Citrus Sinensis ID: 029860

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
MQDDEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREECFGSS
cccHHHHHHHccccccccccccccccEEEEEEEEEccccccccccEEEEEEcccEEEEEEccccccccccccEEEEEEEEccccccccEEEcEEEccccEEEccccEEEEEEEcccEEEEEEccccEEEEEHHHHHccccccccccccccEEEEEEccHHHHHHHHHccccHHHHHHHHHHHHccc
cccHHHHHcccccccHcccccccccHHHHHHHHHHEHccccccccEEEEEccccEEEEEEcccccEEEccccEEEEEEEEccccccccEEcccccccccEEEcccccEEEEEccccEEEEEEcEccEEEEEcHHHHHcHHHHHccccccEEEEEEcccHHHHHHHHHccccHHHHHHHHHHHHccc
MQDDEEELHKlllpnvhdlpltppsaidfnfvayfapdflkpghdqyvyRHANGlcviglapthvafkdeggitavdfnvgksdrsgfkvtgkrkkqnaqhfesntavckvctnndsyivRCCVKGSLLEVNNRlikqpgllnssadreGYIAIIMPKPADWLKIKSSLLGLEDYKRKreecfgss
MQDDEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGItavdfnvgksdrsgfkvtgkrkkqnaqhfesntavckvctnNDSYIVRCCVKGSLLEVNNRLikqpgllnssadREGYIAIImpkpadwlKIKSsllgledykrkreecfgss
MQDDEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREECFGSS
**********LLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVG********************FESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDY***********
************LPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGK*******************FESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREECF***
MQDDEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRS***************FESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREECFGSS
****EEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREECFGSS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQDDEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREECFGSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query186 2.2.26 [Sep-21-2011]
Q6GR35183 Protein FAM206A OS=Xenopu N/A no 0.833 0.846 0.327 1e-20
Q80ZQ9193 Protein FAM206A OS=Mus mu yes no 0.822 0.792 0.324 8e-20
Q29S16187 Protein FAM206A OS=Bos ta yes no 0.860 0.855 0.319 1e-18
Q1LU93177 Protein FAM206A OS=Danio yes no 0.817 0.858 0.326 1e-18
Q5RFS0181 Protein FAM206A OS=Pongo yes no 0.817 0.839 0.320 3e-18
Q9NX38181 Protein FAM206A OS=Homo s yes no 0.817 0.839 0.320 3e-18
Q54TD9175 FAM206 family protein OS= yes no 0.682 0.725 0.376 3e-18
Q28G67183 Protein FAM206A OS=Xenopu yes no 0.817 0.830 0.301 9e-18
Q9VFR1214 FAM206 family protein CG9 yes no 0.919 0.799 0.335 4e-17
Q5ZHW7173 Protein FAM206A OS=Gallus yes no 0.779 0.838 0.302 6e-15
>sp|Q6GR35|F206A_XENLA Protein FAM206A OS=Xenopus laevis GN=fam206a PE=2 SV=1 Back     alignment and function desciption
 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 4/159 (2%)

Query: 21  LTPPSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN 79
           L  PS +D  F  ++ PD   KP  D  + +H+N +C+I LA  H   ++E  I ++ + 
Sbjct: 8   LAFPSVVDRYFTRWYKPDIKGKPCEDHCILQHSNRICIITLAECHPLLQNEKTIKSISYQ 67

Query: 80  VGKS-DRSGFKVTGKRKKQNAQHFESNTAVCKVC-TNNDSYIVRCCVKGSLLEVNNRLIK 137
           +  +  R   KV+GK K+  AQ       +C++  T+ + Y +  C++G LLEVN  +++
Sbjct: 68  ISANCSRLQNKVSGKSKR-GAQFLTELAPLCRISSTDGEEYTIYSCIRGRLLEVNENILQ 126

Query: 138 QPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 176
            PGLL      EGYIA+++PK  +   I   LL   +Y+
Sbjct: 127 NPGLLKEKPSTEGYIAVVLPKFEESKTITEGLLSQREYE 165

Xenopus laevis (taxid: 8355)
>sp|Q80ZQ9|F206A_MOUSE Protein FAM206A OS=Mus musculus GN=Fam206a PE=2 SV=2 Back     alignment and function description
>sp|Q29S16|F206A_BOVIN Protein FAM206A OS=Bos taurus GN=FAM206A PE=2 SV=1 Back     alignment and function description
>sp|Q1LU93|F206A_DANRE Protein FAM206A OS=Danio rerio GN=fam206a PE=2 SV=1 Back     alignment and function description
>sp|Q5RFS0|F206A_PONAB Protein FAM206A OS=Pongo abelii GN=FAM206A PE=2 SV=1 Back     alignment and function description
>sp|Q9NX38|F206A_HUMAN Protein FAM206A OS=Homo sapiens GN=FAM206A PE=2 SV=1 Back     alignment and function description
>sp|Q54TD9|F206_DICDI FAM206 family protein OS=Dictyostelium discoideum GN=DDB_G0281837 PE=3 SV=1 Back     alignment and function description
>sp|Q28G67|F206A_XENTR Protein FAM206A OS=Xenopus tropicalis GN=fam206a PE=2 SV=1 Back     alignment and function description
>sp|Q9VFR1|F206_DROME FAM206 family protein CG9288 OS=Drosophila melanogaster GN=CG9288 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZHW7|F206A_CHICK Protein FAM206A OS=Gallus gallus GN=FAM206A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query186
255539042282 protein with unknown function [Ricinus c 0.956 0.631 0.843 2e-87
224061971205 predicted protein [Populus trichocarpa] 0.892 0.809 0.862 2e-81
302142721 912 unnamed protein product [Vitis vinifera] 0.935 0.190 0.794 8e-81
225457867196 PREDICTED: protein FAM206A [Vitis vinife 0.935 0.887 0.794 2e-80
356517742203 PREDICTED: protein FAM206A-like isoform 0.930 0.852 0.798 1e-78
356517744217 PREDICTED: protein FAM206A-like isoform 0.935 0.801 0.748 8e-78
357467055211 hypothetical protein MTR_3g114470 [Medic 0.946 0.834 0.762 6e-77
312282739230 unnamed protein product [Thellungiella h 0.951 0.769 0.764 2e-75
449437184223 PREDICTED: protein FAM206A-like [Cucumis 0.962 0.802 0.758 2e-75
297842337224 hypothetical protein ARALYDRAFT_476748 [ 0.956 0.794 0.748 2e-74
>gi|255539042|ref|XP_002510586.1| protein with unknown function [Ricinus communis] gi|223551287|gb|EEF52773.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
 Score =  326 bits (836), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 151/179 (84%), Positives = 167/179 (93%), Gaps = 1/179 (0%)

Query: 2   QDDEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLA 61
           Q  +E+LHKLLLP+V +LP+ PPS+I+ NFV+YFAPDF+KPGHDQYVYRHANGLCVIGLA
Sbjct: 96  QVTDEDLHKLLLPDVSNLPIVPPSSIETNFVSYFAPDFMKPGHDQYVYRHANGLCVIGLA 155

Query: 62  PTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYIVR 121
           PTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKK NAQHFESNTA+CKVCT + SYIVR
Sbjct: 156 PTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKK-NAQHFESNTALCKVCTRDASYIVR 214

Query: 122 CCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKRE 180
           CCVKGSLLEVN++LIKQPGLLNSSADREGY AI+MPKP DWLKIKSSLL LE+YK+ RE
Sbjct: 215 CCVKGSLLEVNDKLIKQPGLLNSSADREGYTAIMMPKPGDWLKIKSSLLTLEEYKKLRE 273

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224061971|ref|XP_002300690.1| predicted protein [Populus trichocarpa] gi|222842416|gb|EEE79963.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302142721|emb|CBI19924.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225457867|ref|XP_002269229.1| PREDICTED: protein FAM206A [Vitis vinifera] Back     alignment and taxonomy information
>gi|356517742|ref|XP_003527545.1| PREDICTED: protein FAM206A-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356517744|ref|XP_003527546.1| PREDICTED: protein FAM206A-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|357467055|ref|XP_003603812.1| hypothetical protein MTR_3g114470 [Medicago truncatula] gi|355492860|gb|AES74063.1| hypothetical protein MTR_3g114470 [Medicago truncatula] Back     alignment and taxonomy information
>gi|312282739|dbj|BAJ34235.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|449437184|ref|XP_004136372.1| PREDICTED: protein FAM206A-like [Cucumis sativus] gi|449511231|ref|XP_004163899.1| PREDICTED: protein FAM206A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297842337|ref|XP_002889050.1| hypothetical protein ARALYDRAFT_476748 [Arabidopsis lyrata subsp. lyrata] gi|297334891|gb|EFH65309.1| hypothetical protein ARALYDRAFT_476748 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query186
TAIR|locus:2204375225 AT1G75980 "AT1G75980" [Arabido 0.956 0.791 0.745 4.9e-69
MGI|MGI:2677850193 BC026590 "cDNA sequence BC0265 0.822 0.792 0.324 1e-20
FB|FBgn0260464214 CG9288 [Drosophila melanogaste 0.924 0.803 0.337 2.7e-20
RGD|1594560193 Fam206a "family with sequence 0.817 0.787 0.320 5.7e-20
UNIPROTKB|Q29S16187 FAM206A "Protein FAM206A" [Bos 0.860 0.855 0.319 9.2e-20
UNIPROTKB|J9NY63181 FAM206A "Uncharacterized prote 0.817 0.839 0.314 2.5e-19
ZFIN|ZDB-GENE-060503-602177 fam206a "family with sequence 0.817 0.858 0.326 3.1e-19
UNIPROTKB|Q9NX38181 FAM206A "Protein FAM206A" [Hom 0.817 0.839 0.320 4e-19
UNIPROTKB|F1SP28194 FAM206A "Uncharacterized prote 0.817 0.783 0.307 5.1e-19
UNIPROTKB|F1NHU7179 FAM206A "Protein FAM206A" [Gal 0.784 0.815 0.313 3.6e-18
TAIR|locus:2204375 AT1G75980 "AT1G75980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 135/181 (74%), Positives = 153/181 (84%)

Query:     2 QDDEEE--LHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIG 59
             Q+DEEE  L KLLL ++ +LP++PPSA   NFV+YF  DF K GHDQY+YRHANGLCVIG
Sbjct:    43 QEDEEEDELRKLLLSDIGELPISPPSATQVNFVSYFITDFTKSGHDQYIYRHANGLCVIG 102

Query:    60 LAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI 119
             LAPTH+AFKDEGGIT+VDFNVGKSDRS  KV+GKRKK NA   ESNTA+CKV T  D+YI
Sbjct:   103 LAPTHIAFKDEGGITSVDFNVGKSDRSVLKVSGKRKK-NALRSESNTALCKVSTAKDTYI 161

Query:   120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKR 179
             VRCCVKGSLLEVN RLIKQP LLNS+ADREGYIAIIMP+PADW K K SL+ LE+YK K+
Sbjct:   162 VRCCVKGSLLEVNERLIKQPELLNSTADREGYIAIIMPRPADWTKNKESLITLEEYKEKK 221

Query:   180 E 180
             E
Sbjct:   222 E 222
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0005960 "glycine cleavage complex" evidence=IEA
GO:0006546 "glycine catabolic process" evidence=IEA
MGI|MGI:2677850 BC026590 "cDNA sequence BC026590" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0260464 CG9288 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1594560 Fam206a "family with sequence similarity 206, member A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q29S16 FAM206A "Protein FAM206A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9NY63 FAM206A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-602 fam206a "family with sequence similarity 206, member A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NX38 FAM206A "Protein FAM206A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SP28 FAM206A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NHU7 FAM206A "Protein FAM206A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q29S16F206A_BOVINNo assigned EC number0.31920.86020.8556yesno
Q28G67F206A_XENTRNo assigned EC number0.30120.81720.8306yesno
Q5RFS0F206A_PONABNo assigned EC number0.32050.81720.8397yesno
Q1LU93F206A_DANRENo assigned EC number0.32690.81720.8587yesno
Q9NX38F206A_HUMANNo assigned EC number0.32050.81720.8397yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query186
COG0509131 COG0509, GcvH, Glycine cleavage system H protein ( 2e-05
pfam01597122 pfam01597, GCV_H, Glycine cleavage H-protein 6e-05
TIGR00527128 TIGR00527, gcvH, glycine cleavage system H protein 1e-04
PRK01202127 PRK01202, PRK01202, glycine cleavage system protei 0.002
>gnl|CDD|223583 COG0509, GcvH, Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism] Back     alignment and domain information 
 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKR 179
           V   V G ++EVN  L+  P L+NS    EG+I  +  KPAD  +   +LL  E Y    
Sbjct: 71  VYAPVSGEVVEVNEALVDSPELINSDPYGEGWIVKL--KPADPSEELEALLDAEAYAELL 128

Query: 180 EE 181
           +E
Sbjct: 129 KE 130

Length = 131
>gnl|CDD|201881 pfam01597, GCV_H, Glycine cleavage H-protein Back     alignment and domain information
>gnl|CDD|200024 TIGR00527, gcvH, glycine cleavage system H protein Back     alignment and domain information
>gnl|CDD|234918 PRK01202, PRK01202, glycine cleavage system protein H; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 186
KOG3266172 consensus Predicted glycine cleavage system H prot 100.0
COG0509131 GcvH Glycine cleavage system H protein (lipoate-bi 99.97
PF01597122 GCV_H: Glycine cleavage H-protein; InterPro: IPR00 99.96
TIGR00527127 gcvH glycine cleavage system H protein. The genome 99.96
PRK13380144 glycine cleavage system protein H; Provisional 99.96
PRK01202127 glycine cleavage system protein H; Provisional 99.96
KOG3373172 consensus Glycine cleavage system H protein (lipoa 99.96
TIGR03077110 not_gcvH glycine cleavage protein H-like protein, 99.94
PRK00624114 glycine cleavage system protein H; Provisional 99.94
cd0684896 GCS_H Glycine cleavage H-protein. Glycine cleavage 99.89
cd0666373 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar 98.26
PRK0588971 putative acetyl-CoA carboxylase biotin carboxyl ca 96.8
PRK0822570 acetyl-CoA carboxylase biotin carboxyl carrier pro 96.69
PF0036474 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: 95.76
PRK0674883 hypothetical protein; Validated 95.56
cd0685067 biotinyl_domain The biotinyl-domain or biotin carb 95.03
PTZ00144 418 dihydrolipoamide succinyltransferase; Provisional 94.92
PRK14875 371 acetoin dehydrogenase E2 subunit dihydrolipoyllysi 94.24
PRK0705180 hypothetical protein; Validated 94.17
PRK06549130 acetyl-CoA carboxylase biotin carboxyl carrier pro 93.61
COG0511140 AccB Biotin carboxyl carrier protein [Lipid metabo 92.09
PRK06302155 acetyl-CoA carboxylase biotin carboxyl carrier pro 91.91
PRK05641153 putative acetyl-CoA carboxylase biotin carboxyl ca 91.56
TIGR00531156 BCCP acetyl-CoA carboxylase, biotin carboxyl carri 91.33
PLN02226 463 2-oxoglutarate dehydrogenase E2 component 91.12
PLN02983274 biotin carboxyl carrier protein of acetyl-CoA carb 90.98
COG0508 404 AceF Pyruvate/2-oxoglutarate dehydrogenase complex 90.56
PF09891150 DUF2118: Uncharacterized protein conserved in arch 90.47
PRK14040593 oxaloacetate decarboxylase; Provisional 89.39
PRK14042596 pyruvate carboxylase subunit B; Provisional 87.96
PRK09282592 pyruvate carboxylase subunit B; Validated 87.78
TIGR012351143 pyruv_carbox pyruvate carboxylase. This enzyme pla 87.67
TIGR01108582 oadA oxaloacetate decarboxylase alpha subunit. Thi 87.33
PRK05704 407 dihydrolipoamide succinyltransferase; Validated 86.82
TIGR027121201 urea_carbox urea carboxylase. Members of this fami 86.67
cd0684974 lipoyl_domain Lipoyl domain of the dihydrolipoyl a 83.95
TIGR01347 403 sucB 2-oxoglutarate dehydrogenase complex dihydrol 82.78
TIGR02927 590 SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo 82.54
PRK11854 633 aceF pyruvate dehydrogenase dihydrolipoyltransacet 82.39
PRK129991146 pyruvate carboxylase; Reviewed 82.39
PRK11854 633 aceF pyruvate dehydrogenase dihydrolipoyltransacet 81.59
PRK11855 547 dihydrolipoamide acetyltransferase; Reviewed 80.8
>KOG3266 consensus Predicted glycine cleavage system H protein [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2e-43  Score=280.02  Aligned_cols=166  Identities=40%  Similarity=0.695  Sum_probs=156.8

Q ss_pred             ccccCCCCCCCCccceeceeeeecccCCCCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcCCCCcccCCceeeC
Q 029860           13 LPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTG   92 (186)
Q Consensus        13 ~~~~~~~~~~~p~~~~r~~~~~y~~d~~~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~vg~~~r~~~~v~g   92 (186)
                      .++...++..+|+++||||+|||..|+....||+++.+|+|++|+|++||+|++.+..+.|.+|+|++|+.+|+.|+|||
T Consensus         2 at~~~~~~~~~pS~vdr~ftr~y~~d~kg~~~D~~i~~HsnricvI~la~~hp~l~~g~~i~sv~~~ign~dRsqnkVSG   81 (172)
T KOG3266|consen    2 ATEIGMAEPSYPSVVDRYFTRYYKEDFKGSGYDHCIYQHSNRICVITLAPSHPALQSGKTIKSVTFQIGNCDRSQNKVSG   81 (172)
T ss_pred             CccccccCCCChhhhhhhhhhhhhhhccCCCCCceEEecCCceEEEEecCCCchhhcccceeeeecccccchhhhheecc
Confidence            45666788999999999999999999876679999999999999999999999999999999999999999999999999


Q ss_pred             ccccCcceEeeeCCceEEEE-ecCCeeeEeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeCCccchhhhhccCCC
Q 029860           93 KRKKQNAQHFESNTAVCKVC-TNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLG  171 (186)
Q Consensus        93 k~K~~g~~~ve~~~~l~~v~-s~~~~~~I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~~~~~~~~~~~~Lls  171 (186)
                      |+|| ||+.+++.++||.+. +++++|.++|||+|+|+|||++|..+|+||++.|..+||+||++|.+++....++.||+
T Consensus        82 K~Kk-gAl~lq~~s~Lc~~~~a~g~~y~V~scVrG~LvEvN~rl~~~P~ll~~~pd~qGy~aI~lp~~e~~t~~~~~llt  160 (172)
T KOG3266|consen   82 KGKK-GALILQELSPLCKFKTADGSTYVVRSCVRGTLVEVNERLKTTPDLLREAPDNQGYIAILLPAIEEETEIKESLLT  160 (172)
T ss_pred             cccc-ccEeeccCCcceeEEecCCCeEEEeeeeceeEEEeehhhccCcHHHHhCCCcCcEEEEEecccccccccccccCC
Confidence            9999 999999999999995 56689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 029860          172 LEDYKRKR  179 (186)
Q Consensus       172 ~~eY~~~~  179 (186)
                      .++|++..
T Consensus       161 ~eqy~ek~  168 (172)
T KOG3266|consen  161 QEQYEEKS  168 (172)
T ss_pred             HHHHHHHH
Confidence            99998764

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism] Back     alignment and domain information
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>TIGR00527 gcvH glycine cleavage system H protein Back     alignment and domain information
>PRK13380 glycine cleavage system protein H; Provisional Back     alignment and domain information
>PRK01202 glycine cleavage system protein H; Provisional Back     alignment and domain information
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial Back     alignment and domain information
>PRK00624 glycine cleavage system protein H; Provisional Back     alignment and domain information
>cd06848 GCS_H Glycine cleavage H-protein Back     alignment and domain information
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) Back     alignment and domain information
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional Back     alignment and domain information
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid Back     alignment and domain information
>PRK06748 hypothetical protein; Validated Back     alignment and domain information
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase Back     alignment and domain information
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional Back     alignment and domain information
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional Back     alignment and domain information
>PRK07051 hypothetical protein; Validated Back     alignment and domain information
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] Back     alignment and domain information
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein Back     alignment and domain information
>PLN02226 2-oxoglutarate dehydrogenase E2 component Back     alignment and domain information
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function Back     alignment and domain information
>PRK14040 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>PRK14042 pyruvate carboxylase subunit B; Provisional Back     alignment and domain information
>PRK09282 pyruvate carboxylase subunit B; Validated Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit Back     alignment and domain information
>PRK05704 dihydrolipoamide succinyltransferase; Validated Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases Back     alignment and domain information
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) Back     alignment and domain information
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query186
1hpc_A131 Refined Structures At 2 Angstroms And 2.2 Angstroms 2e-05
>pdb|1HPC|A Chain A, Refined Structures At 2 Angstroms And 2.2 Angstroms Of The Two Forms Of The H-Protein, A Lipoamide-Containing Protein Of The Glycine Decarboxylase Length = 131 Back     alignment and structure 
Iteration: 1

 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 61  APTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNT--AVCKVCTNNDSY 118
           AP+H   K EG +  +       D  G  V  +  +      +     AV  V   +D  
Sbjct: 10  APSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSD-- 67
Query: 119 IVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRK 178
            V   + G ++EVN  L  +PGL+NSS   +G++  I P   D L+   SLLG ++Y + 
Sbjct: 68  -VNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELE---SLLGAKEYTKF 123
Query: 179 REE 181
            EE
Sbjct: 124 CEE 126

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query186
3hgb_A155 Glycine cleavage system H protein; ssgcid, niaid, 2e-04
3tzu_A137 GCVH, glycine cleavage system H protein 1; ssgcid, 5e-04
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A Length = 155 Back     alignment and structure
 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 124 VKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKS---SLLGLEDYKRKRE 180
           + G + EVN+ L   P L+NS     G++  I    +D   ++S   +LL  E Y+    
Sbjct: 95  ISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLDAEAYRGTLT 154

Query: 181 E 181
           E
Sbjct: 155 E 155
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum} Length = 137 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query186
3klr_A125 Glycine cleavage system H protein; antiparallel be 100.0
3hgb_A155 Glycine cleavage system H protein; ssgcid, niaid, 99.98
3tzu_A137 GCVH, glycine cleavage system H protein 1; ssgcid, 99.97
3mxu_A143 Glycine cleavage system H protein; seattle structu 99.97
3a7l_A128 H-protein, glycine cleavage system H protein; lipo 99.97
1onl_A128 Glycine cleavage system H protein; hybrid barrel-s 99.96
1hpc_A131 H protein of the glycine cleavage system; transit 99.96
1zko_A136 Glycine cleavage system H protein; TM0212, structu 99.95
2kcc_A84 Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, 96.37
1z6h_A72 Biotin/lipoyl attachment protein; solution structu 96.25
1gjx_A81 Pyruvate dehydrogenase; oxidoreductase, lipoyl dom 96.22
1qjo_A80 Dihydrolipoamide acetyltransferase; lipoyl domain, 96.22
2l5t_A77 Lipoamide acyltransferase; E2 lipoyl domain; NMR { 96.14
1k8m_A93 E2 component of branched-chain ahpha-ketoacid dehy 95.93
3crk_C87 Dihydrolipoyllysine-residue acetyltransferase COM 95.9
1dcz_A77 Transcarboxylase 1.3S subunit; antiparallel beta s 95.74
1ghj_A79 E2, E2, the dihydrolipoamide succinyltransferase c 95.73
1bdo_A80 Acetyl-COA carboxylase; BCCPSC, carboxyl transfera 95.67
2d5d_A74 Methylmalonyl-COA decarboxylase gamma chain; bioti 95.62
1iyu_A79 E2P, dihydrolipoamide acetyltransferase component 95.62
2dnc_A98 Pyruvate dehydrogenase protein X component; lipoic 95.11
2jku_A94 Propionyl-COA carboxylase alpha chain, mitochondri 94.99
1y8o_B128 Dihydrolipoyllysine-residue acetyltransferase COM 94.66
2ejm_A99 Methylcrotonoyl-COA carboxylase subunit alpha; bio 94.46
2dne_A108 Dihydrolipoyllysine-residue acetyltransferase comp 94.41
2k7v_A85 Dihydrolipoyllysine-residue acetyltransferase comp 94.07
1pmr_A80 Dihydrolipoyl succinyltransferase; 2-oxoglutarate 92.78
2dn8_A100 Acetyl-COA carboxylase 2; biotin required enzyme, 92.15
3d4r_A169 Domain of unknown function from the PFAM-B_34464; 90.54
2k32_A116 A; NMR {Campylobacter jejuni} PDB: 2k33_A* 88.76
3n6r_A681 Propionyl-COA carboxylase, alpha subunit; protein 88.75
3va7_A1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 85.56
1zy8_K 229 Pyruvate dehydrogenase protein X component, mitoch 84.84
3hbl_A1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 84.69
3dva_I 428 Dihydrolipoyllysine-residue acetyltransferase comp 82.58
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A Back     alignment and structure
Probab=100.00  E-value=1e-32  Score=213.02  Aligned_cols=114  Identities=19%  Similarity=0.374  Sum_probs=103.3

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeee
Q 029860           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI  119 (186)
Q Consensus        41 ~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~  119 (186)
                      +++|+|+...  +++++|||  |+|||+++|+|+||+|| +|.                  .++.|+++|+|++.+...+
T Consensus         6 t~~HeWv~~e--~~~~~vGI--Td~Aq~~lGdiv~velp~vG~------------------~v~~G~~~~~VES~K~~sd   63 (125)
T 3klr_A            6 TEKHEWVTTE--NGVGTVGI--SNFAQEALGDVVYCSLPEVGT------------------KLNKQEEFGALESVKAASE   63 (125)
T ss_dssp             CTTSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECCCTTC------------------EECTTCEEEEEEESSCEEE
T ss_pred             CCCCEEEEEc--CCEEEEee--CHHHHhhCCCeEEEEeCCCCC------------------EEcCCCEEEEEEEcceeee
Confidence            5799998765  45999999  99999999999999999 765                  4789999999999999999


Q ss_pred             EeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeC-CccchhhhhccCCCHHHHHHHHh
Q 029860          120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADWLKIKSSLLGLEDYKRKRE  180 (186)
Q Consensus       120 I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~-~~~~~~~~~~~Lls~~eY~~~~~  180 (186)
                      |+|||+|+|++||++|.++|+|||++||++|||+.+.+ +++++    +.||++++|.++++
T Consensus        64 i~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~~~~~e~----~~Ll~~~~Y~~~~~  121 (125)
T 3klr_A           64 LYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSNPSEL----DELMSEEAYEKYIK  121 (125)
T ss_dssp             EECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEESCGGGG----GGSBCHHHHHHHHH
T ss_pred             eecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEECCHHHH----HhcCCHHHHHHHHh
Confidence            99999999999999999999999999999999995554 56666    88999999999875
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A Back     alignment and structure
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum} Back     alignment and structure
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae} Back     alignment and structure
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E* Back     alignment and structure
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1 Back     alignment and structure
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A* Back     alignment and structure
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A Back     alignment and structure
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Back     alignment and structure
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Back     alignment and structure
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Back     alignment and structure
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Back     alignment and structure
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Back     alignment and structure
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Back     alignment and structure
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Back     alignment and structure
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Back     alignment and structure
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Back     alignment and structure
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Back     alignment and structure
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Back     alignment and structure
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Back     alignment and structure
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Back     alignment and structure
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Back     alignment and structure
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Back     alignment and structure
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis} Back     alignment and structure
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 186
d1hpca_131 b.84.1.1 (A:) Protein H of glycine cleavage system 2e-15
d1onla_127 b.84.1.1 (A:) Protein H of glycine cleavage system 1e-09
>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]} Length = 131 Back     information, alignment and structure

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

 Score = 67.3 bits (164), Expect = 2e-15
 Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 61  APTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYIV 120
           AP+H   K EG +  +       D  G  V  +  +              V +   +  V
Sbjct: 10  APSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPG-VSVTKGKGFGAVESVKATSDV 68

Query: 121 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKRE 180
              + G ++EVN  L  +PGL+NSS   +G++  I P   D L+   SLLG ++Y +  E
Sbjct: 69  NSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELE---SLLGAKEYTKFCE 125

Query: 181 E 181
           E
Sbjct: 126 E 126
>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]} Length = 127 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query186
d1hpca_131 Protein H of glycine cleavage system {Pea (Pisum s 99.97
d1onla_127 Protein H of glycine cleavage system {Thermus ther 99.97
d1k8ma_87 Lipoyl domain of the mitochondrial branched-chain 96.9
d1dcza_77 Biotin carboxyl carrier domain of transcarboxylase 96.63
d1ghja_79 Lipoyl domain of the 2-oxoglutarate dehydrogenase 96.21
d1iyua_79 Lipoyl domain of dihydrolipoamide acetyltransferas 96.12
d1qjoa_80 Lipoyl domain of dihydrolipoamide acetyltransferas 95.92
d1laba_80 Lipoyl domain of dihydrolipoamide acetyltransferas 95.7
d1bdoa_80 Biotinyl domain of acetyl-CoA carboxylase {Escheri 95.62
d1y8ob1102 Lipoyl domain of dihydrolipoamide acetyltransferas 95.17
d1gjxa_81 Lipoyl domain of dihydrolipoamide acetyltransferas 94.7
d1pmra_80 Lipoyl domain of the 2-oxoglutarate dehydrogenase 93.45
>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=99.97  E-value=2.2e-30  Score=199.41  Aligned_cols=115  Identities=29%  Similarity=0.456  Sum_probs=103.5

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeee
Q 029860           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI  119 (186)
Q Consensus        41 ~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~  119 (186)
                      +++|.|+...  +++++|||  |++||+++|+|++|+|| +|+                  .++.|+.+++|++.++++.
T Consensus        10 t~~H~Wv~~e--~~~~~vGi--t~~a~~~lG~i~~v~lp~~g~------------------~v~~g~~~~~iEs~k~~~~   67 (131)
T d1hpca_          10 APSHEWVKHE--GSVATIGI--TDHAQDHLGEVVFVELPEPGV------------------SVTKGKGFGAVESVKATSD   67 (131)
T ss_dssp             CTTSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECCCTTC------------------EECBTSEEEEEEESSCEEE
T ss_pred             CCCeEEEEec--CCEEEEEE--CHHHHhhhhhheeecCCCCCc------------------cccCCCceEEEEeeccccc
Confidence            6789998643  67999999  99999999999999999 654                  4889999999999999999


Q ss_pred             EeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeC-CccchhhhhccCCCHHHHHHHHhh
Q 029860          120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADWLKIKSSLLGLEDYKRKREE  181 (186)
Q Consensus       120 I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~-~~~~~~~~~~~Lls~~eY~~~~~~  181 (186)
                      |+|||+|+|+++|++|.++|+|||++||++|||+.+.+ +++++    +.||+.++|.++.+.
T Consensus        68 i~sPv~G~vv~vN~~l~~~P~llN~dpy~~gWl~~i~~~d~~~~----~~Ll~~~~Y~~~~~e  126 (131)
T d1hpca_          68 VNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDEL----ESLLGAKEYTKFCEE  126 (131)
T ss_dssp             EEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESSGGGG----GGSBCHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhhCHHHHhCCCCCCcEEEEEEECCHHHH----HhCCCHHHHHHHHhh
Confidence            99999999999999999999999999999999996665 45555    789999999998764
>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Back     information, alignment and structure