Citrus Sinensis ID: 029886

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPNQAQQ
Secondary Structure (PSIPRED)
ccHHHHHHHHccccEEEEEcccccEEEEEccccccEEEEEEccHHHHHHHHHHHHHccccccccccEEEEEccccEEEEEcccEEEEEcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccccccccEEEEHHHHHHHHHcccccccccEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccEEEEEcccccEEEEEccccccEEEEEEEcHHHHHHHHHHHHHccHHHHHcccEEEEEEHHHHEEEccccEEEEEcccHHHHHHHHHHHHHccccccccccccEcHHHHHHHcccccHHcccccHHHccccEEEEcHHHHHHHHHcccccccccEEEEccccccccccccccc
Coil and Loop (DISEMBL)
MSAEAIEERLagvpvyalsncneefVLVSgaktgkslglmcFKKEDAEALLHQMKSmdpamrkegsrvvpvplnkvfQLKVNGVAFRLIPESTQVKNALREMEkagfsddafagvpvFQEDLEKSLRRAssdqnklnpafrmgdIQVAVFEEIIKGMKESttsawndvvfippgfdvstnpnqaqq
Flexible Loop (DISEMBL)
MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLkvngvafrlipESTQVKNALREMEKAgfsddafagVPVFQEDLEKSLRRassdqnklnpafrmgdIQVAVFEEIIKGMKESTTSAWNDVVFIPPgfdvstnpnqaqq
Low Complexity Region (SEG)
MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPNQAQQ
Disordered region (IsUnstruct)
********RLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKED*********************VVPVPLNKVFQLKVNGVAFRLIPESTQVK*************DAFAGVPVF********************AFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGF***********
Disordered Region (DISOPRED)
**AEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALL***************RVVPVPLNKVFQLKVNGVAFRLIPESTQVKNAL***********AFAGVPVFQEDLEK***************FRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGF***********
Disordered Region (DISEMBL)
MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPNQAQQ
Disordered Region (DISPRO)
MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFD**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPNQAQQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
F4J469	313	Protein TIC 22-like, chlo	yes	no	0.983	0.584	0.689	2e-73
Q9ZST9	252	Protein TIC 22, chloropla	N/A	no	0.897	0.662	0.4	8e-31
Q9SZB2	268	Protein TIC 22, chloropla	no	no	0.913	0.634	0.405	3e-29

>sp|F4J469|TI22L_ARATH Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana GN=TIC22L PE=3 SV=1

 Score =  275 bits (702), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 140/203 (68%), Positives = 159/203 (78%), Gaps = 20/203 (9%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           +SA+AIEERLAGVPVYALSN NEEFVLVSG  +GKSLGL+  K+EDAE LL +MKSMDP 
Sbjct: 110 LSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPR 169

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ- 119
           MRKEGS+VV + L+KVFQLKVNGVAFRLIPESTQVKNAL+E + AG  DD F GVPVFQ 
Sbjct: 170 MRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQS 229

Query: 120 -------------------EDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 160
                              EDLEKSL RASS QN+LNPA + GDIQVAVFE+I+KGM+ES
Sbjct: 230 KSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFEDIVKGMRES 289

Query: 161 TTSAWNDVVFIPPGFDVSTNPNQ 183
           TTS W+D+VFIPPGF+VST   Q
Sbjct: 290 TTSNWDDIVFIPPGFEVSTEQTQ 312

Involved in protein precursor import into chloroplasts.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZST9|TIC22_PEA Protein TIC 22, chloroplastic OS=Pisum sativum GN=TIC22 PE=1 SV=1

 Score =  133 bits (334), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 114/195 (58%), Gaps = 28/195 (14%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           ++   + + LAG  VY +SN + EFVL+S A+  KS+GL+CF++EDAEA L Q++S    
Sbjct: 53  LTPNHVAKSLAGTSVYTVSNSDNEFVLMSDAEGAKSIGLLCFRQEDAEAFLAQVRSRKKE 112

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ- 119
            R  G++VVP+ L++V+ LKV G+AFR +P+  Q+KNAL E+  A  +  +F GVPVFQ 
Sbjct: 113 FRG-GAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNAL-ELRAA--NRGSFDGVPVFQS 168

Query: 120 -------------------EDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 160
                              EDLE  L + S     +  +     I V  FE+++K M+ S
Sbjct: 169 DLLVVKKKNKRYCPVYFSKEDLEYELSKVSRSSKGVGVS---QHIMVGSFEDVLKKMELS 225

Query: 161 -TTSAWNDVVFIPPG 174
             +S W D+VFIPPG
Sbjct: 226 EKSSGWEDLVFIPPG 240

Involved in protein precursor import into chloroplasts. Imported into the intermembrane space via the Toc translocon. May be involved in the import pathway used by proteins without a cleavable N-terminal pre-sequence.

Pisum sativum (taxid: 3888)

>sp|Q9SZB2|TIC22_ARATH Protein TIC 22, chloroplastic OS=Arabidopsis thaliana GN=TIC22 PE=1 SV=1

 Score =  127 bits (320), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/190 (40%), Positives = 115/190 (60%), Gaps = 20/190 (10%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           +S   + + LAG  V+ +SN N EFVL+S    GKS+GL+CF++EDAEA L Q +     
Sbjct: 70  LSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAFLAQARLRRRE 129

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQE 120
           + K  ++VVP+ L++V+ LKV G++FR +P+  Q+KNAL E++ +G + + F GVPVFQ 
Sbjct: 130 L-KTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNAL-ELKSSG-NKNGFDGVPVFQS 186

Query: 121 DL---EKSLRRAS----------SDQNKLNPAFRMGDIQVAV--FEEIIKGMKES-TTSA 164
           +L    K  RR             + +K   A R GD Q+ V   E++++ M+ S   S 
Sbjct: 187 ELLVVRKKNRRYCPVYFSKEDIERELSKYTRASR-GDQQIMVGSLEDVLRKMEMSEKNSG 245

Query: 165 WNDVVFIPPG 174
           W DV+FIPPG
Sbjct: 246 WEDVIFIPPG 255

Involved in protein precursor import into chloroplasts. Imported into the intermembrane space via the Toc translocon. May be involved in the import pathway used by proteins without a cleavable N-terminal pre-sequence.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
224065274	299	predicted protein [Populus trichocarpa]	0.973	0.605	0.716	5e-75
297831142	314	hypothetical protein ARALYDRAFT_479887 [	0.983	0.582	0.694	3e-72
15229502	313	Tic22-like family protein [Arabidopsis t	0.983	0.584	0.689	9e-72
225463323	293	PREDICTED: protein TIC 22-like, chloropl	0.989	0.627	0.682	1e-70
9293945	320	unnamed protein product [Arabidopsis tha	0.983	0.571	0.671	6e-70
449441171	301	PREDICTED: protein TIC 22-like, chloropl	0.978	0.604	0.650	7e-68
356512421	253	PREDICTED: uncharacterized protein LOC10	0.978	0.719	0.610	9e-64
219363709	285	uncharacterized protein LOC100216723 [Ze	0.946	0.617	0.516	4e-45
242043704	289	hypothetical protein SORBIDRAFT_02g00935	0.913	0.588	0.521	2e-44
125557998	292	hypothetical protein OsI_25669 [Oryza sa	0.951	0.606	0.516	3e-44

>gi|224065274|ref|XP_002301750.1| predicted protein [Populus trichocarpa] gi|222843476|gb|EEE81023.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (730), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 144/201 (71%), Positives = 158/201 (78%), Gaps = 20/201 (9%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           MS E IEERLAGVPVYALSN NEEFVLVSG  TGKSLGL CFK+EDAEALL QMKSMDP 
Sbjct: 96  MSTETIEERLAGVPVYALSNSNEEFVLVSGLSTGKSLGLFCFKQEDAEALLEQMKSMDPG 155

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ- 119
           MRK GS+VVPV LNKVFQLKV+GVAFRLIPE +QVKNAL E E+AG SDD F+GVPVFQ 
Sbjct: 156 MRKGGSKVVPVALNKVFQLKVDGVAFRLIPEPSQVKNALMERERAGLSDDCFSGVPVFQS 215

Query: 120 -------------------EDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 160
                              EDLEKSL RAS +Q+K+NPAF+ GDI+VAVFEEIIK MKE 
Sbjct: 216 RSLVLKSQNRSYRPVFFRKEDLEKSLLRASREQHKVNPAFKQGDIEVAVFEEIIKCMKEG 275

Query: 161 TTSAWNDVVFIPPGFDVSTNP 181
           + + W+DVVFIPPGFDVST P
Sbjct: 276 SATTWDDVVFIPPGFDVSTTP 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831142|ref|XP_002883453.1| hypothetical protein ARALYDRAFT_479887 [Arabidopsis lyrata subsp. lyrata] gi|297329293|gb|EFH59712.1| hypothetical protein ARALYDRAFT_479887 [Arabidopsis lyrata subsp. lyrata]

 Score =  276 bits (706), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 141/203 (69%), Positives = 159/203 (78%), Gaps = 20/203 (9%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           ++A+AIEERLAGVPVYALSN NEEFVLVSG  +GKSLGL+  K+EDAE LL QMKSMDP 
Sbjct: 111 LTADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKQMKSMDPR 170

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ- 119
           MRKEGS+VV + L+KVFQLKVNGVAFRLIPESTQVKNAL+E + AG  DD F GVPVFQ 
Sbjct: 171 MRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQS 230

Query: 120 -------------------EDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 160
                              EDLEKSL RASS QN+LNPA + GDIQVAVFE+I+KGMKES
Sbjct: 231 KSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFEDIVKGMKES 290

Query: 161 TTSAWNDVVFIPPGFDVSTNPNQ 183
           TTS W+D+VFIPPGF+VST   Q
Sbjct: 291 TTSNWDDIVFIPPGFEVSTEQTQ 313

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229502|ref|NP_189013.1| Tic22-like family protein [Arabidopsis thaliana] gi|353678135|sp|F4J469.1|TI22L_ARATH RecName: Full=Protein TIC 22-like, chloroplastic; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 22-III; Short=AtTIC22-III; Flags: Precursor gi|332643283|gb|AEE76804.1| Tic22-like family protein [Arabidopsis thaliana]

 Score =  275 bits (702), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 140/203 (68%), Positives = 159/203 (78%), Gaps = 20/203 (9%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           +SA+AIEERLAGVPVYALSN NEEFVLVSG  +GKSLGL+  K+EDAE LL +MKSMDP 
Sbjct: 110 LSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPR 169

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ- 119
           MRKEGS+VV + L+KVFQLKVNGVAFRLIPESTQVKNAL+E + AG  DD F GVPVFQ 
Sbjct: 170 MRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQS 229

Query: 120 -------------------EDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 160
                              EDLEKSL RASS QN+LNPA + GDIQVAVFE+I+KGM+ES
Sbjct: 230 KSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFEDIVKGMRES 289

Query: 161 TTSAWNDVVFIPPGFDVSTNPNQ 183
           TTS W+D+VFIPPGF+VST   Q
Sbjct: 290 TTSNWDDIVFIPPGFEVSTEQTQ 312

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463323|ref|XP_002268264.1| PREDICTED: protein TIC 22-like, chloroplastic [Vitis vinifera]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 140/205 (68%), Positives = 157/205 (76%), Gaps = 21/205 (10%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           M A AIEERLAGVPVYALSN ++EFVLVSG +TGKSLGL C KKEDAE LL QMK MDP 
Sbjct: 85  MPASAIEERLAGVPVYALSNSSDEFVLVSGVRTGKSLGLFCLKKEDAETLLEQMKLMDPG 144

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ- 119
           MR +GS+VV V LNKVFQLK++GVAFRL+P+STQVKNALR MEKAGFSDD F+GVPVFQ 
Sbjct: 145 MR-QGSKVVAVALNKVFQLKLDGVAFRLMPDSTQVKNALRVMEKAGFSDDGFSGVPVFQS 203

Query: 120 -------------------EDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 160
                              EDLE SL  AS+ QN+LNPAFR GDIQVAVFEEIIKGM+E+
Sbjct: 204 RSLILQSQDKKYRPVFFRKEDLENSLLSASNQQNRLNPAFRQGDIQVAVFEEIIKGMQEN 263

Query: 161 TTSAWNDVVFIPPGFDVSTNPNQAQ 185
            +  W+DVVFIPPGFD S +  Q Q
Sbjct: 264 ASRQWDDVVFIPPGFDASISSPQQQ 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9293945|dbj|BAB01848.1| unnamed protein product [Arabidopsis thaliana]

 Score =  268 bits (686), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 141/210 (67%), Positives = 159/210 (75%), Gaps = 27/210 (12%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           +SA+AIEERLAGVPVYALSN NEEFVLVSG  +GKSLGL+  K+EDAE LL +MKSMDP 
Sbjct: 110 LSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPR 169

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNAL-------REMEKAGFSDDAFA 113
           MRKEGS+VV + L+KVFQLKVNGVAFRLIPESTQVKNAL       RE + AG  DD F 
Sbjct: 170 MRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKFCMWIQRERKTAGIDDDDFH 229

Query: 114 GVPVFQ--------------------EDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEI 153
           GVPVFQ                    EDLEKSL RASS QN+LNPA + GDIQVAVFE+I
Sbjct: 230 GVPVFQSKSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFEDI 289

Query: 154 IKGMKESTTSAWNDVVFIPPGFDVSTNPNQ 183
           +KGM+ESTTS W+D+VFIPPGF+VST   Q
Sbjct: 290 VKGMRESTTSNWDDIVFIPPGFEVSTEQTQ 319

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441171|ref|XP_004138357.1| PREDICTED: protein TIC 22-like, chloroplastic-like [Cucumis sativus] gi|449496760|ref|XP_004160220.1| PREDICTED: protein TIC 22-like, chloroplastic-like [Cucumis sativus]

 Score =  261 bits (668), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 132/203 (65%), Positives = 154/203 (75%), Gaps = 21/203 (10%)

Query: 3   AEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMR 62
            EAIE+RLAG+PVYALSN +EEFVLVSGA   KSLGL CFKK+DAE LL  + +MDP+ R
Sbjct: 100 TEAIEKRLAGIPVYALSNASEEFVLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSAR 159

Query: 63  KEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ--- 119
             GS+VVPV LNKVFQL VNGVAFRLIPE +QVKNAL E +KAG S D F+GVPVFQ   
Sbjct: 160 Y-GSKVVPVALNKVFQLNVNGVAFRLIPECSQVKNALTERKKAGISADGFSGVPVFQSKS 218

Query: 120 -----------------EDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTT 162
                            EDLE SL+RAS +QN++NPA R GDIQVAVFEEIIKGMK+++ 
Sbjct: 219 LILRVQNKSYRPAFFRKEDLENSLQRASREQNQINPALRPGDIQVAVFEEIIKGMKDNSI 278

Query: 163 SAWNDVVFIPPGFDVSTNPNQAQ 185
           S W+D+VFIPPGFDVST+P + Q
Sbjct: 279 STWDDIVFIPPGFDVSTDPKKQQ 301

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512421|ref|XP_003524917.1| PREDICTED: uncharacterized protein LOC100811136 [Glycine max]

 Score =  248 bits (632), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 124/203 (61%), Positives = 154/203 (75%), Gaps = 21/203 (10%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           M+ EAIEERL G+PVYALSN +EEF+LVSG+ +GK+LGL CF K+DAEALL+Q+  +DP 
Sbjct: 51  MTVEAIEERLEGIPVYALSNASEEFLLVSGSSSGKNLGLFCFNKDDAEALLNQVTLIDPH 110

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ- 119
            R +GS+VVPV LNKVFQLKVNGVAFRLIPE +QVKNAL+E EK+GF+   F+GVPVFQ 
Sbjct: 111 AR-QGSKVVPVALNKVFQLKVNGVAFRLIPEFSQVKNALQEREKSGFASSGFSGVPVFQS 169

Query: 120 -------------------EDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 160
                              EDLE +L+ A+ +QNKLNP  R GDIQVA  E++IK MKE+
Sbjct: 170 RSLILKSQNKRFRPLFFRKEDLENTLKSAAREQNKLNPTMRKGDIQVATLEDVIKEMKEN 229

Query: 161 TTSAWNDVVFIPPGFDVSTNPNQ 183
           +TS W+DV+FIPPGFDVS + N+
Sbjct: 230 STSNWDDVIFIPPGFDVSDDSNE 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219363709|ref|NP_001136600.1| uncharacterized protein LOC100216723 [Zea mays] gi|194696322|gb|ACF82245.1| unknown [Zea mays] gi|414884262|tpg|DAA60276.1| TPA: hypothetical protein ZEAMMB73_963062 [Zea mays]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/211 (51%), Positives = 138/211 (65%), Gaps = 35/211 (16%)

Query: 6   IEERLAGVPVYALSNCNEEFVLVSGAKTG----------KSLGLMCFKKEDAEALLHQMK 55
           IEERLAGVPVYAL+N  +EFVLVS  + G          ++LGL+CF+KEDA+ALL QM 
Sbjct: 76  IEERLAGVPVYALANAAQEFVLVSSTRVGGQGGESVSPTQALGLLCFRKEDADALLEQM- 134

Query: 56  SMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAG-FSDDAFAG 114
             D  MR  GS VVPV LNKV Q+K +GVAFR +P+S+QV NA++ M+  G ++ + F G
Sbjct: 135 --DGDMRA-GSGVVPVALNKVIQMKSDGVAFRFLPDSSQVANAIKLMQDEGLYAGEGFPG 191

Query: 115 VPVFQ--------------------EDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEII 154
           VPVFQ                    EDL+ SL R S DQ K NPA R GD QV+  E+II
Sbjct: 192 VPVFQSRSLVLMSDNKRYRPVFFRKEDLDNSLHRTSRDQQKPNPAVRFGDTQVSSLEDII 251

Query: 155 KGMKESTTSAWNDVVFIPPGFDVSTNPNQAQ 185
           K MK+S++S W+DVVFIPPGFD++T    +Q
Sbjct: 252 KSMKDSSSSKWDDVVFIPPGFDLATGSTPSQ 282

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242043704|ref|XP_002459723.1| hypothetical protein SORBIDRAFT_02g009350 [Sorghum bicolor] gi|241923100|gb|EER96244.1| hypothetical protein SORBIDRAFT_02g009350 [Sorghum bicolor]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/207 (52%), Positives = 135/207 (65%), Gaps = 37/207 (17%)

Query: 6   IEERLAGVPVYALSNCNEEFVLVSGAKTG------------KSLGLMCFKKEDAEALLHQ 53
           IEERLAGVPVYAL+N  +EFVLVS  + G             +LGL+CF+KEDA+ALL Q
Sbjct: 78  IEERLAGVPVYALANAAQEFVLVSSTRVGGQGGEGVRVRPPPALGLLCFRKEDADALLEQ 137

Query: 54  MKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAG-FSDDAF 112
           M+     MR  GS VVPV LNKV QLK +GVAFR +P+S+QV NA++ M+  G ++ + F
Sbjct: 138 MEG---DMRA-GSSVVPVALNKVIQLKSDGVAFRFLPDSSQVANAIKLMQDEGLYAREGF 193

Query: 113 AGVPVFQ--------------------EDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEE 152
            GVPVFQ                    EDL+ SL R S DQ K NPA R GD QV+  E+
Sbjct: 194 PGVPVFQSRSLVLMSDNKRYRPVFFRKEDLDNSLHRTSRDQQKPNPAVRFGDTQVSSLED 253

Query: 153 IIKGMKESTTSAWNDVVFIPPGFDVST 179
           IIK MK+S++S W+DVVFIPPGFD++T
Sbjct: 254 IIKSMKDSSSSKWDDVVFIPPGFDLAT 280

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125557998|gb|EAZ03534.1| hypothetical protein OsI_25669 [Oryza sativa Indica Group]

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/215 (51%), Positives = 139/215 (64%), Gaps = 38/215 (17%)

Query: 6   IEERLAGVPVYALSNCNEEFVLVSGAKTGK-------------SLGLMCFKKEDAEALLH 52
           IEERLAGVPVYAL+N ++EFVLVS A+ G              +LGL+CF++EDA+ALL 
Sbjct: 80  IEERLAGVPVYALANSSQEFVLVSSARGGGGGGGGARAAVPPPALGLLCFRREDADALLA 139

Query: 53  QMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAG-FSDDA 111
           QM     A    GS VVPV LNKV QLK +GVAFR +P+S+QV NA++ ME  G + +D 
Sbjct: 140 QMDGDMAA----GSTVVPVALNKVIQLKSDGVAFRFVPDSSQVANAMKLMENEGQYVNDG 195

Query: 112 FAGVPVFQ--------------------EDLEKSLRRASSDQNKLNPAFRMGDIQVAVFE 151
           F GVPVFQ                    EDL+ SL RAS DQ K NPA +MGDIQV+  E
Sbjct: 196 FPGVPVFQSRSLVLMSDNKRYRPIFFRKEDLDNSLHRASRDQQKPNPAVKMGDIQVSSLE 255

Query: 152 EIIKGMKESTTSAWNDVVFIPPGFDVSTNPNQAQQ 186
            IIK MK+S++S W+D VFIPPGFD++T+  Q+  
Sbjct: 256 NIIKSMKDSSSSKWDDAVFIPPGFDLATSSKQSNH 290

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
TAIR|locus:2095213	313	Tic22-III "translocon at the i	0.768	0.456	0.678	1e-43
TAIR|locus:2119146	268	Tic22-IV "translocon at the in	0.919	0.638	0.407	4.4e-29

TAIR|locus:2095213 Tic22-III "translocon at the inner envelope membrane of chloroplasts 22-III" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 99/146 (67%), Positives = 114/146 (78%)

Query:     1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
             +SA+AIEERLAGVPVYALSN NEEFVLVSG  +GKSLGL+  K+EDAE LL +MKSMDP 
Sbjct:   110 LSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPR 169

Query:    61 MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQE 120
             MRKEGS+VV + L+KVFQLKVNGVAFRLIPESTQVKNAL+E + AG  DD F GVPVFQ 
Sbjct:   170 MRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQS 229

Query:   121 DLEKSLRRASSDQNKLNPAFRMGDIQ 146
                KSL   S + +     FR  D++
Sbjct:   230 ---KSLILRSENMSYRPVFFRKEDLE 252

GO:0009507 "chloroplast" evidence=ISM

GO:0009706 "chloroplast inner membrane" evidence=ISS

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2119146 Tic22-IV "translocon at the inner envelope membrane of chloroplasts 22-IV" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 77/189 (40%), Positives = 117/189 (61%)

Query:     1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
             +S   + + LAG  V+ +SN N EFVL+S    GKS+GL+CF++EDAEA L Q +     
Sbjct:    70 LSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAFLAQARLRRRE 129

Query:    61 MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQE 120
             + K  ++VVP+ L++V+ LKV G++FR +P+  Q+KNAL E++ +G + + F GVPVFQ 
Sbjct:   130 L-KTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNAL-ELKSSG-NKNGFDGVPVFQS 186

Query:   121 DL---EKSLRR------ASSD-QNKLNPAFRM--GDIQVAV--FEEIIKGMKEST-TSAW 165
             +L    K  RR      +  D + +L+   R   GD Q+ V   E++++ M+ S   S W
Sbjct:   187 ELLVVRKKNRRYCPVYFSKEDIERELSKYTRASRGDQQIMVGSLEDVLRKMEMSEKNSGW 246

Query:   166 NDVVFIPPG 174
              DV+FIPPG
Sbjct:   247 EDVIFIPPG 255


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      186       186   0.00083  110 3  11 22  0.46    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  140 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.48u 0.13s 18.61t   Elapsed:  00:00:01
  Total cpu time:  18.48u 0.13s 18.61t   Elapsed:  00:00:01
  Start:  Thu May  9 23:19:12 2013   End:  Thu May  9 23:19:13 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
pfam04278	270	pfam04278, Tic22, Tic22-like family	1e-52
TIGR00995	270	TIGR00995, 3a0901s06TIC22, chloroplast protein imp	1e-34

>gnl|CDD|218002 pfam04278, Tic22, Tic22-like family

 Score =  168 bits (428), Expect = 1e-52
 Identities = 79/205 (38%), Positives = 118/205 (57%), Gaps = 35/205 (17%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTG-KSLGLMCFKKEDAEALLHQMKSMDP 59
           +S + + E+LAGVPV+ ++N N E +LVSG   G KS+GL+ F +EDAEA L ++K  +P
Sbjct: 59  LSEDEVAEKLAGVPVFTITNSNGEPLLVSGKNGGGKSVGLLFFSQEDAEAFLKELKKQNP 118

Query: 60  AMRKEGSRVVPVPLNKVFQL------KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFA 113
            +   G++VVP+ L +V++L      KV G+AFR +P+  QVKNAL  ++K G + + F 
Sbjct: 119 EL-ASGAKVVPISLGQVYKLAQSNQKKVEGLAFRFVPDPKQVKNALELLKKNGQNVNDFR 177

Query: 114 GVPVFQ------------------------EDLEKSLRRASSDQNKLNPAFRMGDIQVAV 149
           GVPVFQ                        EDL++ L RA   Q  L  + +   I+V  
Sbjct: 178 GVPVFQARSGEGYLTIQQDNKQYIPFFFSKEDLQRMLDRAKRQQPDLASSVK---IEVIS 234

Query: 150 FEEIIKGMKESTTSAWNDVVFIPPG 174
            E+++K M  S  S W+ ++FIPPG
Sbjct: 235 LEDVLKKMLTSDDSEWDKIIFIPPG 259

The preprotein translocation at the inner envelope membrane of chloroplasts so far involves five proteins: Tic110, Tic55, Tic40, Tic22 (this family) and Tic20. The molecular function of these proteins has not yet been established. Length = 270

>gnl|CDD|233226 TIGR00995, 3a0901s06TIC22, chloroplast protein import component, Tic22 family

 Score =  122 bits (308), Expect = 1e-34
 Identities = 69/195 (35%), Positives = 106/195 (54%), Gaps = 28/195 (14%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           +  E + + LAG  V+ +SN   EFVL S     KS+GL+CF++EDAEA L Q++   P 
Sbjct: 70  LPPEEVAKILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQEDAEAFLAQLRKRKPE 129

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ- 119
           +    ++VVP+ L++V++LKV G+ FR +P+  Q+KNAL E+  A  + + F GVPVFQ 
Sbjct: 130 VGS-QAKVVPITLDQVYKLKVEGIGFRFLPDPAQIKNAL-ELPAA--NSEYFDGVPVFQS 185

Query: 120 -------------------EDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 160
                              ED+E+ L +   +   +  +     I V   E+++  M+ S
Sbjct: 186 GLLVVQKKNERYCPVYFSKEDIEQELSKFKRESPGMADSQV---IMVGSMEDVLSKMETS 242

Query: 161 -TTSAWNDVVFIPPG 174
              S W D +FIPPG
Sbjct: 243 EKDSGWEDQIFIPPG 257

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein [Transport and binding proteins, Amino acids, peptides and amines]. Length = 270

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
PF04278	274	Tic22: Tic22-like family; InterPro: IPR007378 Chlo	100.0
TIGR00995	270	3a0901s06TIC22 chloroplast protein import componen	100.0
PF04278	274	Tic22: Tic22-like family; InterPro: IPR007378 Chlo	99.34
TIGR00995	270	3a0901s06TIC22 chloroplast protein import componen	99.16
PF11360	86	DUF3110: Protein of unknown function (DUF3110); In	94.7
PF11572	103	DUF3234: Protein of unknown function (DUF3234); In	89.64
PF11042	104	DUF2750: Protein of unknown function (DUF2750); In	87.92
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	81.7

>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane

Probab=100.00  E-value=7e-51  Score=350.36  Aligned_cols=179  Identities=44%  Similarity=0.735  Sum_probs=135.8

Q ss_pred             CCHHHHHHhcCCCcEEEEEcCCCCeEEEEcCCC-CceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc
Q 029886            1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKT-GKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL   79 (186)
Q Consensus         1 l~~~~I~ekL~~VPVF~vtn~~g~p~l~~~~~~-~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l   79 (186)
                      ||+++|+++|++||||+|||++|+||+++++++ +..+++||||++||+++|+++|+++|+++++ +||.+|+|++||++
T Consensus        63 L~~~~V~~kL~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~s~~dA~~~L~~lk~~~p~~~~~-~kV~pvsL~~vY~l  141 (274)
T PF04278_consen   63 LPEEEVEEKLAGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFFSQQDAEAFLAQLKKSNPELASG-AKVVPVSLGKVYQL  141 (274)
T ss_dssp             --HHHHHHHHTTSEEEEEE-TT--B-----TTS--SEEEEEES-HHHHHHHHHHHHH-SSHHHTT--EEEEEEHHHHHHH
T ss_pred             CCHHHHHHHhcCceEEEEECCCCCEEEeccCCCCCceEEEEEecHHHHHHHHHHHhhhCccccCc-eEEEEecHHHHHHH
Confidence            789999999999999999999999999998874 5677788899999999999999999999988 99999999999999


Q ss_pred             ------cccCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCccchH------------------------HHHHHHHHHH
Q 029886           80 ------KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ------------------------EDLEKSLRRA  129 (186)
Q Consensus        80 ------~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~GVPlF~------------------------edl~~~l~~~  129 (186)
                            +.+++.|+|+|+++||++|+++++++|+.+++|+|||||+                        |||+++|+++
T Consensus       142 ~~~~~~k~~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~~~Lti~~~~~~~iPlFF~kedL~~~l~k~  221 (274)
T PF04278_consen  142 AQENKKKPEGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVPVFYAEGGKGYLTIKQDNKRIIPLFFDKEDLQAALEKA  221 (274)
T ss_dssp             HHHTTT-TT-EEEEEE--HHHHHHHHHHHHTTT---S---S-EEEEEESST-B-EETTTTEEEEEEESSHHHHHHHHHHH
T ss_pred             HHHhhcCCcCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeEEEEEcCCCceEEEeeCCeEEEEEEecHHHHHHHHHHH
Confidence                  6789999999999999999999999999888999999999                        9999999999


Q ss_pred             hhhhcccCCCCc-cCceEEEeHHHHHHhhhcCCCCCcceEEEecCcccccCCCccc
Q 029886          130 SSDQNKLNPAFR-MGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPNQA  184 (186)
Q Consensus       130 ~~~~~~~~P~~~-~~~I~V~~Le~vi~~m~~~~~~~~~~i~fiPp~~s~~~~~~~~  184 (186)
                      ++++    |++. +++|+|++|+++|++|++++|++|++++||||++|++.+-+.+
T Consensus       222 ~kq~----p~~~~~~~I~V~~Le~vI~~m~~~~d~~~~~i~fiP~~es~~~i~~~~  273 (274)
T PF04278_consen  222 KKQQ----PDLAKEPKIQVVSLEDVIKTMEESDDSDLKKIVFIPPGESLEFIQSLK  273 (274)
T ss_dssp             TTT-----TT-----EEEEEEHHHHHHHHHH---GGGGGEEEE--HHHHHHHHTS-
T ss_pred             HHhC----CCCcCCceEEEEcHHHHHHHHhcCCCCCcceEEEECCHHHHHHHHHhc
Confidence            9887    7777 8999999999999999999999999999999999999884433

This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.

>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family

Probab=100.00  E-value=1.6e-48  Score=333.13  Aligned_cols=171  Identities=36%  Similarity=0.663  Sum_probs=155.8

Q ss_pred             CCHHHHHHhcCCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhcc
Q 029886            1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK   80 (186)
Q Consensus         1 l~~~~I~ekL~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l~   80 (186)
                      ||++||+++|++||||+|+|++|+||+++++++++++|+||++++||++||+++|++||+++++ +||++++||+||+++
T Consensus        70 L~e~eV~ekL~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~qedA~afL~~lk~~~p~l~~~-~kV~pvsL~~vYkl~  148 (270)
T TIGR00995        70 LPPEEVAKILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQEDAEAFLAQLRKRKPEVGSQ-AKVVPITLDQVYKLK  148 (270)
T ss_pred             CCHHHHHHHhcCCceEEEEcCCCCeEEEECCCCCceEEEEECCHHHHHHHHHHHHhhCccccCC-ceEEEEEHHHHHHHh
Confidence            7999999999999999999999999999999999999999888888999999999999999999 999999999999998


Q ss_pred             ccCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCccchH--------------------HHHHHHHHHHhhhhcccCCCC
Q 029886           81 VNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ--------------------EDLEKSLRRASSDQNKLNPAF  140 (186)
Q Consensus        81 ~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~GVPlF~--------------------edl~~~l~~~~~~~~~~~P~~  140 (186)
                      .+++.|+|+|+++||++|++++ ++++  ++|.|||||+                    |||+++|+++++++    |++
T Consensus       149 ~e~l~F~fiP~~~qV~~A~~ll-~~~~--~~~~GVPlF~~~~Lti~~~n~~~iP~FF~Kedlq~~L~~~kkq~----p~l  221 (270)
T TIGR00995       149 VEGIGFRFLPDPAQIKNALELP-AANS--EYFDGVPVFQSGLLVVQKKNERYCPVYFSKEDIEQELSKFKRES----PGM  221 (270)
T ss_pred             hcCccEEEeCCHHHHHHHHHHH-hcCc--cCCCCccEEeecceEEEeCCeEEEeeEeeHHHHHHHHHHHhHhC----cCc
Confidence            8889999999999999999999 3344  4678999999                    99999999999987    888


Q ss_pred             c-cCceEEEeHHHHHHhhhcC--CCCCcceEEEecCcccccC
Q 029886          141 R-MGDIQVAVFEEIIKGMKES--TTSAWNDVVFIPPGFDVST  179 (186)
Q Consensus       141 ~-~~~I~V~~Le~vi~~m~~~--~~~~~~~i~fiPp~~s~~~  179 (186)
                      + +.+|+|++||+||++|+++  +|.+.++|.|+|+.++++.
T Consensus       222 ~~~~~I~V~~Le~vi~~m~~~~~~~~~~~~I~l~Ps~e~~~~  263 (270)
T TIGR00995       222 ADSQVIMVGSMEDVLSKMETSEKDSGWEDQIFIPPGQEAIQH  263 (270)
T ss_pred             CCCccEEEEeHHHHHHHHhccCCCCcccceEEECCCHHHHHH
Confidence            8 8999999999999999985  6666666666666666654

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.

>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane

Probab=99.34  E-value=2.1e-12  Score=111.61  Aligned_cols=90  Identities=23%  Similarity=0.349  Sum_probs=66.7

Q ss_pred             HhcCCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc--cc---c
Q 029886            8 ERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL--KV---N   82 (186)
Q Consensus         8 ekL~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l--~~---~   82 (186)
                      +.+.|||||.+.+.+  .+++...++..++|+| |+++|+++.++++++++|+++.+ .+|.+++|+.+++.  ++   +
T Consensus       178 ~~f~GVPvF~~~~~~--~~Lti~~~~~~~iPlF-F~kedL~~~l~k~~kq~p~~~~~-~~I~V~~Le~vI~~m~~~~d~~  253 (274)
T PF04278_consen  178 KQFQGVPVFYAEGGK--GYLTIKQDNKRIIPLF-FDKEDLQAALEKAKKQQPDLAKE-PKIQVVSLEDVIKTMEESDDSD  253 (274)
T ss_dssp             S---S-EEEEEESST---B-EETTTTEEEEEEE-SSHHHHHHHHHHHTTT-TT------EEEEEEHHHHHHHHHH---GG
T ss_pred             ccCCCeEEEEEcCCC--ceEEEeeCCeEEEEEE-ecHHHHHHHHHHHHHhCCCCcCC-ceEEEEcHHHHHHHHhcCCCCC
Confidence            557899999999988  6666667778999999 89999999999999999999999 99999999999987  22   3


Q ss_pred             CeeEEEecCHHHHHHHHHH
Q 029886           83 GVAFRLIPESTQVKNALRE  101 (186)
Q Consensus        83 ~~~f~~vP~~~qv~~A~~l  101 (186)
                      --.++|||+.+.+++++++
T Consensus       254 ~~~i~fiP~~es~~~i~~~  272 (274)
T PF04278_consen  254 LKKIVFIPPGESLEFIQSL  272 (274)
T ss_dssp             GGGEEEE--HHHHHHHHTS
T ss_pred             cceEEEECCHHHHHHHHHh
Confidence            4489999999999999765

This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.

>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family

Probab=99.16  E-value=1.3e-10  Score=100.18  Aligned_cols=85  Identities=20%  Similarity=0.331  Sum_probs=73.0

Q ss_pred             CCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc--cc--c---C
Q 029886           11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL--KV--N---G   83 (186)
Q Consensus        11 ~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l--~~--~---~   83 (186)
                      .|||||.+     +.+.+. .++..++|+| |+++|+++.|+++|+++|+++.+ .+|.+++|+.+++.  ++  +   .
T Consensus       178 ~GVPlF~~-----~~Lti~-~~n~~~iP~F-F~Kedlq~~L~~~kkq~p~l~~~-~~I~V~~Le~vi~~m~~~~~~~~~~  249 (270)
T TIGR00995       178 DGVPVFQS-----GLLVVQ-KKNERYCPVY-FSKEDIEQELSKFKRESPGMADS-QVIMVGSMEDVLSKMETSEKDSGWE  249 (270)
T ss_pred             CCccEEee-----cceEEE-eCCeEEEeeE-eeHHHHHHHHHHHhHhCcCcCCC-ccEEEEeHHHHHHHHhccCCCCccc
Confidence            58999999     444444 6668999999 79999999999999999999999 99999999999986  21  2   3


Q ss_pred             eeEEEecCHHHHHHHHHHHH
Q 029886           84 VAFRLIPESTQVKNALREME  103 (186)
Q Consensus        84 ~~f~~vP~~~qv~~A~~l~~  103 (186)
                      -.+.|+|+.+.+++++++.+
T Consensus       250 ~~I~l~Ps~e~~~~iq~~~~  269 (270)
T TIGR00995       250 DQIFIPPGQEAIQHMQSLIA  269 (270)
T ss_pred             ceEEECCCHHHHHHHHHHhc
Confidence            48899999999999998753

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.

>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function

Probab=94.70  E-value=0.23  Score=36.07  Aligned_cols=72  Identities=14%  Similarity=0.285  Sum_probs=53.4

Q ss_pred             EEEEE---cCCC-CeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc-cccCeeEEEe
Q 029886           15 VYALS---NCNE-EFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-KVNGVAFRLI   89 (186)
Q Consensus        15 VF~vt---n~~g-~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l-~~~~~~f~~v   89 (186)
                      ||+++   +.++ ..+.+... +..++.+| =+.+||.+|...|..+.-.   . ..|..+..+.+..+ ++.|..+++|
T Consensus         1 v~VL~f~~~~~~eGI~si~~~-~~~~Vl~F-E~edDA~RYa~lLEAqd~~---~-p~Ve~id~~~i~~fC~~~gy~~~iv   74 (86)
T PF11360_consen    1 VYVLLFNAGTETEGIYSIQNK-DRNVVLMF-EDEDDAERYAGLLEAQDFP---D-PTVEEIDPEEIEEFCRSAGYEYEIV   74 (86)
T ss_pred             CEEEEecCCCCCCcEEEEEeC-CCCEEEEE-ccHHHHHHHHHHHHhcCCC---C-CCeEEECHHHHHHHHHHCCceEEEE
Confidence            57777   3344 44444433 36788888 6999999999999765432   2 57999999999998 7888999999


Q ss_pred             cCH
Q 029886           90 PES   92 (186)
Q Consensus        90 P~~   92 (186)
                      |.-
T Consensus        75 ~~g   77 (86)
T PF11360_consen   75 PPG   77 (86)
T ss_pred             CCC
Confidence            864

>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function

Probab=89.64  E-value=1.6  Score=32.39  Aligned_cols=51  Identities=25%  Similarity=0.409  Sum_probs=38.2

Q ss_pred             CcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEee
Q 029886           13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVP   72 (186)
Q Consensus        13 VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~   72 (186)
                      =|=|++.+..|+-++...-. .+.-++. .|.++|++|+++    +|++   |.+|.++-
T Consensus         7 g~WYVLe~~pGEHLvlealg-qrls~iW-tS~~~A~~F~~~----~p~~---GM~V~~Le   57 (103)
T PF11572_consen    7 GTWYVLEDEPGEHLVLEALG-QRLSGIW-TSRELAQAFLAR----HPEL---GMRVSPLE   57 (103)
T ss_dssp             SSEEEEESSTT-BEEEEETT-EEEEEEB-SSHHHHHHHHHT----STSS-----EEEEE-
T ss_pred             cceEEecCCCCceeeHHHHh-hhHHhhe-ecHHHHHHHHHh----Cccc---CcEeecch
Confidence            47799999999999987543 4566666 999999999987    6886   58998874

Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.

>PF11042 DUF2750: Protein of unknown function (DUF2750); InterPro: IPR021284 This family is conserved in Proteobacteria

Probab=87.92  E-value=2.4  Score=31.27  Aligned_cols=72  Identities=19%  Similarity=0.279  Sum_probs=51.1

Q ss_pred             CCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc-----cccCee
Q 029886           11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-----KVNGVA   85 (186)
Q Consensus        11 ~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l-----~~~~~~   85 (186)
                      ..==||++.+.+| .++....++..+++++ =+++-|++....      + .++ .++..++|+....-     ..+++.
T Consensus        11 ~~e~vw~L~~~~g-~~~~~~~~~~~~~p~W-~~~~~A~~~~~~------e-w~~-~~~~~I~L~~Fle~wl~~L~~d~~~   80 (104)
T PF11042_consen   11 DSEEVWGLKDEDG-WVLCDSDEGEDVLPFW-PSKEFAEACATD------E-WAD-YKPKEISLDEFLEEWLPGLQEDGVL   80 (104)
T ss_pred             hCCEEEEEEcCCc-EEEeecCCCcEEEEeC-CCHHHHHHHHhc------c-ccc-CeEEEEEHHHHHHHHhHhHHHCCCE
Confidence            3445899999999 6666655545568888 699989886654      2 334 89999999988862     566665


Q ss_pred             EEEecCH
Q 029886           86 FRLIPES   92 (186)
Q Consensus        86 f~~vP~~   92 (186)
                      .-+-|+.
T Consensus        81 vgv~~~~   87 (104)
T PF11042_consen   81 VGVFPNP   87 (104)
T ss_pred             EEEecCC
Confidence            5555554

The function is not known.

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=81.70  E-value=3.8  Score=32.94  Aligned_cols=79  Identities=15%  Similarity=0.231  Sum_probs=59.8

Q ss_pred             CCcEEEEEcCCCCeEEEEcCCCCceEEEeee-------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----c
Q 029886           12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----K   80 (186)
Q Consensus        12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~-------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~   80 (186)
                      ..|=|.+.|.+|+.+..++-.+..++-+| +       +-.+|.+|=+.+    +++.+-|+.|.-||-|.+.++    .
T Consensus         9 ~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyF-YPk~~TpgCT~Ea~~Frd~~----~ef~~~~a~V~GIS~Ds~~~~~~F~~   83 (157)
T COG1225           9 KAPDFELPDQDGETVSLSDLRGKPVVLYF-YPKDFTPGCTTEACDFRDLL----EEFEKLGAVVLGISPDSPKSHKKFAE   83 (157)
T ss_pred             cCCCeEeecCCCCEEehHHhcCCcEEEEE-CCCCCCCcchHHHHHHHHHH----HHHHhCCCEEEEEeCCCHHHHHHHHH
Confidence            47999999999999888777766566555 5       445677776665    333333599999999999998    4


Q ss_pred             ccCeeEEEecCHHHH
Q 029886           81 VNGVAFRLIPESTQV   95 (186)
Q Consensus        81 ~~~~~f~~vP~~~qv   95 (186)
                      ..++.|.|+.|...-
T Consensus        84 k~~L~f~LLSD~~~~   98 (157)
T COG1225          84 KHGLTFPLLSDEDGE   98 (157)
T ss_pred             HhCCCceeeECCcHH
Confidence            579999999998543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	186
4ev1_A	252	Anabaena Tic22 (Protein Transport) Length = 252		9e-06

>pdb|4EV1|A Chain A, Anabaena Tic22 (Protein Transport) Length = 252

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 94/212 (44%), Gaps = 42/212 (19%)
Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVS--------GAKTGKSLGLMCFKKEDAEALLH 52
           +S + I+E+L  VP+Y ++  NE+ + +S        G K G S+      +++A+A ++
Sbjct: 2   LSEQQIKEKLDSVPIYLVT--NEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFIN 59
Query: 53  QM---KSMDPAMRK--EGSRVVPVPLNKVFQL------KVNGVAFRLIPESTQVKNALRE 101
           ++   K+ DP M++  +  +V  VPL  ++Q         N + F   P   ++K A+  
Sbjct: 60  ELRNAKNKDPKMQEIVKSLQVTAVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDL 119
Query: 102 MEKAGFSDDAFAGVPVFQ---------------------EDLEKSLRRASSDQNKLNPAF 140
           + ++G   + F  VP+F                        L  S + A     ++ P  
Sbjct: 120 LRQSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGLLGQVKPKH 179
Query: 141 RMGDIQVAVFEEIIKGMKESTTSAWNDVVFIP 172
              DIQV   + +++ +++   +  N VV +P
Sbjct: 180 PKADIQVLDIDGVLQTLQDKNDTWLNQVVLVP 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
4ev1_A	252	Anabena TIC22; TIC22 fold, chaperon, protein trans	8e-36

>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP} Length = 252

 Score =  124 bits (312), Expect = 8e-36
 Identities = 43/219 (19%), Positives = 88/219 (40%), Gaps = 52/219 (23%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVS------GAKTGKSLGLMCFKKEDAEALLHQM 54
           +S + I+E+L  VP+Y ++N     +         G K G S+      +++A+A ++++
Sbjct: 2   LSEQQIKEKLDSVPIYLVTNEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFINEL 61

Query: 55  K---SMDPAMRKEGS--RVVPVPLNKVFQL------KVNGVAFRLIPESTQVKNALREME 103
           +   + DP M++     +V  VPL  ++Q         N + F   P   ++K A+  + 
Sbjct: 62  RNAKNKDPKMQEIVKSLQVTAVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDLLR 121

Query: 104 KAGFSDDAFAGVPVFQ----------------------------EDLEKSLRRASSDQNK 135
           ++G   + F  VP+F                             +D +  L +      K
Sbjct: 122 QSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGLLGQVKPKHPK 181

Query: 136 LNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPG 174
                   DIQV   + +++ +++   +  N VV +P  
Sbjct: 182 A-------DIQVLDIDGVLQTLQDKNDTWLNQVVLVPSP 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
4ev1_A	252	Anabena TIC22; TIC22 fold, chaperon, protein trans	100.0
4e6z_A	279	Apicoplast TIC22, putative; TIC complex, import pr	100.0
4ev1_A	252	Anabena TIC22; TIC22 fold, chaperon, protein trans	99.28
4e6z_A	279	Apicoplast TIC22, putative; TIC complex, import pr	98.89
2z0r_A	103	Putative uncharacterized protein TTHA0547; alpha/b	83.26

>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}

Probab=100.00  E-value=1.5e-49  Score=336.77  Aligned_cols=174  Identities=24%  Similarity=0.434  Sum_probs=161.7

Q ss_pred             CCHHHHHHhcCCCcEEEEEcCCCCeEEEEcCCC------CceEEEeeeCHHHHHHHHHHHHh---cCc---ccccCCeEE
Q 029886            1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKT------GKSLGLMCFKKEDAEALLHQMKS---MDP---AMRKEGSRV   68 (186)
Q Consensus         1 l~~~~I~ekL~~VPVF~vtn~~g~p~l~~~~~~------~~~~~lFf~~~~DA~~~L~~~k~---~~p---~~~~~~~kV   68 (186)
                      ||+++|+++|++||||+|||++|+||+++.+++      +..+++||||++||++||+++|+   +||   +++++ +||
T Consensus         2 L~e~eV~ekL~~VPVF~Itn~~G~Pll~~~~~~~~~~~~~~~V~~~F~s~~dA~~~L~~lk~~~~~np~~~~~~~~-~kV   80 (252)
T 4ev1_A            2 LSEQQIKEKLDSVPIYLVTNEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFINELRNAKNKDPKMQEIVKS-LQV   80 (252)
T ss_dssp             CCHHHHHHHHTTSEEEEEECTTCCBCEEECCCCTTSCCSCSEEEEEESCHHHHHHHHHHHHHCSSCCHHHHHHHTT-CEE
T ss_pred             CCHHHHHHHhcCCcEEEEECCCCCeEEEecCCccccccCCCeEEEEEecHHHHHHHHHHHHhccccCchhhhhccC-ceE
Confidence            899999999999999999999999999998772      34556666999999999999999   999   99999 999


Q ss_pred             EEeeccchhhc------cccCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCccchH-----------------------
Q 029886           69 VPVPLNKVFQL------KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ-----------------------  119 (186)
Q Consensus        69 ~~v~L~~vy~l------~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~GVPlF~-----------------------  119 (186)
                      .+|+|++||++      +.+++.|+|+|+++||++|+.|++++|+.+++|+|||||+                       
T Consensus        81 ~~vsL~~vyql~~~~~~k~~~l~F~fvP~~~qV~~A~~Ll~~~Gq~~~~f~gVPvF~~~~~~~~~~Lti~~~~~~~~~iP  160 (252)
T 4ev1_A           81 TAVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDLLRQSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVP  160 (252)
T ss_dssp             EEEEHHHHHHHHHHTTTCTTCEEEEEECCHHHHHHHHHHHHTTTCCCSCCCSCEEEEEESSTTSCBCCEEETTTTEEEEE
T ss_pred             EEeeHHHHHHHHHhhccCCcCceEEEcCCHHHHHHHHHHHHHcCCCcccCCCccEEEEecCCCCccEEEEeCCCCCEEEe
Confidence            99999999999      5679999999999999999999999999999999999999                       


Q ss_pred             -----HHHHHHHHHHhhhhcccCCCCccCceEEEeHHHHHHhhhcCCCCCcceEEEecCcccccCCCc
Q 029886          120 -----EDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPN  182 (186)
Q Consensus       120 -----edl~~~l~~~~~~~~~~~P~~~~~~I~V~~Le~vi~~m~~~~~~~~~~i~fiPp~~s~~~~~~  182 (186)
                           +||+++|+++++++    |+   ++|+|++|++||++|++++|++|++++||||++|++.--+
T Consensus       161 lFF~KedL~~~l~~~kkq~----P~---~~I~V~~Le~vI~~m~~~~d~~~~~ivfiPs~es~e~i~~  221 (252)
T 4ev1_A          161 LFLSKQDAQGLLGQVKPKH----PK---ADIQVLDIDGVLQTLQDKNDTWLNQVVLVPSPESREYIRT  221 (252)
T ss_dssp             EESSHHHHHHHHHHHTTTC----TT---CEEEEEEHHHHHHHHHHCCCGGGGGEEEECCHHHHHHHHT
T ss_pred             eEecHHHHHHHHHHHHHhC----CC---CcEEEeeHHHHHHHHhcCcccccceEEEECCHHHHHHHHh
Confidence                 99999999999886    76   8999999999999999999999999999999999876433

>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=8.3e-41  Score=287.13  Aligned_cols=162  Identities=22%  Similarity=0.297  Sum_probs=140.0

Q ss_pred             CHHHHHHhcCCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHh-cCcccccCCeEEEEeeccchhhc-
Q 029886            2 SAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKS-MDPAMRKEGSRVVPVPLNKVFQL-   79 (186)
Q Consensus         2 ~~~~I~ekL~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~-~~p~~~~~~~kV~~v~L~~vy~l-   79 (186)
                      ++++|+|||++||||+|||++|+||++++++ . .+++||||++||+++|+++++ ++|+++++ +||++++|++||++ 
T Consensus        66 ~e~~I~EKL~~VPVF~Itn~~G~Pll~~~~~-~-~V~~fF~s~~DA~a~L~el~k~~~~~~~~~-~kV~pvsL~kvy~l~  142 (279)
T 4e6z_A           66 DERPIEEKLEVIPVFLITNYNSSPYIFQENE-K-QVCYMFLCPYDAENMLNDMIKYNGMKYNGN-IKIHNITMKKAYELM  142 (279)
T ss_dssp             --CCHHHHSTTSEEEEEECTTCCBCCEEETT-E-EEEEEESSHHHHHHHHHHHHHHCHHHHTTS-CEEEEEEHHHHHHHH
T ss_pred             cHHhHHHHhcCCCEEEEEcCCCCEEEecCCC-C-eEEEEECCHHHHHHHHHHHHhccCcccccC-ceEEEecHHHHHHHH
Confidence            6899999999999999999999999998654 3 456677999999999999755 55788888 99999999999987 


Q ss_pred             -----------------cccCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCccchH--------------------HHH
Q 029886           80 -----------------KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ--------------------EDL  122 (186)
Q Consensus        80 -----------------~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~GVPlF~--------------------edl  122 (186)
                                       +.+++.|+|+|+++||++|+.++++.|+   .|+|||||+                    |||
T Consensus       143 ~~~~~~~~~~i~~~~~~k~~~l~fr~vP~~~qV~~A~~ll~~~gq---~~~gVPVF~~~~Lti~k~~k~iiPlFF~keDL  219 (279)
T 4e6z_A          143 KEFLQLEKMEVNKEDSKKKQNIYWKLISSKRQLQNALYYLSFTKK---SELMYPVFYAENLYIQKDGSNIIPLFFDLEDL  219 (279)
T ss_dssp             HHHHHHHHC----------CCEEEEEECCHHHHHHHHTTSCTTTS---TTCCSEEEEETTCCEECSSSEEEEEESSHHHH
T ss_pred             hhcccccchhcccccccCCcceeeEecCCHHHHHHHHHHHHhcCC---cCCCccEEEEeeEEEeeCCeEEEeeEecHHHH
Confidence                             3468999999999999999999988876   378999999                    999


Q ss_pred             HHHHHHHhhhhcccCCCCccCceEEEeHHHHHHhhhcCCCCCcceEEEecCcccccC
Q 029886          123 EKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVST  179 (186)
Q Consensus       123 ~~~l~~~~~~~~~~~P~~~~~~I~V~~Le~vi~~m~~~~~~~~~~i~fiPp~~s~~~  179 (186)
                      +++|++++++.    |+..+++|+|++|+++|..|      +|++++||||++|++.
T Consensus       220 ~~~l~q~~~~~----p~~~~~~I~V~~L~~ll~~~------d~~kivFIPs~eSlef  266 (279)
T 4e6z_A          220 KEAIEEQKNKA----LSKVDYKIKVLNMVDLIFTE------DHKKFGFVPSTQSVKY  266 (279)
T ss_dssp             HHHHHHHHTTC----SSCCCCCEEEEEHHHHHTCS------CCTTEEEECCHHHHHH
T ss_pred             HHHHHHhhhcC----CCCCCCceEEEhHHHHHhhC------CcCeEEEECCHHHHHH
Confidence            99999998765    66448999999999999876      4678999999999875

>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}

Probab=99.28  E-value=3.2e-12  Score=108.11  Aligned_cols=93  Identities=18%  Similarity=0.249  Sum_probs=75.5

Q ss_pred             hcCCCcEEEEEcCCCCeEEEEcCC--CCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc--ccc--
Q 029886            9 RLAGVPVYALSNCNEEFVLVSGAK--TGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL--KVN--   82 (186)
Q Consensus         9 kL~~VPVF~vtn~~g~p~l~~~~~--~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l--~~~--   82 (186)
                      .+.|||||.+..+.+..+|+...+  +..++||| |+++|++++|+++++++|+     .+|.+++|+.+++.  +++  
T Consensus       129 ~f~gVPvF~~~~~~~~~~Lti~~~~~~~~~iPlF-F~KedL~~~l~~~kkq~P~-----~~I~V~~Le~vI~~m~~~~d~  202 (252)
T 4ev1_A          129 QFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPLF-LSKQDAQGLLGQVKPKHPK-----ADIQVLDIDGVLQTLQDKNDT  202 (252)
T ss_dssp             CCCSCEEEEEESSTTSCBCCEEETTTTEEEEEEE-SSHHHHHHHHHHHTTTCTT-----CEEEEEEHHHHHHHHHHCCCG
T ss_pred             cCCCccEEEEecCCCCccEEEEeCCCCCEEEeeE-ecHHHHHHHHHHHHHhCCC-----CcEEEeeHHHHHHHHhcCccc
Confidence            456899999997766666655455  56799999 8999999999999999997     68999999999987  222  


Q ss_pred             -CeeEEEecCHHHHHHHHHHHHHcCC
Q 029886           83 -GVAFRLIPESTQVKNALREMEKAGF  107 (186)
Q Consensus        83 -~~~f~~vP~~~qv~~A~~l~~~~g~  107 (186)
                       --.++|||+.+.+++++++.+..++
T Consensus       203 ~~~~ivfiPs~es~e~i~~~~~~~~~  228 (252)
T 4ev1_A          203 WLNQVVLVPSPESREYIRTLPKPPNT  228 (252)
T ss_dssp             GGGGEEEECCHHHHHHHHTSCCCC--
T ss_pred             ccceEEEECCHHHHHHHHhccccCCC
Confidence             2379999999999999998654443

>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}

Probab=98.89  E-value=4.6e-09  Score=89.96  Aligned_cols=87  Identities=15%  Similarity=0.235  Sum_probs=70.0

Q ss_pred             cCCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhccccCeeEEEe
Q 029886           10 LAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLI   89 (186)
Q Consensus        10 L~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~v   89 (186)
                      -.|||||.+.+     +.+. .+++.++|+| |+++|+++.++++++++|. ... .+|.+++|..+..-.. .-.|.||
T Consensus       189 ~~gVPVF~~~~-----Lti~-k~~k~iiPlF-F~keDL~~~l~q~~~~~p~-~~~-~~I~V~~L~~ll~~~d-~~kivFI  258 (279)
T 4e6z_A          189 ELMYPVFYAEN-----LYIQ-KDGSNIIPLF-FDLEDLKEAIEEQKNKALS-KVD-YKIKVLNMVDLIFTED-HKKFGFV  258 (279)
T ss_dssp             TCCSEEEEETT-----CCEE-CSSSEEEEEE-SSHHHHHHHHHHHHTTCSS-CCC-CCEEEEEHHHHHTCSC-CTTEEEE
T ss_pred             CCCccEEEEee-----EEEe-eCCeEEEeeE-ecHHHHHHHHHHhhhcCCC-CCC-CceEEEhHHHHHhhCC-cCeEEEE
Confidence            35799999863     4444 5668899999 8999999999999999997 345 6899999988886532 2368999


Q ss_pred             cCHHHHHHHHHHHHHcCCC
Q 029886           90 PESTQVKNALREMEKAGFS  108 (186)
Q Consensus        90 P~~~qv~~A~~l~~~~g~~  108 (186)
                      |+++.+++++++  +.|..
T Consensus       259 Ps~eSlefi~~l--~~g~~  275 (279)
T 4e6z_A          259 PSTQSVKYLDKL--NIGTK  275 (279)
T ss_dssp             CCHHHHHHHHHH--HHSCC
T ss_pred             CCHHHHHHHHHH--hcCCC
Confidence            999999999998  55553

>2z0r_A Putative uncharacterized protein TTHA0547; alpha/beta protein, structural genomics, unknown function; 2.30A {Thermus thermophilus}

Probab=83.26  E-value=2.4  Score=30.74  Aligned_cols=51  Identities=27%  Similarity=0.322  Sum_probs=40.6

Q ss_pred             CcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEee
Q 029886           13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVP   72 (186)
Q Consensus        13 VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~   72 (186)
                      =|.|.+.+..|+.++..... ++..++| .|.+.|++|+...    |. .  |.+|.+.-
T Consensus         7 g~wY~L~~~~gEhl~L~~lg-~rlAliw-Ts~~~A~~f~~~~----p~-~--Gm~V~~l~   57 (103)
T 2z0r_A            7 GTWYVLEGDPGEHLVVEALG-ERLSGIW-TSRELAEAFLAHH----PH-L--GMRVSALE   57 (103)
T ss_dssp             SCEEEEESSTTCCCEEEETT-EEEEEEB-SCHHHHHHHHHTS----CS-S--CCEEEEEC
T ss_pred             CCEEEecCCcCceeEEeccC-CceEEEE-echHHHHHHHhhC----Cc-c--ccEEeecc
Confidence            48999999899999888664 5667777 9999999999875    87 3  47887653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00