Citrus Sinensis ID: 029844

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MAPVGPRSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDDE
Secondary Structure (PSIPRED)
ccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccEEEcccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHEEEEEEEEEEEEcccccccEEEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccEccccccccEEEEEEccccHHHHEccccccccccHHHHHHHHHHHHHHHHEEEEEEEEEHHHcccccccEEEEEEEEEHHHcccccccc
Coil and Loop (DISEMBL)
mapvgprsgdAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLaksnvtrcvdFRETAEVIAKVGFKMFLGVTAtvsnwdadgtccsiilednplvdfvelpdtcqglyycNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQvpeeypykdde
Flexible Loop (DISEMBL)
mapvgprsgdAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKllkqvpeeypykdde
Low Complexity Region (SEG)
MAPVGPRSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDDE
Disordered region (IsUnstruct)
**********AIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQV**********
Disordered Region (DISOPRED)
******R****IFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPE********
Disordered Region (DISEMBL)
********GDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDDE
Disordered Region (DISPRO)
*APVGPRSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPVGPRSGDAIFANVERVNAELFTLTYGATxxxxxxxxxxxxxxxxxxxxxGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
Q5ZI57	180	Trafficking protein parti	yes	no	0.887	0.916	0.575	1e-53
Q86K94	186	Trafficking protein parti	yes	no	0.973	0.973	0.565	1e-52
Q5U1Z2	180	Trafficking protein parti	yes	no	0.887	0.916	0.569	1e-52
O55013	180	Trafficking protein parti	yes	no	0.887	0.916	0.569	1e-52
O43617	180	Trafficking protein parti	yes	no	0.887	0.916	0.563	3e-52
Q9P6P5	183	Transport protein particl	yes	no	0.956	0.972	0.522	2e-47
P36149	193	Trafficking protein parti	yes	no	0.951	0.917	0.466	1e-41
Q4KL14	181	Trafficking protein parti	no	no	0.876	0.900	0.487	3e-40
Q5T215	181	Trafficking protein parti	no	no	0.876	0.900	0.487	2e-39
Q61IU9	181	Probable trafficking prot	N/A	no	0.741	0.762	0.460	2e-29

>sp|Q5ZI57|TPPC3_CHICK Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 SV=1

 Score =  208 bits (530), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 95/165 (57%), Positives = 129/165 (78%)

Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++N+ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct: 12  KKMNSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAK+ FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131

Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
            GV+RGALEMV M  +V +++D L+GD   E+++K ++++ +  P
Sbjct: 132 CGVLRGALEMVQMAVDVKFVQDTLKGDSVTEIRMKFIRRIEDNLP 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Gallus gallus (taxid: 9031)

>sp|Q86K94|TPPC3_DICDI Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum GN=trappc3 PE=3 SV=2

 Score =  205 bits (522), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/182 (56%), Positives = 134/182 (73%), Gaps = 1/182 (0%)

Query: 1   MAPVGPRSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           M+    + G+ +F  VE++N+ELFTLTYGA V QL+ D E++E+VN +L+QMGYNIGIRL
Sbjct: 1   MSKKYDKLGNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRL 60

Query: 61  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 120
           I+EFLAKS + RC DF ETAEVIAKVGFKMFLGV A V +WDA+     + +EDNPL+DF
Sbjct: 61  IEEFLAKSGIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDF 120

Query: 121 VELPDTCQG-LYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 179
           VELPD  +  LYY NIL GV+RGALEMV MK + T+++  L  D   E++V L + + + 
Sbjct: 121 VELPDQYKHKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDM 180

Query: 180 YP 181
            P
Sbjct: 181 IP 182

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5U1Z2|TPPC3_RAT Trafficking protein particle complex subunit 3 OS=Rattus norvegicus GN=Trappc3 PE=2 SV=1

 Score =  205 bits (522), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 128/165 (77%)

Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131

Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Rattus norvegicus (taxid: 10116)

>sp|O55013|TPPC3_MOUSE Trafficking protein particle complex subunit 3 OS=Mus musculus GN=Trappc3 PE=1 SV=1

 Score =  205 bits (522), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 128/165 (77%)

Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131

Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|O43617|TPPC3_HUMAN Trafficking protein particle complex subunit 3 OS=Homo sapiens GN=TRAPPC3 PE=1 SV=1

 Score =  204 bits (519), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 93/165 (56%), Positives = 128/165 (77%)

Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131

Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|Q9P6P5|BET3_SCHPO Transport protein particle subunit bet3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bet3 PE=3 SV=1

 Score =  188 bits (477), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 129/180 (71%), Gaps = 2/180 (1%)

Query: 7   RSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLA 66
           + G+ ++  V++VNAELF LTYG+ V QL  D+   E+VN++LD+MGYNIGIRLI++FLA
Sbjct: 5   KIGEDVYKKVDKVNAELFVLTYGSIVAQLCKDMN-YEKVNEELDKMGYNIGIRLIEDFLA 63

Query: 67  KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-D 125
           K+   RC DFRET E +AKVGFK+FL  +  +S+   DG    + L+DNPL +FVELP D
Sbjct: 64  KTEWPRCADFRETGETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPAD 123

Query: 126 TCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 185
             Q L+Y NIL GVIRGALEM+ M  +  ++RD+LRGD+  E++V L + + EE P  D+
Sbjct: 124 ARQKLWYSNILCGVIRGALEMLQMDVDAVFLRDILRGDEHTEIRVHLKRILKEEIPPGDE 183

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P36149|BET3_YEAST Trafficking protein particle complex subunit BET3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET3 PE=1 SV=1

 Score =  169 bits (428), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 125/180 (69%), Gaps = 3/180 (1%)

Query: 9   GDAIFAN-VERVNAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLA 66
           G+ I+ N  E++N ELFTLTYG+ V QL  D E +  +VN  L  MGYNIG RLI++FLA
Sbjct: 14  GEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLA 73

Query: 67  KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-D 125
           ++ + RC +  +T+EV++K  FK+FL +T  ++NW  +    S+IL++NPL DFVELP D
Sbjct: 74  RTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMD 133

Query: 126 TCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 185
             + L+Y NIL GV++G+LEMV +  +V ++ D+LRGD   E++VKL + + +E P  +D
Sbjct: 134 AMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193

Component of the TRAPP I, TRAPP II and TRAPP III complexes which act as guanine nucleotide exchange factors (GEF) for YPT1. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II plays a role in intra-Golgi transport. TRAPP III plays a role in autophagosome formation. Required for sporulation. Has a role late in meiosis following DNA replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q4KL14|TPC3L_MOUSE Trafficking protein particle complex subunit 3-like protein OS=Mus musculus GN=Bet3l PE=2 SV=1

 Score =  164 bits (416), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 113/164 (68%), Gaps = 1/164 (0%)

Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
            ++N +LF LTYGA V QL  D E+ E+VNK LD+MGYNIG RL+++FLA+S V RC  +
Sbjct: 12  HKINKDLFVLTYGALVAQLCKDYEKDEDVNKYLDKMGYNIGTRLVEDFLARSCVRRCHSY 71

Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFV-ELPDTCQGLYYCNI 135
            E   +IA+V FKM+LG+T +V+  ++     S+IL  NPL +FV ELP     L YCN+
Sbjct: 72  SEIINIIAQVAFKMYLGITPSVTCHNSSRNEFSLILHKNPLAEFVEELPAGRSALCYCNL 131

Query: 136 LSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 179
           L G+IRGALEMV +   VT+++D L+GD   E+ +  LK++ E+
Sbjct: 132 LCGIIRGALEMVHLAANVTFLQDRLKGDSVTEIGITFLKKLDEK 175

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|Q5T215|TPC3L_HUMAN Trafficking protein particle complex subunit 3-like protein OS=Homo sapiens GN=BET3L PE=1 SV=1

 Score =  161 bits (408), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 115/164 (70%), Gaps = 1/164 (0%)

Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
            ++N +LF LTYGA V QL  D E+ E+VN+ LD+MGY IG RL+++FLA+S V RC  +
Sbjct: 12  HKINKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFLARSCVGRCHSY 71

Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFV-ELPDTCQGLYYCNI 135
            E  ++IA+V FKM+LG+T +V+  ++     S+ILE NPLV+FV ELP     L YCN+
Sbjct: 72  SEIIDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCYCNL 131

Query: 136 LSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 179
           L G+IRGALEMV +  +VT+++D L+GD   E+ +  LK+  E+
Sbjct: 132 LCGIIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLKKRDEK 175

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|Q61IU9|TPPC3_CAEBR Probable trafficking protein particle complex subunit 3 OS=Caenorhabditis briggsae GN=CBG10062 PE=3 SV=1

 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/141 (46%), Positives = 94/141 (66%), Gaps = 3/141 (2%)

Query: 13  FANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVT 71
            A+ ++++AELF LTYGA V ++L D E+ ++V  QLD+MG+N+G RL D+FLAK +NV 
Sbjct: 9   LADSKKMSAELFCLTYGAMVTEMLKDYEDPKDVTVQLDKMGFNMGTRLADDFLAKNANVP 68

Query: 72  RCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDT--CQG 129
           RCVD R+ A+V+ +     +LGV+AT S+W +      I LE NPL + V++P      G
Sbjct: 69  RCVDTRQIADVLCRNAIPCYLGVSATASSWSSGDREFIITLESNPLTELVQVPPNLVSAG 128

Query: 130 LYYCNILSGVIRGALEMVSMK 150
           L Y  +++G IRGALE V  K
Sbjct: 129 LSYSQMIAGAIRGALEAVHFK 149

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
255563689	186	Trafficking protein particle complex sub	1.0	1.0	0.951	1e-100
225461038	186	PREDICTED: trafficking protein particle	1.0	1.0	0.930	8e-99
312283369	186	unnamed protein product [Thellungiella h	1.0	1.0	0.930	4e-98
388507128	186	unknown [Lotus japonicus]	1.0	1.0	0.919	4e-98
224126327	186	predicted protein [Populus trichocarpa]	1.0	1.0	0.913	1e-97
297792935	186	hypothetical protein ARALYDRAFT_357730 [	1.0	1.0	0.924	1e-97
15239731	186	Transport protein particle (TRAPP) compo	1.0	1.0	0.913	4e-97
351723957	186	uncharacterized protein LOC100499843 [Gl	1.0	1.0	0.903	3e-95
351725447	186	uncharacterized protein LOC100306217 [Gl	1.0	1.0	0.903	4e-95
357474795	186	Trafficking protein particle complex sub	1.0	1.0	0.897	1e-94

>gi|255563689|ref|XP_002522846.1| Trafficking protein particle complex subunit, putative [Ricinus communis] gi|223537930|gb|EEF39544.1| Trafficking protein particle complex subunit, putative [Ricinus communis]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/186 (95%), Positives = 183/186 (98%)

Query: 1   MAPVGPRSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MAPVGPRSGDAIFA+VERVNAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPVGPRSGDAIFASVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 120
           +DEFLAKSNV RCVDFRETAEVIAKVGFKMFLGV+A+V+NWDADGTCCSIILEDNPLVDF
Sbjct: 61  VDEFLAKSNVNRCVDFRETAEVIAKVGFKMFLGVSASVTNWDADGTCCSIILEDNPLVDF 120

Query: 121 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 180
           VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTW RD+LRGDDAYELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWARDMLRGDDAYELQVKLLKQVPEEY 180

Query: 181 PYKDDE 186
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461038|ref|XP_002281399.1| PREDICTED: trafficking protein particle complex subunit 3 [Vitis vinifera] gi|147765421|emb|CAN64900.1| hypothetical protein VITISV_041653 [Vitis vinifera] gi|297735985|emb|CBI23959.3| unnamed protein product [Vitis vinifera]

 Score =  364 bits (935), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 173/186 (93%), Positives = 181/186 (97%)

Query: 1   MAPVGPRSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MAP  PRSGDAIFANVERVNAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPAAPRSGDAIFANVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 120
           IDEFLAKSNV+RCVDF+ETAE IAKVGFKMFLGVTA+V+NWDADGT CS++LEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCVDFKETAEAIAKVGFKMFLGVTASVTNWDADGTSCSLVLEDNPLVDF 120

Query: 121 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 180
           VELPDTCQGLYYCNILSGV+RGALEMVSMKTEVTWIRD+LRGDDAYELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLYYCNILSGVVRGALEMVSMKTEVTWIRDMLRGDDAYELQVKLLKQVPEEY 180

Query: 181 PYKDDE 186
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283369|dbj|BAJ34550.1| unnamed protein product [Thellungiella halophila]

 Score =  362 bits (929), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 173/186 (93%), Positives = 182/186 (97%)

Query: 1   MAPVGPRSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MAPVGPRSGDAIF++++RVNAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 120
           IDEFLAKS V+RCVDFRETAE+IAKVGFKMFLGVTA+VS+WDADGTCCSIILEDNPLVDF
Sbjct: 61  IDEFLAKSGVSRCVDFRETAEMIAKVGFKMFLGVTASVSSWDADGTCCSIILEDNPLVDF 120

Query: 121 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 180
           VELPDTCQGLYYCN+LSGVIRGALEMVSMKTEVTW RDVLRGDDAYELQVKLLKQV EEY
Sbjct: 121 VELPDTCQGLYYCNVLSGVIRGALEMVSMKTEVTWTRDVLRGDDAYELQVKLLKQVAEEY 180

Query: 181 PYKDDE 186
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507128|gb|AFK41630.1| unknown [Lotus japonicus]

 Score =  362 bits (929), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 171/186 (91%), Positives = 182/186 (97%)

Query: 1   MAPVGPRSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MAPV PRSGDAIFAN+ERVNAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPVAPRSGDAIFANIERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 120
           +DEFLAKSNV+RCVDFRET +VIAKVGFKMFLGVTA+V+NWDA+GTCCSI+LEDNPLVDF
Sbjct: 61  VDEFLAKSNVSRCVDFRETTDVIAKVGFKMFLGVTASVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 180
           VELPDTCQGLYYCNILSGVIRGAL+MVSMKTEVTW+RDVLRGDD +ELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLYYCNILSGVIRGALDMVSMKTEVTWLRDVLRGDDVFELQVKLLKQVPEEY 180

Query: 181 PYKDDE 186
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126327|ref|XP_002319811.1| predicted protein [Populus trichocarpa] gi|118484767|gb|ABK94252.1| unknown [Populus trichocarpa] gi|222858187|gb|EEE95734.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 170/186 (91%), Positives = 182/186 (97%)

Query: 1   MAPVGPRSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MAPV PRSGDAIFA+VE VNAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIG+RL
Sbjct: 1   MAPVAPRSGDAIFASVEHVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGVRL 60

Query: 61  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 120
           IDEFLAKSNV+RCVDF+ETA+VIAKVGFKMFLGV A+V+NWDADGTCCSI+LEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCVDFKETADVIAKVGFKMFLGVGASVTNWDADGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 180
           VELPDTCQGLYYCNILSGV+RGALEMVSMKTEVTW+RD+LRGDDA+ELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLYYCNILSGVVRGALEMVSMKTEVTWVRDMLRGDDAFELQVKLLKQVPEEY 180

Query: 181 PYKDDE 186
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792935|ref|XP_002864352.1| hypothetical protein ARALYDRAFT_357730 [Arabidopsis lyrata subsp. lyrata] gi|297310187|gb|EFH40611.1| hypothetical protein ARALYDRAFT_357730 [Arabidopsis lyrata subsp. lyrata]

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 172/186 (92%), Positives = 182/186 (97%)

Query: 1   MAPVGPRSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MAPVGPRSGDAIF++++RVNAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 120
           IDEFLAKS V+RCVDF+ETAE+IAKVGFKMFLGVTA+V++WDADGTCCSIILEDNPLVDF
Sbjct: 61  IDEFLAKSGVSRCVDFKETAEMIAKVGFKMFLGVTASVTSWDADGTCCSIILEDNPLVDF 120

Query: 121 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 180
           VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTW RDVLRGDDAYELQVKLLKQV EEY
Sbjct: 121 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWTRDVLRGDDAYELQVKLLKQVAEEY 180

Query: 181 PYKDDE 186
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239731|ref|NP_200286.1| Transport protein particle (TRAPP) component [Arabidopsis thaliana] gi|9758255|dbj|BAB08754.1| transport protein particle component Bet3p-like protein [Arabidopsis thaliana] gi|21537181|gb|AAM61522.1| transport protein particle component Bet3p-like protein [Arabidopsis thaliana] gi|22022528|gb|AAM83222.1| AT5g54750/MBG8_1 [Arabidopsis thaliana] gi|23308241|gb|AAN18090.1| At5g54750/MBG8_1 [Arabidopsis thaliana] gi|332009151|gb|AED96534.1| Transport protein particle (TRAPP) component [Arabidopsis thaliana]

 Score =  358 bits (920), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 170/186 (91%), Positives = 182/186 (97%)

Query: 1   MAPVGPRSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MAPVGPRSGDAIF++++RVNAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 120
           IDEFLAKS V+RCVDF+ETAE+IAKVGFKMFLGVTA+V++WD+DGTCCSIILEDNPLVDF
Sbjct: 61  IDEFLAKSGVSRCVDFKETAEMIAKVGFKMFLGVTASVTSWDSDGTCCSIILEDNPLVDF 120

Query: 121 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 180
           VELPDTCQGLYYCN+LSGVIRGALEMVSMKTEVTW RDVLRGDDAYELQVKLLKQV EEY
Sbjct: 121 VELPDTCQGLYYCNVLSGVIRGALEMVSMKTEVTWTRDVLRGDDAYELQVKLLKQVAEEY 180

Query: 181 PYKDDE 186
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723957|ref|NP_001236785.1| uncharacterized protein LOC100499843 [Glycine max] gi|255627065|gb|ACU13877.1| unknown [Glycine max]

 Score =  352 bits (904), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 168/186 (90%), Positives = 177/186 (95%)

Query: 1   MAPVGPRSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           M PV PRSGDAIFANVERVNAELFTLTYGA VRQLLTDLEEVEEVN+QLDQMGYNIGIRL
Sbjct: 1   MPPVAPRSGDAIFANVERVNAELFTLTYGAIVRQLLTDLEEVEEVNEQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 120
           IDEFLAKSNV+RC DFRET +VIAKVGFKMFLGV A+V+NWDADGTCCSI+LEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCNDFRETTDVIAKVGFKMFLGVIASVTNWDADGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 180
           VELPD CQGLYYCNILSGVIRGAL+MVSMKTEVTW+RDVLRGDD +ELQVKLLK VPEEY
Sbjct: 121 VELPDNCQGLYYCNILSGVIRGALDMVSMKTEVTWLRDVLRGDDVFELQVKLLKHVPEEY 180

Query: 181 PYKDDE 186
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725447|ref|NP_001235557.1| uncharacterized protein LOC100306217 [Glycine max] gi|255627887|gb|ACU14288.1| unknown [Glycine max]

 Score =  352 bits (903), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 168/186 (90%), Positives = 176/186 (94%)

Query: 1   MAPVGPRSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           M PV PRSGDAIFANVERVNAELFTLTYGA VRQLLTDLEE E VNKQLDQMGYNIGIRL
Sbjct: 1   MPPVAPRSGDAIFANVERVNAELFTLTYGAIVRQLLTDLEEAEVVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 120
           IDEFLAKSNV+RC DFRET +VIAKVGFKMFLGVTA+V+NWDADGTCCSI+LEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCNDFRETTDVIAKVGFKMFLGVTASVTNWDADGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 180
           VELPD CQGLYYCNILSGVIRGAL+MVSMKTEVTW+RDVLRGDD +ELQVKLLK VPEEY
Sbjct: 121 VELPDNCQGLYYCNILSGVIRGALDMVSMKTEVTWLRDVLRGDDVFELQVKLLKHVPEEY 180

Query: 181 PYKDDE 186
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474795|ref|XP_003607683.1| Trafficking protein particle complex subunit [Medicago truncatula] gi|217075312|gb|ACJ86016.1| unknown [Medicago truncatula] gi|355508738|gb|AES89880.1| Trafficking protein particle complex subunit [Medicago truncatula] gi|388499948|gb|AFK38040.1| unknown [Medicago truncatula]

 Score =  350 bits (898), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 167/186 (89%), Positives = 178/186 (95%)

Query: 1   MAPVGPRSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MAPV PR+GDAIFAN+ERVNAELFTLTYGA VRQLLTDLEEV+EVNKQLDQMGYNIGIRL
Sbjct: 1   MAPVAPRTGDAIFANIERVNAELFTLTYGAIVRQLLTDLEEVDEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 120
           IDEFLAKSNV+RCVDFRETA+VIAKVGFKMFLGVTA+V+NWDA+GT CSIILEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCVDFRETADVIAKVGFKMFLGVTASVTNWDAEGTTCSIILEDNPLVDF 120

Query: 121 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 180
           VELPD  QGLYYCNILSGVIRGAL+MVSMK EVTW+RD LRGDD +ELQVKLLKQVPEEY
Sbjct: 121 VELPDNYQGLYYCNILSGVIRGALDMVSMKAEVTWLRDALRGDDVFELQVKLLKQVPEEY 180

Query: 181 PYKDDE 186
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
UNIPROTKB|Q5ZI57	180	TRAPPC3 "Trafficking protein p	0.887	0.916	0.575	9.5e-50
DICTYBASE|DDB_G0277135	186	trappc3 "trafficking protein p	0.930	0.930	0.586	8.5e-49
UNIPROTKB|E2QWX5	180	TRAPPC3 "Uncharacterized prote	0.887	0.916	0.569	1.1e-48
MGI|MGI:1351486	180	Trappc3 "trafficking protein p	0.887	0.916	0.569	1.1e-48
RGD|1309135	180	Trappc3 "trafficking protein p	0.887	0.916	0.569	1.1e-48
UNIPROTKB|O43617	180	TRAPPC3 "Trafficking protein p	0.887	0.916	0.563	2.9e-48
GENEDB_PFALCIPARUM|PFD0895c	187	PFD0895c "Bet3 transport prote	0.962	0.957	0.544	3.7e-48
UNIPROTKB|Q8I1Q2	187	PFD0895c "Bet3 transport prote	0.962	0.957	0.544	3.7e-48
ASPGD|ASPL0000037253	188	AN9086 [Emericella nidulans (t	0.913	0.904	0.540	5.4e-47
POMBASE|SPAC644.18c	183	bet3 "TRAPP complex subunit Be	0.946	0.961	0.528	4.4e-45

UNIPROTKB|Q5ZI57 TRAPPC3 "Trafficking protein particle complex subunit 3" [Gallus gallus (taxid:9031)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 95/165 (57%), Positives = 129/165 (78%)

Query:    17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
             +++N+ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct:    12 KKMNSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDF 71

Query:    77 RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
             RETA+VIAK+ FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct:    72 RETADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131

Query:   137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
              GV+RGALEMV M  +V +++D L+GD   E+++K ++++ +  P
Sbjct:   132 CGVLRGALEMVQMAVDVKFVQDTLKGDSVTEIRMKFIRRIEDNLP 176

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

DICTYBASE|DDB_G0277135 trappc3 "trafficking protein particle complex subunit 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 102/174 (58%), Positives = 131/174 (75%)

Query:     9 GDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKS 68
             G+ +F  VE++N+ELFTLTYGA V QL+ D E++E+VN +L+QMGYNIGIRLI+EFLAKS
Sbjct:     9 GNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEFLAKS 68

Query:    69 NVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQ 128
              + RC DF ETAEVIAKVGFKMFLGV A V +WDA+     + +EDNPL+DFVELPD  +
Sbjct:    69 GIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDFVELPDQYK 128

Query:   129 G-LYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
               LYY NIL GV+RGALEMV MK + T+++  L  D   E++V L + + +  P
Sbjct:   129 HKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDMIP 182

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|E2QWX5 TRAPPC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 94/165 (56%), Positives = 128/165 (77%)

Query:    17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
             +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct:    12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDF 71

Query:    77 RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
             RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct:    72 RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131

Query:   137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
              GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   132 CGVLRGALEMVQMAVEARFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

GO:0030008 "TRAPP complex" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

MGI|MGI:1351486 Trappc3 "trafficking protein particle complex 3" [Mus musculus (taxid:10090)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 94/165 (56%), Positives = 128/165 (77%)

Query:    17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
             +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct:    12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71

Query:    77 RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
             RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct:    72 RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131

Query:   137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
              GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IDA

RGD|1309135 Trappc3 "trafficking protein particle complex 3" [Rattus norvegicus (taxid:10116)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 94/165 (56%), Positives = 128/165 (77%)

Query:    17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
             +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct:    12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71

Query:    77 RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
             RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct:    72 RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131

Query:   137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
              GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

GO:0000139 "Golgi membrane" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA;ISO

GO:0030008 "TRAPP complex" evidence=IEA;ISO

UNIPROTKB|O43617 TRAPPC3 "Trafficking protein particle complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 93/165 (56%), Positives = 128/165 (77%)

Query:    17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
             +++++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DF
Sbjct:    12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDF 71

Query:    77 RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
             RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct:    72 RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131

Query:   137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
              GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GENEDB_PFALCIPARUM|PFD0895c PFD0895c "Bet3 transport protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 98/180 (54%), Positives = 135/180 (75%)

Query:     7 RSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLA 66
             + GDAIFA +E+VN+ELF+ TYGA V QLL DLE V+EVN+QL++MG+NIG RLI+EFLA
Sbjct:     8 KQGDAIFAKLEKVNSELFSFTYGALVSQLLKDLELVDEVNEQLEKMGFNIGTRLIEEFLA 67

Query:    67 KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDT 126
             KS+++ C DF ET  VIAKV FKMFLG++ TV+  + +    SII ++NPL DFVELP +
Sbjct:    68 KSDISFCEDFEETVNVIAKVAFKMFLGISGTVTCVNKESNIFSIIFDNNPLSDFVELPKS 127

Query:   127 CQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDDE 186
                L YC++L GVI+GALE + +K    +++D+L+GDD YEL ++L + + EE    D+E
Sbjct:   128 LSSLNYCSLLCGVIKGALEQIRIKVNCYFVKDMLKGDDYYELYIQLNEVMKEEI-LNDEE 186

GO:0005215 "transporter activity" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

UNIPROTKB|Q8I1Q2 PFD0895c "Bet3 transport protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 98/180 (54%), Positives = 135/180 (75%)

Query:     7 RSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLA 66
             + GDAIFA +E+VN+ELF+ TYGA V QLL DLE V+EVN+QL++MG+NIG RLI+EFLA
Sbjct:     8 KQGDAIFAKLEKVNSELFSFTYGALVSQLLKDLELVDEVNEQLEKMGFNIGTRLIEEFLA 67

Query:    67 KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDT 126
             KS+++ C DF ET  VIAKV FKMFLG++ TV+  + +    SII ++NPL DFVELP +
Sbjct:    68 KSDISFCEDFEETVNVIAKVAFKMFLGISGTVTCVNKESNIFSIIFDNNPLSDFVELPKS 127

Query:   127 CQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDDE 186
                L YC++L GVI+GALE + +K    +++D+L+GDD YEL ++L + + EE    D+E
Sbjct:   128 LSSLNYCSLLCGVIKGALEQIRIKVNCYFVKDMLKGDDYYELYIQLNEVMKEEI-LNDEE 186

GO:0005215 "transporter activity" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

ASPGD|ASPL0000037253 AN9086 [Emericella nidulans (taxid:162425)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 94/174 (54%), Positives = 130/174 (74%)

Query:    16 VERVNAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCV 74
             +++VNAEL TLTYG  V QL  D +    EVNKQL++MGYNIG+RLI++FLAKSN  RC 
Sbjct:    15 IDKVNAELVTLTYGTIVAQLCQDYDGNYPEVNKQLEKMGYNIGMRLIEDFLAKSNAQRCA 74

Query:    75 DFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQG---LY 131
             +FRETA++I+KVGFK+FL +T TV+NW +D    S+I ++NPL DFVELPD  +    L+
Sbjct:    75 NFRETADMISKVGFKIFLNITPTVTNWASDNNQFSLIFDENPLADFVELPDDGRAQDELW 134

Query:   132 YCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 185
             + NIL G++RGALEMV M+ E  ++ D+LRGDD  E++V L++ + +E P + D
Sbjct:   135 FSNILCGILRGALEMVQMQIEAHFVSDILRGDDTTEMRVSLVRYIEDEVPPESD 188

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0033106 "cis-Golgi network membrane" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

POMBASE|SPAC644.18c bet3 "TRAPP complex subunit Bet3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 94/178 (52%), Positives = 128/178 (71%)

Query:     9 GDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKS 68
             G+ ++  V++VNAELF LTYG+ V QL  D+   E+VN++LD+MGYNIGIRLI++FLAK+
Sbjct:     7 GEDVYKKVDKVNAELFVLTYGSIVAQLCKDMN-YEKVNEELDKMGYNIGIRLIEDFLAKT 65

Query:    69 NVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-DTC 127
                RC DFRET E +AKVGFK+FL  +  +S+   DG    + L+DNPL +FVELP D  
Sbjct:    66 EWPRCADFRETGETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPADAR 125

Query:   128 QGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 185
             Q L+Y NIL GVIRGALEM+ M  +  ++RD+LRGD+  E++V L + + EE P  D+
Sbjct:   126 QKLWYSNILCGVIRGALEMLQMDVDAVFLRDILRGDEHTEIRVHLKRILKEEIPPGDE 183

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0030008 "TRAPP complex" evidence=ISO

GO:0032313 "regulation of Rab GTPase activity" evidence=IC

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZI57	TPPC3_CHICK	No assigned EC number	0.5757	0.8870	0.9166	yes	no
Q86K94	TPPC3_DICDI	No assigned EC number	0.5659	0.9731	0.9731	yes	no
P36149	BET3_YEAST	No assigned EC number	0.4666	0.9516	0.9170	yes	no
O43617	TPPC3_HUMAN	No assigned EC number	0.5636	0.8870	0.9166	yes	no
Q5U1Z2	TPPC3_RAT	No assigned EC number	0.5696	0.8870	0.9166	yes	no
O55013	TPPC3_MOUSE	No assigned EC number	0.5696	0.8870	0.9166	yes	no
Q9P6P5	BET3_SCHPO	No assigned EC number	0.5222	0.9569	0.9726	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
pfam04051	148	pfam04051, TRAPP, Transport protein particle (TRAP	2e-58
COG5128	208	COG5128, COG5128, Transport protein particle (TRAP	3e-04

>gnl|CDD|217862 pfam04051, TRAPP, Transport protein particle (TRAPP) component

 Score =  179 bits (457), Expect = 2e-58
 Identities = 67/152 (44%), Positives = 83/152 (54%), Gaps = 5/152 (3%)

Query: 23  LFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEV 82
           LF L YG  V  LL D   VE+VN +L++MGYNIG RLI+  LA+S   RC D  E  + 
Sbjct: 1   LFALLYGELVSYLLRD---VEDVNARLEKMGYNIGQRLIERLLARSGSKRCTDLLEVLKF 57

Query: 83  IAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRG 142
           I K  +KM  G  A V     DG    +I  DNPL  FVELP    GL Y N L G+IRG
Sbjct: 58  ICKDLWKMLFGKQADVLETSHDGE-YVLIDNDNPLSQFVELPPDYSGLNYLNFLCGIIRG 116

Query: 143 ALEMVSMKTEVTWIRDVLRGDDA-YELQVKLL 173
           AL  +    +VT   D LRG    +E++ +  
Sbjct: 117 ALSSLGFPAKVTAHSDPLRGPGTVFEIKFEKS 148

TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterized TRAPP proteins and has a dimeric structure with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi. Length = 148

>gnl|CDD|227457 COG5128, COG5128, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 14/144 (9%)

Query: 19  VNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRE 78
           V        +   +  L+     +++   +L  +GY +GI+L+ E     N  R    RE
Sbjct: 40  VPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLL-ELC---NFRRRNPKRE 95

Query: 79  T--AEVIAKVGFKMFLGVTATVSN-----WDADGTCCSIILEDNPLVD-FVELPDTCQGL 130
                ++ ++ F ++  +     +      + D     +I++++PL+  F+ +PD   GL
Sbjct: 96  VRILTILQRIHFDLWSYLFGDSDDRLEKSREVDRE--YMIVDNDPLLSRFISVPDEWNGL 153

Query: 131 YYCNILSGVIRGALEMVSMKTEVT 154
              +I+ G+I+G L       EVT
Sbjct: 154 SCDSIVCGIIQGFLMAAGFPCEVT 177

Length = 208

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
KOG3330	183	consensus Transport protein particle (TRAPP) compl	100.0
PTZ00391	168	transport protein particle component (TRAPP) super	100.0
PF04051	152	TRAPP: Transport protein particle (TRAPP) componen	100.0
KOG3315	191	consensus Transport protein particle (TRAPP) compl	100.0
COG5128	208	Transport protein particle (TRAPP) complex subunit	100.0
KOG3316	163	consensus Transport protein particle (TRAPP) compl	100.0
COG1719	158	Predicted hydrocarbon binding protein (contains V4	95.04
TIGR02019	188	BchJ bacteriochlorophyll 4-vinyl reductase. This m	92.33
PF02830	62	V4R: V4R domain; InterPro: IPR004096 Central cellu	91.68
PF14196	149	ATC_hydrolase: L-2-amino-thiazoline-4-carboxylic a	80.6

>KOG3330 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-56  Score=353.07  Aligned_cols=180  Identities=59%  Similarity=0.983  Sum_probs=174.8

Q ss_pred             CCchhhhhhchhhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 029844            6 PRSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAK   85 (186)
Q Consensus         6 ~~~~~~~~~~~~~vs~~~f~~l~~e~V~q~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld~l~fI~k   85 (186)
                      ++.|+++|++..+||+++|.++||+||+|+|+|+++.++||++|++||||||.||+|.|++|++.|||.|++++.+.|||
T Consensus         3 ~~~g~~i~~~~~k~naELFtLTYGaiV~ql~kDyed~e~Vn~qLdkMGyNiG~RLiedFLAks~vpRC~dfretaevlak   82 (183)
T KOG3330|consen    3 KAIGQAIAKKSKKMNAELFTLTYGAIVTQLCKDYEDPEDVNKQLDKMGYNIGIRLIEDFLAKSNVPRCVDFRETAEVLAK   82 (183)
T ss_pred             hhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhcCHHHHHHHHHhccchhhHHHHHHHHhhcCCchhhhHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCccccccccCCCCCeEEEeecCCcccccccCCCc-cCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCC
Q 029844           86 VGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDT-CQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDD  164 (186)
Q Consensus        86 ~~Wk~lfgk~ad~l~~t~~~~~y~L~~d~npl~~fv~lp~~-~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~g~~  164 (186)
                      .++|+++|+++....|+.++++|.|++++|||++||+.|++ .+.|||++++||+|||||++++|+|+|.|++|.++||.
T Consensus        83 ~afkmyLgitpsitswss~~~efsliLe~NPL~efVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~f~~d~lrGd~  162 (183)
T KOG3330|consen   83 VAFKMYLGITPSITSWSSDGNEFSLILEDNPLVEFVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVVFLSDTLRGDS  162 (183)
T ss_pred             hhhheeeecccceeeecCCCCEEEEEecCCcHHHHHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheeeeeeehhcCCC
Confidence            99999999999999999999999999999999999987766 56799999999999999999999999999999999999


Q ss_pred             ceEEEEEecccccccCCCCCC
Q 029844          165 AYELQVKLLKQVPEEYPYKDD  185 (186)
Q Consensus       165 ~t~~~Ikf~~~~~~~~~~~~~  185 (186)
                      .|+|+|+|.+.++|++|+++|
T Consensus       163 ~tEIrv~f~r~lkde~P~ged  183 (183)
T KOG3330|consen  163 VTEIRVRFLRILKDELPAGED  183 (183)
T ss_pred             ceeeeeeHHHHHhhhcCCCCC
Confidence            999999999999999999986

>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional

Probab=100.00  E-value=1.7e-51  Score=330.62  Aligned_cols=157  Identities=17%  Similarity=0.263  Sum_probs=141.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHhhhhHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHhhhhhhcCccc
Q 029844           19 VNAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLAKS-NVTRCVDFRETAEVIAKVGFKMFLGVTA   96 (186)
Q Consensus        19 vs~~~f~~l~~e~V~q~~~~~~-~~~ev~~~Le~mGy~IG~RLiE~~~~r~-~~~R~~~~ld~l~fI~k~~Wk~lfgk~a   96 (186)
                      ||+|+|+|||+||| ||++++. +.++++++|++|||+||.||+|++..|+ +.+|+++++++|+|||+++|+.+||||+
T Consensus         1 vslsafafLf~EmV-~y~~~~~~~~~ele~rL~~~G~~VG~rllE~l~~r~~~~~R~~~~L~iLkFI~~~~W~~lFgk~a   79 (168)
T PTZ00391          1 VSLSSFAFLFSEIV-QYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKILSILTFISKHVWKYLFGHSS   79 (168)
T ss_pred             CCHHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHhHHHhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHHhCchh
Confidence            79999999999999 7887765 8889999999999999999999999886 4689999999999999999999999999


Q ss_pred             cccccCCCCCeEEEeecCCcc-cccccCCCccCCCcchhhhhHHHHHHhhcCCceEE--EEEeecccCCCCceEEEEEec
Q 029844           97 TVSNWDADGTCCSIILEDNPL-VDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTE--VTWIRDVLRGDDAYELQVKLL  173 (186)
Q Consensus        97 d~l~~t~~~~~y~L~~d~npl-~~fv~lp~~~~~l~y~~~~cGiIrGaL~~lg~~~~--v~~~~d~~~g~~~t~~~Ikf~  173 (186)
                      |+|++++|+|+|||+ |++|+ ++|+|+|++++.++|++|+||||||||+++||+|+  ||+++++- .+.+|+|.|||+
T Consensus        80 D~Lkt~d~~~~Y~i~-Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~-~~~~t~~likf~  157 (168)
T PTZ00391         80 DLLKSQDSDDEYMIN-DKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTP-KNFSTTILIKFY  157 (168)
T ss_pred             hhhcccCCCCeEEEE-eCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCC-CCCceEEEEEec
Confidence            999855789999999 99997 66999999999999999999999999999999875  45554432 244999999999


Q ss_pred             ccccc
Q 029844          174 KQVPE  178 (186)
Q Consensus       174 ~~~~~  178 (186)
                      ++|.+
T Consensus       158 ~~v~~  162 (168)
T PTZ00391        158 PEVIE  162 (168)
T ss_pred             HHHHH
Confidence            99976

>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment

Probab=100.00  E-value=4e-47  Score=300.75  Aligned_cols=149  Identities=38%  Similarity=0.561  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHhhhhhhcCcccccccc
Q 029844           23 LFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNW  101 (186)
Q Consensus        23 ~f~~l~~e~V~q~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r-~~~~R~~~~ld~l~fI~k~~Wk~lfgk~ad~l~~  101 (186)
                      +|+|||+|||+++.+ +++.++++++|++|||+||.||+|+++.+ ...+||.+++|+++||||++|+++||||+|+|+ 
T Consensus         1 ~f~~l~~e~V~~~~~-~~~~~e~~~~Le~~G~~vG~rl~E~~~~~~~~~~r~~~~~~~~~fI~k~~W~~~fgk~~d~l~-   78 (152)
T PF04051_consen    1 AFALLFGEMVQYLLR-REDVEEVNKRLERMGYNVGQRLAERLLRRRKNSPRFTDILDILKFICKDFWKMLFGKQADNLK-   78 (152)
T ss_dssp             HHHHHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTCSTSSHHHHHHHHHHHHHHHHHSS--SEEE-
T ss_pred             CHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhHHHHHHHHHHhccCcccCCHHHHHHHHHHHHHHHHhCCCCcccc-
Confidence            699999999966665 66999999999999999999999999998 567999999999999999999999999999999 


Q ss_pred             CCC-CCeEEEeecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEEecc
Q 029844          102 DAD-GTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLK  174 (186)
Q Consensus       102 t~~-~~~y~L~~d~npl~~fv~lp~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~g~~~t~~~Ikf~~  174 (186)
                      +|| +|+|+|+..++|+++|+++|++++.++|++|+||||||||+++||+|+|+...+.+ .+|+|+|.|||++
T Consensus        79 ~n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~-~~~~~~f~Ik~~~  151 (152)
T PF04051_consen   79 TNHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVTAESDPL-NGPQTTFQIKFEK  151 (152)
T ss_dssp             EETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEEEEECCC-GTTEEEEEEEEEH
T ss_pred             ccCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEEEEEecc-CCCCeEEEEEEec
Confidence            555 99999984446789999999988899999999999999999999999999998887 4478999999986

TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....

>KOG3315 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.7e-45  Score=288.85  Aligned_cols=164  Identities=19%  Similarity=0.342  Sum_probs=150.2

Q ss_pred             CchhhhhhchhhhHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHhhhhHHHHHHHHHHhhc-CCCCCCCHHHHHHHHH
Q 029844            7 RSGDAIFANVERVNAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLAKS-NVTRCVDFRETAEVIA   84 (186)
Q Consensus         7 ~~~~~~~~~~~~vs~~~f~~l~~e~V~q~~~~~~-~~~ev~~~Le~mGy~IG~RLiE~~~~r~-~~~R~~~~ld~l~fI~   84 (186)
                      .+.+++-.+.++||+|+|+|||+||| ||++... ++.|++.+|.++||+||.||+|++.+|+ +.+|+++++.++.||+
T Consensus        15 il~~~L~~~rtEvslS~fA~Lfsemi-qy~q~qv~tv~d~e~kL~~~G~~VG~rllel~~~rEr~~kREtkilgiL~fi~   93 (191)
T KOG3315|consen   15 ILDKSLSKGRTEVSLSAFAFLFSEMI-QYLQSQVFTVADLETKLADYGYQVGIRLLELLNFRERGQKRETKILGILQFIH   93 (191)
T ss_pred             hhhhhhhccCccccHHHHHHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence            35566666778999999999999999 8998885 9999999999999999999999999997 6789999999999999


Q ss_pred             HhhhhhhcCccccccc-cCCCCCeEEEeecCCcc-cccccCCCccCCCcchhhhhHHHHHHhhcCCceE--EEEEeeccc
Q 029844           85 KVGFKMFLGVTATVSN-WDADGTCCSIILEDNPL-VDFVELPDTCQGLYYCNILSGVIRGALEMVSMKT--EVTWIRDVL  160 (186)
Q Consensus        85 k~~Wk~lfgk~ad~l~-~t~~~~~y~L~~d~npl-~~fv~lp~~~~~l~y~~~~cGiIrGaL~~lg~~~--~v~~~~d~~  160 (186)
                      .++||.+|||.+|.|+ .+++.++|+|+ |++|+ ++|+|+|++++.++|.+|+||||+|+|.+.||+|  ||||+|   
T Consensus        94 ~tvwk~Lfgk~ad~LEka~d~~~tYmii-d~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckVTAh~~P---  169 (191)
T KOG3315|consen   94 STVWKYLFGKEADKLEKANDDDRTYMII-DKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKVTAHWHP---  169 (191)
T ss_pred             HHHHHHHhcchHHHHHhcccccceEEEE-cCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCceeeeecC---
Confidence            9999999999999995 47789999999 99998 6699999999999999999999999999999977  778886   


Q ss_pred             CCCCceEEEEEecccccc
Q 029844          161 RGDDAYELQVKLLKQVPE  178 (186)
Q Consensus       161 ~g~~~t~~~Ikf~~~~~~  178 (186)
                         .+|+++|||++.|.+
T Consensus       170 ---~gt~~~IkF~~~Via  184 (191)
T KOG3315|consen  170 ---EGTTYLIKFDESVIA  184 (191)
T ss_pred             ---CCCeEEEEecHHHHh
Confidence               259999999999865

>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.6e-41  Score=268.17  Aligned_cols=175  Identities=18%  Similarity=0.298  Sum_probs=156.2

Q ss_pred             CCCCCchhhhhh-----chhhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhc-CCCCCCCH
Q 029844            3 PVGPRSGDAIFA-----NVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKS-NVTRCVDF   76 (186)
Q Consensus         3 ~~~~~~~~~~~~-----~~~~vs~~~f~~l~~e~V~q~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~-~~~R~~~~   76 (186)
                      +.++-+|++++.     ++.+||+|+|+|||+||+.++....+...+++.+|.++||+||+||+|++.+|. +++|..++
T Consensus        19 s~a~~m~~~vy~qnl~~~~~ev~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vGikLlEL~nfr~rnpkre~rI   98 (208)
T COG5128          19 STAPLMGKSVYEQNLKIMKREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPKREVRI   98 (208)
T ss_pred             ccccccchhHHHHhHHHHhccCchHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHHHHHHHHHHHhhhCccchhhH
Confidence            457778888883     577899999999999999656566668999999999999999999999999987 78899999


Q ss_pred             HHHHHHHHHhhhhhhcCccccccc-cCCCCCeEEEeecCCcc-cccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEE
Q 029844           77 RETAEVIAKVGFKMFLGVTATVSN-WDADGTCCSIILEDNPL-VDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVT  154 (186)
Q Consensus        77 ld~l~fI~k~~Wk~lfgk~ad~l~-~t~~~~~y~L~~d~npl-~~fv~lp~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~  154 (186)
                      ++++++|+-++|+++||+.+|.|+ +.+..++|||+ |++|+ ++|+++|+++++++|.+|+||||+|+|.+.||+|.|+
T Consensus        99 l~iLq~ih~~lwsylf~~~~d~leKs~e~d~eYmiv-Dn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vt  177 (208)
T COG5128          99 LTILQRIHFDLWSYLFGDSDDRLEKSREVDREYMIV-DNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVT  177 (208)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHhhhcCceeEEe-cCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCcce
Confidence            999999999999999999999995 45678999999 99997 7899999999999999999999999999999999776


Q ss_pred             EeecccCCCC-ceEEEEEecccccc
Q 029844          155 WIRDVLRGDD-AYELQVKLLKQVPE  178 (186)
Q Consensus       155 ~~~d~~~g~~-~t~~~Ikf~~~~~~  178 (186)
                      -.+.+..+.| +|+|+|+|++.|.+
T Consensus       178 Ah~~P~~~~p~Rtv~lI~~d~~vi~  202 (208)
T COG5128         178 AHPEPSENLPNRTVFLIRIDDLVIA  202 (208)
T ss_pred             eccCcccCCCcceEEEEEecHHHHh
Confidence            6666666655 99999999998865

>KOG3316 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.8e-36  Score=234.87  Aligned_cols=146  Identities=16%  Similarity=0.195  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHHhcc---c------cHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhh
Q 029844           21 AELFTLTYGATVRQLLTDL---E------EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMF   91 (186)
Q Consensus        21 ~~~f~~l~~e~V~q~~~~~---~------~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld~l~fI~k~~Wk~l   91 (186)
                      .-+|++|+.|||+......   +      ...+..++||.|||+||.+|.|+++.  +.+|+.+.+|+|||||||+|+..
T Consensus         4 ~v~f~~Lh~EmV~~~~~~e~d~e~g~~~~~k~~~~~~LE~IGFqVG~~L~Erl~~--e~~rf~deLeimKFiCkDfW~~V   81 (163)
T KOG3316|consen    4 EVLFDFLHNEMVHTALRSEEDSENGRASIEKSHDLARLESIGFQVGRKLSERLTR--ERNRFKDELEIMKFICKDFWSIV   81 (163)
T ss_pred             hHHHHHHHHHHHHHHHHhcchhhcccccccchHHHHHHHHhhhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHH
Confidence            3469999999995443321   1      23346789999999999999999995  46799999999999999999999


Q ss_pred             cCccccccccCCCCCeEEEeecCCcccccccCCCc----cCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceE
Q 029844           92 LGVTATVSNWDADGTCCSIILEDNPLVDFVELPDT----CQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYE  167 (186)
Q Consensus        92 fgk~ad~l~~t~~~~~y~L~~d~npl~~fv~lp~~----~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~g~~~t~  167 (186)
                      ||||+|||| |||+|+|||+ |+. +.-+.++|+.    .....|++|+||+|||+|.++|+++.|+---   ...|.+-
T Consensus        82 F~KQiDNLr-TNhrG~yVlq-D~~-Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siVtA~v---~slPtck  155 (163)
T KOG3316|consen   82 FKKQIDNLR-TNHRGTYVLQ-DNK-FRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIVTASV---SSLPTCK  155 (163)
T ss_pred             Hhhhhhhcc-ccCCceEEEe-cCc-eeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEEeeec---CCCCceE
Confidence            999999999 9999999998 553 2222233332    2345899999999999999999998664422   2347899


Q ss_pred             EEEEecc
Q 029844          168 LQVKLLK  174 (186)
Q Consensus       168 ~~Ikf~~  174 (186)
                      |.|++.+
T Consensus       156 FhV~v~~  162 (163)
T KOG3316|consen  156 FHVQVQP  162 (163)
T ss_pred             EEEEecC
Confidence            9998864

>COG1719 Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only]

Probab=95.04  E-value=0.38  Score=38.37  Aligned_cols=109  Identities=23%  Similarity=0.276  Sum_probs=68.3

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcCccccccccCCCCCeEEEeecCCcccccccCCC
Q 029844           46 NKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPD  125 (186)
Q Consensus        46 ~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld~l~fI~k~~Wk~lfgk~ad~l~~t~~~~~y~L~~d~npl~~fv~lp~  125 (186)
                      ...+..+|+.+|..++.          ...+.++.+|+.-  |....+.-.+.-  .+......+. |..+-..   +|.
T Consensus        48 ~~~~y~~G~~~G~~l~~----------~~~~~~~~~f~~~--~~~~~~~v~~~~--~~~~~~v~v~-~c~~c~~---~p~  109 (158)
T COG1719          48 EPVLYEAGKEIGKALIK----------EKLIEELENFLEF--WEEVGGGVLEVE--EEEPLVVEVY-DCIECAG---LPG  109 (158)
T ss_pred             HHHHHHHHHHHHHHhcc----------hhchHHHHHHHHH--HHhhcceEEEcc--cCCCceEEEE-cCchhhc---CCC
Confidence            46788999999998886          2233444444422  665555333321  1112333432 3332232   443


Q ss_pred             ccCCCcchhhhhHHHHHHhhcCCc-eEEEEEeecccCCCCceEEEEEecc
Q 029844          126 TCQGLYYCNILSGVIRGALEMVSM-KTEVTWIRDVLRGDDAYELQVKLLK  174 (186)
Q Consensus       126 ~~~~l~y~~~~cGiIrGaL~~lg~-~~~v~~~~d~~~g~~~t~~~Ikf~~  174 (186)
                        .+-.-+.+.+|+|.|+|+...= ++.|.=++....|++.++|+|+...
T Consensus       110 --~~ePvC~~~aG~iag~l~~~~~k~~~v~Et~C~~~G~~~C~F~i~~~~  157 (158)
T COG1719         110 --IGEPVCHLEAGFIAGFLEEILGKKVEVEETECAAEGDDRCVFEIRLKD  157 (158)
T ss_pred             --CCCcchhHHhhHHHHHHHHHhCCCeEEEEEEEeecCCCceEEEEEecC
Confidence              2334578999999999998655 5677777887889999999998754

>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase

Probab=92.33  E-value=0.74  Score=37.98  Aligned_cols=136  Identities=14%  Similarity=0.113  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHH-HHHHHhhcCCCCCCCHHHH-------HHHHHHhhhhh
Q 029844           19 VNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL-IDEFLAKSNVTRCVDFRET-------AEVIAKVGFKM   90 (186)
Q Consensus        19 vs~~~f~~l~~e~V~q~~~~~~~~~ev~~~Le~mGy~IG~RL-iE~~~~r~~~~R~~~~ld~-------l~fI~k~~Wk~   90 (186)
                      |+.+.|.-||.++=.     .-..+.-..-|.+.|.+.|.++ .+++..  -..+..+.+++       +.-|.|++|+ 
T Consensus        44 v~E~~~~aL~~aL~~-----elG~~aa~~vl~~~G~~ta~y~l~~rIp~--~~q~~Lr~lp~~~~~r~l~~aI~k~aWt-  115 (188)
T TIGR02019        44 LPESQFSTLHRWLRD-----TLGETAAARLLRESGLATADYILANRIPP--PAQRLIRALPAGLAARVLLTAIAKHAWT-  115 (188)
T ss_pred             CCHHHHHHHHHHHHH-----HhCHHHHHHHHHHHhHHHHHHHHHHHhhH--HHHHHHHHCChHHHHHHHHHHHHHHHHh-
Confidence            566666666655441     1133344566777777777666 333321  01122333333       3446889995 


Q ss_pred             hcCccccccccCCCCCeEEEeecCCcccccccCCCccCCCcchhhhhHHHHHHhhcC-CceEEEEEeecccCCCCceEEE
Q 029844           91 FLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMV-SMKTEVTWIRDVLRGDDAYELQ  169 (186)
Q Consensus        91 lfgk~ad~l~~t~~~~~y~L~~d~npl~~fv~lp~~~~~l~y~~~~cGiIrGaL~~l-g~~~~v~~~~d~~~g~~~t~~~  169 (186)
                      +-|---  +. -..++.-+|...++|...-  +|.  +.+. ++|-+|+++|.++.+ +=+++|.-+...-.|++.+.|.
T Consensus       116 f~G~G~--fs-~~~~~~l~i~I~ds~~a~~--~~~--~~P~-C~~~aGife~lFs~lv~~~~~v~Et~C~a~G~~~C~F~  187 (188)
T TIGR02019       116 FAGSGK--FR-YVSGPPLSFEIARNPVVAG--ESS--DTPV-CHWYAAVFERLLRRLVWPHVAVRETACCAKGAPRCRFE  187 (188)
T ss_pred             hcccce--EE-EeeCCCeEEEEecChhhhc--CCC--CCce-eeeeHHHHHHHHHHHhCCCceEEeehHhhcCCCcceee
Confidence            222110  11 1122223333345555331  121  3344 668899999998764 5567787778888899999887


Q ss_pred             E
Q 029844          170 V  170 (186)
Q Consensus       170 I  170 (186)
                      |
T Consensus       188 ~  188 (188)
T TIGR02019       188 L  188 (188)
T ss_pred             C
Confidence            4

This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.

>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains

Probab=91.68  E-value=0.44  Score=31.82  Aligned_cols=40  Identities=23%  Similarity=0.361  Sum_probs=31.7

Q ss_pred             chhhhhHHHHHHhhc-CCceEEEEEeecccCCCCceEEEEE
Q 029844          132 YCNILSGVIRGALEM-VSMKTEVTWIRDVLRGDDAYELQVK  171 (186)
Q Consensus       132 y~~~~cGiIrGaL~~-lg~~~~v~~~~d~~~g~~~t~~~Ik  171 (186)
                      -.+|.+|++.|+++. .|-+++|+=++..-.|++..+|.|+
T Consensus        21 ~C~~~~G~~~G~~~~~~~~~~~v~E~~C~a~G~~~C~F~i~   61 (62)
T PF02830_consen   21 VCWFTAGYLAGFFSALFGKEVEVEETKCQAMGDDHCEFVIR   61 (62)
T ss_dssp             --HHHHHHHHHHHHHHHSSEEEEEEEE-GGGT-SSEEEEEE
T ss_pred             eEHHHHHHHHHHHHHHhCCceEEEEeEEEcCCCCeeEEEEE
Confidence            447999999999965 4668899889999999999999986

The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.

>PF14196 ATC_hydrolase: L-2-amino-thiazoline-4-carboxylic acid hydrolase

Probab=80.60  E-value=22  Score=26.79  Aligned_cols=133  Identities=18%  Similarity=0.210  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcCcccccc
Q 029844           20 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVS   99 (186)
Q Consensus        20 s~~~f~~l~~e~V~q~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld~l~fI~k~~Wk~lfgk~ad~l   99 (186)
                      .+..|..+|-++...+-. .+..+-+.+-+...|...|.++.++...    + ..++....+.....-+...|.   ...
T Consensus        13 ~a~~~~~ly~~~~~~~~~-e~~~~~~~~a~~~~~~~~g~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~---~~~   83 (149)
T PF14196_consen   13 RAFWFYALYKALIEEMGP-EEAEEIIREAIRRFGRKRGKALAERMRR----K-PDDFEKFAEMMKDYPSDWVFE---EVV   83 (149)
T ss_pred             HHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh----c-hhhHHHHHHHHhcCCccccce---eee
Confidence            344445555555522211 1122334566888888888887776652    1 334444444121211222222   222


Q ss_pred             ccCCCCCeEEEeecCCcccc-cccCCCccCCCcchhhhhHHHHHHhhcC--CceEEEEEeecccCCCCceEEE
Q 029844          100 NWDADGTCCSIILEDNPLVD-FVELPDTCQGLYYCNILSGVIRGALEMV--SMKTEVTWIRDVLRGDDAYELQ  169 (186)
Q Consensus       100 ~~t~~~~~y~L~~d~npl~~-fv~lp~~~~~l~y~~~~cGiIrGaL~~l--g~~~~v~~~~d~~~g~~~t~~~  169 (186)
                        ..+.+.|.+.+-.-|+.+ +..    ++..-+..++|-+=+++.+.+  |++.+-+  +.--.|++.+.|+
T Consensus        84 --~~~~~~~~~~~~~Cp~~~~~k~----~G~~e~~~~~C~~D~~~~~~~~~~~~l~r~--~tla~G~~~Cdf~  148 (149)
T PF14196_consen   84 --EDDEDEFEFDFTRCPYAEFWKE----YGLPELGPIYCDIDYAMAEGFNPGIRLERT--KTLADGDDCCDFR  148 (149)
T ss_pred             --cCCCCeEEEEEEeChHHHHHHH----cCCchHHhHhhhhhHHHHHhCCCCcEEEEe--eEEeCCCCcCccC
Confidence              355667777767889866 333    344567777888888888888  6655322  2223477777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	186
2j3r_A	182	The Crystal Structure Of The Bet3-Trs31 Heterodimer		1e-53
1wc8_A	180	The Crystal Structure Of Mouse Bet3p Length = 180		1e-53
1sz7_A	200	Crystal Structure Of Human Bet3 Length = 200		2e-53
2cfh_A	194	Structure Of The Bet3-Tpc6b Core Of Trapp Length =		3e-53
1wc9_A	165	The Crystal Structure Of Truncated Mouse Bet3p Leng		9e-53
3kxc_A	194	Mutant Transport Protein Length = 194		2e-52
2c0j_A	161	Crystal Structure Of The Bet3-Trs33 Heterodimer Len		4e-52
2pwn_A	192	Crystal Structure Of Bet3 Homolog (13277653) From M		6e-48
3cue_D	193	Crystal Structure Of A Trapp Subassembly Activating		9e-43

>pdb|2J3R|A Chain A, The Crystal Structure Of The Bet3-Trs31 Heterodimer. Length = 182

Iteration: 1
 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 128/165 (77%)
Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct: 14  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 73
Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 74  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 133
Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 134 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 178

>pdb|1WC8|A Chain A, The Crystal Structure Of Mouse Bet3p Length = 180

Iteration: 1
 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 128/165 (77%)
Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71
Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131
Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

>pdb|1SZ7|A Chain A, Crystal Structure Of Human Bet3 Length = 200

Iteration: 1
 Score =  204 bits (519), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 93/165 (56%), Positives = 128/165 (77%)
Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DF
Sbjct: 21  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDF 80
Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 81  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 140
Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 141 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 185

>pdb|2CFH|A Chain A, Structure Of The Bet3-Tpc6b Core Of Trapp Length = 194

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 93/165 (56%), Positives = 128/165 (77%)
Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DF
Sbjct: 26  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDF 85
Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 86  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 145
Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 146 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 190

>pdb|1WC9|A Chain A, The Crystal Structure Of Truncated Mouse Bet3p Length = 165

Iteration: 1
 Score =  202 bits (514), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 93/160 (58%), Positives = 126/160 (78%)
Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct: 5   KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 64
Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 65  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 124
Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQV 176
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++
Sbjct: 125 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRI 164

>pdb|3KXC|A Chain A, Mutant Transport Protein Length = 194

Iteration: 1
 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 92/165 (55%), Positives = 127/165 (76%)
Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV R  DF
Sbjct: 26  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRAHDF 85
Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 86  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 145
Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 146 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 190

>pdb|2C0J|A Chain A, Crystal Structure Of The Bet3-Trs33 Heterodimer Length = 161

Iteration: 1
 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 93/159 (58%), Positives = 124/159 (77%)
Query: 20  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 79
           ++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 1   SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 60
Query: 80  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 139
           A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct: 61  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 120
Query: 140 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPE 178
           +RGALEMV M  E  +++D L+GD   E++++ ++++ +
Sbjct: 121 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIED 159

>pdb|2PWN|A Chain A, Crystal Structure Of Bet3 Homolog (13277653) From Mus Musculus At 2.04 A Resolution Length = 192

Iteration: 1
 Score =  186 bits (472), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 89/151 (58%), Positives = 113/151 (74%)
Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           ++ ++ELFTLTYGA V QL  D E  E+VNKQLD+ GYNIG+RLI++FLA+SNV RC DF
Sbjct: 24  KKXSSELFTLTYGALVTQLCKDYENDEDVNKQLDRXGYNIGVRLIEDFLARSNVGRCHDF 83
Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FK +LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 84  RETADVIAKVAFKXYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 143
Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYE 167
            GV+RGALE V    E  +++D L+GD   E
Sbjct: 144 CGVLRGALEXVQXAVEAKFVQDTLKGDGVTE 174

>pdb|3CUE|D Chain D, Crystal Structure Of A Trapp Subassembly Activating The Rab Ypt1p Length = 193

Iteration: 1
 Score =  169 bits (428), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 125/180 (69%), Gaps = 3/180 (1%)
Query: 9   GDAIFAN-VERVNAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLA 66
           G+ I+ N  E++N ELFTLTYG+ V QL  D E +  +VN  L  MGYNIG RLI++FLA
Sbjct: 14  GEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLA 73
Query: 67  KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-D 125
           ++ + RC +  +T+EV++K  FK+FL +T  ++NW  +    S+IL++NPL DFVELP D
Sbjct: 74  RTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMD 133
Query: 126 TCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 185
             + L+Y NIL GV++G+LEMV +  +V ++ D+LRGD   E++VKL + + +E P  +D
Sbjct: 134 AMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
3cue_D	193	Transport protein particle 22 kDa subunit; membran	1e-88
1sz7_A	200	BET3 homolog, trafficking protein particle complex	4e-78
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	5e-34
2bjn_A	160	TPC6, trafficking protein particle complex subunit	2e-18
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	1e-14

>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 193

 Score =  257 bits (657), Expect = 1e-88
 Identities = 84/182 (46%), Positives = 125/182 (68%), Gaps = 3/182 (1%)

Query: 7   RSGDAIFAN-VERVNAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEF 64
             G+ I+ N  E++N ELFTLTYG+ V QL  D E +  +VN  L  MGYNIG RLI++F
Sbjct: 12  AMGEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDF 71

Query: 65  LAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP 124
           LA++ + RC +  +T+EV++K  FK+FL +T  ++NW  +    S+IL++NPL DFVELP
Sbjct: 72  LARTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELP 131

Query: 125 -DTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYK 183
            D  + L+Y NIL GV++G+LEMV +  +V ++ D+LRGD   E++VKL + + +E P  
Sbjct: 132 MDAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIG 191

Query: 184 DD 185
           +D
Sbjct: 192 ED 193

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A* Length = 200

 Score =  230 bits (588), Expect = 4e-78
 Identities = 93/171 (54%), Positives = 130/171 (76%)

Query: 15  NVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCV 74
             +++++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV RC 
Sbjct: 19  ESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCH 78

Query: 75  DFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCN 134
           DFRETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N
Sbjct: 79  DFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSN 138

Query: 135 ILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 185
           +L GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P  ++
Sbjct: 139 LLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 189

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B* Length = 188

 Score =  118 bits (296), Expect = 5e-34
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 2/138 (1%)

Query: 19  VNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSN-VTRCVDFR 77
           V+   F L +   V+   + +  V E+  +L  MG  +G  L+D  + +     R     
Sbjct: 24  VSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVL 83

Query: 78  ETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLV-DFVELPDTCQGLYYCNIL 136
                I    +K   G  A       D      I+E  PL+  ++ +P     L      
Sbjct: 84  NILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFT 143

Query: 137 SGVIRGALEMVSMKTEVT 154
            G++   L       +VT
Sbjct: 144 GGIVEAILTHSGFPAKVT 161

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C* Length = 160

 Score = 77.2 bits (190), Expect = 2e-18
 Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 7/141 (4%)

Query: 19  VNAELFTLTYGATVRQLLTDLE----EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCV 74
            +  LF L +   V  +    E    E      +L+ MG+ +G  LI E   K    R  
Sbjct: 4   ADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLI-ERFTKDT-ARFK 61

Query: 75  DFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQG-LYYC 133
           D  +  + I K  +             +  G       +   L          +    Y 
Sbjct: 62  DELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYL 121

Query: 134 NILSGVIRGALEMVSMKTEVT 154
               G+IRG L  + +K+ VT
Sbjct: 122 AFTCGLIRGGLSNLGIKSIVT 142

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B* Length = 160

 Score = 66.8 bits (163), Expect = 1e-14
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 14/145 (9%)

Query: 19  VNAELFTLTYGATVRQLLTDLEEVEEVNKQ-----LDQMGYNIGIRLIDEFLAKSNVTRC 73
            +  LF   +   V +L     +     ++     L+ MG+ +G  L  E L +      
Sbjct: 3   ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALG-ERLPR----ET 57

Query: 74  VDFRETAEV---IAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQG- 129
           + FRE  +V   + K  +             +  GT          L+         +  
Sbjct: 58  LAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPMASGLQYLEEA 117

Query: 130 LYYCNILSGVIRGALEMVSMKTEVT 154
             +     G++RGAL  + +++ VT
Sbjct: 118 PKFLAFTCGLLRGALYTLGIESVVT 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
3cue_D	193	Transport protein particle 22 kDa subunit; membran	100.0
1sz7_A	200	BET3 homolog, trafficking protein particle complex	100.0
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	100.0
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	100.0
3cue_B	283	Transport protein particle 31 kDa subunit; membran	100.0
2bjn_A	160	TPC6, trafficking protein particle complex subunit	100.0
2oso_A	163	Hypothetical protein MJ1460; structural genomics,	96.71
2kii_A	181	Putative uncharacterized protein; H-NOX, unknown f	94.64
3tfg_A	189	ALR2278 protein; heme-based sensor domain, GAS bin	94.44
3sj5_A	188	Methyl-accepting chemotaxis protein; no or O2-sens	91.69

>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-66  Score=425.31  Aligned_cols=185  Identities=44%  Similarity=0.819  Sum_probs=176.3

Q ss_pred             CCCCCCCchhhhhh-chhhhHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHH
Q 029844            1 MAPVGPRSGDAIFA-NVERVNAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRE   78 (186)
Q Consensus         1 ~~~~~~~~~~~~~~-~~~~vs~~~f~~l~~e~V~q~~~~~~-~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld   78 (186)
                      |++++++.|+.+|+ ++.+||+|+|+|||+|||+||+++++ +.++++++|++|||+||.||+|++++|++.+||.++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~~~R~~~~le   85 (193)
T 3cue_D            6 QSRSLKAMGEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLVK   85 (193)
T ss_dssp             --CHHHHHHHHHHSSSSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHH
T ss_pred             ccccccccchhhhccchhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhccCCCccCCHHH
Confidence            45667789999997 99999999999999999988999988 59999999999999999999999999988899999999


Q ss_pred             HHHHHHHhhhhhhcCccccccccCCCCCeEEEeecCCcccccccCCCcc-CCCcchhhhhHHHHHHhhcCCceEEEEEee
Q 029844           79 TAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTC-QGLYYCNILSGVIRGALEMVSMKTEVTWIR  157 (186)
Q Consensus        79 ~l~fI~k~~Wk~lfgk~ad~l~~t~~~~~y~L~~d~npl~~fv~lp~~~-~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~  157 (186)
                      +++||||++||++||||+|+|+||+|+++|+|++|+|||.+|+++|+++ +.++|++|+||||||||+++||+|+|||++
T Consensus        86 ~l~fI~k~~Wk~lfgk~~d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~~Vta~~~~  165 (193)
T 3cue_D           86 TSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVS  165 (193)
T ss_dssp             HHHHHHHHHHHHHSSCCCCCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             HHHHHHHHHHHHHhCCCCccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCCEEEEEEee
Confidence            9999999999999999999999999999999967999999999999988 789999999999999999999999999999


Q ss_pred             cccCCCCceEEEEEecccccccCCCCCC
Q 029844          158 DVLRGDDAYELQVKLLKQVPEEYPYKDD  185 (186)
Q Consensus       158 d~~~g~~~t~~~Ikf~~~~~~~~~~~~~  185 (186)
                      |+++|+++|+|+|||.+++.|++|++||
T Consensus       166 d~l~g~~~t~~~Ikf~~~v~d~~~~~~~  193 (193)
T 3cue_D          166 DILRGDSQTEIKVKLNRILKDEIPIGED  193 (193)
T ss_dssp             CSSSSSSCBCEEEECCCCCSCCCCCTTC
T ss_pred             ccCCCCCCEEEEEEEhhhhhcccCCCCC
Confidence            9999999999999999999999999986

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*

Probab=100.00  E-value=8.9e-64  Score=410.79  Aligned_cols=177  Identities=53%  Similarity=0.926  Sum_probs=155.4

Q ss_pred             hhhhhchhhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhh
Q 029844           10 DAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFK   89 (186)
Q Consensus        10 ~~~~~~~~~vs~~~f~~l~~e~V~q~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld~l~fI~k~~Wk   89 (186)
                      ..+|++..+||+|+|+|||+|||+|++++.++.++++++|++|||+||.||+|++++|++.+||++++|+++||||++||
T Consensus        14 ~~~~~~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~~~R~~d~le~l~fI~k~~Wk   93 (200)
T 1sz7_A           14 ANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFK   93 (200)
T ss_dssp             --------CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCHHHHHHHHHHTHHH
T ss_pred             hhhhcccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhccCCCccCCHHHHHHHHHHHHHH
Confidence            35788999999999999999999888888889999999999999999999999999998889999999999999999999


Q ss_pred             hhcCccccccccCCCCCeEEEeecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEE
Q 029844           90 MFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQ  169 (186)
Q Consensus        90 ~lfgk~ad~l~~t~~~~~y~L~~d~npl~~fv~lp~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~g~~~t~~~  169 (186)
                      ++||||+|+|+||+++++|+|++|+|||.+|+++|++++.++|++|+||||||||+++||+|||++++|+++|+++|+|+
T Consensus        94 ~lFgk~ad~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~Vta~~~~d~l~g~~~t~~~  173 (200)
T 1sz7_A           94 MYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR  173 (200)
T ss_dssp             HHHSCCCEEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEEEEEEEEECGGGTCSSEEEE
T ss_pred             HHhCCCCccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCEEEEEEEecccCCCCCEEEE
Confidence            99999999999999999999977999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecccccccCCCCCCC
Q 029844          170 VKLLKQVPEEYPYKDDE  186 (186)
Q Consensus       170 Ikf~~~~~~~~~~~~~~  186 (186)
                      |||.+++.|++|++||+
T Consensus       174 Ikf~~~v~~~~~~~~~~  190 (200)
T 1sz7_A          174 MRFIRRIEDNLPAGEEA  190 (200)
T ss_dssp             EEEEEEC----------
T ss_pred             EEEhhhhhhccCCCcch
Confidence            99999999999999974

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*

Probab=100.00  E-value=1e-54  Score=354.36  Aligned_cols=167  Identities=20%  Similarity=0.280  Sum_probs=144.5

Q ss_pred             CCCchhhhhhchhhhHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHhhcC-CCCCCCHHHHHHH
Q 029844            5 GPRSGDAIFANVERVNAELFTLTYGATVRQLLTDL-EEVEEVNKQLDQMGYNIGIRLIDEFLAKSN-VTRCVDFRETAEV   82 (186)
Q Consensus         5 ~~~~~~~~~~~~~~vs~~~f~~l~~e~V~q~~~~~-~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~-~~R~~~~ld~l~f   82 (186)
                      ...+.++|=....+||+|+|+|||+||| ||+++. ++.++++++|++|||+||.||+|++++|+. .+||++++|+++|
T Consensus        10 ~~i~~~~l~~~~~~Vs~s~f~ll~~EiV-~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~~d~ld~l~f   88 (188)
T 2j3w_B           10 SAILERSLTRPKTEVSVSAFALLFSEMV-QYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLF   88 (188)
T ss_dssp             -----------CCEEEHHHHHHHHHHHH-HHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHH
T ss_pred             CccccCccccchhHhhHHHHHHHHHHHH-HHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCcccCCHHHHHHH
Confidence            3445666666678899999999999999 777665 588999999999999999999999999975 4899999999999


Q ss_pred             HHHhhhhhhcCcccccccc-CCCCCeEEEeecCCccc-ccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeeccc
Q 029844           83 IAKVGFKMFLGVTATVSNW-DADGTCCSIILEDNPLV-DFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVL  160 (186)
Q Consensus        83 I~k~~Wk~lfgk~ad~l~~-t~~~~~y~L~~d~npl~-~fv~lp~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~  160 (186)
                      |||++||++||||+|+|+| |+|+++|+|+ |+||+. +|+++|+++++++|++|+||||||||+++||+|+|+...   
T Consensus        89 I~k~~Wk~lfgk~~d~L~~st~~~~~y~i~-D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~---  164 (188)
T 2j3w_B           89 IKVNVWKALFGKEADKLEQANDDDKTYYII-EKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHW---  164 (188)
T ss_dssp             HHTHHHHHHHSSCCSEEEEETTEEEEEEEE-ESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEE---
T ss_pred             HHHHHHHHHhCCCccccccccCCCCEEEEE-cCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEEEEe---
Confidence            9999999999999999997 8999999996 999996 699999999999999999999999999999988766655   


Q ss_pred             CCCCceEEEEEecccccc
Q 029844          161 RGDDAYELQVKLLKQVPE  178 (186)
Q Consensus       161 ~g~~~t~~~Ikf~~~~~~  178 (186)
                        +|+|+|+|||+++|.+
T Consensus       165 --~~~t~f~Ikf~~~v~~  180 (188)
T 2j3w_B          165 --HKGTTLMIKFDESVIA  180 (188)
T ss_dssp             --SSSEEEEEEECHHHHH
T ss_pred             --CCCEEEEEEecHHHHH
Confidence              5799999999999865

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*

Probab=100.00  E-value=4.9e-50  Score=319.47  Aligned_cols=149  Identities=15%  Similarity=0.149  Sum_probs=127.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcC
Q 029844           19 VNAELFTLTYGATVRQLLTDLE-----EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLG   93 (186)
Q Consensus        19 vs~~~f~~l~~e~V~q~~~~~~-----~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld~l~fI~k~~Wk~lfg   93 (186)
                      ||.|+|+|||+|||+|++++.+     +.++++++|++|||+||.||+|+++ | +.+||++++|+++||||++||++||
T Consensus         3 ~s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r-~~~r~~d~ld~l~fI~k~~Wk~~fg   80 (160)
T 2c0j_B            3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-R-ETLAFREELDVLKFLCKDLWVAVFQ   80 (160)
T ss_dssp             CCHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-G-GGGTTCCHHHHHHHHHTHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-h-ccCccCCHHHHHHHHHHHHHHHHhC
Confidence            6899999999999977777655     3567799999999999999999999 7 5789999999999999999999999


Q ss_pred             ccccccccCCCCCeEEEeecCC-cccccccCCCccC--CCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEE
Q 029844           94 VTATVSNWDADGTCCSIILEDN-PLVDFVELPDTCQ--GLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQV  170 (186)
Q Consensus        94 k~ad~l~~t~~~~~y~L~~d~n-pl~~fv~lp~~~~--~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~g~~~t~~~I  170 (186)
                      ||+|+|+ |||+|+|+|+ |++ |+.+|+++|+++.  .++|++|+||||||||+++||+|+|++....   .|.++|.|
T Consensus        81 k~~d~L~-t~~~~~y~l~-dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~~---~p~~~f~i  155 (160)
T 2c0j_B           81 KQMDSLR-TNHQGTYVLQ-DNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAA---LPVCKFQV  155 (160)
T ss_dssp             SCCSEEE-ECSSSEEEEE-ETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEESS---TTCEEEEE
T ss_pred             CcCccce-eCCCCEEEEE-CCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeecC---CCceEEEE
Confidence            9999999 8999999999 654 5799999999987  8999999999999999999999988886654   37899999


Q ss_pred             Eecc
Q 029844          171 KLLK  174 (186)
Q Consensus       171 kf~~  174 (186)
                      ||.+
T Consensus       156 ~~~~  159 (160)
T 2c0j_B          156 VIPK  159 (160)
T ss_dssp             ECCC
T ss_pred             Eeec
Confidence            9976

>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-50  Score=343.20  Aligned_cols=168  Identities=14%  Similarity=0.172  Sum_probs=140.1

Q ss_pred             CchhhhhhchhhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcC-----------------
Q 029844            7 RSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSN-----------------   69 (186)
Q Consensus         7 ~~~~~~~~~~~~vs~~~f~~l~~e~V~q~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~-----------------   69 (186)
                      .+.++|-.++.+||+|+|+|||+|||+|..++.++.+++++||+.|||+||.||+|++.+|+.                 
T Consensus        45 i~~~~l~~~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~s~~  124 (283)
T 3cue_B           45 IYSESLLFKRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLSQNE  124 (283)
T ss_dssp             ----------CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC---------------------
T ss_pred             ccccccccCcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCccccccccccccccc
Confidence            356677778899999999999999997777777799999999999999999999999988853                 


Q ss_pred             ---------------------------------------------CCCCCCHHHHHHHHHHhhhhhhcCcccccc-ccCC
Q 029844           70 ---------------------------------------------VTRCVDFRETAEVIAKVGFKMFLGVTATVS-NWDA  103 (186)
Q Consensus        70 ---------------------------------------------~~R~~~~ld~l~fI~k~~Wk~lfgk~ad~l-~~t~  103 (186)
                                                                   .+||.+++|+++||||++||++||||+|+| +|++
T Consensus       125 ss~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lektn~  204 (283)
T 3cue_B          125 SSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSE  204 (283)
T ss_dssp             ----------------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEECSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhccccC
Confidence                                                         389999999999999999999999999999 5556


Q ss_pred             CCCeEEEeecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccC-CCCceEEEEEecccccc
Q 029844          104 DGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLR-GDDAYELQVKLLKQVPE  178 (186)
Q Consensus       104 ~~~~y~L~~d~npl~~fv~lp~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~-g~~~t~~~Ikf~~~~~~  178 (186)
                      ++|+|||+.+++||++|++++    .++|++|+||||||||+++||+|+|++..+++. ++++|+|+|||+++|.|
T Consensus       205 ~~geYvL~Dn~~pLt~fVs~~----~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~~~~~T~~~IkF~~~v~~  276 (283)
T 3cue_B          205 RDNEYMIVDNFPTLTQFIPGE----NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQVLD  276 (283)
T ss_dssp             CSSCEEEEESSCSSSCSSCTT----CCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSSCTTCEEEECCCCHHHHH
T ss_pred             CCCEEEEEeCchHHHhhhccC----CcchhhhHHHHHHHHHHhCCCceEEEEEEcccccCCCceEEEEEecHHHHh
Confidence            779999996667789999974    689999999999999999999987777777776 56799999999999865

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*

Probab=100.00  E-value=9.6e-49  Score=311.99  Aligned_cols=151  Identities=21%  Similarity=0.238  Sum_probs=122.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccccH----HHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcC
Q 029844           18 RVNAELFTLTYGATVRQLLTDLEEV----EEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLG   93 (186)
Q Consensus        18 ~vs~~~f~~l~~e~V~q~~~~~~~~----~ev~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld~l~fI~k~~Wk~lfg   93 (186)
                      -+|.++|+|||+|||+|++++.++.    ++++++|++|||+||.||+|+++ | +.+||++++|+++||||++|+++||
T Consensus         3 m~s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r-~~~r~~~~ld~lkfI~k~~Wk~~fg   80 (160)
T 2bjn_A            3 MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-K-DTARFKDELDIMKFICKDFWTTVFK   80 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC-----------CHHHHHHHHTHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-h-ccCccCCHHHHHHHHHHHHHHHHhC
Confidence            4899999999999998778776644    36899999999999999999999 7 4799999999999999999999999


Q ss_pred             ccccccccCCCCCeEEEeecCCcccccccCCCccC--CCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEE
Q 029844           94 VTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQ--GLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVK  171 (186)
Q Consensus        94 k~ad~l~~t~~~~~y~L~~d~npl~~fv~lp~~~~--~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~g~~~t~~~Ik  171 (186)
                      ||+|+|+ |||+|+|+|+.+++|+.+|+++|+++.  .++|++|+||||||||+++||+|+|++....+   |.+.|.|+
T Consensus        81 k~~d~L~-t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~~~---p~~~F~i~  156 (160)
T 2bjn_A           81 KQIDNLR-TNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSM---PACKFQVM  156 (160)
T ss_dssp             SCCSEEE-EEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEESST---TCEEEEEE
T ss_pred             CCCcccc-cCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEecCC---CceEEEEE
Confidence            9999998 899999999944466899999999874  79999999999999999999999998887554   79999999


Q ss_pred             ecc
Q 029844          172 LLK  174 (186)
Q Consensus       172 f~~  174 (186)
                      +.+
T Consensus       157 ~~~  159 (160)
T 2bjn_A          157 IQK  159 (160)
T ss_dssp             EC-
T ss_pred             ecc
Confidence            875

>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*

Probab=96.71  E-value=0.0075  Score=47.09  Aligned_cols=132  Identities=19%  Similarity=0.185  Sum_probs=84.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhh-hcCc-
Q 029844           17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKM-FLGV-   94 (186)
Q Consensus        17 ~~vs~~~f~~l~~e~V~q~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld~l~fI~k~~Wk~-lfgk-   94 (186)
                      ..|..+.|.+++-.+-..+.....+..     |.++||..|..+.+.+           +..+     +++|+. -+|+ 
T Consensus        26 ~~vp~~~f~~l~~~l~~~l~~~G~~~~-----L~~~G~~~G~~l~~~~-----------~~~l-----~~~~~~~G~G~l   84 (163)
T 2oso_A           26 KKIPMPYFGLFALVIFDKVKELGSETS-----LYEIGEEFGKMLSPKN-----------IEEL-----KKIFKLMNFGDL   84 (163)
T ss_dssp             CCCCHHHHHHHHHHHHHHHC--CCCCC-----HHHHHHHHHHHHCCSS-----------HHHH-----HHHHHHHTCCEE
T ss_pred             CcccHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHH-----------HHHH-----HHHHHHcCceEE
Confidence            568899999999987754433222222     9999999999886531           1122     345543 2332 


Q ss_pred             cccccccCCCCCeEEEeecCCcccccccCCCccCCCcchhhhhHHHHHHhhcC-CceEEEEEeecccCCCCceEEEEEec
Q 029844           95 TATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMV-SMKTEVTWIRDVLRGDDAYELQVKLL  173 (186)
Q Consensus        95 ~ad~l~~t~~~~~y~L~~d~npl~~fv~lp~~~~~l~y~~~~cGiIrGaL~~l-g~~~~v~~~~d~~~g~~~t~~~Ikf~  173 (186)
                      .++......+.+.+++...++|...-   |   .+-.-++|.+|++.|+++.+ |=++.|.-++..-.|++.+.|.++..
T Consensus        85 ~i~~~~~~~~~~~~~i~v~~s~e~~~---~---~~~pvC~~~~G~~aG~~s~~~g~~~~~~E~~C~a~G~~~C~F~~~~~  158 (163)
T 2oso_A           85 EIDENKILLKNPPYKIKLSNPPYQWV---S---KEEPIHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVFEVKEV  158 (163)
T ss_dssp             ECCHHHHHHSCSCEEEEEESCSCTTC---C---CSSCCCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSEEEEEEEE
T ss_pred             EEEeccccccCCcEEEEEEeCceeec---C---CCCceeHHHHHHHHHHHHHHhCCCeEEEEeEeEcCCCCeEEEEEEEH
Confidence            22221000233557777677776532   2   23456788899999998864 66788888899999999999999987


Q ss_pred             cc
Q 029844          174 KQ  175 (186)
Q Consensus       174 ~~  175 (186)
                      +.
T Consensus       159 ~~  160 (163)
T 2oso_A          159 DE  160 (163)
T ss_dssp             C-
T ss_pred             HH
Confidence            64

>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*

Probab=94.64  E-value=0.5  Score=37.01  Aligned_cols=112  Identities=13%  Similarity=0.074  Sum_probs=71.9

Q ss_pred             HHHHHhhhhHHHHHHHH---HHhhcCCCCCCCHHHHHHH-HHHhhhhhhcCcccccccc-CCCCCeEEEeecCCcccccc
Q 029844           47 KQLDQMGYNIGIRLIDE---FLAKSNVTRCVDFRETAEV-IAKVGFKMFLGVTATVSNW-DADGTCCSIILEDNPLVDFV  121 (186)
Q Consensus        47 ~~Le~mGy~IG~RLiE~---~~~r~~~~R~~~~ld~l~f-I~k~~Wk~lfgk~ad~l~~-t~~~~~y~L~~d~npl~~fv  121 (186)
                      +-|+.+|...=..+.+.   ++ | ...-+.+++.-+.- |+..+=+.+-+-.+-..+. ..+++...|.+.        
T Consensus        64 ~ll~~fG~~~~~~~~~~y~~~l-~-~g~~~~dFL~~ld~~lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y~--------  133 (181)
T 2kii_A           64 DVVKAFGQFLFNGLASRHTDVV-D-KFDDFTSLVMGIHDVIHLEVNKLYHEPSLPHINGQLLPNNQIALRYS--------  133 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-G-GGSSHHHHHTTTTTTHHHHHHHHSSCSCCCEEEEEECSSSEEEEEEE--------
T ss_pred             HHHHHHHHHHHHHHHHHhHHHH-h-cCCCHHHHHHHHhHHHHHHHHHhCCCCCCCeeEEEECCCCEEEEEEe--------
Confidence            56777776653333333   22 1 12234444444444 6666666676666655543 234555555422        


Q ss_pred             cCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEEecc
Q 029844          122 ELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLK  174 (186)
Q Consensus       122 ~lp~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~g~~~t~~~Ikf~~  174 (186)
                      |     ... +..+..|+|+|+-+.+|-++++...+....|.+...|.|++.+
T Consensus       134 S-----~R~-l~~~~~Gli~~~A~~f~~~v~i~~~~~~~~~~~h~~f~i~~~~  180 (181)
T 2kii_A          134 S-----PRR-LCFCAEGLLFGAAQHFQQKIQISHDTCMHTGADHCMLIIELQN  180 (181)
T ss_dssp             C-----TTC-CHHHHHHHHHHHHHHTTCCEEEEEEECGGGTCSSEEEEEEECC
T ss_pred             c-----CCC-hHHHHHHHHHHHHHHhCCCeEEEEEeeccCCCCEEEEEEEecC
Confidence            2     123 8899999999999999999999877766667889999999875

>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*

Probab=94.44  E-value=0.49  Score=37.29  Aligned_cols=92  Identities=13%  Similarity=0.076  Sum_probs=65.4

Q ss_pred             CCCCCHHHHHHHHHHhhhhhhcCccccccccC-CCCCeEEEeecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCc
Q 029844           71 TRCVDFRETAEVIAKVGFKMFLGVTATVSNWD-ADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSM  149 (186)
Q Consensus        71 ~R~~~~ld~l~fI~k~~Wk~lfgk~ad~l~~t-~~~~~y~L~~d~npl~~fv~lp~~~~~l~y~~~~cGiIrGaL~~lg~  149 (186)
                      .-..+++..+.-|+..+=+.+-+-.+-..+.+ .+++...|.+        .|     ...-+..+..|+|+|+-+..|-
T Consensus        92 ~~l~dFL~~ld~lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y--------~S-----~R~gl~~~~~Gli~~~A~~f~~  158 (189)
T 3tfg_A           92 DSLPEFMENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHY--------QS-----TRCGLAPMVLGLLHGLGKRFQT  158 (189)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHSTTCCCCEEEEEEEETTEEEEEE--------EC-----SSSSCHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHhHHHHHHHHHHhCCCCCCCeEEEEECCCCEEEEEE--------EC-----CCCCHHHHHHHHHHHHHHHhCC
Confidence            34677788888888877777766665555321 2244555442        12     1223789999999999999888


Q ss_pred             eEEEEEeecccCCCCceEEEEEeccc
Q 029844          150 KTEVTWIRDVLRGDDAYELQVKLLKQ  175 (186)
Q Consensus       150 ~~~v~~~~d~~~g~~~t~~~Ikf~~~  175 (186)
                      ++++...+....+.+.++|.|++.+.
T Consensus       159 ~v~i~~~~~~~~~~~h~~f~i~~~~~  184 (189)
T 3tfg_A          159 KVEVTQTAFRETGEDHDIFSIKYEDS  184 (189)
T ss_dssp             EEEEEEEECTTTTSSSEEEEEEEEC-
T ss_pred             CeEEEEEeccCCCCCeEEEEEEECCC
Confidence            99998888776777899999999765

>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*

Probab=91.69  E-value=1.3  Score=34.93  Aligned_cols=117  Identities=15%  Similarity=0.099  Sum_probs=73.1

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHhhhhhhcCccccccccC-CCCCeEEEeecCCcccccccCC
Q 029844           47 KQLDQMGYNIGIRLIDEFLAKS-NVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWD-ADGTCCSIILEDNPLVDFVELP  124 (186)
Q Consensus        47 ~~Le~mGy~IG~RLiE~~~~r~-~~~R~~~~ld~l~fI~k~~Wk~lfgk~ad~l~~t-~~~~~y~L~~d~npl~~fv~lp  124 (186)
                      +-|+.+|...=..+.+.+- +- ...-+.+++.-+.-|+..+=+.+-+-.+-..+.+ .++++..|.+        -|  
T Consensus        65 ~ll~~fG~~~~~~~~~~y~-~~l~g~~~~dFL~~ld~lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y--------~S--  133 (188)
T 3sj5_A           65 EIWREVGRQNIKTFSEWFP-SYFAGRRLVNFLMMMDEVHLQLTKMIKGATPPRLIAKPVAKDAIEMEY--------VS--  133 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHCG-GGTTTCCHHHHHHTHHHHHHHTTTTSTTCCCCEEEEEEEETTEEEEEE--------EE--
T ss_pred             HHHHHHHHHHHHHHHHhHH-HHhCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCEEEEEE--------EC--
Confidence            4566666655444444321 10 1234556666667777777666666655555422 2345555542        22  


Q ss_pred             CccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCC-ceEEEEEecccccc
Q 029844          125 DTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDD-AYELQVKLLKQVPE  178 (186)
Q Consensus       125 ~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~g~~-~t~~~Ikf~~~~~~  178 (186)
                         .. -+..+..|+|+||-+-.|-++++.-++....++. ..+|+|+|++....
T Consensus       134 ---~R-gl~~~~~Gli~~aa~~f~~~v~i~~~~~~~~~~~~~~~~rl~f~~~~~~  184 (188)
T 3sj5_A          134 ---KR-KMYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKVRIKFKNPVFE  184 (188)
T ss_dssp             ---TT-CCHHHHHHHHHHHHHHHTCCEEEEEEEEEEETTEEEEEEEEEESSCCSC
T ss_pred             ---CC-CHHHHHHHHHHHHHHHhCCCeEEEEecccCCCCceEEEEEEEeeChhhh
Confidence               23 6789999999999999999998877765433322 77999999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d1wc9a_	161	d.278.1.2 (A:) Trafficking protein particle comple	4e-72
d2j3wb1	168	d.278.1.2 (B:21-188) TRAPPC5, similar to trafficki	7e-42

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  213 bits (543), Expect = 4e-72
 Identities = 93/160 (58%), Positives = 126/160 (78%)

Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct: 1   KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 60

Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 61  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 120

Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQV 176
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++
Sbjct: 121 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRI 160

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]} Length = 168

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

 Score =  136 bits (344), Expect = 7e-42
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 2/138 (1%)

Query: 19  VNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNV-TRCVDFR 77
           V+   F L +   V+   + +  V E+  +L  MG  +G  L+D  + +     R     
Sbjct: 4   VSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVL 63

Query: 78  ETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLV-DFVELPDTCQGLYYCNIL 136
                I    +K   G  A       D      I+E  PL+  ++ +P     L      
Sbjct: 64  NILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFT 123

Query: 137 SGVIRGALEMVSMKTEVT 154
            G++   L       +VT
Sbjct: 124 GGIVEAILTHSGFPAKVT 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1wc9a_	161	Trafficking protein particle complex subunit 3, Be	100.0
d2j3wb1	168	TRAPPC5, similar to trafficking protein particle c	100.0
d2osoa1	152	Hypothetical protein MJ1460 {Methanococcus jannasc	96.77
d1u55a_	188	Methyl-accepting chemotaxis protein {Thermoanaerob	95.1

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.5e-59  Score=368.45  Aligned_cols=161  Identities=58%  Similarity=1.011  Sum_probs=153.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcCccc
Q 029844           17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTA   96 (186)
Q Consensus        17 ~~vs~~~f~~l~~e~V~q~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld~l~fI~k~~Wk~lfgk~a   96 (186)
                      +|||+|+|+|||||||+|++++.++.++++++|++|||+||.||+|++++|++.+||++++++++||||++||++|||++
T Consensus         1 ~kv~~elfal~yg~iV~~~~~d~e~~~e~~~~Le~~G~~IG~RLiE~~~~r~~~~R~~~~l~~l~fI~~~~wk~~fgk~~   80 (161)
T d1wc9a_           1 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITP   80 (161)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSCCCHHHHHHHHHHTHHHHHHSCCC
T ss_pred             CcccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhCcchhHHHHHHHHhhcCCCccccHHHHHHHHHHHHHHHHcCCCc
Confidence            37999999999999999999999999999999999999999999999999988999999999999999999999999999


Q ss_pred             cccccCCCCCeEEEeecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEEecccc
Q 029844           97 TVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQV  176 (186)
Q Consensus        97 d~l~~t~~~~~y~L~~d~npl~~fv~lp~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~g~~~t~~~Ikf~~~~  176 (186)
                      |++++++++..|++++++||+++|+++|+++++++|++|+||||||||+++||+|+|||++|+++||+.|+|+|||.+.+
T Consensus        81 d~l~~~~~~~~~~~i~~~npl~~fv~lP~~~~~l~y~~f~cGiIrGaL~~~g~~~~V~~~~d~l~gd~~~~i~v~~~~~~  160 (161)
T d1wc9a_          81 SITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRI  160 (161)
T ss_dssp             EEECCCTTSCEEEEEESCCGGGTTCCCCTTCTTCCTTTHHHHHHHHHHHTTTEEEEEEEEECGGGTCSSEEEEEEEEEEC
T ss_pred             ccceecCCCCeEEEEecCCCccceEEcCcccCCceehhhHHHHHHHHHHHCCCeEEEEEEecccCCCCceEEEEEEeeec
Confidence            99996666667888889999999999999999999999999999999999999999999999999999999999999886


Q ss_pred             c
Q 029844          177 P  177 (186)
Q Consensus       177 ~  177 (186)
                      +
T Consensus       161 ~  161 (161)
T d1wc9a_         161 E  161 (161)
T ss_dssp             -
T ss_pred             C
Confidence            3

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

Probab=100.00  E-value=1.5e-51  Score=328.56  Aligned_cols=157  Identities=20%  Similarity=0.278  Sum_probs=139.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHhhhhHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHhhhhhhcC
Q 029844           16 VERVNAELFTLTYGATVRQLLTD-LEEVEEVNKQLDQMGYNIGIRLIDEFLAKS-NVTRCVDFRETAEVIAKVGFKMFLG   93 (186)
Q Consensus        16 ~~~vs~~~f~~l~~e~V~q~~~~-~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~-~~~R~~~~ld~l~fI~k~~Wk~lfg   93 (186)
                      +++||+|+|+|||+||| +|+.+ .++.++++++|++|||+||.||+|++++|+ ..+||++++++++||||++|+++||
T Consensus         1 k~~Vs~s~f~~L~~ElV-~y~~~~~~~~~e~~~~Le~mG~~vG~rl~E~l~~r~~~~~R~~~~~~~l~fI~k~~W~~lfg   79 (168)
T d2j3wb1           1 KTEVSVSAFALLFSEMV-QYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFG   79 (168)
T ss_dssp             CCEEEHHHHHHHHHHHH-HHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHTHHHHHHHS
T ss_pred             CchhCHHHHHHHHHHHH-HHHHhccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHHcC
Confidence            36899999999999999 55554 469999999999999999999999999987 5689999999999999999999999


Q ss_pred             cccccccc-CCCCCeEEEeecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEEe
Q 029844           94 VTATVSNW-DADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKL  172 (186)
Q Consensus        94 k~ad~l~~-t~~~~~y~L~~d~npl~~fv~lp~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~g~~~t~~~Ikf  172 (186)
                      ||+|+|++ ++|+++|+|+.+++|++.|+++|+++++++|++|+||||||||+++||+|+|+...     +++|+|+|||
T Consensus        80 k~~d~L~~~~~~~~~y~I~d~~~~~~~~vs~p~~~~~l~y~~f~~GiIrGaL~~~g~~~~Vta~~-----~~~~~f~ikf  154 (168)
T d2j3wb1          80 KEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHW-----HKGTTLMIKF  154 (168)
T ss_dssp             SCCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEE-----SSSEEEEEEE
T ss_pred             cCcccccccCCCCceEEEEcCCchhhheeccCccccccchHHHHHHHHHHHHHHCCCceEEEEee-----CCCeEEEEEc
Confidence            99999975 56789999994445578999999999999999999999999999999988665432     3689999999


Q ss_pred             cccccc
Q 029844          173 LKQVPE  178 (186)
Q Consensus       173 ~~~~~~  178 (186)
                      +++|.+
T Consensus       155 ~~~v~~  160 (168)
T d2j3wb1         155 DESVIA  160 (168)
T ss_dssp             CHHHHH
T ss_pred             cHHHHH
Confidence            999875

>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: MJ1460-like
domain: Hypothetical protein MJ1460
species: Methanococcus jannaschii [TaxId: 2190]

Probab=96.77  E-value=0.0015  Score=48.83  Aligned_cols=134  Identities=16%  Similarity=0.190  Sum_probs=83.5

Q ss_pred             hhchhhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhc
Q 029844           13 FANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFL   92 (186)
Q Consensus        13 ~~~~~~vs~~~f~~l~~e~V~q~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld~l~fI~k~~Wk~lf   92 (186)
                      ...+..|..+.|.++..+|...+..     .+...-|...||++|.++.++           ...++.+|..+..|=.+ 
T Consensus        17 ~~~~~~ip~~~f~l~~~~l~d~l~~-----~~~~~iLY~aGk~lGr~~~~k-----------~~eel~~ff~~~g~G~L-   79 (152)
T d2osoa1          17 IKESKKIPMPYFGLFALVIFDKVKE-----LGSETSLYEIGEEFGKMLSPK-----------NIEELKKIFKLMNFGDL-   79 (152)
T ss_dssp             HHHSCCCCHHHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHCCS-----------SHHHHHHHHHHHTCCEE-
T ss_pred             hHHHhcCCHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHcCCceE-
Confidence            3455668899999999887744421     112345888899999877642           35667777777666433 


Q ss_pred             CccccccccCCCCCeEEEeecCCcccccccCCCccCCCcchhhhhHHHHHHhhcC-CceEEEEEeecccCCCCceEEEEE
Q 029844           93 GVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMV-SMKTEVTWIRDVLRGDDAYELQVK  171 (186)
Q Consensus        93 gk~ad~l~~t~~~~~y~L~~d~npl~~fv~lp~~~~~l~y~~~~cGiIrGaL~~l-g~~~~v~~~~d~~~g~~~t~~~Ik  171 (186)
                        .++..+.....+...+...+.|+..-  .+   +.. -+++.+|++.|+++.+ |=++.|.=+.....|++.+.|.|+
T Consensus        80 --~I~~~~~~~~~~~~~~e~~~~~~~~g--~~---~~p-vC~~~~G~lag~~~~~~g~~~~v~E~~C~a~G~~~C~F~v~  151 (152)
T d2osoa1          80 --EIDENKILLKNPPYKIKLSNPPYQWV--SK---EEP-IHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVFEVK  151 (152)
T ss_dssp             --ECCHHHHHHSCSCEEEEEESCSCTTC--CC---SSC-CCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSEEEEEE
T ss_pred             --EEEecccccccceEEEEEccChhhhC--CC---CCC-cchhhHHHHHHHHHHHhCCceEEEEeehhhCCCCceEEEEe
Confidence              12221111122334444344444221  11   123 4578899999999875 557788888888999999999986

>d1u55a_ d.278.1.1 (A:) Methyl-accepting chemotaxis protein {Thermoanaerobacter tengcongensis [TaxId: 119072]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: H-NOX domain
domain: Methyl-accepting chemotaxis protein
species: Thermoanaerobacter tengcongensis [TaxId: 119072]

Probab=95.10  E-value=0.068  Score=40.60  Aligned_cols=119  Identities=16%  Similarity=0.131  Sum_probs=80.4

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcCcccccccc-CCCCCeEEEeecCCcccccccCC
Q 029844           46 NKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNW-DADGTCCSIILEDNPLVDFVELP  124 (186)
Q Consensus        46 ~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld~l~fI~k~~Wk~lfgk~ad~l~~-t~~~~~y~L~~d~npl~~fv~lp  124 (186)
                      ++-|+..|...=.++.+.+..--....+.+++.-+..|+..+=+.+-+-.+-..+. ..+++++.|.        |.|  
T Consensus        64 ~~ll~~fG~~~~~~~~~~y~~~~~g~~~~dFL~~ld~iH~~v~~~yp~~~~P~f~~~~~~~~~l~l~--------Y~S--  133 (188)
T d1u55a_          64 NEIWREVGRQNIKTFSEWFPSYFAGRRLVNFLMMMDEVHLQLTKMIKGATPPRLIAKPVAKDAIEME--------YVS--  133 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHSGGGTTTCCHHHHHHHHHHHHHHHHTTSTTCCCCBCCEEEEETTEEEEE--------EEE--
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhcCCCHHHHHHhhhhHHHHHHHhCCCCCCCeEEEEECCCCEEEEE--------EEe--
Confidence            35677788765556665432111234677888888899988877777766655542 1234555554        323  


Q ss_pred             CccCCCcchhhhhHHHHHHhhcCCceEEEEEee-cccCCCCceEEEEEecccccc
Q 029844          125 DTCQGLYYCNILSGVIRGALEMVSMKTEVTWIR-DVLRGDDAYELQVKLLKQVPE  178 (186)
Q Consensus       125 ~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~-d~~~g~~~t~~~Ikf~~~~~~  178 (186)
                         .. ....+..|+|+|+-+..|-++++..++ ....|.+..+|+|+|++.+-.
T Consensus       134 ---~R-~l~~~~~Gli~g~A~~f~~~i~I~~~~~~~~~~~~~~~~~i~f~n~~~~  184 (188)
T d1u55a_         134 ---KR-KMYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKVRIKFKNPVFE  184 (188)
T ss_dssp             ---TT-CCHHHHHHHHHHHHHHHTCCEEEEEEEEEEETTEEEEEEEEEESSCCCC
T ss_pred             ---CC-ChHHHHHHHHHHHHHHhCCceEEEEeeccccCCccEEEEEEEEEchhhh
Confidence               12 356899999999999988888887765 444566789999999876543