Citrus Sinensis ID: 029906

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MSTSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGVTDPSFSFSVYLYDASML
Secondary Structure (PSIPRED)
cccEEcccccccccccccccccccccccccccccccccccEEccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccEEEccccHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccEEccHHHcccccccccccEEccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccEEEcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mstsidllsfspppssmlsrtqfsfthkptfllsskkeSFFTLRASAadngagvsapavtveepkvreasegptesngaveapevkavnkfedpkwvngtwdlkqfqkngqtdwDAVIDAEARRRKwlenspesssnddpvifdtsivpwwawikrfhlpeaellngvtdpsfsFSVYLYDASML
Flexible Loop (DISEMBL)
mstsidllsfspppssMLSRTQFSFTHKPTFLLSSKKESFFTLRASAAdngagvsapavtveepkvreasegptesngaveapevkavNKFEDPKWVNGTWDLKQfqkngqtdwDAVIDAEARRRKWlenspesssnddpviFDTSIVPWWAWIKRFHLPEAELlngvtdpsfSFSVYLYDASML
Low Complexity Region (SEG)
MSTSIDllsfspppssmlsRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGVTDPSFSFSVYLYDASML
Disordered region (IsUnstruct)
***************************************************************************************VNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEA******************VIFDTSIVPWWAWIKRFHLPEAELLNGVTDPSFSFSVYLYD****
Disordered Region (DISOPRED)
********************************LS********************************************************FEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGVTDPSFSFSVYLYDASML
Disordered Region (DISEMBL)
*********FSPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVE*****************VEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKW**********DDPVIFDTSIVPWWAWIKRFHLPEAELLNGVTDPSFSFSVYLYDASML
Disordered Region (DISPRO)
*********************QFSFTHKPTFLLSSKKESFFTLR**********************************************FEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGVTDPSFSFSVYLYDASML
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGVTDPSFSFSVYLYDASML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
359495735	251	PREDICTED: uncharacterized protein LOC10	0.935	0.689	0.586	3e-49
255566759	259	transcription factor, putative [Ricinus	0.962	0.687	0.562	2e-47
224137948	257	light harvesting-like protein 3 [Populus	0.918	0.661	0.564	9e-47
224126625	258	light harvesting-like protein 3 [Populus	0.967	0.693	0.541	2e-46
356563395	264	PREDICTED: uncharacterized protein LOC10	0.967	0.678	0.533	7e-45
297745675	227	unnamed protein product [Vitis vinifera]	0.837	0.682	0.554	6e-43
449459006	266	PREDICTED: uncharacterized protein LOC10	0.945	0.657	0.547	1e-42
356510909	264	PREDICTED: uncharacterized protein LOC10	0.967	0.678	0.538	5e-42
388502596	259	unknown [Lotus japonicus]	0.951	0.679	0.523	2e-40
2245118	350	hypothetical protein [Arabidopsis thalia	0.929	0.491	0.502	2e-40

>gi|359495735|ref|XP_003635074.1| PREDICTED: uncharacterized protein LOC100855146 [Vitis vinifera]

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 105/179 (58%), Positives = 123/179 (68%), Gaps = 6/179 (3%)

Query: 10  FSPPPSSMLSRT--QFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVE----E 63
           FSPP  + L     + +FT KP+  L SKK     L A A +NGAG S  A TVE    E
Sbjct: 6   FSPPIPTHLPTLSPKPNFTLKPSLFLRSKKHQLLLLSAKATENGAGTSTSATTVEPEKAE 65

Query: 64  PKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEAR 123
            K  EA+   ++ NGA  A +V  V KFED KWV GTWDLKQF+ +G+T+WDAVIDAE R
Sbjct: 66  EKAPEAAVLDSQPNGAAAAGDVVLVTKFEDLKWVGGTWDLKQFETDGKTNWDAVIDAEVR 125

Query: 124 RRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGVTDPSFSFSVYLYDA 182
           RRKWLE++PESSSNDDPV+FDTSI+PWWAWIKRFHLPEAELLNG       F  YL D+
Sbjct: 126 RRKWLEDNPESSSNDDPVVFDTSIIPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDS 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566759|ref|XP_002524363.1| transcription factor, putative [Ricinus communis] gi|223536324|gb|EEF37974.1| transcription factor, putative [Ricinus communis]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 129/192 (67%), Gaps = 14/192 (7%)

Query: 4   SIDLLSFSPPPSSMLSRTQFSFTH---KPTFLLSSKKESF-FTLRASAADNGAGVSAPAV 59
           SI +  FSPPP+  L R+  S  H   KPT  L+     F F+   ++ DNGAG+SA A 
Sbjct: 2   SISMALFSPPPTQFL-RSLSSKPHLLTKPTSFLTPINPPFLFSAPKASTDNGAGISAAAA 60

Query: 60  TVEEPKVRE---------ASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNG 110
            VEEPK  E         A E    SNGAV+  EVK  +KF DP+W+ GTWDLKQFQK+G
Sbjct: 61  AVEEPKEAEPKAAEPSPAAVESSLGSNGAVKDAEVKLESKFVDPRWIGGTWDLKQFQKDG 120

Query: 111 QTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGVTD 170
            TDWD+VIDAE RRRKWLE++PESS+NDDPV+FDTSI+PWWAW+KRFHLPEAELLNG   
Sbjct: 121 STDWDSVIDAEVRRRKWLESNPESSTNDDPVVFDTSIIPWWAWMKRFHLPEAELLNGRAA 180

Query: 171 PSFSFSVYLYDA 182
               F  Y  D+
Sbjct: 181 MVGFFMAYFVDS 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137948|ref|XP_002326480.1| light harvesting-like protein 3 [Populus trichocarpa] gi|118482026|gb|ABK92944.1| unknown [Populus trichocarpa] gi|222833802|gb|EEE72279.1| light harvesting-like protein 3 [Populus trichocarpa]

 Score =  191 bits (486), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 132/195 (67%), Gaps = 25/195 (12%)

Query: 8   LSFSPPPSSMLSRTQFSFT------HKPTFLLSSKKESFF--TLRASAADNGAGVSAPAV 59
           +S  PPP   L+R   SF+       KPT  L      F   T +AS  D GAGVSA + 
Sbjct: 1   MSLFPPP---LTRLPLSFSSKHHIIFKPTLSLRPTSPPFLLSTSKASTDDGGAGVSASSA 57

Query: 60  TVEEPKVREASEGPTES--------NGAVEAP----EVKAVNKFEDPKWVNGTWDLKQFQ 107
           TVEEPK+ + +   +ES        NGAV AP    EV+ V+KFEDP+W++GTWDLKQF+
Sbjct: 58  TVEEPKLEQKAPDSSESVPVAEKNSNGAV-APGGGVEVE-VSKFEDPRWISGTWDLKQFE 115

Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
           K+G+TDWDAVIDAE RRRKWLE +PESSSNDDPV+FDTSI+PWWAW+KRFHLPEAELLNG
Sbjct: 116 KDGKTDWDAVIDAEVRRRKWLEGNPESSSNDDPVVFDTSIIPWWAWMKRFHLPEAELLNG 175

Query: 168 VTDPSFSFSVYLYDA 182
                  F  YL D+
Sbjct: 176 RAAMIGFFMAYLVDS 190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126625|ref|XP_002329601.1| light harvesting-like protein 3 [Populus trichocarpa] gi|222870310|gb|EEF07441.1| light harvesting-like protein 3 [Populus trichocarpa]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/194 (54%), Positives = 130/194 (67%), Gaps = 15/194 (7%)

Query: 1   MSTSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKESFF--TLRASAADNGAGVSAPA 58
           MS S+ L S   PP +    ++  FT+K T  L      F   T +AS  + GAGVSA A
Sbjct: 1   MSISMSLFS---PPLTRFPPSKPHFTYKSTLSLGPTNRPFLLSTPKASTDNGGAGVSASA 57

Query: 59  VTVEEPKVREASEGPTES--------NGAVEA--PEVKAVNKFEDPKWVNGTWDLKQFQK 108
            TVEEPK+ + +   ++S        NGAV A   E   V+KF DP+W++GTWDLKQFQK
Sbjct: 58  ATVEEPKLEQKTPESSDSVPVAKNSSNGAVAAGGEEKVEVSKFGDPRWISGTWDLKQFQK 117

Query: 109 NGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGV 168
           +G+TDWDAVIDAEARRRKWL+ +PESSSN+DPV+FDTSI+PWW W+KRFHLPEAELLNG 
Sbjct: 118 DGKTDWDAVIDAEARRRKWLQCNPESSSNNDPVVFDTSIIPWWTWMKRFHLPEAELLNGR 177

Query: 169 TDPSFSFSVYLYDA 182
                 F  YL D+
Sbjct: 178 AAMIGFFMAYLVDS 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563395|ref|XP_003549949.1| PREDICTED: uncharacterized protein LOC100780555 [Glycine max]

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 104/195 (53%), Positives = 128/195 (65%), Gaps = 16/195 (8%)

Query: 2   STSIDLLSFSPP------PSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVS 55
           S S  + SFSPP      PSS  S+ +  + +   F L SK  +F  L+A+AA+NG G +
Sbjct: 5   SMSTTMASFSPPTHFSAAPSS--SKLRLVYKNNNFFSLRSKSLAFSPLKAAAAENGVGTA 62

Query: 56  A-----PAVTVEE---PKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQ 107
                  AV+V E   P V  +      +  AVE+ EVK    F DP+WV+GTWDLKQFQ
Sbjct: 63  VEPPPEQAVSVPELPPPAVGNSVGTNGSAAVAVESEEVKVKTGFVDPRWVSGTWDLKQFQ 122

Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
           KNG TDWDAVIDAEARRRKWLE++PESSSN++PV+FDTSI+PWWAW+KRFHLPEAELLNG
Sbjct: 123 KNGTTDWDAVIDAEARRRKWLEDNPESSSNENPVVFDTSIIPWWAWMKRFHLPEAELLNG 182

Query: 168 VTDPSFSFSVYLYDA 182
                  F  Y  D+
Sbjct: 183 RAAMVGFFMAYFVDS 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745675|emb|CBI40929.3| unnamed protein product [Vitis vinifera]

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 97/175 (55%), Positives = 112/175 (64%), Gaps = 20/175 (11%)

Query: 10  FSPPPSSMLSRT--QFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVR 67
           FSPP  + L     + +FT KP+  L SKK     L A A +NGAG S  A TVE  K  
Sbjct: 4   FSPPIPTHLPTLSPKPNFTLKPSLFLRSKKHQLLLLSAKATENGAGTSTSATTVEPEKAE 63

Query: 68  EASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKW 127
           E            +APE        D KWV GTWDLKQF+ +G+T+WDAVIDAE RRRKW
Sbjct: 64  E------------KAPEAA------DLKWVGGTWDLKQFETDGKTNWDAVIDAEVRRRKW 105

Query: 128 LENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGVTDPSFSFSVYLYDA 182
           LE++PESSSNDDPV+FDTSI+PWWAWIKRFHLPEAELLNG       F  YL D+
Sbjct: 106 LEDNPESSSNDDPVVFDTSIIPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDS 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459006|ref|XP_004147237.1| PREDICTED: uncharacterized protein LOC101206464 [Cucumis sativus] gi|449510491|ref|XP_004163681.1| PREDICTED: uncharacterized LOC101206464 [Cucumis sativus]

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/201 (54%), Positives = 129/201 (64%), Gaps = 26/201 (12%)

Query: 1   MSTSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKK-----ESFFTLRASAADNGAGVS 55
            S S  L +FSP   +    T FSF  +P   L ++       S FT+RA+A DNGAG+S
Sbjct: 7   FSPSSHLSTFSPSHHT----THFSF--RPFSSLRTRNPSSSSSSLFTIRATA-DNGAGIS 59

Query: 56  APA--VTVEEPKVR----------EASEGPTESNGAVEAPEVKAV--NKFEDPKWVNGTW 101
             +  V+VE P  +          E  E    +NG+V A E      +KFEDPKWVNGTW
Sbjct: 60  GGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTW 119

Query: 102 DLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPE 161
           DL QFQKNG TDWDAVIDAEARRRKWLEN+PESSSN+DPV+FDTSIVPWWAWIKR+HLPE
Sbjct: 120 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 179

Query: 162 AELLNGVTDPSFSFSVYLYDA 182
           AELLNG       F  Y  D+
Sbjct: 180 AELLNGRAAMVGFFMAYFVDS 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510909|ref|XP_003524176.1| PREDICTED: uncharacterized protein LOC100789538 [Glycine max]

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/195 (53%), Positives = 127/195 (65%), Gaps = 16/195 (8%)

Query: 2   STSIDLLSFSPP------PSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVS 55
           S S  + SFSPP      PSS  S+ +  + +   F L S+  S   L+A+A++NG G +
Sbjct: 5   SMSTTMASFSPPTHFSATPSS--SKPRLVYKNNFFFSLRSRSLSLSPLKAAASENGVGTA 62

Query: 56  A-----PAVTVEEPK---VREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQ 107
                  AV V EP    V  +S G   S  AVE+  VK  + F DP+WV GTWDLKQFQ
Sbjct: 63  VEPPPEQAVPVPEPSLPPVDNSSVGTNGSAVAVESEVVKVQSSFVDPRWVAGTWDLKQFQ 122

Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
           KNG TDWDAVIDAEARRRKWLE++PESSSN++PV+FDTSIVPWWAW+KRFHLPEAELLNG
Sbjct: 123 KNGTTDWDAVIDAEARRRKWLEDNPESSSNENPVVFDTSIVPWWAWMKRFHLPEAELLNG 182

Query: 168 VTDPSFSFSVYLYDA 182
                  F  Y  D+
Sbjct: 183 RAAMIGFFMAYFVDS 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502596|gb|AFK39364.1| unknown [Lotus japonicus]

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/195 (52%), Positives = 122/195 (62%), Gaps = 19/195 (9%)

Query: 2   STSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTLR-----------ASAADN 50
           + S  + SFSP   +  S T  S   KP     ++   FFTLR            +++DN
Sbjct: 3   TMSTTMASFSP--LTRFSATLSSSNSKPHL---TQNHFFFTLRPKNLPLSPLKWKASSDN 57

Query: 51  GAGVSAPAVT-VEEP--KVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQ 107
           GAG S  A T VE P  K+   + G   S  A  A E+K    FEDP+WV GTWDL QF+
Sbjct: 58  GAGASDSAATAVESPPEKISVGTNGSASSAAAAAAEELKIPGGFEDPRWVAGTWDLMQFR 117

Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
           KNG TDWDAVIDAEARRRKWL+++PESSSN++PV+FDTSIVPWWAWIKRFHLPEAE LNG
Sbjct: 118 KNGSTDWDAVIDAEARRRKWLQDNPESSSNENPVVFDTSIVPWWAWIKRFHLPEAERLNG 177

Query: 168 VTDPSFSFSVYLYDA 182
                  F  YL D+
Sbjct: 178 RAAMIGFFMAYLVDS 192

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2245118|emb|CAB10540.1| hypothetical protein [Arabidopsis thaliana] gi|7268512|emb|CAB78763.1| hypothetical protein [Arabidopsis thaliana]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/191 (50%), Positives = 127/191 (66%), Gaps = 19/191 (9%)

Query: 10  FSPPPSSMLSRTQFSFTHKPTF-LLSSKKESFFTLRASAADNGAGVSAPAVTVEEPK--- 65
           FSPP SS  S    +F  K +F LLSS + S  ++  +++D+G+     AV+VE P+   
Sbjct: 4   FSPPISSS-SLQNPNFIPKFSFSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVEAPEPVE 62

Query: 66  --VRE---------ASEGPTESNGAVEAPEVK---AVNKFEDPKWVNGTWDLKQFQKNGQ 111
             V+E           E  T  N AVE  E+K   +V KF+D +W+NGTWDLKQF+K+G+
Sbjct: 63  VIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWDLKQFEKDGK 122

Query: 112 TDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGVTDP 171
           TDWD+VI AEA+RRKWLE +PE++SND+PV+FDTSI+PWWAWIKR+HLPEAELLNG    
Sbjct: 123 TDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRAAM 182

Query: 172 SFSFSVYLYDA 182
              F  Y  D+
Sbjct: 183 IGFFMAYFVDS 193

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2151972	258	LIL3:2 "AT5G47110" [Arabidopsi	0.827	0.593	0.518	2.9e-39
TAIR|locus:2129296	262	LIL3:1 [Arabidopsis thaliana (	0.864	0.610	0.494	8.9e-38

TAIR|locus:2151972 LIL3:2 "AT5G47110" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 85/164 (51%), Positives = 117/164 (71%)

Query:    30 TFLLSSKKESFFTLRASAADNGAG-----VSAPA-VTVEEPKVREASEGPTES-NGAV-- 80
             T LLS+K+ S  ++  +++DNG       +  PA V VEE  V+  +E  + S NGAV  
Sbjct:    27 TSLLSTKRFSLISVPRASSDNGTTSPVVEIPKPASVAVEEVPVKSPAESSSASENGAVGG 86

Query:    81 EAPE--VKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSND 138
             EA +   + V K+++ KWVNGTWDLKQF+K+G+TDWD+VI +EA+RRKWLE++PE++SND
Sbjct:    87 EATDSSTETVIKYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSND 146

Query:   139 DPVIFDTSIVPWWAWIKRFHLPEAELLNGVTDPSFSFSVYLYDA 182
             + V+FDTSI+PWWAW+KR+HLPEAELLNG       F  Y  D+
Sbjct:   147 ELVVFDTSIIPWWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDS 190

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

TAIR|locus:2129296 LIL3:1 [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 84/170 (49%), Positives = 108/170 (63%)

Query:    23 FSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPA---VTVEEPKVR----EASEGPTE 75
             FS      F L S   +     +++      V AP    V V+EP       +  E  T 
Sbjct:    24 FSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVEAPEPVEVIVKEPPQSTPAVKKEETATA 83

Query:    76 SNGAVEAPEVK---AVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSP 132
              N AVE  E+K   +V KF+D +W+NGTWDLKQF+K+G+TDWD+VI AEA+RRKWLE +P
Sbjct:    84 KNVAVEGEEMKTTESVVKFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENP 143

Query:   133 ESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGVTDPSFSFSVYLYDA 182
             E++SND+PV+FDTSI+PWWAWIKR+HLPEAELLNG       F  Y  D+
Sbjct:   144 ETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDS 193


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.128   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      185       172   0.00093  108 3  11 23  0.46    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  163 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.72u 0.11s 18.83t   Elapsed:  00:00:01
  Total cpu time:  18.72u 0.11s 18.83t   Elapsed:  00:00:01
  Start:  Fri May 10 00:09:05 2013   End:  Fri May 10 00:09:06 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006417 "regulation of translation" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
PLN00014	250	PLN00014, PLN00014, light-harvesting-like protein	1e-57

>gnl|CDD|177653 PLN00014, PLN00014, light-harvesting-like protein 3; Provisional

 Score =  180 bits (459), Expect = 1e-57
 Identities = 82/180 (45%), Positives = 110/180 (61%), Gaps = 4/180 (2%)

Query: 7   LLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKE-SFFTLRASAADN-GAGVSAPAVTVEEP 64
            +S S   SS L  ++ +   + +  L +K E S  ++  ++ D  G     P+      
Sbjct: 3   SMSLSRASSSTLVVSKPNPQSRSSRSLGAKSEGSLVSVTVASTDGGGISERKPSPLERGG 62

Query: 65  KVR--EASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEA 122
            +    A+        A +     +V KFEDP+W NGTWDL QF+K+G+TDWDAVIDAE 
Sbjct: 63  TLEGEAAAGKDPGPAAAAKTSLAVSVGKFEDPRWKNGTWDLNQFKKDGKTDWDAVIDAEV 122

Query: 123 RRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGVTDPSFSFSVYLYDA 182
            RRKWLE++PE+SSND+PV+FDTSI+PWWAW+KRFHLPEAELLNG       F  YL D+
Sbjct: 123 VRRKWLEDNPETSSNDEPVLFDTSIIPWWAWVKRFHLPEAELLNGRAAMVGFFMAYLVDS 182

Length = 250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
PLN00014	250	light-harvesting-like protein 3; Provisional	100.0
PHA02337	35	putative high light inducible protein	98.85
PLN00084	214	photosystem II subunit S (PsbS); Provisional	97.7
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	97.24
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	96.86
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	94.73
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	94.38
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	94.21
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	94.18
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	94.08
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	93.97
PLN00187	286	photosystem II light-harvesting complex II protein	93.77
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	93.49
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	93.34
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	93.08
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	92.73
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	92.67
PLN00171	324	photosystem light-harvesting complex -chlorophyll	92.33
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	92.24
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	91.69
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	89.5
PLN00187	286	photosystem II light-harvesting complex II protein	89.46
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	88.22
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	88.04
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	88.03
PLN00171	324	photosystem light-harvesting complex -chlorophyll	88.02
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	87.03
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	84.89
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	84.47
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	84.38

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=100.00  E-value=9.5e-66  Score=439.57  Aligned_cols=179  Identities=44%  Similarity=0.775  Sum_probs=145.5

Q ss_pred             cccccccCCCCCCC-ccCCccccccCcceeecCCC-ccchhhhcccccCCCccC-CCcccccCCCccc--CCCCCCCCCC
Q 029906            4 SIDLLSFSPPPSSM-LSRTQFSFTHKPTFLLSSKK-ESFFTLRASAADNGAGVS-APAVTVEEPKVRE--ASEGPTESNG   78 (185)
Q Consensus         4 s~~ma~FSPp~~~~-~~~p~~~~~~k~~~~L~~~~-~~l~~~~~as~d~ga~~~-~~a~~VE~Pk~~~--a~~~~~~sn~   78 (185)
                      +|+|++++++.+++ +++|+  ..+++..+|.+++ .+++...+++.+++..++ .++..++.++...  +.-...+..+
T Consensus         1 ~~~~sl~~~~~~~~~~~k~~--~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~pl~~gg~l~g~~a~gk~~~~aa   78 (250)
T PLN00014          1 MISMSLSRASSSTLVVSKPN--PQSRSSRSLGAKSEGSLVSVTVASTDGGGISERKPSPLERGGTLEGEAAAGKDPGPAA   78 (250)
T ss_pred             CcccccCCCccccccccCCC--cccccccccccccccceEEEeecccCCCCccccCCCccccCCCcccccccccCccccc
Confidence            36778888776665 47888  8999999999999 888999999998875333 2333444443221  1111111112


Q ss_pred             cccCcccccCCCccCCccccCccchhhhhhcCCccchhhhhHHHHHhhhhhcCCCCCCCCCCeeeecCCcchhhhhhccC
Q 029906           79 AVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFH  158 (185)
Q Consensus        79 A~~~~e~~~~~~f~D~rW~~GtWDl~~F~~~g~~dWDavIdaE~~rRK~Led~Pe~s~n~~pV~fdts~~Pww~wikr~h  158 (185)
                      ++......++++|+||||+||||||+||++||+||||+|||||++||||||||||+|+|||||+|||||||||+||||||
T Consensus        79 ~~~~~~~~~~~~f~d~RW~~GtWDl~qF~~dG~~DWd~vIdaEv~rRK~LE~nPe~s~n~epv~FdtSiiPWWaW~~rf~  158 (250)
T PLN00014         79 AAKTSLAVSVGKFEDPRWKNGTWDLNQFKKDGKTDWDAVIDAEVVRRKWLEDNPETSSNDEPVLFDTSIIPWWAWVKRFH  158 (250)
T ss_pred             ccccccccccccccCchhcCCcccHHHHhhcCCcchHHHHHHHHHHHHHHhhCccccCCCCCceeecccccHHHHHHhcc
Confidence            23333344689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          159 LPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       159 LpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      |++||++|||+|||||+++|++|.+|
T Consensus       159 l~~aE~lNGR~AMiGFvaal~~E~~T  184 (250)
T PLN00014        159 LPEAELLNGRAAMVGFFMAYLVDSLT  184 (250)
T ss_pred             CchhHhhhhHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999986

>PHA02337 putative high light inducible protein

Probab=98.85  E-value=9.4e-10  Score=71.59  Aligned_cols=25  Identities=28%  Similarity=0.137  Sum_probs=23.6

Q ss_pred             hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          160 PEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       160 peAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      ++||++|||+|||||++++++|.+|
T Consensus         3 ~~aE~~NGRlAMiGfv~~~~~e~~t   27 (35)
T PHA02337          3 PEAEIFNGWLAMIGFVAAVGAYATT   27 (35)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999876

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=97.70  E-value=1.4e-05  Score=68.41  Aligned_cols=24  Identities=25%  Similarity=-0.056  Sum_probs=22.4

Q ss_pred             hhHhhcCcchhhHHHHHHHHhhcc
Q 029906          161 EAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       161 eAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      .-|++|||+||+||++++++|.+|
T Consensus       137 ~nE~~NGRLAMLGF~~alitE~lT  160 (214)
T PLN00084        137 PYELFNGRLAMLGFAFAIAGDAVT  160 (214)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHh
Confidence            459999999999999999999987

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=97.24  E-value=0.00011  Score=56.57  Aligned_cols=26  Identities=23%  Similarity=0.157  Sum_probs=23.6

Q ss_pred             chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          159 LPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       159 LpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      +.++|+.|||+||+||+..++.|.++
T Consensus        29 ~R~aEl~hGR~AMLa~~g~~v~e~~~   54 (156)
T PF00504_consen   29 YREAELKHGRVAMLAFVGALVQEAGT   54 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHCHS
T ss_pred             HHHhHHHhhhhhhhhhHHHHHHHHhc
Confidence            38999999999999999999998764

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=96.86  E-value=0.00041  Score=53.43  Aligned_cols=25  Identities=20%  Similarity=-0.027  Sum_probs=21.0

Q ss_pred             cCchhhHhhcCcchhhHHHHHHHHh
Q 029906          157 FHLPEAELLNGVTDPSFSFSVYLYD  181 (185)
Q Consensus       157 ~hLpeAElLNGRaAMiGF~~a~l~E  181 (185)
                      .....+|+.|||+|||||+..++.|
T Consensus       131 ~~~~~~El~NGRlAMla~~g~~~~e  155 (156)
T PF00504_consen  131 EFMQLAELKNGRLAMLAFAGFVAQE  155 (156)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3448999999999999998877655

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=94.73  E-value=0.016  Score=50.73  Aligned_cols=25  Identities=12%  Similarity=-0.089  Sum_probs=22.5

Q ss_pred             hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          160 PEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       160 peAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      .++|+.|||.||+|++-.++.|.++
T Consensus        86 r~aEL~hGR~AMLa~~G~lv~Ell~  110 (262)
T PLN00048         86 AYGEVINGRFAMLGAAGAIAPEILG  110 (262)
T ss_pred             HHHHhhcchHHHHHHhhHHHHHHhc
Confidence            5999999999999999888888764

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=94.38  E-value=0.021  Score=49.87  Aligned_cols=25  Identities=24%  Similarity=0.077  Sum_probs=22.7

Q ss_pred             hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          160 PEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       160 peAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      .++|+.|||.||+|++-.++-|.++
T Consensus        92 r~aEl~hGRlAMla~~G~l~~e~l~  116 (250)
T PLN00101         92 VQAELVNGRWAMLGVAGMLLPEVFT  116 (250)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhc
Confidence            6999999999999999888888775

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=94.21  E-value=0.017  Score=48.45  Aligned_cols=25  Identities=12%  Similarity=0.036  Sum_probs=19.6

Q ss_pred             chhhHhhcCcchhhHHHHHHHHhhc
Q 029906          159 LPEAELLNGVTDPSFSFSVYLYDAS  183 (185)
Q Consensus       159 LpeAElLNGRaAMiGF~~a~l~Eal  183 (185)
                      +...|+-|||+||||+.-.+.=|.+
T Consensus       168 ~~~~EL~NGRLAMiai~G~~~qe~l  192 (202)
T PLN00120        168 KRAIELNQGRAAQMGILALMVHEQL  192 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3468999999999999776665554

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=94.18  E-value=0.02  Score=48.38  Aligned_cols=27  Identities=19%  Similarity=-0.043  Sum_probs=21.1

Q ss_pred             CchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          158 HLPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       158 hLpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      .+..+|+-|||+||+|+.-.+.-|.+|
T Consensus       176 ~~~~~El~NGRlAM~a~~g~~~~~~~t  202 (209)
T PLN00089        176 KKKDKELKNGRLAMVAIGGIATGSAIT  202 (209)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHc
Confidence            455789999999999997666656554

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=94.08  E-value=0.025  Score=49.29  Aligned_cols=25  Identities=16%  Similarity=0.033  Sum_probs=22.1

Q ss_pred             hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          160 PEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       160 peAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      .++|+.|||+||+|++-.++.|.++
T Consensus        84 r~aElkhGR~AMlA~~G~l~~e~~~  108 (252)
T PLN00147         84 VQAELVHSRFAMAGVAGILFTDLLR  108 (252)
T ss_pred             HHHHhhccHHHHHHHhhhhHHHHhc
Confidence            7999999999999999888888654

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=93.97  E-value=0.026  Score=49.29  Aligned_cols=26  Identities=35%  Similarity=0.342  Sum_probs=22.6

Q ss_pred             chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          159 LPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       159 LpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      +.++|+.|||.||+|++=.++.|.+.
T Consensus        73 ~r~aEl~hGR~AMla~~G~~~~E~~~   98 (246)
T PLN00100         73 LQEAELMNGRWAMAATAGILFTDAVG   98 (246)
T ss_pred             HHHHHhhcchHHHHHHhhhhHHHHhc
Confidence            47999999999999999888888754

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=93.77  E-value=0.035  Score=49.41  Aligned_cols=25  Identities=20%  Similarity=0.162  Sum_probs=22.6

Q ss_pred             hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          160 PEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       160 peAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      .|+|+.|||.||+|++=.++.|.++
T Consensus       134 REaELiHGRwAMLAvaG~lvpEll~  158 (286)
T PLN00187        134 RECELIHGRWAMLATLGALSVEALT  158 (286)
T ss_pred             HHHHhhhhHHHHHHhhchhhHHhcc
Confidence            7999999999999999888888763

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=93.49  E-value=0.049  Score=47.98  Aligned_cols=26  Identities=12%  Similarity=0.064  Sum_probs=22.4

Q ss_pred             chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          159 LPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       159 LpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      +.++|+.|||.||+|++=.++-|.++
T Consensus       100 ~r~aEl~HGR~AMLA~~G~~~~e~l~  125 (267)
T PLN00098        100 FAQAELMHSRWAMLAVAGILIPECLE  125 (267)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHhc
Confidence            37999999999999998888877654

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=93.34  E-value=0.056  Score=45.74  Aligned_cols=25  Identities=20%  Similarity=0.009  Sum_probs=21.0

Q ss_pred             hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          160 PEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       160 peAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      .++|+-|||+||++++--++.|.++
T Consensus        76 r~~ElkhGR~AMlA~~G~~~~~~~~  100 (209)
T PLN00089         76 RESELKHGRAAMLAVAGFIAPDFVR  100 (209)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHc
Confidence            6999999999999998777766543

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=93.08  E-value=0.048  Score=47.33  Aligned_cols=25  Identities=16%  Similarity=-0.024  Sum_probs=21.9

Q ss_pred             hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          160 PEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       160 peAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      .++|+.|||.||+|++=.++.|.++
T Consensus        83 r~~ELkHGR~AMLAv~G~i~~E~l~  107 (243)
T PLN00099         83 KESELIHCRWAMLAVPGILVPEALG  107 (243)
T ss_pred             HHHhccCCcHHHHHHhhHHHHHHhc
Confidence            5999999999999998888888754

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=92.73  E-value=0.049  Score=47.86  Aligned_cols=26  Identities=8%  Similarity=-0.130  Sum_probs=22.9

Q ss_pred             chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          159 LPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       159 LpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      +.++|+.|||.||+|++-.++.|.++
T Consensus        91 ~re~El~hGR~AMLa~~G~i~~e~l~  116 (262)
T PLN00025         91 NRELEVIHARWAMLGALGCVTPELLA  116 (262)
T ss_pred             HHHHHHhccHHHHHHHhhhhhHHHhh
Confidence            37999999999999999888888764

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=92.67  E-value=0.075  Score=46.35  Aligned_cols=25  Identities=12%  Similarity=-0.153  Sum_probs=22.3

Q ss_pred             hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          160 PEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       160 peAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      .++|+.|||.||+|++-.++-|.++
T Consensus        83 r~aEl~hGR~AMLa~~G~lv~e~l~  107 (244)
T PLN00097         83 VQAELMHARWAMLGLAGCVAPELLT  107 (244)
T ss_pred             HHHHHhcchHHHHHHhhhhHHHHhc
Confidence            5999999999999999888888764

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=92.33  E-value=0.062  Score=48.75  Aligned_cols=26  Identities=12%  Similarity=-0.029  Sum_probs=22.5

Q ss_pred             chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          159 LPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       159 LpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      +.++|+.|||.||+|++=.++.|.++
T Consensus       148 ~reaELkHGR~AMLA~~G~lv~e~l~  173 (324)
T PLN00171        148 YFNFEILHARWAMLAALGVVIPEVLD  173 (324)
T ss_pred             HHHHHhccchHHHHHHhhHHHHHHhc
Confidence            48999999999999998888877653

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=92.24  E-value=0.065  Score=47.05  Aligned_cols=25  Identities=24%  Similarity=0.242  Sum_probs=22.0

Q ss_pred             hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          160 PEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       160 peAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      .++|+.|||.||+|++-.++.|.++
T Consensus        96 r~~El~hGR~AMLa~~G~~v~e~l~  120 (255)
T PLN00170         96 REAELIHGRWAMAAVVGIFVGQAWS  120 (255)
T ss_pred             HHHHhhccHHHHHHHHhhhhHHHcc
Confidence            6899999999999998888887764

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=91.69  E-value=0.089  Score=45.96  Aligned_cols=27  Identities=11%  Similarity=0.086  Sum_probs=21.6

Q ss_pred             CchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          158 HLPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       158 hLpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      .+...|+-|||+||++|+-.++-+.+|
T Consensus       199 ~~k~kEikNGRLAMlA~~G~~~q~~vt  225 (252)
T PLN00147        199 DWKLKEIKNGRLAMVAMLGFFVQASVT  225 (252)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence            456789999999999998777666554

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=89.50  E-value=0.18  Score=44.19  Aligned_cols=23  Identities=13%  Similarity=-0.029  Sum_probs=18.2

Q ss_pred             cCchhhHhhcCcchhhHHHHHHH
Q 029906          157 FHLPEAELLNGVTDPSFSFSVYL  179 (185)
Q Consensus       157 ~hLpeAElLNGRaAMiGF~~a~l  179 (185)
                      ..+...|+-|||+||++|+--+.
T Consensus       158 ~~~K~KEIkNGRLAMlA~lG~~~  180 (246)
T PLN00100        158 PEMKVKEVKNGRLAMLAFLGMVS  180 (246)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhh
Confidence            35678999999999999865443

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=89.46  E-value=0.14  Score=45.58  Aligned_cols=28  Identities=14%  Similarity=-0.044  Sum_probs=22.1

Q ss_pred             cCchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          157 FHLPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       157 ~hLpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      .++..+|+-|||+||++++--++-+.+|
T Consensus       233 ~~~k~kEIkNGRLAMlA~lG~~vq~~vt  260 (286)
T PLN00187        233 ETLQLAEIKHARLAMVAFLGFAVQAAAT  260 (286)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence            4567899999999999988766655543

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=88.22  E-value=0.24  Score=43.66  Aligned_cols=27  Identities=19%  Similarity=0.165  Sum_probs=20.6

Q ss_pred             CchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          158 HLPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       158 hLpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      ++...|+-|||+||++|+-.++-+.+|
T Consensus       205 ~~k~kEikNGRLAMlA~~G~~~q~~vT  231 (262)
T PLN00025        205 ELKVKEIKNGRLAMFSMFGFFVQAIVT  231 (262)
T ss_pred             HHHHHHHhhhhHHHHHHHHHhhhhhhc
Confidence            457889999999999987665555443

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=88.04  E-value=0.24  Score=43.08  Aligned_cols=23  Identities=13%  Similarity=-0.039  Sum_probs=18.0

Q ss_pred             cCchhhHhhcCcchhhHHHHHHH
Q 029906          157 FHLPEAELLNGVTDPSFSFSVYL  179 (185)
Q Consensus       157 ~hLpeAElLNGRaAMiGF~~a~l  179 (185)
                      ..+...|+-|||+||++|+--++
T Consensus       184 ~~~k~kELkNGRLAMiA~lGf~v  206 (243)
T PLN00099        184 EEYKVKEIKNGRLALLAFVGFCV  206 (243)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHH
Confidence            35667899999999999865443

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=88.03  E-value=0.25  Score=43.42  Aligned_cols=27  Identities=15%  Similarity=0.082  Sum_probs=20.9

Q ss_pred             CchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          158 HLPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       158 hLpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      .+...|+-|||+||++++--++-+.+|
T Consensus       209 ~~k~~EiknGRLAM~A~~G~~~q~~~t  235 (262)
T PLN00048        209 ELKLKEVKNGRLAMLAILGYFIQALVT  235 (262)
T ss_pred             HHHHHHHhhhHHHHHHhhhHhhhhhhc
Confidence            456889999999999987666655543

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=88.02  E-value=0.23  Score=45.12  Aligned_cols=27  Identities=22%  Similarity=0.193  Sum_probs=21.4

Q ss_pred             CchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          158 HLPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       158 hLpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      .+...|+-|||+||+|++-.++-+.+|
T Consensus       272 ~~k~kELkNGRLAM~A~lG~~vq~~vT  298 (324)
T PLN00171        272 DLKVKEIKNGRLAMVAWLGFYIQAAVT  298 (324)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhHhhc
Confidence            456789999999999998777666554

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=87.03  E-value=0.28  Score=43.28  Aligned_cols=27  Identities=15%  Similarity=0.027  Sum_probs=20.5

Q ss_pred             cCchhhHhhcCcchhhHHHHHHHHhhc
Q 029906          157 FHLPEAELLNGVTDPSFSFSVYLYDAS  183 (185)
Q Consensus       157 ~hLpeAElLNGRaAMiGF~~a~l~Eal  183 (185)
                      ..+...|+-|||+||++++--++-+.+
T Consensus       213 ~~~k~kEikNGRLAM~A~~G~~~q~~v  239 (267)
T PLN00098        213 MVLRTKEIKNGRLAMLAFVGFCFQAVY  239 (267)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhhh
Confidence            356778999999999998766554444

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=84.89  E-value=0.48  Score=41.45  Aligned_cols=23  Identities=17%  Similarity=0.031  Sum_probs=18.2

Q ss_pred             CchhhHhhcCcchhhHHHHHHHH
Q 029906          158 HLPEAELLNGVTDPSFSFSVYLY  180 (185)
Q Consensus       158 hLpeAElLNGRaAMiGF~~a~l~  180 (185)
                      .|..+|.-|||+||++|+--++-
T Consensus       196 ~lk~kEiknGRLAM~A~~G~~~q  218 (244)
T PLN00097        196 ELKLKEIANGRLAMLAFLGCCAQ  218 (244)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhhh
Confidence            46789999999999998755443

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=84.47  E-value=0.47  Score=41.55  Aligned_cols=21  Identities=24%  Similarity=0.066  Sum_probs=17.3

Q ss_pred             cCchhhHhhcCcchhhHHHHH
Q 029906          157 FHLPEAELLNGVTDPSFSFSV  177 (185)
Q Consensus       157 ~hLpeAElLNGRaAMiGF~~a  177 (185)
                      ..+...|.-|||+||++|+--
T Consensus       198 ~~~k~kEIKNGRLAM~A~lGf  218 (250)
T PLN00101        198 EEAKEKELANGRLAMLAFLGF  218 (250)
T ss_pred             HHHHHHHHhhcchHHHHHhhH
Confidence            467889999999999987643

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=84.38  E-value=0.28  Score=41.33  Aligned_cols=23  Identities=13%  Similarity=0.070  Sum_probs=18.5

Q ss_pred             chhhHhhcCcchhhHHHHHHHHh
Q 029906          159 LPEAELLNGVTDPSFSFSVYLYD  181 (185)
Q Consensus       159 LpeAElLNGRaAMiGF~~a~l~E  181 (185)
                      +.++|+-|||+||++++-.++.|
T Consensus        64 ~r~~ElkhGRlAMlA~~G~~~~~   86 (202)
T PLN00120         64 LRYVEIKHGRISMLAVVGYLVTE   86 (202)
T ss_pred             HHHHHhhcccHHHHhhccceeec
Confidence            36999999999999987655544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	96.17
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	95.62
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	95.52
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	95.5
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	95.29
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	94.93
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	94.29
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	94.28
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	93.53
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	92.66
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	88.03
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	87.95

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=96.17  E-value=0.001  Score=55.24  Aligned_cols=27  Identities=22%  Similarity=0.180  Sum_probs=23.8

Q ss_pred             CchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          158 HLPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       158 hLpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      .+..+|+.|||+||+||+..++.|.+|
T Consensus       175 ~~~~~E~~nGRlAM~~~~g~~~~~~~t  201 (232)
T 2bhw_A          175 ELKVKELKNGRLAMFSMFGFFVQAIVT  201 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhccchHHHHHHHHHHHHHhc
Confidence            467899999999999999998888765

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=95.62  E-value=0.0016  Score=55.79  Aligned_cols=27  Identities=15%  Similarity=0.070  Sum_probs=22.6

Q ss_pred             CchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          158 HLPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       158 hLpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      .+..+|+.|||+||+||+..++.|.+|
T Consensus       223 ~~r~~Ei~nGRlAMla~~g~~~~~~~t  249 (276)
T 2wsc_3          223 DLKLKEVKNGRLAMLAILGYFVQALVT  249 (276)
T ss_dssp             --CCSHHHHHHHHHHHHHHHHSSCCCC
T ss_pred             HHHHhhhcccchHHHHHHHHHHHHHhc
Confidence            467899999999999999988887765

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=95.52  E-value=0.0015  Score=55.05  Aligned_cols=26  Identities=23%  Similarity=0.100  Sum_probs=23.2

Q ss_pred             chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          159 LPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       159 LpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      +.++|+.|||.||+||+-.++.|.++
T Consensus        91 ~r~aEl~hGR~AMla~~G~~~~e~~~  116 (251)
T 2wsc_4           91 FVQAELVNGRWAMLGVAGMLLPEVFT  116 (251)
T ss_dssp             THHHHHHHTHHHHHHHTTSSTTSSSC
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHhc
Confidence            48999999999999999888888765

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=95.50  E-value=0.00096  Score=57.02  Aligned_cols=28  Identities=14%  Similarity=0.081  Sum_probs=24.2

Q ss_pred             cCchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          157 FHLPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       157 ~hLpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      ..+..+|+.|||+|||||+..++.|.+|
T Consensus       215 ~~~~~~Ei~nGRlAMla~~g~~~~~~~t  242 (269)
T 2wsc_2          215 KELRTKEIKNGRLAMLAVMGAWFQHIYT  242 (269)
T ss_dssp             TTSTTTTHHHHHHHHTTTSSSCHHHHHT
T ss_pred             HHHHHhhcccchHHHHHHHHHHHHHHhc
Confidence            4578999999999999999888877765

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=95.29  E-value=0.0037  Score=53.07  Aligned_cols=26  Identities=15%  Similarity=-0.058  Sum_probs=23.1

Q ss_pred             chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          159 LPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       159 LpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      +..+|+.|||+||+||+..++.|.+|
T Consensus       193 ~r~~ElknGRlAMla~~g~~~q~~vt  218 (243)
T 3pl9_A          193 LQLAEIKHARLAMVGFLGFAVQAAVT  218 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHhc
Confidence            57899999999999999988888765

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=94.93  E-value=0.0017  Score=55.65  Aligned_cols=26  Identities=15%  Similarity=0.013  Sum_probs=23.2

Q ss_pred             chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          159 LPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       159 LpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      +.++|+.|||.||+||+-.++.|.++
T Consensus        99 ~r~aEl~hGR~AMLa~~G~l~~E~~~  124 (276)
T 2wsc_3           99 LAYGEIINGRYAMLGAVGAIAPEILG  124 (276)
T ss_dssp             HHHHHHHHHTTSCCTTTSTTSCSSCS
T ss_pred             HHHHHhhcccchhhhHHHHHHHHHhc
Confidence            37999999999999999988888765

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=94.29  E-value=0.0061  Score=51.28  Aligned_cols=25  Identities=16%  Similarity=0.006  Sum_probs=21.2

Q ss_pred             cCchhhHhhcCcchhhHHHHHHHHh
Q 029906          157 FHLPEAELLNGVTDPSFSFSVYLYD  181 (185)
Q Consensus       157 ~hLpeAElLNGRaAMiGF~~a~l~E  181 (185)
                      ..+..+|+.|||+||+||+..++.|
T Consensus       185 ~~~r~~E~~nGRlAM~a~~g~~~~~  209 (241)
T 2wsc_1          185 EELKVKEIKNGRLALLAFVGFCVQQ  209 (241)
T ss_dssp             CCSCTTHHHHHHHHHHHHHSGGGGG
T ss_pred             HHHHHhhcccccHHHHHHHHHHHhh
Confidence            4578899999999999999766666

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=94.28  E-value=0.0085  Score=50.88  Aligned_cols=25  Identities=16%  Similarity=0.182  Sum_probs=22.7

Q ss_pred             chhhHhhcCcchhhHHHHHHHHhhc
Q 029906          159 LPEAELLNGVTDPSFSFSVYLYDAS  183 (185)
Q Consensus       159 LpeAElLNGRaAMiGF~~a~l~Eal  183 (185)
                      +.+||+.|||.||+|++=.++.|.+
T Consensus        92 ~ReaELkHGRwAMLAvlG~lvpE~l  116 (243)
T 3pl9_A           92 FRECELIHGRWAMLATLGALTVEGL  116 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhcchhHHHHHHHHHhHHhh
Confidence            4799999999999999998888875

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=93.53  E-value=0.018  Score=49.18  Aligned_cols=26  Identities=12%  Similarity=-0.003  Sum_probs=23.1

Q ss_pred             chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          159 LPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       159 LpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      +.++|+.|||.||+|++-.++.|.++
T Consensus       102 ~r~aElkHGR~AMLA~~G~l~~E~l~  127 (269)
T 2wsc_2          102 NVQAELVHSRWAMLGAAGIFIPEFLT  127 (269)
T ss_dssp             THHHHHHTHHHHTTTTHHHHHHHHHC
T ss_pred             HHHHHHhcchHHHHHHHHhHhHHhhc
Confidence            47999999999999999888888764

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=92.66  E-value=0.028  Score=46.70  Aligned_cols=25  Identities=8%  Similarity=-0.097  Sum_probs=21.8

Q ss_pred             chhhHhhcCcchhhHHHHHHHHhhc
Q 029906          159 LPEAELLNGVTDPSFSFSVYLYDAS  183 (185)
Q Consensus       159 LpeAElLNGRaAMiGF~~a~l~Eal  183 (185)
                      +.|||+.+||+||+|++=.++.|.+
T Consensus        61 ~ReaELkHGR~AMLA~~G~lv~E~l   85 (232)
T 2bhw_A           61 NRELEVIHSRWAMLGALGSVFPELL   85 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccchHHHhhhhhhhHHHh
Confidence            3799999999999999888877764

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=88.03  E-value=0.15  Score=42.97  Aligned_cols=29  Identities=14%  Similarity=0.084  Sum_probs=22.9

Q ss_pred             hccCchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          155 KRFHLPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       155 kr~hLpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      +...+...|+-|||+ ||||+-.++-|.+|
T Consensus       196 ~~~~~k~kELkNGRL-MlAilGf~vQe~vT  224 (251)
T 2wsc_4          196 PTLEAKEKEIANGRL-MLAFLGFIIQHNVT  224 (251)
T ss_dssp             SSSSCTTHHHHHHHT-TTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhcchh-HHHHHHHHHHHHhc
Confidence            355678899999999 99998776666554

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=87.95  E-value=0.035  Score=46.70  Aligned_cols=25  Identities=16%  Similarity=0.022  Sum_probs=19.7

Q ss_pred             chhhHhhcCcchhhHHHHHHHHhhc
Q 029906          159 LPEAELLNGVTDPSFSFSVYLYDAS  183 (185)
Q Consensus       159 LpeAElLNGRaAMiGF~~a~l~Eal  183 (185)
                      +.++|+.|||.||++++-.++.|.+
T Consensus        83 ~r~~El~hgR~AMla~~G~~~~e~~  107 (241)
T 2wsc_1           83 YKESELIHCRWAMLAVPGILVPEAL  107 (241)
T ss_dssp             SHHHHHHHHHHHTTTSTTSSSTTCC
T ss_pred             HHHHHHhhchhHHhhhhcccchhhc
Confidence            3789999999999998765555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	95.48
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	94.03

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=95.48  E-value=0.0011  Score=51.52  Aligned_cols=28  Identities=18%  Similarity=0.132  Sum_probs=21.8

Q ss_pred             cCchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906          157 FHLPEAELLNGVTDPSFSFSVYLYDASM  184 (185)
Q Consensus       157 ~hLpeAElLNGRaAMiGF~~a~l~Ealt  184 (185)
                      ..+..+|+-|||+||||++-.++=|.+|
T Consensus       161 ~~~k~kElkNGRLAMlAi~G~~~qe~vt  188 (218)
T d1rwta_         161 AELKVKEIKNGRLAMFSMFGFFVQAIVT  188 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhhhhc
Confidence            3456799999999999998766666554

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=94.03  E-value=0.0055  Score=47.46  Aligned_cols=24  Identities=8%  Similarity=-0.079  Sum_probs=21.7

Q ss_pred             hhhHhhcCcchhhHHHHHHHHhhc
Q 029906          160 PEAELLNGVTDPSFSFSVYLYDAS  183 (185)
Q Consensus       160 peAElLNGRaAMiGF~~a~l~Eal  183 (185)
                      .|||+-+||+||++++-.++.|.+
T Consensus        49 ReaELKHGR~AMLA~vG~~~~E~~   72 (218)
T d1rwta_          49 RELEVIHCRWAMLGALGCVFPELL   72 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhceehHhhhcceeehhhh
Confidence            699999999999999988888864