222 


Q ss_pred             cCCCceeEEEEcC
Q 029836           92 KYHGTFDFVFVDA  104 (187)
Q Consensus        92 ~~~~~~D~v~~d~  104 (187)
                        .+..|+++..+
T Consensus        76 --~g~iDilVnnA   86 (243)
T d1q7ba_          76 --FGEVDILVNNA   86 (243)
T ss_dssp             --TCSCSEEEECC
T ss_pred             --cCCcceehhhh
Confidence              46899998764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.13  E-value=0.55  Score=31.46  Aligned_cols=38  Identities=18%  Similarity=0.227  Sum_probs=27.7

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHH
Q 029836           22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGL   61 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~   61 (187)
                      +|.-||.  |+.++.+|..+..+.+|+++|++++.++..+
T Consensus         2 kI~ViGl--G~vGl~~a~~~a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           2 KIAVAGS--GYVGLSLGVLLSLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEECC--SHHHHHHHHHHTTTSEEEEECSCHHHHHHHH
T ss_pred             EEEEECC--ChhHHHHHHHHHCCCcEEEEECCHHHHHHHh
Confidence            5666765  6766666655555789999999999876654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.10  E-value=2  Score=29.91  Aligned_cols=80  Identities=14%  Similarity=0.061  Sum_probs=49.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~   93 (187)
                      .+++.+|-.|++.| ++..+++.+. .+.+|+.+|.+++.++.+.+.+      .+..++.+|..+.  ...+.+.. ..
T Consensus         4 l~GK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~   76 (250)
T d1ydea1           4 YAGKVVVVTGGGRG-IGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRR   76 (250)
T ss_dssp             TTTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHh
Confidence            46789999997655 4455544442 2689999999988776555433      3577888876431  22221111 01


Q ss_pred             CCceeEEEEcC
Q 029836           94 HGTFDFVFVDA  104 (187)
Q Consensus        94 ~~~~D~v~~d~  104 (187)
                      .++.|+++..+
T Consensus        77 ~g~iDilVnnA   87 (250)
T d1ydea1          77 FGRLDCVVNNA   87 (250)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEecc
Confidence            36789998764

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.03  E-value=2.3  Score=25.70  Aligned_cols=76  Identities=12%  Similarity=0.146  Sum_probs=51.0

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcccC
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKV  122 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~  122 (187)
                      .+|..||-++...+..+..++..|.  .+. ...+..+.+..+.     ...||+|++|....  +-.++++.. +..++
T Consensus         2 ~rILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~a~~~~~-----~~~~dliilD~~mp~~~g~~~~~~~-~~~~~   72 (120)
T d1zgza1           2 HHIVIVEDEPVTQARLQSYFTQEGY--TVS-VTASGAGLREIMQ-----NQSVDLILLDINLPDENGLMLTRAL-RERST   72 (120)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHH-HTTCC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hcCCCEEeeehhhccchhHHHHHHH-hccCC
Confidence            4789999999999999999998875  343 3456666665554     46899999998632  233444443 33344


Q ss_pred             CeEEEEe
Q 029836          123 GGVIGYD  129 (187)
Q Consensus       123 gG~lv~~  129 (187)
                      --++++.
T Consensus        73 ~piI~lt   79 (120)
T d1zgza1          73 VGIILVT   79 (120)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEE
Confidence            4555554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.00  E-value=0.94  Score=29.22  Aligned_cols=41  Identities=22%  Similarity=0.165  Sum_probs=28.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHH
Q 029836           20 AKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLP   62 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~   62 (187)
                      .++||-||+  |..+..+++.+.. +.+|+.+|.+.+..+...+
T Consensus         2 ~K~IliiGa--G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~   43 (182)
T d1e5qa1           2 TKSVLMLGS--GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA   43 (182)
T ss_dssp             CCEEEEECC--STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHh
Confidence            478999987  5555555555532 4689999999987665443

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.97  E-value=0.22  Score=33.32  Aligned_cols=34  Identities=12%  Similarity=0.186  Sum_probs=27.2

Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836           95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ...|+|++.-+.......++++.+.+++.-++++
T Consensus        70 ~~ad~Ii~avps~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          70 ENAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             TTCSEEEECSCGGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             hccchhhcccchhhhHHHHHhhccccccceeccc
Confidence            3579999987778888999999999988765553

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=85.89  E-value=1  Score=32.68  Aligned_cols=81  Identities=9%  Similarity=-0.108  Sum_probs=51.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYH   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~   94 (187)
                      .++++||-.| |+|+++.++++.+ ..+.+|+++..+.......++............++.+|..+.  +...      -
T Consensus         9 ~~gk~VlVTG-~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~------~   81 (342)
T d1y1pa1           9 PEGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEV------I   81 (342)
T ss_dssp             CTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTT------T
T ss_pred             CCcCEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhh------c
Confidence            3568999998 6799999888765 235789998877776665555554444434556677776542  2222      2


Q ss_pred             CceeEEEEcCC
Q 029836           95 GTFDFVFVDAD  105 (187)
Q Consensus        95 ~~~D~v~~d~~  105 (187)
                      ...|.|+....
T Consensus        82 ~~~~~v~~~a~   92 (342)
T d1y1pa1          82 KGAAGVAHIAS   92 (342)
T ss_dssp             TTCSEEEECCC
T ss_pred             ccchhhhhhcc
Confidence            34677775543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=85.73  E-value=1.1  Score=26.14  Aligned_cols=36  Identities=28%  Similarity=0.204  Sum_probs=25.0

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCch
Q 029836           18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKE   55 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~   55 (187)
                      .+.++|+-+|-| +|.++..++...  +.+|++.|..+.
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~--g~~v~~~D~~~~   39 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMT   39 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHT--TCCCEEEESSSS
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHC--CCEEEEeeCCcC
Confidence            467889999876 555555555443  578999998554

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.36  E-value=0.38  Score=34.57  Aligned_cols=59  Identities=14%  Similarity=0.189  Sum_probs=41.7

Q ss_pred             CEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836           21 KNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      ++||-.| |+|+.+.++++.+ ..+.+|++++.......  ..+++..+..++++++.+|..+
T Consensus         1 k~vLItG-~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~--~~~l~~~~~~~~~~~~~~Dl~d   60 (321)
T d1rpna_           1 RSALVTG-ITGQDGAYLAKLLLEKGYRVHGLVARRSSDT--RWRLRELGIEGDIQYEDGDMAD   60 (321)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSSCC--CHHHHHTTCGGGEEEEECCTTC
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCccc--HHHHHHhcccCCcEEEEccccC
Confidence            5788888 6799999887766 33679999997543211  2345555555789999999765

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=85.35  E-value=5.8  Score=29.60  Aligned_cols=122  Identities=11%  Similarity=0.070  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-hHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836            3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPAL   81 (187)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~-~~~~~a~~~~~~~~~~~~i~~~~~d~~   81 (187)
                      -+|.+..+=+.++.+-.+...+-..+|...++..+...+.++.++++.+.-- .......+.+++.|.  .++++..+-.
T Consensus        57 ~nPT~~~le~~la~LEg~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi--~~~~~d~~d~  134 (394)
T d1e5ea_          57 GNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGI--QVDFINTAIP  134 (394)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTC--EEEEECTTST
T ss_pred             CCHHHHHHHHHHHHHhCCcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccce--eeeccCCCCH
Confidence            3677777888888888889999999988887766666666567887776644 445667777888776  5666655433


Q ss_pred             HHHHHHhhcccCCCceeEEEEcCC--C----cccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836           82 PLLDQLIQDEKYHGTFDFVFVDAD--K----DNYVNYHKRLIELVKVGGVIGYDNTLW  133 (187)
Q Consensus        82 ~~l~~~~~~~~~~~~~D~v~~d~~--~----~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +.+....     .+.-++|++-.+  +    .+.....+.+.+  +.|-.+++||+..
T Consensus       135 ~~~~~~i-----~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~--~~g~~vvvDnT~a  185 (394)
T d1e5ea_         135 GEVKKHM-----KPNTKIVYFETPANPTLKIIDMERVCKDAHS--QEGVLVIADNTFC  185 (394)
T ss_dssp             THHHHHC-----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHT--STTCEEEEECTTT
T ss_pred             HHHHHhh-----cccccEEEEeccCCcceeeehhhhhhhcccc--ccCeEEEecCccc
Confidence            4334332     456689998754  2    222323222221  2445567787753

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=85.28  E-value=3.5  Score=28.70  Aligned_cols=82  Identities=12%  Similarity=0.114  Sum_probs=49.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~-~~   93 (187)
                      .+.+++|-.|.+.| ++..+++.+. .+.+|+.+|.+++.++...+   +.+  .++.++++|..+  ....+.+.. ..
T Consensus         3 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~---~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (254)
T d1hdca_           3 LSGKTVIITGGARG-LGAEAARQAVAAGARVVLADVLDEEGAATAR---ELG--DAARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCCSEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TTG--GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HhC--CceEEEEcccCCHHHHHHHHHHHHHH
Confidence            46788999997665 4444444432 25899999999876654433   322  578888888643  122221111 01


Q ss_pred             CCceeEEEEcCC
Q 029836           94 HGTFDFVFVDAD  105 (187)
Q Consensus        94 ~~~~D~v~~d~~  105 (187)
                      .++.|+++..+.
T Consensus        77 ~g~iDilVnnAg   88 (254)
T d1hdca_          77 FGSVDGLVNNAG   88 (254)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCccEEEecCc
Confidence            368998887643

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.20  E-value=1.2  Score=26.98  Aligned_cols=50  Identities=24%  Similarity=0.149  Sum_probs=34.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCch--------HHHHHHHHHHHcCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKE--------HYEKGLPIIQKAGV   69 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~--------~~~~a~~~~~~~~~   69 (187)
                      ..|++++-||.  |+.++++|..+. .+.+|+.++..+.        ..+...+.+++.|.
T Consensus        20 ~~p~~v~IiGg--G~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI   78 (117)
T d1ebda2          20 EVPKSLVVIGG--GYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGV   78 (117)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             hcCCeEEEECC--CccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCC
Confidence            45789999987  666666665442 2579999997554        45666777777654

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=85.03  E-value=1.4  Score=31.78  Aligned_cols=71  Identities=17%  Similarity=0.189  Sum_probs=46.0

Q ss_pred             CEEEEEcccccHHHHHHHhhC-CCC-CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH---HHHHHhhcccCCC
Q 029836           21 KNTMEIGVFTGYSLLATALAI-PDD-GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP---LLDQLIQDEKYHG   95 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~-~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~l~~~~~~~~~~~   95 (187)
                      ++||-+| |+|+++..+++.+ ..+ .+|+++|..........       ..++++++++|..+   .....      ..
T Consensus         1 MKILITG-~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~-------~~~~~~~i~~Di~~~~~~~~~~------~~   66 (342)
T d2blla1           1 MRVLILG-VNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------NHPHFHFVEGDISIHSEWIEYH------VK   66 (342)
T ss_dssp             CEEEEET-CSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-------TCTTEEEEECCTTTCSHHHHHH------HH
T ss_pred             CEEEEEC-CCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc-------cCCCeEEEECccCChHHHHHHH------Hh
Confidence            3688888 5999998887765 223 58999998654332111       12689999998643   23323      23


Q ss_pred             ceeEEEEcCC
Q 029836           96 TFDFVFVDAD  105 (187)
Q Consensus        96 ~~D~v~~d~~  105 (187)
                      .+|.|+.-+.
T Consensus        67 ~~d~Vih~a~   76 (342)
T d2blla1          67 KCDVVLPLVA   76 (342)
T ss_dssp             HCSEEEECBC
T ss_pred             CCCccccccc
Confidence            6899887554

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.89  E-value=1.9  Score=26.38  Aligned_cols=49  Identities=18%  Similarity=0.173  Sum_probs=35.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc--------hHHHHHHHHHHHcCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITK--------EHYEKGLPIIQKAGV   69 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~--------~~~~~a~~~~~~~~~   69 (187)
                      .|++++-||.  |+.++++|..+. -+.+|+.++..+        ++.+.+++.+++.|.
T Consensus        22 ~p~~~vIiG~--G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV   79 (122)
T d1v59a2          22 IPKRLTIIGG--GIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGL   79 (122)
T ss_dssp             CCSEEEEECC--SHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECC--CchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccc
Confidence            5789999987  556666554442 257999999755        667888888888765

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.89  E-value=0.57  Score=34.19  Aligned_cols=79  Identities=18%  Similarity=0.137  Sum_probs=44.7

Q ss_pred             CEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCCce
Q 029836           21 KNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHGTF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~~   97 (187)
                      |.||-.| |+|+++.++...+ ..+.+|+++|................. ..+++++.+|..+.  +..+..    ..++
T Consensus         2 K~ILVTG-atGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~----~~~~   75 (347)
T d1z45a2           2 KIVLVTG-GAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFK----EYKI   75 (347)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHH----HSCC
T ss_pred             CEEEEeC-CCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhc-ccCCeEEEeecCCHHHHHHHHh----ccCC
Confidence            4566666 8999998877655 235789999853221111111111111 15788899987643  333221    2368


Q ss_pred             eEEEEcCC
Q 029836           98 DFVFVDAD  105 (187)
Q Consensus        98 D~v~~d~~  105 (187)
                      |.|+.-+.
T Consensus        76 d~VihlAa   83 (347)
T d1z45a2          76 DSVIHFAG   83 (347)
T ss_dssp             CEEEECCS
T ss_pred             CEEEEccc
Confidence            99986543

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.87  E-value=2.9  Score=31.70  Aligned_cols=87  Identities=9%  Similarity=0.001  Sum_probs=52.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEeC
Q 029836           20 AKNTMEIGVFTGYSLLATALAI--PDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFREG   78 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~--~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~~   78 (187)
                      ..+||-||+|.  .+.++++.+  ..-++++.+|.+.                   ...+.|++.+...+-.-++..+..
T Consensus        37 ~~kVlvvG~Gg--lG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  114 (426)
T d1yovb1          37 TCKVLVIGAGG--LGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  114 (426)
T ss_dssp             HCCEEEECSST--THHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred             cCeEEEECCCH--HHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence            45799999963  334443332  2136899999633                   235667777777655456677777


Q ss_pred             CchHHHHHHhhcccCCCceeEEEEcCCCcccHHHHH
Q 029836           79 PALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHK  114 (187)
Q Consensus        79 d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~  114 (187)
                      +..+....+      -.+||+|+...+......++.
T Consensus       115 ~i~~~~~~~------~~~~DlVi~~~Dn~~aR~~in  144 (426)
T d1yovb1         115 KIQDFNDTF------YRQFHIIVCGLDSIIARRWIN  144 (426)
T ss_dssp             CGGGBCHHH------HTTCSEEEECCSCHHHHHHHH
T ss_pred             cccchHHHH------HHhcchheeccCcHHHHHHHH
Confidence            665543443      257999997655333333443

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=84.60  E-value=2.3  Score=29.00  Aligned_cols=79  Identities=10%  Similarity=0.025  Sum_probs=43.2

Q ss_pred             CCEEEEEcccccHHHH-HHHhhCC--CCCEEE-EEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836           20 AKNTMEIGVFTGYSLL-ATALAIP--DDGKIL-ALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG   95 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~-~l~~~~~--~~~~v~-~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~   95 (187)
                      +-+|--||||  ..+. .++..+.  ++.+++ .+|.+++..+   +..++.+.+..-.....|..+.+.        +.
T Consensus        33 ~iriaiIG~G--~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~---~~~~~~~i~~~~~~~~~d~~ell~--------~~   99 (221)
T d1h6da1          33 RFGYAIVGLG--KYALNQILPGFAGCQHSRIEALVSGNAEKAK---IVAAEYGVDPRKIYDYSNFDKIAK--------DP   99 (221)
T ss_dssp             CEEEEEECCS--HHHHHTHHHHTTTCSSEEEEEEECSCHHHHH---HHHHHTTCCGGGEECSSSGGGGGG--------CT
T ss_pred             CEEEEEEcCc--HHHHHHHHHHHHhCCCceEEEEecCCHHHHH---HHHHhhccccccccccCchhhhcc--------cc
Confidence            3478889985  3332 2222221  246666 5588876654   344555554322222345555543        45


Q ss_pred             ceeEEEEcCCCcccHH
Q 029836           96 TFDFVFVDADKDNYVN  111 (187)
Q Consensus        96 ~~D~v~~d~~~~~~~~  111 (187)
                      .+|+|++..+...+.+
T Consensus       100 ~iD~V~I~tp~~~H~~  115 (221)
T d1h6da1         100 KIDAVYIILPNSLHAE  115 (221)
T ss_dssp             TCCEEEECSCGGGHHH
T ss_pred             cceeeeeccchhhhhh
Confidence            7899998766444433

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=84.17  E-value=3  Score=25.30  Aligned_cols=74  Identities=19%  Similarity=0.108  Sum_probs=47.4

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcccC
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKV  122 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~  122 (187)
                      .+|..||-++...+..+..++..|   .+. ...++.+.+..       ...||+|++|....  +=.++++.+...-+.
T Consensus         3 ~kILiVDDd~~~~~~l~~~L~~~g---~v~-~~~~~~~al~~-------~~~~dlillD~~mP~~~G~~~~~~lr~~~~~   71 (120)
T d1p2fa2           3 WKIAVVDDDKNILKKVSEKLQQLG---RVK-TFLTGEDFLND-------EEAFHVVVLDVMLPDYSGYEICRMIKETRPE   71 (120)
T ss_dssp             EEEEEECSCHHHHHHHHHHHTTTE---EEE-EESSHHHHHHC-------CSCCSEEEEESBCSSSBHHHHHHHHHHHCTT
T ss_pred             CEEEEEECCHHHHHHHHHHHHhCC---EEE-EECCHHHHHhc-------CCCCCEEEEeCcccccchhHHHHHHhhcCCC
Confidence            378899999999999999887754   233 34566655542       46799999997632  234556655543333


Q ss_pred             CeEEEEe
Q 029836          123 GGVIGYD  129 (187)
Q Consensus       123 gG~lv~~  129 (187)
                      =-++++.
T Consensus        72 ~~ii~it   78 (120)
T d1p2fa2          72 TWVILLT   78 (120)
T ss_dssp             SEEEEEE
T ss_pred             CcEEEEe
Confidence            3355543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=83.90  E-value=1.3  Score=29.08  Aligned_cols=94  Identities=12%  Similarity=0.044  Sum_probs=53.3

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836           22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV  100 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v  100 (187)
                      +|=-||.  |..+..++..+. .+.+|++.|.+++..+...+.    +............ +.+...      ....|.+
T Consensus         4 nIg~IGl--G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~----~~~~~~~~~a~~~-~~~~~~------~~~~~~i   70 (176)
T d2pgda2           4 DIALIGL--AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN----EAKGTKVLGAHSL-EEMVSK------LKKPRRI   70 (176)
T ss_dssp             SEEEECC--SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT----TTTTSSCEECSSH-HHHHHH------BCSSCEE
T ss_pred             cEEEEeE--hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHh----ccccccccchhhh-hhhhhh------hcccceE
Confidence            4445665  666666665552 247899999999887655432    2111111112223 222222      2345666


Q ss_pred             EEcCC-CcccHHHHHHHHhcccCCeEEEE
Q 029836          101 FVDAD-KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus       101 ~~d~~-~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ++... .+.....++.+...+++|.+++-
T Consensus        71 i~~~~~~~~v~~v~~~l~~~~~~g~iiid   99 (176)
T d2pgda2          71 ILLVKAGQAVDNFIEKLVPLLDIGDIIID   99 (176)
T ss_dssp             EECSCTTHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             EEecCchHHHHHHHHHHHhccccCcEEEe
Confidence            65443 45566677788888998887763

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.87  E-value=0.42  Score=32.23  Aligned_cols=69  Identities=19%  Similarity=0.122  Sum_probs=45.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCCc
Q 029836           20 AKNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHGT   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~   96 (187)
                      -++|+-+| |+|..+..+++.+ ..+.+|+++.-++..+..        ....+++++.+|..+.  +.+..      ..
T Consensus         3 ~kkIlV~G-atG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~--------~~~~~~~~~~gD~~d~~~l~~al------~~   67 (205)
T d1hdoa_           3 VKKIAIFG-ATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS--------EGPRPAHVVVGDVLQAADVDKTV------AG   67 (205)
T ss_dssp             CCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCGGGSCS--------SSCCCSEEEESCTTSHHHHHHHH------TT
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEEcChhhccc--------ccccccccccccccchhhHHHHh------cC
Confidence            46788777 6787777766533 335789999988765321        1225789999998763  23322      34


Q ss_pred             eeEEEEc
Q 029836           97 FDFVFVD  103 (187)
Q Consensus        97 ~D~v~~d  103 (187)
                      .|.|+.-
T Consensus        68 ~d~vi~~   74 (205)
T d1hdoa_          68 QDAVIVL   74 (205)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEE
Confidence            6888764

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.85  E-value=1.5  Score=26.64  Aligned_cols=75  Identities=11%  Similarity=0.071  Sum_probs=49.7

Q ss_pred             EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcccCC
Q 029836           46 KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKVG  123 (187)
Q Consensus        46 ~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~g  123 (187)
                      +|..||-++...+..++.++..|.  ++. ...+..+.+..+.     ...||+|++|....  +-.++++.+.. ..+-
T Consensus         2 nILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~eal~~l~-----~~~~dliilD~~mP~~~G~e~~~~ir~-~~~~   72 (119)
T d1zh2a1           2 NVLIVEDEQAIRRFLRTALEGDGM--RVF-EAETLQRGLLEAA-----TRKPDLIILDLGLPDGDGIEFIRDLRQ-WSAV   72 (119)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEEESEETTEEHHHHHHHHHT-TCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHH-----hcCCCEEEeccccCCCCCchHHHHHHh-ccCC
Confidence            578899999999999999998765  333 3456666666554     35799999997622  22455666543 2333


Q ss_pred             eEEEEe
Q 029836          124 GVIGYD  129 (187)
Q Consensus       124 G~lv~~  129 (187)
                      -++++.
T Consensus        73 piI~lt   78 (119)
T d1zh2a1          73 PVIVLS   78 (119)
T ss_dssp             CEEEEE
T ss_pred             cEEEEe
Confidence            455543

>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Positive regulator of the amidase operon AmiR
domain: Positive regulator of the amidase operon AmiR
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.83  E-value=3.9  Score=26.62  Aligned_cols=58  Identities=14%  Similarity=0.127  Sum_probs=41.3

Q ss_pred             HHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc
Q 029836           37 TALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD  107 (187)
Q Consensus        37 l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~  107 (187)
                      +...+. +.+|..||-++...+.....++..|+  ++... .+..+.+         ...||+|+.|....
T Consensus         5 ~~~~l~-~~~iLvvdd~~~~~~~l~~~L~~~G~--~v~~~-~~~~~al---------~~~~Dlvl~D~~mp   62 (189)
T d1qo0d_           5 LLGSLR-ELQVLVLNPPGEVSDALVLQLIRIGC--SVRQC-WPPPEAF---------DVPVDVVFTSIFQN   62 (189)
T ss_dssp             HHHTGG-GCEEEEESCTTHHHHHHHHHHHHHTC--EEEEE-CSCCSSC---------SSCCSEEEEECCSS
T ss_pred             HHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCC--cceec-CCHHHhc---------cCCCCEEEEcCCCC
Confidence            334444 57999999999999999999999886  34333 2333322         35799999998643

>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Probable two-component system transcriptional regulator Rv1626
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.76  E-value=4.2  Score=26.67  Aligned_cols=77  Identities=9%  Similarity=0.097  Sum_probs=52.5

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHhcccC
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIELVKV  122 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~~L~~  122 (187)
                      .+|..||-++......+..++..|.  ++.-...++.+.+....     ...||+|++|...  .+=.++++.+... .+
T Consensus         4 ~kILiVDD~~~~r~~l~~~L~~~g~--~vv~~a~~g~eal~~~~-----~~~pDlvllDi~mP~~dG~e~~~~ir~~-~~   75 (190)
T d1s8na_           4 RRVLIAEDEALIRMDLAEMLREEGY--EIVGEAGDGQEAVELAE-----LHKPDLVIMDVKMPRRDGIDAASEIASK-RI   75 (190)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HHCCSEEEEESSCSSSCHHHHHHHHHHT-TC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHh-----cCCCCEEEEeccccCcchHHHHHHHHhc-CC
Confidence            6899999999999999999988664  33224577777666554     4589999999763  2335666666543 33


Q ss_pred             CeEEEEe
Q 029836          123 GGVIGYD  129 (187)
Q Consensus       123 gG~lv~~  129 (187)
                      -=+++++
T Consensus        76 ~pIi~lT   82 (190)
T d1s8na_          76 APIVVLT   82 (190)
T ss_dssp             SCEEEEE
T ss_pred             CCEEEEe
Confidence            3355544

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.50  E-value=3.2  Score=28.82  Aligned_cols=82  Identities=18%  Similarity=0.157  Sum_probs=50.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~   93 (187)
                      .+.+++|-.|++.| ++..+++.+. .+.+|+.+|.+++.++.+.+.+   +  .++..+.+|..+.  +..+.+.. ..
T Consensus         3 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~--~~~~~~~~Dvt~~~~v~~~~~~~~~~   76 (256)
T d1k2wa_           3 LDGKTALITGSARG-IGRAFAEAYVREGARVAIADINLEAARATAAEI---G--PAACAIALDVTDQASIDRCVAELLDR   76 (256)
T ss_dssp             TTTEEEEEETCSSH-HHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            35778898886654 4455554442 2589999999987776555443   3  4678888876431  22221111 01


Q ss_pred             CCceeEEEEcCC
Q 029836           94 HGTFDFVFVDAD  105 (187)
Q Consensus        94 ~~~~D~v~~d~~  105 (187)
                      .+..|+++..+.
T Consensus        77 ~g~iDilVnnAg   88 (256)
T d1k2wa_          77 WGSIDILVNNAA   88 (256)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCccEEEeecc
Confidence            368999987643

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=83.03  E-value=0.71  Score=33.90  Aligned_cols=79  Identities=15%  Similarity=0.085  Sum_probs=41.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHH--HHHHHHHH-cCCCCceEEEeCCchH--HHHHHhhcccCC
Q 029836           21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYE--KGLPIIQK-AGVAHKIDFREGPALP--LLDQLIQDEKYH   94 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~--~a~~~~~~-~~~~~~i~~~~~d~~~--~l~~~~~~~~~~   94 (187)
                      +.+|-.| |+|.++.++++.+- .+.+|+++|..+....  ........ .....+++++.+|..+  .+.....    .
T Consensus         2 K~vLITG-atGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----~   76 (357)
T d1db3a_           2 KVALITG-VTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILR----E   76 (357)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHH----H
T ss_pred             CEEEEeC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHh----c
Confidence            5667777 67988888776552 2579999997543221  11111111 1122589999998754  2333321    2


Q ss_pred             CceeEEEEcC
Q 029836           95 GTFDFVFVDA  104 (187)
Q Consensus        95 ~~~D~v~~d~  104 (187)
                      ..+|.|+.-+
T Consensus        77 ~~~d~v~h~a   86 (357)
T d1db3a_          77 VQPDEVYNLG   86 (357)
T ss_dssp             HCCSEEEECC
T ss_pred             cCCCEEEEee
Confidence            3678888654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.92  E-value=3  Score=25.26  Aligned_cols=50  Identities=16%  Similarity=0.143  Sum_probs=35.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeC--------CchHHHHHHHHHHHcCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDI--------TKEHYEKGLPIIQKAGV   69 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~--------~~~~~~~a~~~~~~~~~   69 (187)
                      ..|++++-||.  |+.++++|..+. -+.+|+.++.        +++....+++.+++.|.
T Consensus        20 ~~p~~i~IiG~--G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv   78 (119)
T d3lada2          20 NVPGKLGVIGA--GVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGL   78 (119)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTE
T ss_pred             cCCCeEEEECC--ChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCc
Confidence            35789999987  777777776553 2478999985        44556777788877553

>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]

Probab=82.83  E-value=3.9  Score=25.63  Aligned_cols=86  Identities=12%  Similarity=0.089  Sum_probs=53.3

Q ss_pred             CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcc--cCCCceeEEEEcCCCc--ccHHHHHHHHhc-
Q 029836           45 GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDE--KYHGTFDFVFVDADKD--NYVNYHKRLIEL-  119 (187)
Q Consensus        45 ~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~--~~~~~~D~v~~d~~~~--~~~~~~~~~~~~-  119 (187)
                      .+|..||-++...+..++.+++.+...++. ...|..+.+..+....  .....||+|++|....  +=.++++.++.. 
T Consensus         4 k~ILiVdD~~~~~~~l~~~L~~~g~~~~v~-~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~mP~~~G~el~~~ir~~~   82 (144)
T d1i3ca_           4 KVILLVEDSKADSRLVQEVLKTSTIDHELI-ILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP   82 (144)
T ss_dssp             EEEEEECCCHHHHHHHHHHHHSCCSCEEEE-EECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCeEEE-EECCHHHHHHHHHhchhhhccCCCCEEEEECccccccchHHHHHHHhCc
Confidence            579999999999999999998877632332 3456666555543211  1134699999998633  335566666542 


Q ss_pred             -ccCCeEEEEeCc
Q 029836          120 -VKVGGVIGYDNT  131 (187)
Q Consensus       120 -L~~gG~lv~~~~  131 (187)
                       ++.=-+++++..
T Consensus        83 ~~~~iPvi~lT~~   95 (144)
T d1i3ca_          83 DLKRIPVVVLTTS   95 (144)
T ss_dssp             TTTTSCEEEEESC
T ss_pred             ccCCCeEEEEECC
Confidence             222225666543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=82.46  E-value=5.8  Score=27.38  Aligned_cols=82  Identities=15%  Similarity=0.154  Sum_probs=50.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~-~~   93 (187)
                      .+.+.+|-.|++.| ++..+++.+. .+.+|+.+|.+++.++.+.+.+   +  .+..++++|..+  ....+.+.. ..
T Consensus         4 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~   77 (253)
T d1hxha_           4 LQGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHHH
Confidence            46788888886554 4555554442 2589999999988777665544   2  467777777643  122221111 01


Q ss_pred             CCceeEEEEcCC
Q 029836           94 HGTFDFVFVDAD  105 (187)
Q Consensus        94 ~~~~D~v~~d~~  105 (187)
                      .+..|+++..+.
T Consensus        78 ~g~iDilVnnAG   89 (253)
T d1hxha_          78 LGTLNVLVNNAG   89 (253)
T ss_dssp             HCSCCEEEECCC
T ss_pred             hCCCCeEEeccc
Confidence            368899987753

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.35  E-value=2  Score=25.81  Aligned_cols=90  Identities=11%  Similarity=0.098  Sum_probs=49.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .+.++||-+|.|.  .+..-++.+ ..+++++.++.....  ..++..+.    .++++......+.   .      -..
T Consensus        10 l~~k~vlVvG~G~--va~~ka~~ll~~ga~v~v~~~~~~~--~~~~~~~~----~~i~~~~~~~~~~---d------l~~   72 (113)
T d1pjqa1          10 LRDRDCLIVGGGD--VAERKARLLLEAGARLTVNALTFIP--QFTVWANE----GMLTLVEGPFDET---L------LDS   72 (113)
T ss_dssp             CBTCEEEEECCSH--HHHHHHHHHHHTTBEEEEEESSCCH--HHHHHHTT----TSCEEEESSCCGG---G------GTT
T ss_pred             eCCCEEEEECCCH--HHHHHHHHHHHCCCeEEEEeccCCh--HHHHHHhc----CCceeeccCCCHH---H------hCC
Confidence            3578999999854  443333222 125788777765432  11222221    4677777655431   1      246


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836           97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIG  127 (187)
Q Consensus        97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      +++|++.....   ..-..+....++.|+++
T Consensus        73 ~~lv~~at~d~---~~n~~i~~~a~~~~ilV  100 (113)
T d1pjqa1          73 CWLAIAATDDD---TVNQRVSDAAESRRIFC  100 (113)
T ss_dssp             CSEEEECCSCH---HHHHHHHHHHHHTTCEE
T ss_pred             CcEEeecCCCH---HHHHHHHHHHHHcCCEE
Confidence            78998865432   23334455556667775

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=82.21  E-value=5.8  Score=27.16  Aligned_cols=79  Identities=19%  Similarity=0.130  Sum_probs=49.7

Q ss_pred             CEE-EEEcccccHHHHHHHhhCCC-CC-------EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH------HHH
Q 029836           21 KNT-MEIGVFTGYSLLATALAIPD-DG-------KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP------LLD   85 (187)
Q Consensus        21 ~~v-LeiG~g~G~~~~~l~~~~~~-~~-------~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~   85 (187)
                      |+| |-.|++.| ++..+++.+.. +.       .++.++.+++.++.+.+.++..+  .++.++.+|..+      .+.
T Consensus         1 K~VvlITGas~G-IG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~   77 (240)
T d2bd0a1           1 KHILLITGAGKG-IGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTT   77 (240)
T ss_dssp             CEEEEEETTTSH-HHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHH
T ss_pred             CCEEEEccCCCH-HHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHH
Confidence            344 55675555 45555444321 22       48999999999988888887765  477888887643      222


Q ss_pred             HHhhcccCCCceeEEEEcCC
Q 029836           86 QLIQDEKYHGTFDFVFVDAD  105 (187)
Q Consensus        86 ~~~~~~~~~~~~D~v~~d~~  105 (187)
                      ...+.   .+..|+++..+.
T Consensus        78 ~~~~~---~g~iDilvnnAg   94 (240)
T d2bd0a1          78 HIVER---YGHIDCLVNNAG   94 (240)
T ss_dssp             HHHHH---TSCCSEEEECCC
T ss_pred             HHHHH---cCCcceeecccc
Confidence            22222   578999987643

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=82.08  E-value=4.7  Score=26.03  Aligned_cols=96  Identities=14%  Similarity=0.037  Sum_probs=53.3

Q ss_pred             EEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEE
Q 029836           23 TMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVF  101 (187)
Q Consensus        23 vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~  101 (187)
                      |=-||+  |..+..+++.+- .+.+|++.|.+++..+...+........++... ..+...+....       ...+.++
T Consensus         4 IGvIGl--G~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~   73 (178)
T d1pgja2           4 VGVVGL--GVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKA-FETMEAFAASL-------KKPRKAL   73 (178)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSCHHHHHHHB-------CSSCEEE
T ss_pred             EEEEee--hHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhh-hhhhhHHHHhc-------ccceEEE
Confidence            334555  666666655542 257899999999877766554433222233332 22333343332       2333343


Q ss_pred             Ec-CCCcccHHHHHHHHhcccCCeEEEE
Q 029836          102 VD-ADKDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus       102 ~d-~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .. .........+......+++|.+++-
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~iii~  101 (178)
T d1pgja2          74 ILVQAGAATDSTIEQLKKVFEKGDILVD  101 (178)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             EeecCcchhhhhhhhhhhhccccceecc
Confidence            33 2334445666778889999988874

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.04  E-value=1.8  Score=31.21  Aligned_cols=60  Identities=18%  Similarity=0.174  Sum_probs=37.6

Q ss_pred             CEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCC------chHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836           21 KNTMEIGVFTGYSLLATALAI-PDDGKILALDIT------KEHYEKGLPIIQKAGVAHKIDFREGPALP   82 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~------~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   82 (187)
                      ++||-.| |+|+++.++.+.+ ..+..|+++|.-      ........+++..... .++.++.+|..+
T Consensus         3 kKILITG-~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d   69 (346)
T d1ek6a_           3 EKVLVTG-GAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTG-RSVEFEEMDILD   69 (346)
T ss_dssp             SEEEEET-TTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHT-CCCEEEECCTTC
T ss_pred             CeEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcC-CCcEEEEeeccc
Confidence            6888776 7899999987766 235789999831      1111112222322211 588999998765

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.99  E-value=1.6  Score=30.16  Aligned_cols=80  Identities=15%  Similarity=0.158  Sum_probs=50.2

Q ss_pred             CEEEEEcccccHHHHHHHhhC----CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc---
Q 029836           21 KNTMEIGVFTGYSLLATALAI----PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE---   91 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~----~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~---   91 (187)
                      ++||-.|+..| ++..+++.+    ..+.+|+.++.+++.++.+++..+..   .++.++..|..+.  ...+.+..   
T Consensus         3 KtilITGas~G-IG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~i~~~   78 (248)
T d1snya_           3 NSILITGCNRG-LGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNH---SNIHILEIDLRNFDAYDKLVADIEGV   78 (248)
T ss_dssp             SEEEESCCSSH-HHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHC---TTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CEEEEeCCCCH-HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcC---CcEEEEEEEeccHHHHHHHHhhhHHH
Confidence            47888886655 556665433    33579999999998887776655443   4788888876431  22221110   


Q ss_pred             cCCCceeEEEEcC
Q 029836           92 KYHGTFDFVFVDA  104 (187)
Q Consensus        92 ~~~~~~D~v~~d~  104 (187)
                      ...+..|+++..+
T Consensus        79 ~~~~~iDiLvnNA   91 (248)
T d1snya_          79 TKDQGLNVLFNNA   91 (248)
T ss_dssp             HGGGCCSEEEECC
T ss_pred             hhcCCcceEEeec
Confidence            0146789998774

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.67  E-value=6.1  Score=27.07  Aligned_cols=75  Identities=16%  Similarity=0.096  Sum_probs=47.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH------HHHHHhhcc
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP------LLDQLIQDE   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~~   91 (187)
                      +.+.+|-.|++.| ++..+++.+. .+.+|+.++.+++.++.+.+.+       +.+.+++|..+      ++....+. 
T Consensus         4 ~gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~-   74 (242)
T d1ulsa_           4 KDKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALAH-   74 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHHh-
Confidence            5788999987655 5555554442 2589999999988776655422       45667777643      22222221 


Q ss_pred             cCCCceeEEEEcC
Q 029836           92 KYHGTFDFVFVDA  104 (187)
Q Consensus        92 ~~~~~~D~v~~d~  104 (187)
                        .+..|+++..+
T Consensus        75 --~g~iDilVnnA   85 (242)
T d1ulsa_          75 --LGRLDGVVHYA   85 (242)
T ss_dssp             --HSSCCEEEECC
T ss_pred             --cCCceEEEECC
Confidence              36799888764

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.35  E-value=3.2  Score=28.35  Aligned_cols=72  Identities=15%  Similarity=0.155  Sum_probs=45.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   96 (187)
                      .+.+++|-.|++.| ++..+++.+. .+.+|+.++.+++.++       +.    ..+++..|..+....+.+.   .++
T Consensus         2 LkgK~~lVTGas~G-IG~aia~~l~~~Ga~V~~~~r~~~~l~-------~~----~~~~~~~Dv~~~~~~~~~~---~g~   66 (234)
T d1o5ia_           2 IRDKGVLVLAASRG-IGRAVADVLSQEGAEVTICARNEELLK-------RS----GHRYVVCDLRKDLDLLFEK---VKE   66 (234)
T ss_dssp             CTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHH-------HT----CSEEEECCTTTCHHHHHHH---SCC
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHH-------hc----CCcEEEcchHHHHHHHHHH---hCC
Confidence            36789999996655 4555554442 2589999999876543       22    2345667765544444333   468


Q ss_pred             eeEEEEcC
Q 029836           97 FDFVFVDA  104 (187)
Q Consensus        97 ~D~v~~d~  104 (187)
                      .|+++..+
T Consensus        67 iD~lVnnA   74 (234)
T d1o5ia_          67 VDILVLNA   74 (234)
T ss_dssp             CSEEEECC
T ss_pred             CcEEEecc
Confidence            99998764

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=81.34  E-value=1.8  Score=26.16  Aligned_cols=49  Identities=14%  Similarity=0.144  Sum_probs=34.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc--------hHHHHHHHHHHHcCC
Q 029836           19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITK--------EHYEKGLPIIQKAGV   69 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~--------~~~~~a~~~~~~~~~   69 (187)
                      -|++++-||.  |..+++++..+. .+.+|+.++..+        +..+.+.+.+++.|.
T Consensus        20 ~p~~vvIiGg--G~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV   77 (116)
T d1gesa2          20 LPERVAVVGA--GYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGP   77 (116)
T ss_dssp             CCSEEEEECC--SHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECC--ChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCC
Confidence            4789999987  666666665442 247899999754        455666777877665

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.31  E-value=1.3  Score=31.82  Aligned_cols=79  Identities=13%  Similarity=-0.040  Sum_probs=45.5

Q ss_pred             CEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCch-----HHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhccc
Q 029836           21 KNTMEIGVFTGYSLLATALAI-PDDGKILALDITKE-----HYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEK   92 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~-----~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~   92 (187)
                      +.+|-.| |+|.++.++...+ ..+.+|+++|....     .++.......... ..++++..+|..+.  +....+   
T Consensus         2 k~~LVTG-atGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Di~~~~~~~~~~~---   76 (339)
T d1n7ha_           2 KIALITG-ITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVN-KALMKLHYADLTDASSLRRWID---   76 (339)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHHHHHHHH---
T ss_pred             CEEEEeC-CccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhcc-ccceEEEEccccCHHHHHHHHh---
Confidence            4567676 8999999987766 34689999996432     2221111111111 15688999987653  222211   


Q ss_pred             CCCceeEEEEcCC
Q 029836           93 YHGTFDFVFVDAD  105 (187)
Q Consensus        93 ~~~~~D~v~~d~~  105 (187)
                       ...+|.|+.-+.
T Consensus        77 -~~~~D~Vih~Aa   88 (339)
T d1n7ha_          77 -VIKPDEVYNLAA   88 (339)
T ss_dssp             -HHCCSEEEECCS
T ss_pred             -hhccchhhhccc
Confidence             246898886554

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.17  E-value=4  Score=26.91  Aligned_cols=86  Identities=17%  Similarity=0.076  Sum_probs=48.8

Q ss_pred             CCCEEEEEcccccHH-HHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836           19 NAKNTMEIGVFTGYS-LLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~-~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~   97 (187)
                      ..+++.-+|.|.... ...+++.+  +.+|++.|..........     .    .+++  .+..+.++          .-
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~f--g~~v~~~d~~~~~~~~~~-----~----~~~~--~~l~ell~----------~s   99 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAF--GAYVVAYDPYVSPARAAQ-----L----GIEL--LSLDDLLA----------RA   99 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCHHHHHH-----H----TCEE--CCHHHHHH----------HC
T ss_pred             cceeeeeccccchhHHHHHHhhhc--cceEEeecCCCChhHHhh-----c----Ccee--ccHHHHHh----------hC
Confidence            356888888765442 33344554  579999998754332211     1    1222  34444444          35


Q ss_pred             eEEEEcCC-CcccHHHH-HHHHhcccCCeEEE
Q 029836           98 DFVFVDAD-KDNYVNYH-KRLIELVKVGGVIG  127 (187)
Q Consensus        98 D~v~~d~~-~~~~~~~~-~~~~~~L~~gG~lv  127 (187)
                      |+|++..+ .+....++ +...+.||+|.+||
T Consensus       100 Div~~~~Plt~~T~~lin~~~l~~mk~~a~lI  131 (184)
T d1ygya1         100 DFISVHLPKTPETAGLIDKEALAKTKPGVIIV  131 (184)
T ss_dssp             SEEEECCCCSTTTTTCBCHHHHTTSCTTEEEE
T ss_pred             CEEEEcCCCCchhhhhhhHHHHhhhCCCceEE
Confidence            89988765 22222222 35567889998887

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.96  E-value=2.3  Score=29.80  Aligned_cols=85  Identities=15%  Similarity=0.264  Sum_probs=52.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KY   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~   93 (187)
                      .+++++|-.|+..|. +..+++.+. .+.+|+.++.+++.++.+.+.+..... .+..+...|..+.  .....+.. ..
T Consensus        12 L~GK~alITGassGI-G~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~   89 (269)
T d1xu9a_          12 LQGKKVIVTGASKGI-GREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKL   89 (269)
T ss_dssp             GTTCEEEESSCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHHHHHHHH
Confidence            577899999977664 455544442 268999999999999887766655433 4666666665421  11111100 01


Q ss_pred             CCceeEEEEcC
Q 029836           94 HGTFDFVFVDA  104 (187)
Q Consensus        94 ~~~~D~v~~d~  104 (187)
                      .+..|+++..+
T Consensus        90 ~g~~~~li~na  100 (269)
T d1xu9a_          90 MGGLDMLILNH  100 (269)
T ss_dssp             HTSCSEEEECC
T ss_pred             hCCcccccccc
Confidence            35778887654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=80.64  E-value=1.3  Score=27.21  Aligned_cols=51  Identities=18%  Similarity=0.190  Sum_probs=37.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc--------hHHHHHHHHHHHcCCC
Q 029836           18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITK--------EHYEKGLPIIQKAGVA   70 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~--------~~~~~a~~~~~~~~~~   70 (187)
                      ..|++++-||+  |+.++++|..+. -+.+|+.++.++        +..+...+.+++.|..
T Consensus        23 ~~p~~~viiG~--G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~   82 (123)
T d1dxla2          23 EIPKKLVVIGA--GYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMK   82 (123)
T ss_dssp             SCCSEEEESCC--SHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCC
T ss_pred             ccCCeEEEEcc--chHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccce
Confidence            35789999987  778888776553 247899998644        5566777888887653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=80.14  E-value=4.5  Score=24.57  Aligned_cols=64  Identities=19%  Similarity=0.208  Sum_probs=38.1

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCch---------HHHHHHHHHHHcCCCCceEEEeCCc
Q 029836           11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKE---------HYEKGLPIIQKAGVAHKIDFREGPA   80 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~---------~~~~a~~~~~~~~~~~~i~~~~~d~   80 (187)
                      +...+...++++|+-||.  |..++++|..+. .+.+|+.+|..+.         ..+..++.+++.    .++++.+..
T Consensus        21 i~~~~~~~~~k~vvViGg--G~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~----gv~~~~~~~   94 (123)
T d1nhpa2          21 LKQKTVDPEVNNVVVIGS--GYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEAN----NITIATGET   94 (123)
T ss_dssp             HHHHHTCTTCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTT----TEEEEESCC
T ss_pred             HHHHhhccCCCEEEEECC--hHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcC----CeEEEeCce
Confidence            334444456789999976  566666665442 2578999987553         334445555553    455555543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.13  E-value=1.9  Score=28.75  Aligned_cols=96  Identities=18%  Similarity=0.062  Sum_probs=54.6

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc-------CCCC--------------ceEEEeCC
Q 029836           21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA-------GVAH--------------KIDFREGP   79 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~-------~~~~--------------~i~~~~~d   79 (187)
                      ++|--||+|.=+.++.++-... +..|+.+|.+++.++.+++.+++.       +...              ++.+. .|
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~-G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~d   82 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAAT-GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TD   82 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SC
T ss_pred             EEEEEECcCHHHHHHHHHHHhC-CCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-ch
Confidence            6888999864222222111112 689999999999988888776632       1110              11111 11


Q ss_pred             chHHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEE
Q 029836           80 ALPLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGY  128 (187)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..   ..       -...|+|+=...  .+--.+.|.++.+.++++.+|.-
T Consensus        83 ~~---~a-------~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilas  123 (192)
T d1f0ya2          83 AA---SV-------VHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS  123 (192)
T ss_dssp             HH---HH-------TTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEE
T ss_pred             hH---hh-------hcccceehhhcccchhHHHHHHHHHhhhcccCceeec
Confidence            11   11       234578774332  12245688888888888877754