Citrus Sinensis ID: 029898

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MDEDEMEELDNKKDYDVEYDPLVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV
Secondary Structure (PSIPRED)
ccHHHHHHHccccccccccccccccccccEEEEEEccEEEEcccccccEEEEEccccccEEEEEEEccEEEEccccccccccccEEEEccccccccccccccccccccccHHcccccccEEEccccccccccccccHHHHHHHHHEEEEccccccccccccEEEccEEEEEEccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccccccccccccccccccEEEEEcccEEEEccccccEEEEEEEcHHHHEEEEEEcccEEEEcccccccccccHHEEEcccccccEEEccHHccccccccEEEccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEHcEEEEEEccccEEEEEEEEc
Coil and Loop (DISEMBL)
MDEDEMeeldnkkdydveydplvaggdeditmvdsksfvytqgwdsetvvdyridedefhkislmecdffirkppdpdndvydfremyvtppdtdiyaipkvlapmpqkyircavsdygcynvteppidaprdpmykseREIHKVFLVKHyrnrrlgdpefvlDFEEIYVIDSKTKSITRAKVLV
Flexible Loop (DISEMBL)
mdedemeeldnkkdydveydplvaggdeditmVDSKSFvytqgwdseTVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFlvkhyrnrrlgdpefvldfeeiyvidsktksitrakvlv
Low Complexity Region (SEG)
MDEDEMEELDNKKDYDVEYDPLVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV
Disordered region (IsUnstruct)
****************VEYDPLVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPID******YKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSK***********
Disordered Region (DISOPRED)
**********NKKDYDVEYDPLVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV
Disordered Region (DISEMBL)
**********NKKDYDVEYDPLVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV
Disordered Region (DISPRO)
*****MEELDNKKDYDVEYDPLVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDEDEMEELDNKKDYDVEYDPLVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
317106688	332	JMS09K11.8 [Jatropha curcas]	1.0	0.557	0.858	2e-88
255558568	327	conserved hypothetical protein [Ricinus	0.945	0.535	0.853	4e-84
297850594	328	hypothetical protein ARALYDRAFT_472396 [	1.0	0.564	0.812	5e-84
18395008	328	plastid transcriptionally active 6 [Arab	1.0	0.564	0.802	8e-83
224063005	325	predicted protein [Populus trichocarpa]	1.0	0.569	0.832	3e-82
225459665	333	PREDICTED: uncharacterized protein LOC10	0.945	0.525	0.844	8e-82
449500699	337	PREDICTED: uncharacterized protein LOC10	0.945	0.519	0.8	1e-81
356510055	328	PREDICTED: uncharacterized protein LOC10	0.956	0.539	0.790	3e-80
356515939	329	PREDICTED: uncharacterized protein LOC10	0.956	0.537	0.8	9e-77
302141763	221	unnamed protein product [Vitis vinifera]	0.832	0.696	0.889	2e-75

>gi|317106688|dbj|BAJ53190.1| JMS09K11.8 [Jatropha curcas]

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 164/191 (85%), Positives = 176/191 (92%), Gaps = 6/191 (3%)

Query: 1   MDEDEMEELDNKKDYDVEYDP--LVA----GGDEDITMVDSKSFVYTQGWDSETVVDYRI 54
           MDE+E EE+DNKKDYD++YDP  +VA    GGDEDI MV SKSFV TQGWDSE +VDYRI
Sbjct: 75  MDEEEAEEVDNKKDYDLDYDPSAVVAAANVGGDEDIAMVISKSFVSTQGWDSEKIVDYRI 134

Query: 55  DEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCA 114
           DE+EFHKISL++CDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCA
Sbjct: 135 DEEEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCA 194

Query: 115 VSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSK 174
           +SDYG YNVTEPPIDAPRDP+YKSEREI KVFL KHYRNRR GDPEFVLDFEEIYVIDSK
Sbjct: 195 MSDYGRYNVTEPPIDAPRDPLYKSEREILKVFLTKHYRNRRFGDPEFVLDFEEIYVIDSK 254

Query: 175 TKSITRAKVLV 185
           TKSITRAKV+V
Sbjct: 255 TKSITRAKVVV 265

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558568|ref|XP_002520309.1| conserved hypothetical protein [Ricinus communis] gi|223540528|gb|EEF42095.1| conserved hypothetical protein [Ricinus communis]

 Score =  315 bits (808), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 151/177 (85%), Positives = 163/177 (92%), Gaps = 2/177 (1%)

Query: 11  NKKDYDVEYDP--LVAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECD 68
           NKKDYD++YDP  + +GGDE I MVDSKSFV TQGWDSE +VDYRIDEDEFHKISL++CD
Sbjct: 84  NKKDYDLDYDPSSVASGGDEVIAMVDSKSFVSTQGWDSEKIVDYRIDEDEFHKISLLDCD 143

Query: 69  FFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPI 128
           FFIRKPPDPDNDVYDFREMYVTPPDTD+YAIP+VLAPMPQKYIRC +SDYG YN TEPPI
Sbjct: 144 FFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPRVLAPMPQKYIRCGMSDYGRYNFTEPPI 203

Query: 129 DAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV 185
           DAPRDPMY SE+EI KVFL KHYRNRR GDPEFVLDFEEIYVIDSKTKSITRAKV+V
Sbjct: 204 DAPRDPMYSSEKEILKVFLTKHYRNRRFGDPEFVLDFEEIYVIDSKTKSITRAKVVV 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850594|ref|XP_002893178.1| hypothetical protein ARALYDRAFT_472396 [Arabidopsis lyrata subsp. lyrata] gi|297339020|gb|EFH69437.1| hypothetical protein ARALYDRAFT_472396 [Arabidopsis lyrata subsp. lyrata]

 Score =  315 bits (807), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 156/192 (81%), Positives = 168/192 (87%), Gaps = 7/192 (3%)

Query: 1   MDEDEMEELDNKKDYDVEYDPLVAGGDEDIT-------MVDSKSFVYTQGWDSETVVDYR 53
           MD++E+EE+DNKKDYDVEYDPL A               V SKSF+ TQGWDSE VVDYR
Sbjct: 70  MDDEEVEEVDNKKDYDVEYDPLAAAMAAAGGGGDGDIAFVQSKSFISTQGWDSEMVVDYR 129

Query: 54  IDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRC 113
           I+EDEFHKISLM+CDFFIRKPPDPDNDVYDFREMYVTPPDTDIY+IP+VLAPMPQKYIRC
Sbjct: 130 INEDEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRC 189

Query: 114 AVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDS 173
           A+SDYGCYNVTEPPIDAPRDP+YKSEREI KVFL KHYRNRR  DPEFVLD EEIYVIDS
Sbjct: 190 AMSDYGCYNVTEPPIDAPRDPLYKSEREISKVFLTKHYRNRRTNDPEFVLDLEEIYVIDS 249

Query: 174 KTKSITRAKVLV 185
           KTKSITRA+VLV
Sbjct: 250 KTKSITRARVLV 261

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395008|ref|NP_564144.1| plastid transcriptionally active 6 [Arabidopsis thaliana] gi|79318316|ref|NP_001031076.1| plastid transcriptionally active 6 [Arabidopsis thaliana] gi|5263310|gb|AAD41412.1|AC007727_1 EST gb|N95925 comes from this gene [Arabidopsis thaliana] gi|11692926|gb|AAG40066.1|AF324715_1 At1g21600 [Arabidopsis thaliana] gi|11908094|gb|AAG41476.1|AF326894_1 unknown protein [Arabidopsis thaliana] gi|17386146|gb|AAL38619.1|AF446886_1 At1g21600/F24J8.10 [Arabidopsis thaliana] gi|15450597|gb|AAK96570.1| At1g21600/F24J8.10 [Arabidopsis thaliana] gi|21280837|gb|AAM44921.1| unknown protein [Arabidopsis thaliana] gi|222423451|dbj|BAH19696.1| AT1G21600 [Arabidopsis thaliana] gi|332192001|gb|AEE30122.1| plastid transcriptionally active 6 [Arabidopsis thaliana] gi|332192002|gb|AEE30123.1| plastid transcriptionally active 6 [Arabidopsis thaliana]

 Score =  311 bits (797), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 154/192 (80%), Positives = 168/192 (87%), Gaps = 7/192 (3%)

Query: 1   MDEDEMEELDNKKDYDVEYDPLVAGGDEDIT-------MVDSKSFVYTQGWDSETVVDYR 53
           MD++E+EE+DNKKDYDVEYDPL A               V SKSF+ TQGWDS+ VVDYR
Sbjct: 70  MDDEEVEEVDNKKDYDVEYDPLAAAIAAAGGGGDGDIAFVQSKSFISTQGWDSDMVVDYR 129

Query: 54  IDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRC 113
           I+EDEFHK+SLM+CDFFIRKPPDPDNDVYDFREMYVTPPDTDIY+IP+VLAPMPQKYIRC
Sbjct: 130 INEDEFHKLSLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRC 189

Query: 114 AVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDS 173
           A+SDYGCYNVTEPPIDAPRDP+YKSEREI KVFL KHYRNRR  DPEFVLD EEIYVIDS
Sbjct: 190 AMSDYGCYNVTEPPIDAPRDPLYKSEREISKVFLTKHYRNRRTNDPEFVLDLEEIYVIDS 249

Query: 174 KTKSITRAKVLV 185
           KTKSITRA+VLV
Sbjct: 250 KTKSITRARVLV 261

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063005|ref|XP_002300963.1| predicted protein [Populus trichocarpa] gi|222842689|gb|EEE80236.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 159/191 (83%), Positives = 175/191 (91%), Gaps = 6/191 (3%)

Query: 1   MDEDEMEELDNKKDYDVEYDPLVAGG------DEDITMVDSKSFVYTQGWDSETVVDYRI 54
           MDE+E+EELDNKKDYDVEY+PL A        DE+I+MV+SKSFV+TQGWDSE +VDYRI
Sbjct: 68  MDEEEVEELDNKKDYDVEYEPLSASAIAVGNEDEEISMVNSKSFVHTQGWDSEKIVDYRI 127

Query: 55  DEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCA 114
           +E+EFHKISL +CDFFIRKPPDPD+DVYDFREMYVTPPDTD+YAIPKVLAPMPQKYIRCA
Sbjct: 128 NEEEFHKISLFDCDFFIRKPPDPDDDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCA 187

Query: 115 VSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSK 174
            +DYG YNVTEPPIDAPRDP YKSEREI KVFL KHYRNRRLGDP+FVLDF+EIYVIDSK
Sbjct: 188 ETDYGGYNVTEPPIDAPRDPFYKSEREIWKVFLFKHYRNRRLGDPDFVLDFDEIYVIDSK 247

Query: 175 TKSITRAKVLV 185
           TKSITRAKVLV
Sbjct: 248 TKSITRAKVLV 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459665|ref|XP_002284617.1| PREDICTED: uncharacterized protein LOC100250482 [Vitis vinifera]

 Score =  308 bits (788), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 152/180 (84%), Positives = 161/180 (89%), Gaps = 5/180 (2%)

Query: 11  NKKDYDVEYDPLVA-----GGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLM 65
           NKKDYDVEYDPL A        +DI MV SKSFV  QGWDSE VVDYRI+EDEFHKISL 
Sbjct: 87  NKKDYDVEYDPLAAAAAAASVSDDIAMVQSKSFVSIQGWDSEMVVDYRINEDEFHKISLF 146

Query: 66  ECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTE 125
           +CDFFIRKPPDPDNDVYDFREMYVTPPDTD+YAIP+VLAPMPQKYIRCA SDYGCY+VTE
Sbjct: 147 DCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPRVLAPMPQKYIRCAKSDYGCYDVTE 206

Query: 126 PPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV 185
           PPIDAPRDP+YKSERE+ KVFL KHYRNRRL DPEFVLDFEEIYVIDSKTKSITRAKV+V
Sbjct: 207 PPIDAPRDPLYKSEREVWKVFLTKHYRNRRLADPEFVLDFEEIYVIDSKTKSITRAKVVV 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500699|ref|XP_004161171.1| PREDICTED: uncharacterized protein LOC101225304 [Cucumis sativus]

 Score =  307 bits (786), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 148/185 (80%), Positives = 164/185 (88%), Gaps = 10/185 (5%)

Query: 11  NKKDYDVEYDPLV----------AGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFH 60
           NKKD+D+EYDPL             GDE+I++V SKSFV TQGWDSE +VDYRI+E+EFH
Sbjct: 86  NKKDFDIEYDPLAAAAAAAAGSDGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFH 145

Query: 61  KISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGC 120
           KISL+ CDFFIRKPPDPD+DVYDFREMYVTPPDTD+YAIPKVLAPMPQKYIRCA SDYGC
Sbjct: 146 KISLLHCDFFIRKPPDPDSDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSDYGC 205

Query: 121 YNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITR 180
           YNVTEPPID+PRDP+YKSE+E+ KVFL KH+RNRRL DPEFVLDFEEIYVIDSKTKSITR
Sbjct: 206 YNVTEPPIDSPRDPLYKSEKEVLKVFLTKHFRNRRLRDPEFVLDFEEIYVIDSKTKSITR 265

Query: 181 AKVLV 185
           AKVLV
Sbjct: 266 AKVLV 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510055|ref|XP_003523756.1| PREDICTED: uncharacterized protein LOC100782614 [Glycine max]

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/186 (79%), Positives = 166/186 (89%), Gaps = 9/186 (4%)

Query: 9   LDNKKDYDVEYDPLV---------AGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEF 59
           LDNKKD+D+EYDPLV         +  D++I  V+SKSFV TQGWDS+TV+DY+I+EDEF
Sbjct: 76  LDNKKDFDIEYDPLVPAAAAAAAASAADDNIAFVESKSFVSTQGWDSDTVLDYKINEDEF 135

Query: 60  HKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYG 119
           HKI L++CDFFIRKPPDPDNDVYDFREMYVTPPDTD+Y+IPKVLAPMPQKYIRCA SDYG
Sbjct: 136 HKICLVDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYSIPKVLAPMPQKYIRCAQSDYG 195

Query: 120 CYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSIT 179
            YNVTEPPIDAPRDP+YK+EREI KV+L KHY+NRR GDPEFVLDFEEIYV+DSKTKSIT
Sbjct: 196 SYNVTEPPIDAPRDPLYKTEREILKVYLTKHYKNRRKGDPEFVLDFEEIYVVDSKTKSIT 255

Query: 180 RAKVLV 185
           RAKVLV
Sbjct: 256 RAKVLV 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515939|ref|XP_003526654.1| PREDICTED: uncharacterized protein LOC100792016 [Glycine max]

 Score =  291 bits (745), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 148/185 (80%), Positives = 166/185 (89%), Gaps = 8/185 (4%)

Query: 9   LDNKKDYDVEYDPLV--------AGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFH 60
           LDNKKD+D+EYDPLV        A GD+DI +V+SKSFV TQGW S+TVVDY+I+EDEFH
Sbjct: 78  LDNKKDFDIEYDPLVPAAAAAASAAGDDDIAVVESKSFVSTQGWHSDTVVDYKINEDEFH 137

Query: 61  KISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGC 120
           KI L++CDFFIRKPPDPDNDVYDFREMYVTPPDTD+Y++PKVLAPMPQKYIRCA SDYG 
Sbjct: 138 KICLVDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYSVPKVLAPMPQKYIRCAQSDYGS 197

Query: 121 YNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITR 180
           YNVTEPPIDAPRDP+YK+EREI KV+L KHY+NRR GD EFVLDFEEIYVIDSK+KSITR
Sbjct: 198 YNVTEPPIDAPRDPLYKTEREILKVYLTKHYKNRRKGDSEFVLDFEEIYVIDSKSKSITR 257

Query: 181 AKVLV 185
           AKVLV
Sbjct: 258 AKVLV 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141763|emb|CBI18966.3| unnamed protein product [Vitis vinifera]

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/154 (88%), Positives = 145/154 (94%)

Query: 32  MVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTP 91
           MV SKSFV  QGWDSE VVDYRI+EDEFHKISL +CDFFIRKPPDPDNDVYDFREMYVTP
Sbjct: 1   MVQSKSFVSIQGWDSEMVVDYRINEDEFHKISLFDCDFFIRKPPDPDNDVYDFREMYVTP 60

Query: 92  PDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHY 151
           PDTD+YAIP+VLAPMPQKYIRCA SDYGCY+VTEPPIDAPRDP+YKSERE+ KVFL KHY
Sbjct: 61  PDTDVYAIPRVLAPMPQKYIRCAKSDYGCYDVTEPPIDAPRDPLYKSEREVWKVFLTKHY 120

Query: 152 RNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV 185
           RNRRL DPEFVLDFEEIYVIDSKTKSITRAKV+V
Sbjct: 121 RNRRLADPEFVLDFEEIYVIDSKTKSITRAKVVV 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2026972	328	PTAC6 "AT1G21600" [Arabidopsis	1.0	0.564	0.828	3.3e-86

TAIR|locus:2026972 PTAC6 "AT1G21600" [Arabidopsis thaliana (taxid:3702)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 159/192 (82%), Positives = 173/192 (90%)

Query:     1 MDEDEMEELDNKKDYDVEYDPLVA-------GGDEDITMVDSKSFVYTQGWDSETVVDYR 53
             MD++E+EE+DNKKDYDVEYDPL A       GGD DI  V SKSF+ TQGWDS+ VVDYR
Sbjct:    70 MDDEEVEEVDNKKDYDVEYDPLAAAIAAAGGGGDGDIAFVQSKSFISTQGWDSDMVVDYR 129

Query:    54 IDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRC 113
             I+EDEFHK+SLM+CDFFIRKPPDPDNDVYDFREMYVTPPDTDIY+IP+VLAPMPQKYIRC
Sbjct:   130 INEDEFHKLSLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRC 189

Query:   114 AVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDS 173
             A+SDYGCYNVTEPPIDAPRDP+YKSEREI KVFL KHYRNRR  DPEFVLD EEIYVIDS
Sbjct:   190 AMSDYGCYNVTEPPIDAPRDPLYKSEREISKVFLTKHYRNRRTNDPEFVLDLEEIYVIDS 249

Query:   174 KTKSITRAKVLV 185
             KTKSITRA+VLV
Sbjct:   250 KTKSITRARVLV 261


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.140   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      185       185   0.00080  110 3  11 22  0.46    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  172 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.33u 0.13s 19.46t   Elapsed:  00:00:01
  Total cpu time:  19.33u 0.13s 19.46t   Elapsed:  00:00:01
  Start:  Tue May 21 01:18:46 2013   End:  Tue May 21 01:18:47 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0042793 "transcription from plastid promoter" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
pfam07879	64	pfam07879, PHB_acc_N, PHB/PHA accumulation regulat	0.003

>gnl|CDD|149123 pfam07879, PHB_acc_N, PHB/PHA accumulation regulator DNA-binding domain

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 13/48 (27%)

Query: 147 LVKHYRNRRLGDPE------------FVLDFEEIYVIDSKTKS-ITRA 181
           L+K Y NRRL D E             V D E+  VID+KT   ITR+
Sbjct: 2   LIKKYANRRLYDTETSQYITLEDIAQLVRDGEDFKVIDAKTGEDITRS 49

This domain is found at the N-terminus of the Polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA. The invariant nature of this domain compared to the C-terminal pfam05233 domain(s) suggests that it contains the DNA-binding function. Length = 64

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
TIGR01848	107	PHA_reg_PhaR polyhydroxyalkanoate synthesis repres	90.37
PF07879	64	PHB_acc_N: PHB/PHA accumulation regulator DNA-bind	89.82

>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR

Probab=90.37  E-value=0.17  Score=39.68  Aligned_cols=35  Identities=46%  Similarity=0.674  Sum_probs=29.8

Q ss_pred             eehhcccccCCCCc------------ceeecceEEEeecCcce-eeee
Q 029898          147 LVKHYRNRRLGDPE------------FVLDFEEIYVIDSKTKS-ITRA  181 (185)
Q Consensus       147 l~khyrnrr~~dp~------------fvldfeeiyvids~tks-itra  181 (185)
                      ++|-|-|||+=|.+            +|.+=+++-|+|+||+. |||+
T Consensus         2 ~IKKY~NRRLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~   49 (107)
T TIGR01848         2 IIKKYPNRRLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRS   49 (107)
T ss_pred             cccccCCCcccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHH
Confidence            68999999998875            78999999999999975 5553

Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.

>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators

Probab=89.82  E-value=0.21  Score=36.27  Aligned_cols=35  Identities=49%  Similarity=0.700  Sum_probs=29.3

Q ss_pred             eehhcccccCCCCc------------ceeecceEEEeecCcce-eeee
Q 029898          147 LVKHYRNRRLGDPE------------FVLDFEEIYVIDSKTKS-ITRA  181 (185)
Q Consensus       147 l~khyrnrr~~dp~------------fvldfeeiyvids~tks-itra  181 (185)
                      ++|-|-|||+=|.+            +|.+=+++-|+|++|+. |||+
T Consensus         2 iIKKY~NRRLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~   49 (64)
T PF07879_consen    2 IIKKYPNRRLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRS   49 (64)
T ss_pred             cccccCCCccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHH
Confidence            58999999998875            67888999999999874 5653

These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 6e-04
 Identities = 26/190 (13%), Positives = 60/190 (31%), Gaps = 51/190 (26%)

Query: 1   MDEDEMEELDNKKDYDVEYDPL-VAGGDEDITMVDSKSFVYTQGWDSETVVDYRIDEDEF 59
           ++  E  ++         +D L V      I  +     + +  W      D  +  ++ 
Sbjct: 366 LEPAEYRKM---------FDRLSVFPPSAHIPTI-----LLSLIWFDVIKSDVMVVVNKL 411

Query: 60  HKISLMECDFFIRKPPDPDNDVYDFREMY--VTPPDTDIYAIPKVLAPMPQKY--IRCAV 115
           HK SL+E          P         +Y  +     + YA+ + +      Y   +   
Sbjct: 412 HKYSLVEK--------QPKESTISIPSIYLELKVKLENEYALHRSIV---DHYNIPKT-- 458

Query: 116 SDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYV----I 171
             +   ++  P +D      Y      +   +  H +N    +    L F  +++    +
Sbjct: 459 --FDSDDLIPPYLD-----QY-----FYS-HIGHHLKNIEHPE-RMTL-FRMVFLDFRFL 503

Query: 172 DSKTKSITRA 181
           + K +  + A
Sbjct: 504 EQKIRHDSTA 513

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00