Citrus Sinensis ID: 029879

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MNAFTFYFQCGAVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINATANAD
Secondary Structure (PSIPRED)
ccHHHHHHHHccccEEEEcccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEcccccHHHHHHHHHHHHccccccccEEEEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccEEEEcccccccccHHHHHHHHcccccccccccccccHHHcccccccccccccccccccEEEEEccccEEEEEEcccccHHHHHHHHHHHHHHcccccHcEEEEEEEccccEEEEEEEccccccccHHHHHHHHHHHHHHccccEcccEEEcccHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mnaftfyfqcgavpvflyaaahptgkpldTIRRElgyyrpnsmgnqwagwtmpeilperpnegpiqvspargiamigarpwvalynipimstDVAATRRIARMVSarggglptvqtlglvhgedsTEIACMllepnqvgadRVQNRVEKLAAEegldvekgyftdfspEMIVEKYMNLINATANAD
Flexible Loop (DISEMBL)
MNAFTFYFQCGAVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVsarggglptvQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLaaeegldvekgyfTDFSPEMIVEKYMNLINATANAD
Low Complexity Region (SEG)
MNAFTFYFQCGAVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINATANAD
Disordered region (IsUnstruct)
**AFTFYFQCGAVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEIL********IQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLIN******
Disordered Region (DISOPRED)
****TFYFQCGAVPVFLYAAAHPTGKPLDTIRRELGYYRPNS*******WTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINAT****
Disordered Region (DISEMBL)
MNAFTFYFQCGAVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINATANAD
Disordered Region (DISPRO)
MNAFTFYFQCGAVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNAFTFYFQCGAVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINATANAD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
255553875	300	formiminotransferase-cyclodeaminase, put	0.924	0.573	0.872	7e-85
297739270	345	unnamed protein product [Vitis vinifera]	0.903	0.486	0.815	2e-79
225447252	317	PREDICTED: formimidoyltransferase-cyclod	0.903	0.529	0.815	2e-79
363807050	318	uncharacterized protein LOC100784302 [Gl	0.908	0.531	0.788	4e-74
224126753	300	predicted protein [Populus trichocarpa]	0.908	0.563	0.775	1e-73
449444392	324	PREDICTED: formimidoyltransferase-cyclod	0.913	0.524	0.752	5e-73
224127011	300	predicted protein [Populus trichocarpa]	0.908	0.563	0.781	6e-73
388490910	143	unknown [Medicago truncatula]	0.763	0.993	0.811	2e-61
125544634	318	hypothetical protein OsI_12376 [Oryza sa	0.892	0.522	0.598	9e-56
115453915	318	Os03g0582000 [Oryza sativa Japonica Grou	0.892	0.522	0.598	1e-55

>gi|255553875|ref|XP_002517978.1| formiminotransferase-cyclodeaminase, putative [Ricinus communis] gi|223542960|gb|EEF44496.1| formiminotransferase-cyclodeaminase, putative [Ricinus communis]

 Score =  318 bits (814), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 150/172 (87%), Positives = 161/172 (93%)

Query: 13  VPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARG 72
           VPVFLYAAAH TGK LDTIRRELGYYRPN MGNQWAGWTMP+IL E+P+EGP QVS ARG
Sbjct: 129 VPVFLYAAAHSTGKALDTIRRELGYYRPNFMGNQWAGWTMPDILLEKPDEGPQQVSRARG 188

Query: 73  IAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACML 132
           I MIGARPWVALYN+PIMSTDV+ATR+IARMVSARGGGLPTVQTLGLVHGEDSTEIACML
Sbjct: 189 ITMIGARPWVALYNVPIMSTDVSATRQIARMVSARGGGLPTVQTLGLVHGEDSTEIACML 248

Query: 133 LEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINATAN 184
           LEPNQ+GADRVQ RVE LAA+EGLD EKGYFTDFSPEMIVEKYMNLI+A+ +
Sbjct: 249 LEPNQIGADRVQTRVEMLAAQEGLDAEKGYFTDFSPEMIVEKYMNLISASRD 300

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739270|emb|CBI28921.3| unnamed protein product [Vitis vinifera]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 137/168 (81%), Positives = 153/168 (91%)

Query: 13  VPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARG 72
           VPVFLY AAHP GKPLD IRRELGYYRPN MGNQW+GW MPE+L E+P+EGP  VS ARG
Sbjct: 173 VPVFLYDAAHPMGKPLDIIRRELGYYRPNFMGNQWSGWDMPEVLSEKPDEGPTMVSRARG 232

Query: 73  IAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACML 132
           I MIGARPWV++YNIPI+STD++A RRIAR VSARGGGLPTVQTLGL HGEDSTEIACML
Sbjct: 233 IVMIGARPWVSMYNIPIVSTDISAARRIARTVSARGGGLPTVQTLGLFHGEDSTEIACML 292

Query: 133 LEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLIN 180
           LEPN++GADRVQN+VE LAA+EGLDVEKGYFTDFSPEMI+EKY+ LI+
Sbjct: 293 LEPNRIGADRVQNQVEMLAAQEGLDVEKGYFTDFSPEMIIEKYLKLIS 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447252|ref|XP_002278962.1| PREDICTED: formimidoyltransferase-cyclodeaminase-like [Vitis vinifera]

 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 137/168 (81%), Positives = 153/168 (91%)

Query: 13  VPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARG 72
           VPVFLY AAHP GKPLD IRRELGYYRPN MGNQW+GW MPE+L E+P+EGP  VS ARG
Sbjct: 145 VPVFLYDAAHPMGKPLDIIRRELGYYRPNFMGNQWSGWDMPEVLSEKPDEGPTMVSRARG 204

Query: 73  IAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACML 132
           I MIGARPWV++YNIPI+STD++A RRIAR VSARGGGLPTVQTLGL HGEDSTEIACML
Sbjct: 205 IVMIGARPWVSMYNIPIVSTDISAARRIARTVSARGGGLPTVQTLGLFHGEDSTEIACML 264

Query: 133 LEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLIN 180
           LEPN++GADRVQN+VE LAA+EGLDVEKGYFTDFSPEMI+EKY+ LI+
Sbjct: 265 LEPNRIGADRVQNQVEMLAAQEGLDVEKGYFTDFSPEMIIEKYLKLIS 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807050|ref|NP_001242582.1| uncharacterized protein LOC100784302 [Glycine max] gi|255640979|gb|ACU20769.1| unknown [Glycine max]

 Score =  282 bits (722), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 134/170 (78%), Positives = 147/170 (86%), Gaps = 1/170 (0%)

Query: 12  AVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPAR 71
           +VPVFLYAAAHPTGK LD IRRELGYYRPNS G+QWAGW MPE LP  P+EGP  VS A+
Sbjct: 146 SVPVFLYAAAHPTGKELDAIRRELGYYRPNSRGSQWAGWAMPETLPLSPDEGPNVVSRAK 205

Query: 72  GIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACM 131
           GI MIGARPWV LYN+PI+ TDV+  RRIAR VSARGGGLPTVQT+ LVH EDSTEIACM
Sbjct: 206 GITMIGARPWVTLYNVPILCTDVSVARRIARKVSARGGGLPTVQTIALVH-EDSTEIACM 264

Query: 132 LLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINA 181
           LL+  QVGADRVQNRVE LAA+EGLD+E+GYFTD SPEMIVEKYM LIN+
Sbjct: 265 LLDSKQVGADRVQNRVEMLAAQEGLDIEQGYFTDISPEMIVEKYMKLINS 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126753|ref|XP_002319918.1| predicted protein [Populus trichocarpa] gi|222858294|gb|EEE95841.1| predicted protein [Populus trichocarpa]

 Score =  280 bits (717), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/169 (77%), Positives = 146/169 (86%)

Query: 13  VPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARG 72
           VPVFLYAAAHPTG+  DTIRRELGYYRPN MG+QWAGW +PEILPE P+ GP  VS  RG
Sbjct: 129 VPVFLYAAAHPTGRAPDTIRRELGYYRPNFMGSQWAGWNIPEILPENPDHGPNHVSRTRG 188

Query: 73  IAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACML 132
           + +IGAR WV LYNIPIM TDV+  RRIARMVSARGGGLPTVQ+L L HG+DS EIACML
Sbjct: 189 VTLIGARSWVTLYNIPIMCTDVSTARRIARMVSARGGGLPTVQSLALFHGDDSAEIACML 248

Query: 133 LEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINA 181
           LEPN++G DRVQ +VE LAA+EGLDVEKGYFTD SPEMIV+KYMNLI+A
Sbjct: 249 LEPNRIGPDRVQAQVEMLAAQEGLDVEKGYFTDLSPEMIVQKYMNLISA 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444392|ref|XP_004139959.1| PREDICTED: formimidoyltransferase-cyclodeaminase-like [Cucumis sativus] gi|449475735|ref|XP_004154537.1| PREDICTED: formimidoyltransferase-cyclodeaminase-like [Cucumis sativus]

 Score =  279 bits (713), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 128/170 (75%), Positives = 149/170 (87%)

Query: 13  VPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARG 72
           VPVFLY+AAHP+GK  D +RRELGY+RPN  GNQWAGW+MPE LPE P+EGP  VS  RG
Sbjct: 146 VPVFLYSAAHPSGKAPDDLRRELGYFRPNYKGNQWAGWSMPETLPENPDEGPNTVSRERG 205

Query: 73  IAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACML 132
           I MIGARPW A+YNIPI+STDV+ATRRIARMVS RGGGLPTVQT+GL+H +++TEIAC+L
Sbjct: 206 ITMIGARPWTAMYNIPILSTDVSATRRIARMVSGRGGGLPTVQTIGLLHDDETTEIACVL 265

Query: 133 LEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINAT 182
           LEPNQVGADRVQ  VE +AA+ GL+VE GYFTD+SPEMIVEKY+NLI+ T
Sbjct: 266 LEPNQVGADRVQRHVEIVAAQFGLEVENGYFTDYSPEMIVEKYLNLISGT 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127011|ref|XP_002329361.1| predicted protein [Populus trichocarpa] gi|222870411|gb|EEF07542.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (712), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 132/169 (78%), Positives = 146/169 (86%)

Query: 13  VPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARG 72
           VPVFLYAAAHPTG+  DTIRRELGYY PN MGNQWAGWT+PEILP  P+EGP  VS  RG
Sbjct: 129 VPVFLYAAAHPTGRAPDTIRRELGYYTPNFMGNQWAGWTIPEILPGAPDEGPTHVSRTRG 188

Query: 73  IAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACML 132
           I MIGARPWVALYNIP++ TDV+  R+IARMV AR GGLPTVQ L LVHG+DS EIAC+L
Sbjct: 189 IVMIGARPWVALYNIPVVCTDVSTARQIARMVRARDGGLPTVQALALVHGDDSFEIACIL 248

Query: 133 LEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLINA 181
           LEPNQVGA+RVQ  VE LAA+EGL+VEKGYFTDF PEMIVEKYMNLI++
Sbjct: 249 LEPNQVGAERVQAEVEMLAAQEGLEVEKGYFTDFPPEMIVEKYMNLISS 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490910|gb|AFK33521.1| unknown [Medicago truncatula]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/143 (81%), Positives = 130/143 (90%), Gaps = 1/143 (0%)

Query: 43  MGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIAR 102
           MGNQWAGWTMP+ILP+ P+EGPI VS A+GI+MIGARPWV LYNIPI+STDV+A RRIAR
Sbjct: 1   MGNQWAGWTMPDILPQTPDEGPIVVSRAKGISMIGARPWVGLYNIPILSTDVSAARRIAR 60

Query: 103 MVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGY 162
            VSARGGGLPTVQTLG+V  EDS EIACMLLEPNQ+GADRVQN VE LAA+EGLDVEKGY
Sbjct: 61  KVSARGGGLPTVQTLGVVC-EDSAEIACMLLEPNQIGADRVQNLVEMLAAQEGLDVEKGY 119

Query: 163 FTDFSPEMIVEKYMNLINATANA 185
           FTDFSPEMIVE+YMNLI+A  ++
Sbjct: 120 FTDFSPEMIVERYMNLISAKKSS 142

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125544634|gb|EAY90773.1| hypothetical protein OsI_12376 [Oryza sativa Indica Group]

 Score =  221 bits (564), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 100/167 (59%), Positives = 127/167 (76%), Gaps = 1/167 (0%)

Query: 13  VPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARG 72
           VPVFLY AAHPTGKP+  +RRELGY++PN MG QW G  +P+ILP +P+EGP  VS  RG
Sbjct: 149 VPVFLYGAAHPTGKPVTAVRRELGYFQPNYMGIQWMGQVLPDILPVKPDEGPDHVSRERG 208

Query: 73  IAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACML 132
             MIGA P    YN+P++S D+   RRI R V+ RGGGLPTVQ L L HG+D TEIAC  
Sbjct: 209 AIMIGAAPLPLSYNVPVLSKDIPTIRRITRRVTGRGGGLPTVQALALSHGDDCTEIAC-F 267

Query: 133 LEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLI 179
           L+P+ V AD+VQ +VE++AAE+GL+VEKGYFTDFS + ++EKY  ++
Sbjct: 268 LDPDHVSADQVQQQVEQIAAEQGLEVEKGYFTDFSKDAMLEKYFKIV 314

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115453915|ref|NP_001050558.1| Os03g0582000 [Oryza sativa Japonica Group] gi|41469312|gb|AAS07168.1| expressed protein [Oryza sativa Japonica Group] gi|108709512|gb|ABF97307.1| formiminotransferase-cyclodeaminase, putative, expressed [Oryza sativa Japonica Group] gi|113549029|dbj|BAF12472.1| Os03g0582000 [Oryza sativa Japonica Group] gi|125586936|gb|EAZ27600.1| hypothetical protein OsJ_11547 [Oryza sativa Japonica Group]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/167 (59%), Positives = 127/167 (76%), Gaps = 1/167 (0%)

Query: 13  VPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARG 72
           VPVFLY AAHPTGKP+  +RRELGY++PN MG QW G  +P+ILP +P+EGP  VS  RG
Sbjct: 149 VPVFLYGAAHPTGKPVTAVRRELGYFQPNYMGIQWMGQVLPDILPVKPDEGPDHVSRERG 208

Query: 73  IAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACML 132
             MIGA P    YN+P++S D+   RRI R V+ RGGGLPTVQ L L HG+D TEIAC  
Sbjct: 209 AIMIGAAPLPLNYNVPVLSKDIPTIRRITRRVTGRGGGLPTVQALALSHGDDCTEIAC-F 267

Query: 133 LEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLI 179
           L+P+ V AD+VQ +VE++AAE+GL+VEKGYFTDFS + ++EKY  ++
Sbjct: 268 LDPDHVSADQVQQQVEQIAAEQGLEVEKGYFTDFSKDAMLEKYFKIV 314

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
TAIR|locus:2051415	431	AT2G20830 [Arabidopsis thalian	0.903	0.389	0.535	3.8e-46
ZFIN|ZDB-GENE-060929-820	328	zgc:153901 "zgc:153901" [Danio	0.618	0.350	0.292	0.00056

TAIR|locus:2051415 AT2G20830 [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 90/168 (53%), Positives = 122/168 (72%)

Query:    13 VPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARG 72
             VP +LY AA      LD+IRR+LGY++ N  G++WAG    E++P +P+ GP +VS A+G
Sbjct:   262 VPTYLYGAAEKEQCTLDSIRRKLGYFKANREGHEWAGGFDLEMVPLKPDAGPQEVSKAKG 321

Query:    73 IAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACML 132
             +  +GA  WV+ YN+P+MS D+ A RRIAR  S RGGGL +VQT+ LVHGE   E+AC L
Sbjct:   322 VVAVGACGWVSNYNVPVMSNDLKAVRRIARKTSERGGGLASVQTMALVHGEGVIEVACNL 381

Query:   133 LEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEKYMNLIN 180
             L P+QVG D VQ  +E+L  EEGL V KGY+TD++P+ IVE+YM+L+N
Sbjct:   382 LNPSQVGGDEVQGLIERLGREEGLLVGKGYYTDYTPDQIVERYMDLLN 429

GO:0005542 "folic acid binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016740 "transferase activity" evidence=IEA

ZFIN|ZDB-GENE-060929-820 zgc:153901 "zgc:153901" [Danio rerio (taxid:7955)]

 Score = 108 (43.1 bits), Expect = 0.00056, P = 0.00056
 Identities = 38/130 (29%), Positives = 61/130 (46%)

Query:     3 AFTFYFQCGAVPVFLYA-AAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPN 61
             A T   +      FL+  A  P  + L   R+E+G++R            +  +   +P+
Sbjct:   125 ALTLAERVAGTSAFLFGWADSPQHRGLAQRRKEIGWFRK-----------VLNVSNIKPD 173

Query:    62 EGPIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMV-SARGGGLPTVQTLGLV 120
              G  Q +   GI  +GA P+V   N+ I + D+A  R +A  +  +  GG+P VQ + L 
Sbjct:   174 IGS-QPTRRYGITGVGASPYVMNCNVTIDTQDLALGRSVASAIRESSPGGIPGVQVMALP 232

Query:   121 HGEDSTEIAC 130
             H E + EIAC
Sbjct:   233 H-EGAVEIAC 241


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      186       186   0.00083  110 3  11 22  0.44    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  597 (63 KB)
  Total size of DFA:  160 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.46u 0.11s 17.57t   Elapsed:  00:00:01
  Total cpu time:  17.46u 0.11s 17.57t   Elapsed:  00:00:01
  Start:  Tue May 21 01:18:17 2013   End:  Tue May 21 01:18:18 2013

GO:0016740 "transferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
pfam07837	178	pfam07837, FTCD_N, Formiminotransferase domain, N-	6e-11
COG3643	302	COG3643, COG3643, Glutamate formiminotransferase [	1e-09
TIGR02024	298	TIGR02024, FtcD, glutamate formiminotransferase	6e-09

>gnl|CDD|191867 pfam07837, FTCD_N, Formiminotransferase domain, N-terminal subdomain

 Score = 58.0 bits (141), Expect = 6e-11
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 14/71 (19%)

Query: 13  VPVFLY--AAAHPTGKPLDTIRR-ELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSP 69
           VPV+LY  AA  P  + L  IR+ E    +      +W            P+ GP +  P
Sbjct: 119 VPVYLYEEAATRPERRNLAAIRKGEYEGLKEKIKDPEWK-----------PDFGPAEFHP 167

Query: 70  ARGIAMIGARP 80
             G   +GAR 
Sbjct: 168 TAGATAVGARM 178

The formiminotransferase (FT) domain of formiminotransferase- cyclodeaminase (FTCD) forms a homodimer, and each protomer comprises two subdomains. The N-terminal subdomain is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains. Length = 178

>gnl|CDD|226169 COG3643, COG3643, Glutamate formiminotransferase [Amino acid transport and metabolism]

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 18/112 (16%)

Query: 13  VPVFLY--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPE---RPNEGPIQV 67
           +PV+LY  AA  P  + L  IR+            Q+ G  + E + E    P+ GP +V
Sbjct: 121 IPVYLYEDAATRPERQNLADIRK-----------GQYEG--LKEKIKEPKWAPDFGPREV 167

Query: 68  SPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGL 119
            P  G+  IGAR  +  +N+ + ++++   ++IA+ +    GGL  V+ + +
Sbjct: 168 HPTAGVTAIGARMPLIAFNVNLDTSNMEIGKKIAKAIRFSSGGLRFVKAIAV 219

Length = 302

>gnl|CDD|131079 TIGR02024, FtcD, glutamate formiminotransferase

 Score = 53.6 bits (129), Expect = 6e-09
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 26/116 (22%)

Query: 13  VPVFLY--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPER-------PNEG 63
           VPV+LY  AA  P  + L  IR+  G Y               E L E+       P+ G
Sbjct: 121 VPVYLYEEAATRPERQTLAAIRK--GQY---------------EALFEKIKDPKWKPDFG 163

Query: 64  PIQVSPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGL 119
           P + +P  G    GAR ++  +N+ + ++++   ++IA+ +  +GGGL  V+ +GL
Sbjct: 164 PSEFNPKAGATATGARKFLIAFNVNLGTSNLEIAKKIAKAIRFQGGGLRFVKAIGL 219

This model represents the tetrahydrofolate (THF) dependent glutamate formiminotransferase involved in the histidine utilization pathway. This enzyme interconverts L-glutamate and N-formimino-L-glutamate. The enzyme is bifunctional as it also catalyzes the cyclodeaminase reaction on N-formimino-THF, converting it to 5,10-methenyl-THF and releasing ammonia - part of the process of regenerating THF. This model covers enzymes from metazoa as well as gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype. The crystal structure of the enzyme has been studied in the context of the catalytic mechanism [Energy metabolism, Amino acids and amines]. Length = 298

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
TIGR02024	298	FtcD glutamate formiminotransferase. This model co	100.0
COG3643	302	Glutamate formiminotransferase [Amino acid transpo	100.0
PF02971	145	FTCD: Formiminotransferase domain; InterPro: IPR01	100.0
PF07837	178	FTCD_N: Formiminotransferase domain, N-terminal su	99.88

>TIGR02024 FtcD glutamate formiminotransferase

Probab=100.00  E-value=1.5e-64  Score=444.66  Aligned_cols=162  Identities=23%  Similarity=0.382  Sum_probs=154.3

Q ss_pred             hhhhhcCCcEEEeecc--CCCCCChHHHhhhcCccccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCeEEeccCCCeE
Q 029879            6 FYFQCGAVPVFLYAAA--HPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVA   83 (186)
Q Consensus         6 ~~~~~l~vPVyLYg~A--~p~rr~La~iRr~lG~fe~~~~~~~~~g~~~~~~~~~~PD~GP~~~~p~~Gat~VGAr~~Li   83 (186)
                      .++++|+|||||||++  +|+|++|++|||  |||||++++        ++.++|+|||||+++||++|+|+||||+|||
T Consensus       114 ~i~~~l~VPVyLY~~aA~~p~r~~La~IRr--Gq~eg~~e~--------~~~~~~~PD~Gp~~~~p~~Gat~vGAr~~li  183 (298)
T TIGR02024       114 RLGEELGVPVYLYEEAATRPERQTLAAIRK--GQYEALFEK--------IKDPKWKPDFGPSEFNPKAGATATGARKFLI  183 (298)
T ss_pred             HHHHhhCCCEEEehhhccCCCCCCHHHHhh--hhhccchhh--------ccCCCCCCCCCCCCCCCCCCeEEEecCCceE
Confidence            4788999999999755  899999999999  799999985        5678999999999999999999999999999


Q ss_pred             EeeeeecCCCHHHHHHHHHHhccCCCCCCcceEEeeeec-CCeEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCccccee
Q 029879           84 LYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHG-EDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGY  162 (186)
Q Consensus        84 ayNV~L~t~dl~~Ar~IA~~IR~~~GGL~~VqAmgl~~~-~g~vqVS~Nl~d~~~tp~~~V~e~V~~~A~~~Gv~V~~~y  162 (186)
                      ||||||+|+|+++||+||++||+++|||++||||||+|+ +|++||||||+||++||+|+|||+|+++|+++|++|++||
T Consensus       184 ayNV~L~t~d~~~a~~IAk~vR~~gGGL~~VqAmgl~~~~~~~vqVsmNl~d~~~t~~~~v~e~v~~~A~~~Gv~V~gse  263 (298)
T TIGR02024       184 AFNVNLGTSNLEIAKKIAKAIRFQGGGLRFVKAIGLYLEEKNLVQVSMNLTNYEKTPLYRVFELIKMEAQRYGVPVVGSE  263 (298)
T ss_pred             EEEEeecCCCHHHHHHHHHHhhhcCCCccceEEeeEeecCCCeEEEEeeccCCccCCHHHHHHHHHHHHHHhCCCccccE
Confidence            999999999999999999999999999999999999995 8999999999999999999999999999999999999999


Q ss_pred             ecCCChHHHH----HHHHH
Q 029879          163 FTDFSPEMIV----EKYMN  177 (186)
Q Consensus       163 l~gf~p~~il----e~~~~  177 (186)
                      ++||+|+++|    |.+|+
T Consensus       264 ~vGl~P~~al~~~~~~yl~  282 (298)
T TIGR02024       264 LVGLVPLKALLDVAAYYLR  282 (298)
T ss_pred             EecCcHHHHHHHHHHHHhc
Confidence            9999999988    77775

This model covers enzymes from metazoa as well as gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype. The crystal structure of the enzyme has been studied in the context of the catalytic mechanism.

>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=7.7e-61  Score=412.43  Aligned_cols=157  Identities=22%  Similarity=0.347  Sum_probs=151.7

Q ss_pred             hhhhhcCCcEEEeecc--CCCCCChHHHhhhcCccccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCeEEeccCCCeE
Q 029879            6 FYFQCGAVPVFLYAAA--HPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVA   83 (186)
Q Consensus         6 ~~~~~l~vPVyLYg~A--~p~rr~La~iRr~lG~fe~~~~~~~~~g~~~~~~~~~~PD~GP~~~~p~~Gat~VGAr~~Li   83 (186)
                      .++++||||||||++|  +|+|++|++|||  ||||+++++        +.++.|+|||||+++||++|+|+||||.|||
T Consensus       114 rvgeelgiPVylYe~aatrp~R~~La~IRk--gqyE~l~ek--------ikep~WaPDfGp~~~~PtaG~t~iGaR~pLi  183 (302)
T COG3643         114 RVGEELGIPVYLYEDAATRPERQNLADIRK--GQYEGLKEK--------IKEPKWAPDFGPREVHPTAGVTAIGARMPLI  183 (302)
T ss_pred             HhhHhhCCcEEEehhhccCcccccHHHHhh--hhhhhHHHH--------hcCcccCCCCCccccCCCCcceEeecccceE
Confidence            5799999999999977  999999999999  799999997        7889999999999999999999999999999


Q ss_pred             EeeeeecCCCHHHHHHHHHHhccCCCCCCcceEEeeee-cCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCccccee
Q 029879           84 LYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVH-GEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGY  162 (186)
Q Consensus        84 ayNV~L~t~dl~~Ar~IA~~IR~~~GGL~~VqAmgl~~-~~g~vqVS~Nl~d~~~tp~~~V~e~V~~~A~~~Gv~V~~~y  162 (186)
                      ||||||+|+|++|+|+||++||.++|||++|||+|+.+ ++|++||||||+||++||+|++||.|+.+|.||||.|++++
T Consensus       184 AfNvNL~t~n~eI~kkIakaiR~s~GG~~~vkAi~~~L~dk~~vQVSMN~~ny~KtpiyR~fEtiK~EA~Rygv~vv~sE  263 (302)
T COG3643         184 AFNVNLDTSNMEIGKKIAKAIRFSSGGLRFVKAIAVELKDKGIVQVSMNMTNYEKTPIYRVFETIKMEANRYGVNVVGSE  263 (302)
T ss_pred             EEEeccCcccchHHHHHHHHHhhcCCCeeeeeeeeeeeccCCeEEEEEeecccccCcHHHHHHHHHHHHHhcCCCcccce
Confidence            99999999999999999999999999999999999998 59999999999999999999999999999999999999999


Q ss_pred             ecCCChHHHH
Q 029879          163 FTDFSPEMIV  172 (186)
Q Consensus       163 l~gf~p~~il  172 (186)
                      ++|+.|.+.|
T Consensus       264 ivGl~P~~aL  273 (302)
T COG3643         264 IVGLVPEQAL  273 (302)
T ss_pred             EeccchHHHH
Confidence            9999998744

>PF02971 FTCD: Formiminotransferase domain; InterPro: IPR013802 The formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD) forms a homodimer, with each protomer being comprised of two subdomains

Probab=100.00  E-value=1.4e-35  Score=238.08  Aligned_cols=92  Identities=22%  Similarity=0.372  Sum_probs=78.7

Q ss_pred             CeEEeeeeecCCCHHHHHHHHHHhccCC------CCCCcceEEeeee-cCCeEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 029879           81 WVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLGLVH-GEDSTEIACMLLEPNQVGADRVQNRVEKLAAE  153 (186)
Q Consensus        81 ~LiayNV~L~t~dl~~Ar~IA~~IR~~~------GGL~~VqAmgl~~-~~g~vqVS~Nl~d~~~tp~~~V~e~V~~~A~~  153 (186)
                      |||||||||+++| ++||+||+.||+++      |||++||||||++ ++|++||||||+|+++||+|+|||+|+++|++
T Consensus         1 FLIAyNVnLl~T~-~iA~~IA~~iR~sgrg~~~PGgl~~VkAiG~~l~~~~~aQVSmNltd~~~Tpl~~vfe~v~~eA~~   79 (145)
T PF02971_consen    1 FLIAYNVNLLTTK-EIAKKIAKAIRESGRGKDQPGGLKYVKAIGWYLEERGIAQVSMNLTDYEKTPLHRVFEEVKREAAR   79 (145)
T ss_dssp             --EEEEEEESS-H-HHHHHHHHHHCTTTTCTTC--SCTTEEEEEEEETTTTEEEEEEEES-TTTS-HHHHHHHHHHHHHC
T ss_pred             CeEEEEeccCCcH-HHHHHHHHHHHhcCCCCCCCCCcceeeEeEEeeccCCeeEEEEeeecCCCCcHHHHHHHHHHHHHH
Confidence            8999999998888 99999999999999      9999999999999 58999999999999999999999999999999


Q ss_pred             cCCcccceeecCCChHHHHH
Q 029879          154 EGLDVEKGYFTDFSPEMIVE  173 (186)
Q Consensus       154 ~Gv~V~~~yl~gf~p~~ile  173 (186)
                      +||+|+|++++|+.|.+.|.
T Consensus        80 ~Gv~v~gsElVGlvP~~All   99 (145)
T PF02971_consen   80 YGVPVVGSELVGLVPLDALL   99 (145)
T ss_dssp             TT--EEEEEEES-B-HHHHH
T ss_pred             hCCCccceEEEccccHHHHH
Confidence            99999999999999997553

The formiminotransferase domain has an N-terminal subdomain that is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains []. In humans, deficiency of this enzyme results in a disease phenotype []. This entry represents the C-terminal subdomain of the formiminotransferase domain.; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process; PDB: 1QD1_B 2PFD_C.

>PF07837 FTCD_N: Formiminotransferase domain, N-terminal subdomain; InterPro: IPR012886 The formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD) forms a homodimer, with each protomer being comprised of two subdomains

Probab=99.88  E-value=8.3e-24  Score=175.31  Aligned_cols=66  Identities=33%  Similarity=0.472  Sum_probs=50.8

Q ss_pred             hhhhhhcCCcEEEeecc--CCCCCChHHHhhhcCccccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCeEEeccCC
Q 029879            5 TFYFQCGAVPVFLYAAA--HPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARP   80 (186)
Q Consensus         5 ~~~~~~l~vPVyLYg~A--~p~rr~La~iRr~lG~fe~~~~~~~~~g~~~~~~~~~~PD~GP~~~~p~~Gat~VGAr~   80 (186)
                      ..++++|+|||||||+|  +|+|++|++|||  ||||+++++        ++.++|+|||||+++||++|+|+||||.
T Consensus       111 ~~i~~~l~vPVyLYg~aA~~p~r~~L~~iRr--ge~e~l~~~--------~~~~~w~PD~Gp~~~~~~~Gat~vGAr~  178 (178)
T PF07837_consen  111 ERIGEELGVPVYLYGEAAAHPERRNLADIRR--GEYEGLKEK--------IKDPEWAPDFGPAEFHPTAGATAVGARK  178 (178)
T ss_dssp             HHHHHHHT--EEEEETT-SSCCCSSHHHHCT--TCCCCHHHH--------TTSCCC--SBS-S---TTTB-EEEEE-S
T ss_pred             HHHHHhhCCCEEEehhhhCCcccCcHHHHHH--HHHHhhhhh--------ccCCCCCCCCCCCCCCCCCCeEEEeecC
Confidence            35789999999999944  999999999999  899999886        6788999999999999999999999985

The formiminotransferase domain has an N-terminal subdomain that is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains []. This entry represents the N-terminal subdomain of the formiminotransferase domain.; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process; PDB: 2PFD_C 1QD1_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
1qd1_A	325	Formiminotransferase-cyclodeaminase; functional di	2e-31
1tt9_A	541	Formimidoyltransferase-cyclodeaminase (formiminotr	9e-31

>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1 Length = 325

 Score =  115 bits (288), Expect = 2e-31
 Identities = 41/174 (23%), Positives = 61/174 (35%), Gaps = 14/174 (8%)

Query: 7   YFQCGAVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQ 66
             +   VPV+LY  A  T           G Y       + A W         P+ GP  
Sbjct: 114 LAEELGVPVYLYGEAARTAGRQSLPALRAGEYEALPEKLKQAEWA--------PDFGPSA 165

Query: 67  VSPARGIAMIGARPWVALYNIPIMSTDVAATR-----RIARMVSARGGGLPTVQTLGLVH 121
             P+ G  + GAR ++  +NI ++ST   A R     R       + G L  VQ +G   
Sbjct: 166 FVPSWGATVAGARKFLLAFNINLLSTREQAHRIALDLREQGRGKDQPGRLKKVQAIGWYL 225

Query: 122 GE-DSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPEMIVEK 174
            E +  +++  LL+    G   V     + A E  L V         P   +  
Sbjct: 226 DEKNLAQVSTNLLDFEVTGLHTVFEETCREAQELSLPVVGSQLVGLVPLKALLD 279

>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A Length = 541

 Score =  116 bits (290), Expect = 9e-31
 Identities = 39/169 (23%), Positives = 58/169 (34%), Gaps = 14/169 (8%)

Query: 7   YFQCGAVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQ 66
             +   VPV+LY  A              G Y       + A W         P+ GP  
Sbjct: 115 LAEELNVPVYLYGEAAQMPSRQTLPAIRAGEYEALPEKLKQAEW--------VPDFGPSS 166

Query: 67  VSPARGIAMIGARPWVALYNIPIMSTDVAATR-----RIARMVSARGGGLPTVQTLGLVH 121
             P+ G  + GAR ++  +NI ++ST   A R     R       + G L  VQ +G   
Sbjct: 167 FVPSWGATVTGARKFLIAFNINLLSTKEQAHRIALNLREQGRGKDQPGRLKKVQGIGWYL 226

Query: 122 GE-DSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYFTDFSPE 169
            E +  +++  LL+        V     + A E  L V         P 
Sbjct: 227 EEKNLAQVSTNLLDFEVTALHTVYEEARREAQELNLPVVGSQLVGLVPL 275

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
1qd1_A	325	Formiminotransferase-cyclodeaminase; functional di	100.0
1tt9_A	541	Formimidoyltransferase-cyclodeaminase (formiminotr	100.0

>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1

Probab=100.00  E-value=2.7e-62  Score=432.97  Aligned_cols=156  Identities=24%  Similarity=0.340  Sum_probs=149.4

Q ss_pred             hhhhhcCCcEEEeecc--CCCCCChHHHhhhcCccccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCeEEeccCCCeE
Q 029879            6 FYFQCGAVPVFLYAAA--HPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVA   83 (186)
Q Consensus         6 ~~~~~l~vPVyLYg~A--~p~rr~La~iRr~lG~fe~~~~~~~~~g~~~~~~~~~~PD~GP~~~~p~~Gat~VGAr~~Li   83 (186)
                      .++++|+|||||||+|  +|+|++|++|||  ||||+++++        +++++|+|||||+++||++|+|+||||+|||
T Consensus       113 ~i~~~l~VPVyLYg~Aa~~p~rr~L~~iRr--G~yegl~e~--------~~~~~~~PD~Gp~~~~p~~Gat~vGAr~~li  182 (325)
T 1qd1_A          113 RLAEELGVPVYLYGEAARTAGRQSLPALRA--GEYEALPEK--------LKQAEWAPDFGPSAFVPSWGATVAGARKFLL  182 (325)
T ss_dssp             HHHHHHTCCEEEEETTCSSGGGSCHHHHHT--THHHHHHHH--------TTSGGGCCSBSCCCCCTTTBCEEEEECSCCE
T ss_pred             HHhhhcCCcEEeehhhcCCCccCcHHHhcc--cccccchhh--------ccCCCCCCCCCCCCCCCCcceEEEecCCcee
Confidence            5788999999999988  999999999999  899999875        6678999999999999999999999999999


Q ss_pred             EeeeeecCCCHHHHHHHHHHhccCC------CCCCcceEEeeeec-CCeEEEEeecCCCCCCCHHHHHHHHHHHHHHcCC
Q 029879           84 LYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLGLVHG-EDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGL  156 (186)
Q Consensus        84 ayNV~L~t~dl~~Ar~IA~~IR~~~------GGL~~VqAmgl~~~-~g~vqVS~Nl~d~~~tp~~~V~e~V~~~A~~~Gv  156 (186)
                      |||||| |+|+++||+||++||+++      |||++||||||+|+ +|++||||||+||++||+|+||++|+++|+++||
T Consensus       183 ayNVnL-t~~~~~A~~IA~~vR~~gr~~~~pGGL~~VqAmg~~~~e~~~~qVS~Nl~d~~~t~~~~V~e~V~~~A~~~Gv  261 (325)
T 1qd1_A          183 AFNINL-LSTREQAHRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVSTNLLDFEVTGLHTVFEETCREAQELSL  261 (325)
T ss_dssp             EEEEEE-SSCHHHHHHHHHHHSTTC------CCSTTEEEEEEEETTTTEEEEEEEESCTTTSCHHHHHHHHHHHHHHTTC
T ss_pred             eEeeec-cCcHHHHHHHHHHhhhcCCCCCCCCCccceEEeeEEecCCCeEEEEecccCCccCCHHHHHHHHHHHHHHcCC
Confidence            999999 777999999999999998      99999999999995 9999999999999999999999999999999999


Q ss_pred             cccceeecCCChHHHH
Q 029879          157 DVEKGYFTDFSPEMIV  172 (186)
Q Consensus       157 ~V~~~yl~gf~p~~il  172 (186)
                      .|+++|++||+|.++|
T Consensus       262 ~V~gse~vGl~P~~al  277 (325)
T 1qd1_A          262 PVVGSQLVGLVPLKAL  277 (325)
T ss_dssp             CEEEEEEESCBCHHHH
T ss_pred             ceeceEEeCcchHHHH
Confidence            9999999999999864

>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A

Probab=100.00  E-value=2.4e-59  Score=437.17  Aligned_cols=157  Identities=25%  Similarity=0.343  Sum_probs=150.3

Q ss_pred             hhhhhcCCcEEEeecc--CCCCCChHHHhhhcCccccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCeEEeccCCCeE
Q 029879            6 FYFQCGAVPVFLYAAA--HPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVA   83 (186)
Q Consensus         6 ~~~~~l~vPVyLYg~A--~p~rr~La~iRr~lG~fe~~~~~~~~~g~~~~~~~~~~PD~GP~~~~p~~Gat~VGAr~~Li   83 (186)
                      .++++|+|||||||+|  +|+|++|++|||  ||||+++++        +++++|+|||||+++||++|+|+||||+|||
T Consensus       114 ~i~~~l~vPvylYg~Aa~~p~r~~L~~iRr--G~ye~~~~~--------~~~~~~~PD~Gp~~~~~~~G~t~vGAr~~li  183 (541)
T 1tt9_A          114 RLAEELNVPVYLYGEAAQMPSRQTLPAIRA--GEYEALPEK--------LKQAEWVPDFGPSSFVPSWGATVTGARKFLI  183 (541)
T ss_pred             HHhhhcCCcEEeeHhhcCCCCcCcHHHhhc--cccccchhh--------ccCCCCCCCCCCCCCCCCCceEEEecCccee
Confidence            5788999999999988  999999999999  899999986        6778999999999999999999999999999


Q ss_pred             EeeeeecCCCHHHHHHHHHHhccCC------CCCCcceEEeeeec-CCeEEEEeecCCCCCCCHHHHHHHHHHHHHHcCC
Q 029879           84 LYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLGLVHG-EDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGL  156 (186)
Q Consensus        84 ayNV~L~t~dl~~Ar~IA~~IR~~~------GGL~~VqAmgl~~~-~g~vqVS~Nl~d~~~tp~~~V~e~V~~~A~~~Gv  156 (186)
                      |||||| |+|+++||+||+.||+++      |||++||||||+|+ +|++||||||+||++||+|+||++|+++|+++||
T Consensus       184 ayNV~L-t~~~~~a~~IA~~vr~~gr~~~~~Ggl~~Vqamg~~~~~~~~~qVs~Nl~d~~~t~~~~v~e~v~~~A~~~gv  262 (541)
T 1tt9_A          184 AFNINL-LSTKEQAHRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQVSTNLLDFEVTALHTVYEEARREAQELNL  262 (541)
T ss_pred             eeeeec-cccHHHHHHHHHHhhhcCCCCCCCCCccceeEeeEeecCCCeEEEEecccCCccCCHHHHHHHHHHHHHHcCC
Confidence            999999 889999999999999998      99999999999995 9999999999999999999999999999999999


Q ss_pred             cccceeecCCChHHHHH
Q 029879          157 DVEKGYFTDFSPEMIVE  173 (186)
Q Consensus       157 ~V~~~yl~gf~p~~ile  173 (186)
                      .|++++++||+|.+.|-
T Consensus       263 ~v~gse~vGl~P~~al~  279 (541)
T 1tt9_A          263 PVVGSQLVGLVPLKALL  279 (541)
T ss_pred             ccccceEeccchHHHHH
Confidence            99999999999997553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d1qd1a2	146	d.58.34.1 (A:181-326) Formiminotransferase domain	2e-13
d1qd1a1	179	d.58.34.1 (A:2-180) Formiminotransferase domain of	3e-11

>d1qd1a2 d.58.34.1 (A:181-326) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
family: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
domain: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 85  YNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLGLVHGE-DSTEIACMLLEPNQ 137
           +NI ++ST   A  RIA  +  +G      G L  VQ +G    E +  +++  LL+   
Sbjct: 5   FNINLLSTREQA-HRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVSTNLLDFEV 63

Query: 138 VGADRVQNRVEKLAAEEGLDV 158
            G   V     + A E  L V
Sbjct: 64  TGLHTVFEETCREAQELSLPV 84

>d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
family: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
domain: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 57.2 bits (138), Expect = 3e-11
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 13  VPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARG 72
           VPV+LY  A  T           G Y       + A W         P+ GP    P+ G
Sbjct: 120 VPVYLYGEAARTAGRQSLPALRAGEYEALPEKLKQAEW--------APDFGPSAFVPSWG 171

Query: 73  IAMIGAR 79
             + GAR
Sbjct: 172 ATVAGAR 178

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1qd1a2	146	Formiminotransferase domain of formiminotransferas	100.0
d1qd1a1	179	Formiminotransferase domain of formiminotransferas	99.84

>d1qd1a2 d.58.34.1 (A:181-326) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
family: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
domain: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.1e-36  Score=238.62  Aligned_cols=91  Identities=24%  Similarity=0.340  Sum_probs=87.2

Q ss_pred             CeEEeeeeecCCCHHHHHHHHHHhccCC------CCCCcceEEeeeec-CCeEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 029879           81 WVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLGLVHG-EDSTEIACMLLEPNQVGADRVQNRVEKLAAE  153 (186)
Q Consensus        81 ~LiayNV~L~t~dl~~Ar~IA~~IR~~~------GGL~~VqAmgl~~~-~g~vqVS~Nl~d~~~tp~~~V~e~V~~~A~~  153 (186)
                      |||||||||+|+| ++|++||+.||++|      |||++||||||+++ +|++||||||+|+++||+|+|||+|+++|++
T Consensus         1 fLiAYNVnL~t~~-~~A~~IA~~iRe~Gr~~r~~Ggl~~Vka~G~~l~e~~~aQVSmNl~d~~~t~~h~vfe~v~~~A~~   79 (146)
T d1qd1a2           1 FLLAFNINLLSTR-EQAHRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVSTNLLDFEVTGLHTVFEETCREAQE   79 (146)
T ss_dssp             CCEEEEEEESSCH-HHHHHHHHHHSTTC------CCSTTEEEEEEEETTTTEEEEEEEESCTTTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEeccCCCH-HHHHHHHHHHHHcCCccCCCCCccceeEeeEEECCCCEEEEEEeecccccCCHHHHHHHHHHHHHH
Confidence            8999999999999 99999999999985      99999999999985 7999999999999999999999999999999


Q ss_pred             cCCcccceeecCCChHHHH
Q 029879          154 EGLDVEKGYFTDFSPEMIV  172 (186)
Q Consensus       154 ~Gv~V~~~yl~gf~p~~il  172 (186)
                      +||+|+||+|+|+.|.+.|
T Consensus        80 ~Gv~V~GSElVGLvP~~Al   98 (146)
T d1qd1a2          80 LSLPVVGSQLVGLVPLKAL   98 (146)
T ss_dssp             TTCCEEEEEEESCBCHHHH
T ss_pred             cCCCccccEEEcceeHHHH
Confidence            9999999999999998754

>d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
family: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
domain: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.84  E-value=7.5e-23  Score=166.64  Aligned_cols=65  Identities=28%  Similarity=0.390  Sum_probs=60.4

Q ss_pred             hhhhhcCCcEEEeecc--CCCCCChHHHhhhcCccccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCeEEeccCC
Q 029879            6 FYFQCGAVPVFLYAAA--HPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARP   80 (186)
Q Consensus         6 ~~~~~l~vPVyLYg~A--~p~rr~La~iRr~lG~fe~~~~~~~~~g~~~~~~~~~~PD~GP~~~~p~~Gat~VGAr~   80 (186)
                      .++++|+|||||||+|  .|+|++|++|||  ||||+++++        ++.++|+|||||+++||++|+|+||||.
T Consensus       113 ~i~~~l~vPVfLYg~Aa~~~~r~~l~~iR~--G~yegl~~~--------~~~~~~~PD~GP~~~~~~~Gat~vGAR~  179 (179)
T d1qd1a1         113 RLAEELGVPVYLYGEAARTAGRQSLPALRA--GEYEALPEK--------LKQAEWAPDFGPSAFVPSWGATVAGARK  179 (179)
T ss_dssp             HHHHHHTCCEEEEETTCSSGGGSCHHHHHT--THHHHHHHH--------TTSGGGCCSBSCCCCCTTTBCEEEEECS
T ss_pred             HHHhhcCCceEEehhhcCCcccccHHHHhc--cceeccccc--------ccCCCCCCCCCCCCcCccCCcEEEeecC
Confidence            5789999999999977  899999999999  899999886        6778999999999999999999999995