Citrus Sinensis ID: 029896

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPLEL
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEccHHHHHHHHHHcccccEEEEEEEEEEEEEccccccEEEEEEEEcccccccccccEEEEEEEEEEEEcccEEEEEEEEEEEEccHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEccEEEEEEcccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHccccEEEEEEcHHHHHHHHHHHcccccEEEcEEEEEEEEEccccccEEEEEEEEEccHHHHHccccEEEEEEEEEEccccEEEEEEEEEEEEcccccHHHHHHHcHHHcccHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEccccEEEEEccccEEEEEEEcccccc
Coil and Loop (DISEMBL)
mgepidlvkldgtwrlqytsapdVLVLFEAAarlpffkvgqifqkfecrdksdggvicnvvrwsvppllekeegatlvVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQaliapailprsFLSLQILQFIRAFKaqipvtnttpgrrsvgglYYLSyldnnmllgravggggvfvftkaqplel
Flexible Loop (DISEMBL)
mgepidlvkldgtwrlqYTSAPDVLVLFEAAARLPFFKVGQIFQKFEcrdksdggviCNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFkaqipvtnttpgrrsvGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPLEL
Low Complexity Region (SEG)
MGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAvggggvfvfTKAQPLEL
Disordered region (IsUnstruct)
****IDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTK******
Disordered Region (DISOPRED)
***PIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQP***
Disordered Region (DISEMBL)
MGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPLEL
Disordered Region (DISPRO)
**EPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPLEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q8W4F1	284	Probable plastid-lipid-as	yes	no	0.994	0.647	0.836	8e-89
O82291	376	Probable plastid-lipid-as	no	no	0.848	0.417	0.276	6e-05
Q94KU5	360	Plastid lipid-associated	N/A	no	0.843	0.433	0.296	0.0001
Q9LW57	284	Probable plastid-lipid-as	no	no	0.767	0.5	0.285	0.0002

>sp|Q8W4F1|PAP10_ARATH Probable plastid-lipid-associated protein 10, chloroplastic OS=Arabidopsis thaliana GN=PAP10 PE=1 SV=1

 Score =  325 bits (834), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 154/184 (83%), Positives = 174/184 (94%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
           GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SDGG+I NVV
Sbjct: 101 GEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSDGGIIRNVV 160

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           +WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE++V+NI I+E+LQALIAPAILPRS
Sbjct: 161 QWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALIAPAILPRS 220

Query: 122 FLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQ 181
           FLSLQ+LQFIR FKAQIPV  T+PGRRSVGGLYYLSYLDNNMLLGR+VGGGGVFVFTK+Q
Sbjct: 221 FLSLQLLQFIRTFKAQIPVNATSPGRRSVGGLYYLSYLDNNMLLGRSVGGGGVFVFTKSQ 280

Query: 182 PLEL 185
           PLEL
Sbjct: 281 PLEL 284

Arabidopsis thaliana (taxid: 3702)

>sp|O82291|PAP3_ARATH Probable plastid-lipid-associated protein 3, chloroplastic OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 77/181 (42%), Gaps = 24/181 (13%)

Query: 10  LDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLL 69
           LDG W L YT+  +++ L  AA   P  KV  I Q  +  +     +I N    S P   
Sbjct: 201 LDGNWVLLYTAFSELIPLL-AAGSTPLLKVKSISQSIDTNNL----IIDNSTTLSSP--- 252

Query: 70  EKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQ---------ALIAPAILPR 120
                 +   +A F+V S   I + F+E T++   I   +            I+ ++L +
Sbjct: 253 --FADFSFSATASFEVRSPSRIEVSFKEGTLKPPVIKSSVDLPESVGVFGQQISLSLLKQ 310

Query: 121 SFLSLQIL--QFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFT 178
           S   LQ +     RA   Q P+    PG R    L   +YLD ++ + R  G GG+FV  
Sbjct: 311 SLNPLQDVAANISRALSGQPPLKLPFPGNRGSSWLLT-TYLDKDLRISR--GDGGLFVLA 367

Query: 179 K 179
           +
Sbjct: 368 R 368

Arabidopsis thaliana (taxid: 3702)

>sp|Q94KU5|PAP3_BRACM Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris GN=PAP3 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 80/182 (43%), Gaps = 26/182 (14%)

Query: 10  LDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLL 69
           LDG W L YT+  ++L L  AA   P  KV  I Q  + +  S    I N    S P   
Sbjct: 185 LDGNWVLLYTAFSELLPLL-AAGSTPLLKVKSISQSIDTKSLS----IDNSTTLSSP--- 236

Query: 70  EKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPR----SFL-- 123
                 +   +A F+V +   I + F+E T++   I   +    +  +  +    SFL  
Sbjct: 237 --FADFSFSATASFEVRTPSRIEVSFKEGTLKPPEIKSSVDLPESVGVFGQEINLSFLKQ 294

Query: 124 SLQILQFI-----RAFKAQIPVTNTTPGRRSVGGLYYL-SYLDNNMLLGRAVGGGGVFVF 177
           SL  LQ +     RA   Q P+    PG R  G  + L +YLD ++ + R  G GG+FV 
Sbjct: 295 SLNPLQDVAANISRAISGQPPLKLPFPGNR--GSSWLLTTYLDKDLRISR--GDGGLFVL 350

Query: 178 TK 179
            +
Sbjct: 351 AR 352

Brassica campestris (taxid: 3711)

>sp|Q9LW57|PAP6_ARATH Probable plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana GN=PAP6 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 40/182 (21%)

Query: 2   GEPIDLV----KLDGTWRLQYTSAPDVLVLFEAAARLPFFK-----VGQIFQKFECRDKS 52
           G P+DL     KL G WRL Y+SA     L  +   LP  +     +GQ+FQ+ +   K 
Sbjct: 123 GGPVDLTDDLDKLQGKWRLLYSSAFSSRSLGGSRPGLPTGRLIPVTLGQVFQRIDVFSK- 181

Query: 53  DGGVICNV---VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEEL 109
           D   I  V     W  PPL      AT  ++ KF+++    I + FE+ TV+      ++
Sbjct: 182 DFDNIAEVELGAPWPFPPL-----EATATLAHKFELLGTCKIKITFEKTTVKTSGNLSQI 236

Query: 110 QALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAV 169
                P  LP SF                P +N  PG     G + ++Y+D+ M + R  
Sbjct: 237 PPFDIPR-LPDSFR---------------PSSN--PGT----GDFEVTYVDDTMRITRGD 274

Query: 170 GG 171
            G
Sbjct: 275 RG 276

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
297824781	283	plastid-lipid associated protein pap [Ar	0.994	0.650	0.842	9e-88
18407205	284	putative plastid-lipid-associated protei	0.994	0.647	0.836	4e-87
21553852	284	unknown [Arabidopsis thaliana]	0.994	0.647	0.836	4e-87
255548157	285	structural molecule, putative [Ricinus c	1.0	0.649	0.811	3e-85
388510882	271	unknown [Lotus japonicus]	0.972	0.664	0.818	2e-80
356521622	276	PREDICTED: probable plastid-lipid-associ	0.972	0.652	0.802	4e-80
449453338	278	PREDICTED: probable plastid-lipid-associ	0.989	0.658	0.777	5e-79
88175353	279	fibrillin 8 [Coffea canephora]	0.983	0.652	0.771	1e-77
225453694	278	PREDICTED: probable plastid-lipid-associ	0.967	0.643	0.796	2e-77
326503400	280	predicted protein [Hordeum vulgare subsp	0.972	0.642	0.747	1e-73

>gi|297824781|ref|XP_002880273.1| plastid-lipid associated protein pap [Arabidopsis lyrata subsp. lyrata] gi|297326112|gb|EFH56532.1| plastid-lipid associated protein pap [Arabidopsis lyrata subsp. lyrata]

 Score =  327 bits (839), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 155/184 (84%), Positives = 175/184 (95%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
           GE IDLVKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SDGG+I NVV
Sbjct: 100 GEEIDLVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSDGGIIRNVV 159

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           +WS+P LLE++EGATLVV+AKFD V  RNIYLQFEE++V+NI I+E+LQALIAPAILPRS
Sbjct: 160 QWSLPSLLEEQEGATLVVTAKFDKVCSRNIYLQFEEISVRNININEQLQALIAPAILPRS 219

Query: 122 FLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQ 181
           FLSLQ+LQFIR FKAQIPVT T+PGRRSVGGLYYLSYLDNNMLLGR+VGGGGVFVFTK+Q
Sbjct: 220 FLSLQLLQFIRTFKAQIPVTATSPGRRSVGGLYYLSYLDNNMLLGRSVGGGGVFVFTKSQ 279

Query: 182 PLEL 185
           PLEL
Sbjct: 280 PLEL 283

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18407205|ref|NP_566091.1| putative plastid-lipid-associated protein 10 [Arabidopsis thaliana] gi|75162466|sp|Q8W4F1.1|PAP10_ARATH RecName: Full=Probable plastid-lipid-associated protein 10, chloroplastic; AltName: Full=Fibrillin-10; Flags: Precursor gi|17065042|gb|AAL32675.1| Unknown protein [Arabidopsis thaliana] gi|20197139|gb|AAC34229.2| Expressed protein [Arabidopsis thaliana] gi|20259994|gb|AAM13344.1| unknown protein [Arabidopsis thaliana] gi|330255676|gb|AEC10770.1| putative plastid-lipid-associated protein 10 [Arabidopsis thaliana]

 Score =  325 bits (834), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 154/184 (83%), Positives = 174/184 (94%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
           GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SDGG+I NVV
Sbjct: 101 GEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSDGGIIRNVV 160

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           +WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE++V+NI I+E+LQALIAPAILPRS
Sbjct: 161 QWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALIAPAILPRS 220

Query: 122 FLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQ 181
           FLSLQ+LQFIR FKAQIPV  T+PGRRSVGGLYYLSYLDNNMLLGR+VGGGGVFVFTK+Q
Sbjct: 221 FLSLQLLQFIRTFKAQIPVNATSPGRRSVGGLYYLSYLDNNMLLGRSVGGGGVFVFTKSQ 280

Query: 182 PLEL 185
           PLEL
Sbjct: 281 PLEL 284

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553852|gb|AAM62945.1| unknown [Arabidopsis thaliana]

 Score =  325 bits (834), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 154/184 (83%), Positives = 174/184 (94%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
           GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SDGG+I NVV
Sbjct: 101 GEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSDGGIIRNVV 160

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           +WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE++V+NI I+E+LQALIAPAILPRS
Sbjct: 161 QWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALIAPAILPRS 220

Query: 122 FLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQ 181
           FLSLQ+LQFIR FKAQIPV  T+PGRRSVGGLYYLSYLDNNMLLGR+VGGGGVFVFTK+Q
Sbjct: 221 FLSLQLLQFIRTFKAQIPVNATSPGRRSVGGLYYLSYLDNNMLLGRSVGGGGVFVFTKSQ 280

Query: 182 PLEL 185
           PLEL
Sbjct: 281 PLEL 284

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548157|ref|XP_002515135.1| structural molecule, putative [Ricinus communis] gi|223545615|gb|EEF47119.1| structural molecule, putative [Ricinus communis]

 Score =  319 bits (817), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 151/186 (81%), Positives = 172/186 (92%), Gaps = 1/186 (0%)

Query: 1   MGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNV 60
           +G PIDLVKLDGTWRLQYTSAPDVL+L E++ARLPF +VGQIFQKFECRD+S GG+I NV
Sbjct: 100 VGAPIDLVKLDGTWRLQYTSAPDVLILLESSARLPFLQVGQIFQKFECRDQSSGGIIRNV 159

Query: 61  VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPR 120
           VRWS+P + E+++GATL+VSAKFDVVS RNIYLQFEE+++QNI ISEE+QALIAPAILPR
Sbjct: 160 VRWSIPTVFEEQDGATLLVSAKFDVVSARNIYLQFEEISIQNIKISEEVQALIAPAILPR 219

Query: 121 SFLSLQILQFIRAFKAQIPVTNT-TPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTK 179
           SF SLQILQFIRAFKAQIPV N   PGRR+VGGLYYLSYLDNNM+LGRAVGGGG+FVFTK
Sbjct: 220 SFFSLQILQFIRAFKAQIPVRNPGNPGRRAVGGLYYLSYLDNNMILGRAVGGGGIFVFTK 279

Query: 180 AQPLEL 185
           AQPL+L
Sbjct: 280 AQPLDL 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510882|gb|AFK43507.1| unknown [Lotus japonicus]

 Score =  303 bits (776), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 149/182 (81%), Positives = 171/182 (93%), Gaps = 2/182 (1%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
           G+PI+L KLDGTWRLQYTSA DVLVLFEAAARLPFF+VGQIFQKFECRD+S+GGVI NVV
Sbjct: 91  GDPINLNKLDGTWRLQYTSAFDVLVLFEAAARLPFFQVGQIFQKFECRDESNGGVIRNVV 150

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           RWSVP LLE+++GATL+VSAKF VVSVRNIY QF+E+T+Q+I I+E+LQALIAPA+LPRS
Sbjct: 151 RWSVPNLLEEQDGATLLVSAKFTVVSVRNIYPQFQEITLQDININEQLQALIAPALLPRS 210

Query: 122 FLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQ 181
           +LSLQILQF+RAFKAQIPV +  PGR+SVGGLYYLSYLD+NMLLGRAVGGGGVFVFT+AQ
Sbjct: 211 YLSLQILQFLRAFKAQIPVRD--PGRQSVGGLYYLSYLDDNMLLGRAVGGGGVFVFTRAQ 268

Query: 182 PL 183
            L
Sbjct: 269 SL 270

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521622|ref|XP_003529453.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic-like [Glycine max]

 Score =  302 bits (773), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 146/182 (80%), Positives = 167/182 (91%), Gaps = 2/182 (1%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
             PI+L  LDGTWRLQYTSA DVL+L +AAA LPFF+VGQIFQKFECRD+S+GGVI NVV
Sbjct: 96  SHPINLSNLDGTWRLQYTSASDVLILLQAAATLPFFQVGQIFQKFECRDQSNGGVIRNVV 155

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           RWS+P LLE++EGATL+VSAKF+VVSVRNIYLQF+E+T+Q+I ISEELQALIAPAILPRS
Sbjct: 156 RWSIPNLLEEQEGATLLVSAKFNVVSVRNIYLQFQEITIQDINISEELQALIAPAILPRS 215

Query: 122 FLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQ 181
           F+SLQILQF+R FKAQIPV +  PGR+SVGGLYYLSYLD+NMLLGRAVGGGGVFVFT+AQ
Sbjct: 216 FISLQILQFLRTFKAQIPVRD--PGRQSVGGLYYLSYLDDNMLLGRAVGGGGVFVFTRAQ 273

Query: 182 PL 183
            L
Sbjct: 274 SL 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453338|ref|XP_004144415.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic-like [Cucumis sativus] gi|449500056|ref|XP_004160991.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic-like [Cucumis sativus]

 Score =  298 bits (764), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 143/184 (77%), Positives = 166/184 (90%), Gaps = 1/184 (0%)

Query: 1   MGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNV 60
           MG PIDL+KLDGTWRLQYTSAPDVL+L EAA RLPFF++GQIFQKFEC+D S+ G++ NV
Sbjct: 95  MGLPIDLMKLDGTWRLQYTSAPDVLILLEAADRLPFFQIGQIFQKFECQDSSNEGIVRNV 154

Query: 61  VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPR 120
           VRWS+P LLE++EGATL+VSAKF VVS+RNIYL+FEE++VQNI ISE+LQALIAPAILPR
Sbjct: 155 VRWSIPSLLEEQEGATLLVSAKFSVVSLRNIYLEFEEISVQNIKISEQLQALIAPAILPR 214

Query: 121 SFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKA 180
           SFLSLQILQF+R+F+  +PV N+    R VGGLYYLSYLD NMLLGRAVGGGGVFVFTKA
Sbjct: 215 SFLSLQILQFLRSFQVGVPVRNSGSS-RGVGGLYYLSYLDGNMLLGRAVGGGGVFVFTKA 273

Query: 181 QPLE 184
           QPL+
Sbjct: 274 QPLQ 277

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|88175353|gb|ABD39695.1| fibrillin 8 [Coffea canephora]

 Score =  294 bits (752), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 142/184 (77%), Positives = 163/184 (88%), Gaps = 2/184 (1%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
           GE IDL +LDGTWRLQYTSAPDVL+LFE+A+RLPFF+VGQ+FQKFEC+D+S+GGV+ N+V
Sbjct: 98  GEAIDLGELDGTWRLQYTSAPDVLILFESASRLPFFQVGQVFQKFECQDESNGGVVRNIV 157

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           +WS+P LLE++EGATL+VSAKF VVS RNIY QFEE+    I ISEELQALIAPAILPRS
Sbjct: 158 KWSIPSLLEEQEGATLLVSAKFSVVSSRNIYFQFEEIAFNKINISEELQALIAPAILPRS 217

Query: 122 FLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQ 181
           F+SLQILQFIRAFKA+ PV N  PGR SVGGLYYLSYLD  MLLGRAVGGGGVFVFT+AQ
Sbjct: 218 FISLQILQFIRAFKAEFPVRN--PGRNSVGGLYYLSYLDRYMLLGRAVGGGGVFVFTRAQ 275

Query: 182 PLEL 185
            + L
Sbjct: 276 AIVL 279

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453694|ref|XP_002270341.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic [Vitis vinifera] gi|296089046|emb|CBI38749.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 145/182 (79%), Positives = 162/182 (89%), Gaps = 3/182 (1%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
           G PIDL KLDGTWRLQYTSAPDVLVL E+AAR  FF+VGQIFQKFEC+++S  GV+ NVV
Sbjct: 99  GVPIDLGKLDGTWRLQYTSAPDVLVLLESAARFSFFQVGQIFQKFECQNQSKEGVVRNVV 158

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           RWS+PPLLE++EGATL+VSAKF VVS RNIYLQFEE+++Q+I ISEELQALIAPAILPRS
Sbjct: 159 RWSIPPLLEEQEGATLLVSAKFSVVSARNIYLQFEEISIQSINISEELQALIAPAILPRS 218

Query: 122 FLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQ 181
           FLSLQILQFIR FKA+IPV N   GRRSVGGLYYLSYLD NMLLGRA   GG+FVFT+AQ
Sbjct: 219 FLSLQILQFIRTFKAEIPVRNQ--GRRSVGGLYYLSYLDANMLLGRA-AAGGIFVFTRAQ 275

Query: 182 PL 183
           PL
Sbjct: 276 PL 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326503400|dbj|BAJ86206.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326511325|dbj|BAJ87676.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 136/182 (74%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
           G P+DL  LDGTWRL YTSA DVLVLFEAA RLP  +VGQI+QKFEC+ +SDGG++ NVV
Sbjct: 100 GTPLDLAALDGTWRLCYTSASDVLVLFEAAERLPLLQVGQIYQKFECKGRSDGGIVRNVV 159

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           RWS+  LLE++EGATL+VSAKFDV+S RNI+LQFEEV V+NI ISE+LQALIAPAILPRS
Sbjct: 160 RWSIENLLEEQEGATLMVSAKFDVLSKRNIFLQFEEVAVENIKISEQLQALIAPAILPRS 219

Query: 122 FLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQ 181
           F SLQILQF++ F+AQ+PV    P RRS GGLYYLSYLD +MLLGR+VGGGGVFVFT+AQ
Sbjct: 220 FFSLQILQFLKTFRAQVPVGG--PERRSPGGLYYLSYLDRDMLLGRSVGGGGVFVFTRAQ 277

Query: 182 PL 183
           PL
Sbjct: 278 PL 279

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2041454	284	AT2G46910 [Arabidopsis thalian	0.994	0.647	0.788	8.4e-74
TAIR|locus:2090890	284	FIB4 "fibrillin 4" [Arabidopsi	0.616	0.401	0.330	0.00058

TAIR|locus:2041454 AT2G46910 [Arabidopsis thaliana (taxid:3702)]

 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 145/184 (78%), Positives = 165/184 (89%)

Query:     2 GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
             GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SDGG+I NVV
Sbjct:   101 GEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSDGGIIRNVV 160

Query:    62 RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
             +WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE++V+NI I+E+LQALIAPAILPRS
Sbjct:   161 QWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALIAPAILPRS 220

Query:   122 FLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAXXXXXXXXXTKAQ 181
             FLSLQ+LQFIR FKAQIPV  T+PGRRSVGGLYYLSYLDNNMLLGR+         TK+Q
Sbjct:   221 FLSLQLLQFIRTFKAQIPVNATSPGRRSVGGLYYLSYLDNNMLLGRSVGGGGVFVFTKSQ 280

Query:   182 PLEL 185
             PLEL
Sbjct:   281 PLEL 284

GO:0005198 "structural molecule activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0010287 "plastoglobule" evidence=IDA

TAIR|locus:2090890 FIB4 "fibrillin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 0.00058, P = 0.00058
 Identities = 44/133 (33%), Positives = 61/133 (45%)

Query:     2 GEPIDLV----KLDGTWRLQYTSAPDVLVLFEAAARLPFFKV-----GQIFQKFECRDKS 52
             G P+DL     KL G WRL Y+SA     L  +   LP  ++     GQ+FQ+ +   K 
Sbjct:   123 GGPVDLTDDLDKLQGKWRLLYSSAFSSRSLGGSRPGLPTGRLIPVTLGQVFQRIDVFSK- 181

Query:    53 DGGVICNV---VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEEL 109
             D   I  V     W  PPL   E  ATL  + KF+++    I + FE+ TV+      ++
Sbjct:   182 DFDNIAEVELGAPWPFPPL---EATATL--AHKFELLGTCKIKITFEKTTVKTSGNLSQI 236

Query:   110 QALIAPAILPRSF 122
                  P  LP SF
Sbjct:   237 PPFDIPR-LPDSF 248


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.140   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      185       176   0.00081  109 3  11 22  0.37    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  141 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.29u 0.14s 14.43t   Elapsed:  00:00:00
  Total cpu time:  14.29u 0.14s 14.43t   Elapsed:  00:00:00
  Start:  Thu May  9 23:40:34 2013   End:  Thu May  9 23:40:34 2013

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0010193 "response to ozone" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W4F1	PAP10_ARATH	No assigned EC number	0.8369	0.9945	0.6478	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	1e-15

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score = 71.0 bits (174), Expect = 1e-15
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 23/172 (13%)

Query: 6   DLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSV 65
            L  L+G WRL YT++ ++L L  A  RLP  KVGQI+Q  +  + +    + N V +S 
Sbjct: 47  SLDLLNGKWRLLYTTSKELLPLL-ARGRLPLLKVGQIYQTIDVNNLT----VYNSVTFSG 101

Query: 66  PPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSL 125
           P         +  V AKF++ S + + ++FE   +                    + L  
Sbjct: 102 PLAE-----GSFSVRAKFEIRSPKRVQIRFERGVLG----------TPQLLKGSLTPLQ- 145

Query: 126 QILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVF 177
                IR   +Q+P+     G R+ G L   +YLD ++ + R   GG +FV 
Sbjct: 146 DTASNIRGISSQLPLPFPLSGDRAKGWL-ETTYLDEDLRISRG-DGGSLFVL 195

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	100.0
PF14869	133	DUF4488: Domain of unknown function (DUF4488)	82.57

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=100.00  E-value=5.9e-32  Score=219.76  Aligned_cols=154  Identities=32%  Similarity=0.595  Sum_probs=112.6

Q ss_pred             CCCCc-CCcccEEEEEEecCcchhhHHHhhhcCCceeeceeeEEEeeecCCCCceEEEEEEcCC-CcccccccCeEEEEE
Q 029896            3 EPIDL-VKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSV-PPLLEKEEGATLVVS   80 (185)
Q Consensus         3 ~p~~~-~~L~G~WrL~yTt~~~~~~ll~~~~~lp~~~~g~i~Q~Id~~~~~~~~~v~N~v~~~~-p~~~~~~~g~~l~v~   80 (185)
                      .|+++ ++|+|+|+|+|||+.+..++++. +++|++++|++||+||+    +++++.|+++|.. |..    . ..+.+.
T Consensus        43 ~p~~s~~~L~G~W~Lvytt~~~~~~~l~~-~~~~~~~~~~v~Q~id~----~~~~~~N~v~~~~~~~~----~-~~~~v~  112 (198)
T PF04755_consen   43 DPADSLPLLDGRWELVYTTSPEIRSLLQR-GRLPGVRVGRVFQTIDA----DNGRVENVVELSGFPLL----E-GSVSVR  112 (198)
T ss_pred             CCcCCchhcCcEEEEEeecCCCccccccc-cccccccccceEEEEEC----CCceEEEEEEEeccCce----E-EEEEEE
Confidence            56666 89999999999999998877652 56778899999999996    4889999999875 543    2 489999


Q ss_pred             EEEEEccCceEEEEEEEEEEeeecccHHHHhhcCCccCccchhhHHHHHHHhhhhhcCCcccCCCCCCCcceEEEEEEec
Q 029896           81 AKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLD  160 (185)
Q Consensus        81 A~~e~~s~~Ri~v~F~~~~l~~~~i~~~~~~ll~~~~~p~~~~~~q~~~~~~~~~~~~Pl~~~~~g~~~~~Gwld~TYLD  160 (185)
                      |++++.+++|+.++|+++.+++..+.   +.++.+  +...+.     .+-+.....+|++.+.++. .++|||||||||
T Consensus       113 a~~~~~~~~rv~v~f~~~~l~~~~~l---~~~l~~--~~~~~~-----~v~~~~~~~~~~~~~~~~~-~~~g~l~~tYLD  181 (198)
T PF04755_consen  113 ASLEVRSPRRVEVTFERASLKPPSLL---KGVLGP--LKDALN-----NVPRGISDELPVPLPLPGG-SPKGWLDTTYLD  181 (198)
T ss_pred             EEEEEccccEEEEEEEeeEEccccee---eccchh--hhhhhh-----hcccccccccccccccCCC-CCceEEEEEEEC
Confidence            99999999999999999999653321   000100  000000     0001112345555555543 478999999999


Q ss_pred             CCeEEEeecCCCcEEEEE
Q 029896          161 NNMLLGRAVGGGGVFVFT  178 (185)
Q Consensus       161 edlRI~Rg~d~G~vFVl~  178 (185)
                      |||||+||+ +|++|||.
T Consensus       182 edlRI~Rg~-~G~~fVl~  198 (198)
T PF04755_consen  182 EDLRISRGN-KGSLFVLK  198 (198)
T ss_pred             CCeEEEEcC-CCCEEEeC
Confidence            999999995 99999984

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

>PF14869 DUF4488: Domain of unknown function (DUF4488)

Probab=82.57  E-value=12  Score=29.23  Aligned_cols=62  Identities=23%  Similarity=0.408  Sum_probs=41.1

Q ss_pred             CcccEEEEE-EecCc-chhhHHHhhhcCCceeeceeeEEEeeecCCCCceEEEEEEcCCCcccccccCeEEEEEEEEEEc
Q 029896            9 KLDGTWRLQ-YTSAP-DVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVV   86 (185)
Q Consensus         9 ~L~G~WrL~-yTt~~-~~~~ll~~~~~lp~~~~g~i~Q~Id~~~~~~~~~v~N~v~~~~p~~~~~~~g~~l~v~A~~e~~   86 (185)
                      -|.|-|+|. |-+.. ++-+      .   ++.+.++-++.     +++++.|+.-...       .|+.++..++|+..
T Consensus         2 ~l~GVWQ~c~~~~~~~~~~g------~---l~~~~~lKilS-----~Dgtf~Ni~~~~~-------~~aiIt~~GtY~~~   60 (133)
T PF14869_consen    2 SLQGVWQLCHYVSESPEVPG------K---LKPSNVLKILS-----DDGTFVNITMIPK-------SGAIITGYGTYEQP   60 (133)
T ss_pred             CceEEEEEEEEeecCcccCc------e---EeecccEEEEc-----CCCcEEEEEEeCC-------CCcEEEEeEEEEEc
Confidence            378999999 55443 3211      1   23344455555     5899999988532       24678889999999


Q ss_pred             cCceE
Q 029896           87 SVRNI   91 (185)
Q Consensus        87 s~~Ri   91 (185)
                      ++...
T Consensus        61 sD~~Y   65 (133)
T PF14869_consen   61 SDNIY   65 (133)
T ss_pred             CCccc
Confidence            88733

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
4gzv_A	142	Hypothetical protein; AN eight-stranded beta barre	88.08

>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}

Probab=88.08  E-value=7.3  Score=29.67  Aligned_cols=68  Identities=21%  Similarity=0.349  Sum_probs=47.2

Q ss_pred             CCCCcCCcccEEEEE-EecCcchhhHHHhhhcCCc-eeeceeeEEEeeecCCCCceEEEEEEcCCCcccccccCeEEEEE
Q 029896            3 EPIDLVKLDGTWRLQ-YTSAPDVLVLFEAAARLPF-FKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVS   80 (185)
Q Consensus         3 ~p~~~~~L~G~WrL~-yTt~~~~~~ll~~~~~lp~-~~~g~i~Q~Id~~~~~~~~~v~N~v~~~~p~~~~~~~g~~l~v~   80 (185)
                      +.....-|.|-|+|. |-+...         ..|+ ++.+..+-+|.     ++|++.|++-..  .     .++.+...
T Consensus         5 ~~~~~~~L~GvWQ~c~y~~~~~---------~~~~~l~~s~~~KIlS-----~DgtF~N~~m~~--~-----~~aiIt~y   63 (142)
T 4gzv_A            5 TKFKAADLKGIWQLCHYVSESP---------DVPGALKPSNTFKVLS-----DDGRIVNFTIIP--G-----ADAIITGY   63 (142)
T ss_dssp             CGGGSCCCCEEEEEEEEEESST---------TSCCEEEEEEEEEEEC-----TTSEEEEEECCT--T-----SCCEEEEE
T ss_pred             cccccccceEEeEEeeEeecCC---------CCCceEeecCceEEEC-----CCCcEEEEEEeC--C-----CCcEEEEe
Confidence            445667899999988 444432         2233 45566677666     589999999543  2     24678899


Q ss_pred             EEEEEccCceE
Q 029896           81 AKFDVVSVRNI   91 (185)
Q Consensus        81 A~~e~~s~~Ri   91 (185)
                      ++|+..|++..
T Consensus        64 GtY~l~SD~~Y   74 (142)
T 4gzv_A           64 GTYKQLTDDSY   74 (142)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEecCCCee
Confidence            99999999843

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00