Citrus Sinensis ID: 029908

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTIIDKIMSWIFFWFVF
Secondary Structure (PSIPRED)
cHHHHHcccEEEEcccccccccccHHHHHHHHHHHHHHccEEEccHHHHHHHHccccccHHHHHHHccccccEEEEEcccccEEEEEcccEEEEccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHcccEEEEcccccccccccHHHHHHHHHHHHHHccEEEEcHHHHHHHcccccHHHHHHHHHHHccccEEEEEcccccEEEEEcccEEEEccEEEEEEcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MKAAKEAGAllsydpnlrlplwpspeeAREQIMSIWDKAEVIKVSDVElefltgsdkiddesalslwhPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKtvdttgagdAFVGALLCKIvddqsaiedePRLREILKFANAcgalsttkkgaipalptESEALALLKRSTIIDKIMSWIFFWFVF
Flexible Loop (DISEMBL)
mkaakeagallsydpnlrlpLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGalsttkkgaipalpTESEALALLKRSTIIDKIMSWIFFWFVF
Low Complexity Region (SEG)
MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTIIDKIMSWIFFWFVF
Disordered region (IsUnstruct)
***************NLRLPLW*******EQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTIIDKIMSWIFFWFV*
Disordered Region (DISOPRED)
MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTIIDKIMSWIFFWFVF
Disordered Region (DISEMBL)
MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTIIDKIMSWIFFWFVF
Disordered Region (DISPRO)
MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTIIDKIMSWIFFWFVF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTIIDKIMSWIFFWFVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q9M1B9	326	Probable fructokinase-4 O	yes	no	0.902	0.512	0.808	2e-76
Q9LNE3	329	Probable fructokinase-2 O	no	no	0.902	0.507	0.784	2e-75
Q42896	328	Fructokinase-2 OS=Solanum	N/A	no	0.902	0.509	0.802	3e-75
Q9SID0	325	Probable fructokinase-1 O	no	no	0.908	0.516	0.779	5e-75
Q7XJ81	328	Fructokinase-2 OS=Solanum	N/A	no	0.902	0.509	0.796	2e-74
Q9LNE4	345	Probable fructokinase-3 O	no	no	0.902	0.484	0.760	8e-72
P37829	319	Fructokinase OS=Solanum t	N/A	no	0.848	0.492	0.760	8e-68
Q6XZ79	323	Fructokinase-1 OS=Zea may	N/A	no	0.913	0.523	0.656	2e-63
Q0JGZ6	323	Fructokinase-1 OS=Oryza s	no	no	0.913	0.523	0.633	1e-61
A2WXV8	323	Fructokinase-1 OS=Oryza s	N/A	no	0.913	0.523	0.633	2e-61

>sp|Q9M1B9|SCRK4_ARATH Probable fructokinase-4 OS=Arabidopsis thaliana GN=At3g59480 PE=2 SV=1

 Score =  284 bits (727), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 135/167 (80%), Positives = 152/167 (91%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKEAGALLSYDPNLRLPLWPS EEA++QI+SIWDKAEVIKVSD EL FLTGSDK+DD
Sbjct: 158 MEVAKEAGALLSYDPNLRLPLWPSKEEAQKQILSIWDKAEVIKVSDEELMFLTGSDKVDD 217

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           E+ALSLWH NLKLLLVTLGE GCRYYTKSF+G+VD F V  VDTTGAGD+FVGALLCKIV
Sbjct: 218 ETALSLWHSNLKLLLVTLGEKGCRYYTKSFRGSVDPFHVDAVDTTGAGDSFVGALLCKIV 277

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
           DD++ +EDE RLRE+L+ ANACGA++TTKKGAIPALPTESE  +LLK
Sbjct: 278 DDRAVLEDEARLREVLRLANACGAITTTKKGAIPALPTESEVQSLLK 324

May play an important role in maintaining the flux of carbon towards starch formation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4

>sp|Q9LNE3|SCRK2_ARATH Probable fructokinase-2 OS=Arabidopsis thaliana GN=At1g06030 PE=2 SV=1

 Score =  281 bits (718), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 131/167 (78%), Positives = 152/167 (91%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKEAGALLSYDPNLR PLWPSPEEAR+QIMSIWDKA++IKVSDVELEFLTG+  IDD
Sbjct: 159 MEVAKEAGALLSYDPNLREPLWPSPEEARKQIMSIWDKADIIKVSDVELEFLTGNKTIDD 218

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           E+A+SLWHPNLKLLLVTLGE+GCRYYTK F G+V+ F V  VDTTGAGD+FVGALL +IV
Sbjct: 219 ETAMSLWHPNLKLLLVTLGENGCRYYTKDFHGSVETFHVDAVDTTGAGDSFVGALLNQIV 278

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
           DDQS +E+E RLR++L+FANACGA++TTKKGAIPALPT+ EAL+ LK
Sbjct: 279 DDQSVLEEEERLRKVLRFANACGAITTTKKGAIPALPTDCEALSFLK 325

May play an important role in maintaining the flux of carbon towards starch formation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

>sp|Q42896|SCRK2_SOLLC Fructokinase-2 OS=Solanum lycopersicum GN=FRK2 PE=2 SV=2

 Score =  280 bits (717), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 134/167 (80%), Positives = 149/167 (89%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKEAGALLSYDPNLRLPLWPS EEA++QI SIWD A+VIKVSDVELEFLTGS+KIDD
Sbjct: 159 MEVAKEAGALLSYDPNLRLPLWPSAEEAKKQIKSIWDSADVIKVSDVELEFLTGSNKIDD 218

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           ESA+SLWHPNLKLLLVTLGE GC YYTK F G V  F VKTVDTTGAGD+FVGALL KIV
Sbjct: 219 ESAMSLWHPNLKLLLVTLGEKGCNYYTKKFHGTVGGFHVKTVDTTGAGDSFVGALLTKIV 278

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
           DDQ+ +EDE RL+E+L+F+ ACGA++TTKKGAIPALPT SEAL LLK
Sbjct: 279 DDQTILEDEARLKEVLRFSCACGAITTTKKGAIPALPTASEALTLLK 325

May play an important role in maintaining the flux of carbon towards starch formation.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

>sp|Q9SID0|SCRK1_ARATH Probable fructokinase-1 OS=Arabidopsis thaliana GN=At2g31390 PE=2 SV=1

 Score =  280 bits (715), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 131/168 (77%), Positives = 153/168 (91%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKEAGALLSYDPNLR PLWPS EEA+ QIMSIWDKAE+IKVSDVELEFLTGS+KIDD
Sbjct: 157 MEVAKEAGALLSYDPNLREPLWPSKEEAKTQIMSIWDKAEIIKVSDVELEFLTGSNKIDD 216

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           E+AL+LWHPNLKLLLVTLGE GCRYYTK+FKGAVD F V  VDTTGAGD+FVGALL +IV
Sbjct: 217 ETALTLWHPNLKLLLVTLGEKGCRYYTKTFKGAVDPFHVNAVDTTGAGDSFVGALLNQIV 276

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
           DD+S +EDE RLR++L+FANACGA++TTKKGAIPALP+++E  + L++
Sbjct: 277 DDRSVLEDEERLRKVLRFANACGAITTTKKGAIPALPSDAEVRSFLEK 324

May play an important role in maintaining the flux of carbon towards starch formation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

>sp|Q7XJ81|SCRK2_SOLHA Fructokinase-2 OS=Solanum habrochaites GN=FRK2 PE=2 SV=1

 Score =  278 bits (710), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/167 (79%), Positives = 148/167 (88%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKEAGALLSYDPNLRLPLWPS EEA++QI SIWD A+VIKVSDVELEFLTGS+KIDD
Sbjct: 159 MEVAKEAGALLSYDPNLRLPLWPSAEEAKKQIKSIWDSADVIKVSDVELEFLTGSNKIDD 218

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           ESA+SLWHPNLKLLLVTLGE GC YYTK F G V  F VKTVDTTGAGD+FVGALL KIV
Sbjct: 219 ESAMSLWHPNLKLLLVTLGEKGCNYYTKKFHGTVGGFHVKTVDTTGAGDSFVGALLTKIV 278

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
           DDQ+ + DE RL+E+L+F+ ACGA++TTKKGAIPALPT SEAL LLK
Sbjct: 279 DDQTILADEARLKEVLRFSCACGAITTTKKGAIPALPTASEALTLLK 325

May play an important role in maintaining the flux of carbon towards starch formation.

Solanum habrochaites (taxid: 62890)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

>sp|Q9LNE4|SCRK3_ARATH Probable fructokinase-3 OS=Arabidopsis thaliana GN=At1g06020 PE=2 SV=1

 Score =  269 bits (688), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 127/167 (76%), Positives = 148/167 (88%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKEAGALLSYDPNLR PLWPSPEEAR QIMSIWDKA++IKVSDVELEFLT +  +DD
Sbjct: 158 MEVAKEAGALLSYDPNLREPLWPSPEEARTQIMSIWDKADIIKVSDVELEFLTENKTMDD 217

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           ++A+SLWHPNLKLLLVTLGE GC Y+TK F G+V+ F V  VDTTGAGD+FVGALL +IV
Sbjct: 218 KTAMSLWHPNLKLLLVTLGEKGCTYFTKKFHGSVETFHVDAVDTTGAGDSFVGALLQQIV 277

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
           DDQS +EDE RLR++L+FANACGA++TTKKGAIPALPT+ EAL+ LK
Sbjct: 278 DDQSVLEDEARLRKVLRFANACGAITTTKKGAIPALPTDIEALSFLK 324

May play an important role in maintaining the flux of carbon towards starch formation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

>sp|P37829|SCRK_SOLTU Fructokinase OS=Solanum tuberosum PE=2 SV=1

 Score =  256 bits (653), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 127/167 (76%), Positives = 140/167 (83%), Gaps = 10/167 (5%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKEAGALLSYDPNLRLPLW S  EAR+           IKVSDVELEFLTGSDKIDD
Sbjct: 160 MEVAKEAGALLSYDPNLRLPLWSSEAEARK----------AIKVSDVELEFLTGSDKIDD 209

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           ESA+SLWHPNLKLLLVTLGE GC YYTK F G+V  F VKTVDTTGAGD+FVGALL KIV
Sbjct: 210 ESAMSLWHPNLKLLLVTLGEKGCNYYTKKFHGSVGGFHVKTVDTTGAGDSFVGALLTKIV 269

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
           DDQ+ +EDE RL+E+L+F+ ACGA++TTKKGAIPALPTESEAL LLK
Sbjct: 270 DDQAILEDEARLKEVLRFSCACGAITTTKKGAIPALPTESEALTLLK 316

May play an important role in maintaining the flux of carbon towards starch formation.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

>sp|Q6XZ79|SCRK1_MAIZE Fructokinase-1 OS=Zea mays GN=FRK1 PE=1 SV=1

 Score =  241 bits (615), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/169 (65%), Positives = 143/169 (84%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKEAGALLSYDPNLR  LWPS EEAR QI+SIWD+A+++KVS+VELEFLTG D ++D
Sbjct: 155 MEIAKEAGALLSYDPNLREALWPSREEARTQILSIWDQADIVKVSEVELEFLTGIDSVED 214

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           +  + LW P +KLLLVTLG+ GC+YY + F GAV +F+V+ VDTTGAGDAFVGALL +IV
Sbjct: 215 DVVMKLWRPTMKLLLVTLGDQGCKYYARDFHGAVPSFKVQQVDTTGAGDAFVGALLQRIV 274

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRS 169
            D S+++DE +L E +KFANACGA++TTKKGAIP+LPTE+E L L++++
Sbjct: 275 KDPSSLQDEKKLVESIKFANACGAITTTKKGAIPSLPTEAEVLQLIEKA 323

May play an important role in maintaining the flux of carbon towards starch formation in endosperm. May also be involved in a sugar-sensing pathway.

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

>sp|Q0JGZ6|SCRK1_ORYSJ Fructokinase-1 OS=Oryza sativa subsp. japonica GN=FRK1 PE=1 SV=2

 Score =  235 bits (600), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 107/169 (63%), Positives = 141/169 (83%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKEAGALLSYDPNLR  LWPS EEAR +I+SIWD+A+++KVS+VELEFLTG D ++D
Sbjct: 155 MEIAKEAGALLSYDPNLREALWPSREEARTKILSIWDQADIVKVSEVELEFLTGIDSVED 214

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           +  + LW P +KLLLVTLG+ GC+YY + F+GAV +++V+ VDTTGAGDAFVGALL +IV
Sbjct: 215 DVVMKLWRPTMKLLLVTLGDQGCKYYARDFRGAVPSYKVQQVDTTGAGDAFVGALLRRIV 274

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRS 169
            D S+++D+ +L E +KFANACGA++ TKKGAIP+LPTE E L L++ +
Sbjct: 275 QDPSSLQDQKKLEEAIKFANACGAITATKKGAIPSLPTEVEVLKLMESA 323

May play an important role in maintaining the flux of carbon towards starch formation. May also be involved in a sugar-sensing pathway.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

>sp|A2WXV8|SCRK1_ORYSI Fructokinase-1 OS=Oryza sativa subsp. indica GN=FRK1 PE=1 SV=1

 Score =  234 bits (598), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/169 (63%), Positives = 140/169 (82%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKEAGALLSYDPNLR  LWPS EEAR +I+SIWD A+++KVS+VELEFLTG D ++D
Sbjct: 155 MEIAKEAGALLSYDPNLREALWPSREEARTKILSIWDHADIVKVSEVELEFLTGIDSVED 214

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           +  + LW P +KLLLVTLG+ GC+YY + F+GAV +++V+ VDTTGAGDAFVGALL +IV
Sbjct: 215 DVVMKLWRPTMKLLLVTLGDQGCKYYARDFRGAVPSYKVQQVDTTGAGDAFVGALLRRIV 274

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRS 169
            D S+++D+ +L E +KFANACGA++ TKKGAIP+LPTE E L L++ +
Sbjct: 275 QDPSSLQDQKKLEEAIKFANACGAITATKKGAIPSLPTEVEVLKLMESA 323

May play an important role in maintaining the flux of carbon towards starch formation. May also be involved in a sugar-sensing pathway.

Oryza sativa subsp. indica (taxid: 39946)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
255585331	330	fructokinase, putative [Ricinus communis	0.918	0.515	0.835	3e-80
225433918	330	PREDICTED: fructokinase-2 [Vitis vinifer	0.902	0.506	0.838	3e-78
356557199	330	PREDICTED: fructokinase-2-like [Glycine	0.902	0.506	0.832	5e-78
297743806	207	unnamed protein product [Vitis vinifera]	0.897	0.801	0.843	5e-78
356538893	331	PREDICTED: fructokinase-2-like [Glycine	0.913	0.510	0.822	2e-77
356550378	331	PREDICTED: fructokinase-2-like [Glycine	0.918	0.513	0.817	3e-77
356545453	330	PREDICTED: fructokinase-2-like [Glycine	0.913	0.512	0.816	4e-77
33329198	328	putative fructokinase 2 [Petunia integri	0.913	0.515	0.834	4e-77
33329200	328	putative fructokinase 2 [Petunia integri	0.913	0.515	0.834	5e-77
255641611	170	unknown [Glycine max]	0.902	0.982	0.832	1e-76

>gi|255585331|ref|XP_002533363.1| fructokinase, putative [Ricinus communis] gi|223526803|gb|EEF29025.1| fructokinase, putative [Ricinus communis]

 Score =  302 bits (774), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 142/170 (83%), Positives = 160/170 (94%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AK AGALLSYDPNLRLPLWPS E AREQIMSIWDKA++IKVSDVELEFLTGSDKIDD
Sbjct: 161 MEEAKNAGALLSYDPNLRLPLWPSAEYAREQIMSIWDKADIIKVSDVELEFLTGSDKIDD 220

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           ESALSLWHPNLKLLLVTLGE+GCRYYTK+F G+VDAF VKTVDTTGAGD+FVGALLCKIV
Sbjct: 221 ESALSLWHPNLKLLLVTLGENGCRYYTKNFHGSVDAFHVKTVDTTGAGDSFVGALLCKIV 280

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRST 170
           DD S +E+EPRLRE+L+FANACGA++TTKKGAIPALPTE++ L+L+K S+
Sbjct: 281 DDLSVLEEEPRLREVLRFANACGAITTTKKGAIPALPTEADVLSLMKASS 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433918|ref|XP_002268097.1| PREDICTED: fructokinase-2 [Vitis vinifera] gi|147820522|emb|CAN67659.1| hypothetical protein VITISV_012475 [Vitis vinifera]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 140/167 (83%), Positives = 154/167 (92%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKEAGALLSYDPNLRLPLWPS EEAREQIMSIW+KAEVIKVSDVELEFLTGSDK+DD
Sbjct: 162 MEVAKEAGALLSYDPNLRLPLWPSAEEAREQIMSIWEKAEVIKVSDVELEFLTGSDKVDD 221

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           E+ALSLWHP LKL LVTLGE GCRYYTK+F GAV+ F VKTVDTTGAGD+FVGALLCKIV
Sbjct: 222 ETALSLWHPGLKLFLVTLGEKGCRYYTKNFHGAVEGFHVKTVDTTGAGDSFVGALLCKIV 281

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
           DDQS +EDE RLRE+LKFANACGA++TTKKGAIPALP E++ L+LL 
Sbjct: 282 DDQSVLEDEARLREVLKFANACGAITTTKKGAIPALPAEADVLSLLH 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557199|ref|XP_003546905.1| PREDICTED: fructokinase-2-like [Glycine max]

 Score =  295 bits (755), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 139/167 (83%), Positives = 157/167 (94%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKEAG LLSYDPNLRLPLWPSPEEAR+QI+SIW+KA++IKVSDVELEFLTGSDKIDD
Sbjct: 162 MEVAKEAGCLLSYDPNLRLPLWPSPEEARKQILSIWEKADLIKVSDVELEFLTGSDKIDD 221

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           ESALSLWHPNLKLLLVTLGEHG RYYT++FKG+VDAF V TVDTTGAGD+FVGALL KIV
Sbjct: 222 ESALSLWHPNLKLLLVTLGEHGSRYYTENFKGSVDAFHVNTVDTTGAGDSFVGALLSKIV 281

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
           DDQS +EDEPRLRE+LK+ANACGA++TT+KGAIPALP E +AL L+K
Sbjct: 282 DDQSILEDEPRLREVLKYANACGAITTTQKGAIPALPKEEDALKLIK 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743806|emb|CBI36689.3| unnamed protein product [Vitis vinifera]

 Score =  295 bits (755), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 140/166 (84%), Positives = 154/166 (92%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKEAGALLSYDPNLRLPLWPS EEAREQIMSIW+KAEVIKVSDVELEFLTGSDK+DD
Sbjct: 39  MEVAKEAGALLSYDPNLRLPLWPSAEEAREQIMSIWEKAEVIKVSDVELEFLTGSDKVDD 98

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           E+ALSLWHP LKL LVTLGE GCRYYTK+F GAV+ F VKTVDTTGAGD+FVGALLCKIV
Sbjct: 99  ETALSLWHPGLKLFLVTLGEKGCRYYTKNFHGAVEGFHVKTVDTTGAGDSFVGALLCKIV 158

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALL 166
           DDQS +EDE RLRE+LKFANACGA++TTKKGAIPALP E++ L+LL
Sbjct: 159 DDQSVLEDEARLREVLKFANACGAITTTKKGAIPALPAEADVLSLL 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538893|ref|XP_003537935.1| PREDICTED: fructokinase-2-like [Glycine max]

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 139/169 (82%), Positives = 156/169 (92%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ A+EAG LLSYDPNLRLPLWPS EEAR+QI+SIWDKA+VIKVSDVELEFLTGSDKIDD
Sbjct: 163 MEVAREAGCLLSYDPNLRLPLWPSAEEARQQILSIWDKADVIKVSDVELEFLTGSDKIDD 222

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
            SALSLWHPNLKLLLVTLGEHG RYYTK+F G+V+AF V TVDTTGAGD+FVGALL KIV
Sbjct: 223 ASALSLWHPNLKLLLVTLGEHGSRYYTKNFHGSVEAFHVSTVDTTGAGDSFVGALLSKIV 282

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRS 169
           DDQS +EDE RLRE+LKFANACGA++TTKKGAIPALPTE++AL L+K +
Sbjct: 283 DDQSVLEDEARLREVLKFANACGAITTTKKGAIPALPTEADALNLIKEA 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550378|ref|XP_003543564.1| PREDICTED: fructokinase-2-like [Glycine max]

 Score =  292 bits (748), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 139/170 (81%), Positives = 155/170 (91%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKE+G LLSYDPNLRLPLWPS EEAR+QI+SIW+KA++IKVSD ELEFLTGSDKIDD
Sbjct: 162 MEVAKESGCLLSYDPNLRLPLWPSAEEARKQILSIWEKADLIKVSDAELEFLTGSDKIDD 221

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           ESALSLWHPNLKLLLVTLGEHG RYYTKSFKG+VDAF V TVDTTGAGD+FVGALL KIV
Sbjct: 222 ESALSLWHPNLKLLLVTLGEHGSRYYTKSFKGSVDAFHVNTVDTTGAGDSFVGALLAKIV 281

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRST 170
           DDQS +EDEPRLRE+LKFANACGA++TT+KGAIPALP E  AL L+K  +
Sbjct: 282 DDQSILEDEPRLREVLKFANACGAITTTQKGAIPALPKEEAALKLIKGGS 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545453|ref|XP_003541157.1| PREDICTED: fructokinase-2-like [Glycine max]

 Score =  292 bits (748), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 138/169 (81%), Positives = 156/169 (92%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ A+EAG LLSYDPNLRLPLWPS EEAR+QI+SIWDKA+VIKVSDVELEFLTGSDKIDD
Sbjct: 162 MEVAREAGCLLSYDPNLRLPLWPSAEEARQQILSIWDKADVIKVSDVELEFLTGSDKIDD 221

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
            SALSLWHPNLKLLLVTLGEHG RYYTK+F+G+V+AF V TVDTTGAGD+FVGALL KIV
Sbjct: 222 ASALSLWHPNLKLLLVTLGEHGSRYYTKNFRGSVEAFHVNTVDTTGAGDSFVGALLSKIV 281

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRS 169
           DDQS +EDE RLRE+LKF NACGA++TTKKGAIPALPTE++AL L+K +
Sbjct: 282 DDQSILEDEARLREVLKFTNACGAITTTKKGAIPALPTEADALKLIKEA 330

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33329198|gb|AAQ09999.1| putative fructokinase 2 [Petunia integrifolia subsp. inflata]

 Score =  292 bits (747), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 141/169 (83%), Positives = 153/169 (90%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKEAGALLSYDPNLRLPLWPS EEAR+QI SIWDKA+VIKVSD ELEFLTGSDKIDD
Sbjct: 159 MEVAKEAGALLSYDPNLRLPLWPSAEEARKQIKSIWDKADVIKVSDNELEFLTGSDKIDD 218

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           ESA+SLWHPNLKLLLVTLGE GCRYYTK+F G V+ F VKTVDTTGAGD+FVGALL KIV
Sbjct: 219 ESAMSLWHPNLKLLLVTLGEKGCRYYTKNFHGGVEGFHVKTVDTTGAGDSFVGALLTKIV 278

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRS 169
           DDQS +EDE RL+E+L FA ACGA++TTKKGAIPALPTESEAL LLKR 
Sbjct: 279 DDQSILEDEARLKEVLTFACACGAITTTKKGAIPALPTESEALTLLKRG 327

Source: Petunia integrifolia subsp. inflata

Species: Petunia integrifolia

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33329200|gb|AAQ10000.1| putative fructokinase 2 [Petunia integrifolia subsp. inflata]

 Score =  292 bits (747), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 141/169 (83%), Positives = 153/169 (90%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKEAGALLSYDPNLRLPLWPS EEAR+QI SIWDKA+VIKVSD ELEFLTGSDKIDD
Sbjct: 159 MEVAKEAGALLSYDPNLRLPLWPSAEEARKQIKSIWDKADVIKVSDNELEFLTGSDKIDD 218

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           ESA+SLWHPNLKLLLVTLGE GCRYYTK+F G V+ F VKTVDTTGAGD+FVGALL KIV
Sbjct: 219 ESAMSLWHPNLKLLLVTLGEKGCRYYTKNFHGGVEGFHVKTVDTTGAGDSFVGALLTKIV 278

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRS 169
           DDQS +EDE RL+E+L FA ACGA++TTKKGAIPALPTESEAL LLKR 
Sbjct: 279 DDQSILEDEARLKEVLTFACACGAITTTKKGAIPALPTESEALTLLKRG 327

Source: Petunia integrifolia subsp. inflata

Species: Petunia integrifolia

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641611|gb|ACU21078.1| unknown [Glycine max]

 Score =  290 bits (743), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 139/167 (83%), Positives = 154/167 (92%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AKE+G LLSYDPNLRLPLWPS EEAR+QI+SIW+KA++IKVSD ELEFLTGSDKIDD
Sbjct: 1   MEVAKESGCLLSYDPNLRLPLWPSAEEARKQILSIWEKADLIKVSDAELEFLTGSDKIDD 60

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           ESALSLWHPNLKLLLVTLGEHG RYYTKSFKG+VDAF V TVDTTGAGD+FVGALL KIV
Sbjct: 61  ESALSLWHPNLKLLLVTLGEHGSRYYTKSFKGSVDAFHVNTVDTTGAGDSFVGALLAKIV 120

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
           DDQS +EDEPRLRE+LKFANACGA++TT+KGAIPALP E  AL L+K
Sbjct: 121 DDQSILEDEPRLREVLKFANACGAITTTQKGAIPALPKEEAALKLIK 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2097553	326	AT3G59480 [Arabidopsis thalian	0.902	0.512	0.808	2.6e-70
TAIR|locus:2198831	329	AT1G06030 [Arabidopsis thalian	0.902	0.507	0.784	6.3e-69
TAIR|locus:2061320	325	AT2G31390 [Arabidopsis thalian	0.908	0.516	0.779	1e-68
TAIR|locus:2198821	345	AT1G06020 [Arabidopsis thalian	0.902	0.484	0.760	3.6e-66
TAIR|locus:2122789	324	AT4G10260 [Arabidopsis thalian	0.902	0.515	0.628	3.1e-51
TAIR|locus:2028987	384	AT1G66430 [Arabidopsis thalian	0.891	0.429	0.621	1.3e-50
TAIR|locus:2165361	343	AT5G51830 [Arabidopsis thalian	0.913	0.492	0.598	4.1e-49
TAIR|locus:2011897	146	AT1G50390 [Arabidopsis thalian	0.567	0.719	0.682	6.5e-35
UNIPROTKB|Q9KLT5	323	VCA0656 "Fructokinase" [Vibrio	0.870	0.498	0.404	4.5e-27
TIGR_CMR|VC_A0656	323	VC_A0656 "fructokinase" [Vibri	0.870	0.498	0.404	4.5e-27

TAIR|locus:2097553 AT3G59480 [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 135/167 (80%), Positives = 152/167 (91%)

Query:     1 MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
             M+ AKEAGALLSYDPNLRLPLWPS EEA++QI+SIWDKAEVIKVSD EL FLTGSDK+DD
Sbjct:   158 MEVAKEAGALLSYDPNLRLPLWPSKEEAQKQILSIWDKAEVIKVSDEELMFLTGSDKVDD 217

Query:    61 ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
             E+ALSLWH NLKLLLVTLGE GCRYYTKSF+G+VD F V  VDTTGAGD+FVGALLCKIV
Sbjct:   218 ETALSLWHSNLKLLLVTLGEKGCRYYTKSFRGSVDPFHVDAVDTTGAGDSFVGALLCKIV 277

Query:   121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
             DD++ +EDE RLRE+L+ ANACGA++TTKKGAIPALPTESE  +LLK
Sbjct:   278 DDRAVLEDEARLREVLRLANACGAITTTKKGAIPALPTESEVQSLLK 324

GO:0004747 "ribokinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006014 "D-ribose metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

TAIR|locus:2198831 AT1G06030 [Arabidopsis thaliana (taxid:3702)]

 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 131/167 (78%), Positives = 152/167 (91%)

Query:     1 MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
             M+ AKEAGALLSYDPNLR PLWPSPEEAR+QIMSIWDKA++IKVSDVELEFLTG+  IDD
Sbjct:   159 MEVAKEAGALLSYDPNLREPLWPSPEEARKQIMSIWDKADIIKVSDVELEFLTGNKTIDD 218

Query:    61 ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
             E+A+SLWHPNLKLLLVTLGE+GCRYYTK F G+V+ F V  VDTTGAGD+FVGALL +IV
Sbjct:   219 ETAMSLWHPNLKLLLVTLGENGCRYYTKDFHGSVETFHVDAVDTTGAGDSFVGALLNQIV 278

Query:   121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
             DDQS +E+E RLR++L+FANACGA++TTKKGAIPALPT+ EAL+ LK
Sbjct:   279 DDQSVLEEEERLRKVLRFANACGAITTTKKGAIPALPTDCEALSFLK 325

GO:0004747 "ribokinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006014 "D-ribose metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2061320 AT2G31390 [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 131/168 (77%), Positives = 153/168 (91%)

Query:     1 MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
             M+ AKEAGALLSYDPNLR PLWPS EEA+ QIMSIWDKAE+IKVSDVELEFLTGS+KIDD
Sbjct:   157 MEVAKEAGALLSYDPNLREPLWPSKEEAKTQIMSIWDKAEIIKVSDVELEFLTGSNKIDD 216

Query:    61 ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
             E+AL+LWHPNLKLLLVTLGE GCRYYTK+FKGAVD F V  VDTTGAGD+FVGALL +IV
Sbjct:   217 ETALTLWHPNLKLLLVTLGEKGCRYYTKTFKGAVDPFHVNAVDTTGAGDSFVGALLNQIV 276

Query:   121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
             DD+S +EDE RLR++L+FANACGA++TTKKGAIPALP+++E  + L++
Sbjct:   277 DDRSVLEDEERLRKVLRFANACGAITTTKKGAIPALPSDAEVRSFLEK 324

GO:0004747 "ribokinase activity" evidence=IEA

GO:0006014 "D-ribose metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2198821 AT1G06020 [Arabidopsis thaliana (taxid:3702)]

 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 127/167 (76%), Positives = 148/167 (88%)

Query:     1 MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
             M+ AKEAGALLSYDPNLR PLWPSPEEAR QIMSIWDKA++IKVSDVELEFLT +  +DD
Sbjct:   158 MEVAKEAGALLSYDPNLREPLWPSPEEARTQIMSIWDKADIIKVSDVELEFLTENKTMDD 217

Query:    61 ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
             ++A+SLWHPNLKLLLVTLGE GC Y+TK F G+V+ F V  VDTTGAGD+FVGALL +IV
Sbjct:   218 KTAMSLWHPNLKLLLVTLGEKGCTYFTKKFHGSVETFHVDAVDTTGAGDSFVGALLQQIV 277

Query:   121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
             DDQS +EDE RLR++L+FANACGA++TTKKGAIPALPT+ EAL+ LK
Sbjct:   278 DDQSVLEDEARLRKVLRFANACGAITTTKKGAIPALPTDIEALSFLK 324

GO:0004747 "ribokinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006014 "D-ribose metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

TAIR|locus:2122789 AT4G10260 [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 105/167 (62%), Positives = 126/167 (75%)

Query:     1 MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
             MK AK+AG LLSYDPN+RLPLWPS E A E I SIW++A++IKVSD E+ FLT  D   D
Sbjct:   154 MKTAKDAGVLLSYDPNVRLPLWPSTEAAIEGIKSIWNEADIIKVSDDEVTFLTRGDAEKD 213

Query:    61 ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
             +  LSL H  LKLL+VT GE GCRYYTK FKG V  + VK VDTTGAGD+FVGA L  + 
Sbjct:   214 DVVLSLMHDKLKLLIVTDGEKGCRYYTKKFKGRVPGYAVKAVDTTGAGDSFVGAFLVSLG 273

Query:   121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
              D S ++DE +L+E L FANACGA+ TT+KGAIPALPT ++A  L+K
Sbjct:   274 KDGSILDDEGKLKEALAFANACGAVCTTQKGAIPALPTPADAQKLMK 320

GO:0004747 "ribokinase activity" evidence=IEA

GO:0006014 "D-ribose metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

TAIR|locus:2028987 AT1G66430 [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 105/169 (62%), Positives = 127/169 (75%)

Query:     2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLT-GSDKIDD 60
             KAAKEAG +LSYDPNLRLPLWPS + ARE+I+SIW+ A++IK+S+ E+ FLT G D  DD
Sbjct:   214 KAAKEAGVILSYDPNLRLPLWPSADNAREEILSIWETADIIKISEEEIVFLTKGEDPYDD 273

Query:    61 ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
                  L+HP LKLLLVT G  GCRYYTK F G V   +V  VDTTGAGDAFV  +L ++ 
Sbjct:   274 NVVRKLFHPKLKLLLVTEGPEGCRYYTKDFSGRVHGLKVDVVDTTGAGDAFVAGILSQLA 333

Query:   121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEAL--ALLK 167
             +D S ++DE RLRE L FANACGAL+   +GAIPALPT+ EA+  ALLK
Sbjct:   334 NDLSLLQDEERLREALMFANACGALTVKVRGAIPALPTK-EAVHEALLK 381

GO:0004747 "ribokinase activity" evidence=IEA

GO:0006014 "D-ribose metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2165361 AT5G51830 [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 103/172 (59%), Positives = 131/172 (76%)

Query:     1 MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDK-ID 59
             MK AK AG+LLSYDPNLRLPLWPS E AR++IMSIW+ A+VIK+S+ E+ FLTG D   D
Sbjct:   171 MKIAKAAGSLLSYDPNLRLPLWPSEEAARKEIMSIWNLADVIKISEDEITFLTGGDDPYD 230

Query:    60 DESALS-LWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCK 118
             D+  L  L+HPNLKLL+V+ G +GCRYYT+ FKG V   +VK VDTTGAGDAFV  LL  
Sbjct:   231 DDVVLQKLFHPNLKLLVVSEGPNGCRYYTQEFKGRVGGVKVKPVDTTGAGDAFVSGLLNS 290

Query:   119 IVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRST 170
             +  D + ++DE +LRE L FANACGA++ T++GAIPA+P+  +A+  L  ST
Sbjct:   291 LASDLTLLKDEKKLREALLFANACGAITVTERGAIPAMPS-MDAVQDLLSST 341

GO:0004747 "ribokinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006014 "D-ribose metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2011897 AT1G50390 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 73/107 (68%), Positives = 89/107 (83%)

Query:    64 LSLWHPN--LKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVD 121
             +S+W     +KLLLVTLGE GCRYYTK F G+V+ F V  VDTTGAGD+FVGALL +IVD
Sbjct:    36 MSIWDKADIIKLLLVTLGEKGCRYYTKDFHGSVETFHVDAVDTTGAGDSFVGALLNQIVD 95

Query:   122 DQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
             DQS +E+E RLR++L+ ANACGA++TTKKGAIPALPT+ EAL+ LKR
Sbjct:    96 DQSVLEEEERLRKVLRIANACGAITTTKKGAIPALPTDCEALSFLKR 142

GO:0005737 "cytoplasm" evidence=ISM

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|Q9KLT5 VCA0656 "Fructokinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 66/163 (40%), Positives = 100/163 (61%)

Query:     5 KEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL 64
             KE G  +S+DPNLR  +W  P+E +  +M     A+V+K S+ EL+FLTG+  I+ E   
Sbjct:   163 KEVGGYVSFDPNLREEVWSEPQELQATVMRAVGLADVVKFSEEELQFLTGTQSIE-EGLQ 221

Query:    65 SLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQS 124
             ++    + L++VTLG  G    T + +  V    VK +DTTGAGDAFVG LL ++   Q 
Sbjct:   222 AIADFQIPLVVVTLGAKGALVVTPNSRQIVSGKAVKPIDTTGAGDAFVGGLLYRLSVAQD 281

Query:   125 AIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
                ++  + + +K+AN CGAL+TT+KGA+ ALP ++   A L+
Sbjct:   282 W-HNQATILDAVKWANGCGALATTQKGAMTALPNQAALYAFLE 323

GO:0006000 "fructose metabolic process" evidence=ISS

GO:0008865 "fructokinase activity" evidence=ISS

TIGR_CMR|VC_A0656 VC_A0656 "fructokinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 66/163 (40%), Positives = 100/163 (61%)

Query:     5 KEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL 64
             KE G  +S+DPNLR  +W  P+E +  +M     A+V+K S+ EL+FLTG+  I+ E   
Sbjct:   163 KEVGGYVSFDPNLREEVWSEPQELQATVMRAVGLADVVKFSEEELQFLTGTQSIE-EGLQ 221

Query:    65 SLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQS 124
             ++    + L++VTLG  G    T + +  V    VK +DTTGAGDAFVG LL ++   Q 
Sbjct:   222 AIADFQIPLVVVTLGAKGALVVTPNSRQIVSGKAVKPIDTTGAGDAFVGGLLYRLSVAQD 281

Query:   125 AIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
                ++  + + +K+AN CGAL+TT+KGA+ ALP ++   A L+
Sbjct:   282 W-HNQATILDAVKWANGCGALATTQKGAMTALPNQAALYAFLE 323

GO:0006000 "fructose metabolic process" evidence=ISS

GO:0008865 "fructokinase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M1B9	SCRK4_ARATH	2, ., 7, ., 1, ., 4	0.8083	0.9027	0.5122	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.4	0.824
3rd Layer	2.7.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
PLN02323	330	PLN02323, PLN02323, probable fructokinase	1e-115
cd01167	295	cd01167, bac_FRK, Fructokinases (FRKs) mainly from	1e-61
PRK09434	304	PRK09434, PRK09434, aminoimidazole riboside kinase	6e-45
COG0524	311	COG0524, RbsK, Sugar kinases, ribokinase family [C	5e-39
cd01166	294	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (Kdg	7e-34
pfam00294	298	pfam00294, PfkB, pfkB family carbohydrate kinase	1e-31
cd01174	292	cd01174, ribokinase, Ribokinase catalyses the phos	6e-31
PLN02543	496	PLN02543, PLN02543, pfkB-type carbohydrate kinase	4e-28
TIGR02152	293	TIGR02152, D_ribokin_bact, ribokinase	4e-24
PLN02967	581	PLN02967, PLN02967, kinase	5e-23
PTZ00292	326	PTZ00292, PTZ00292, ribokinase; Provisional	4e-19
PRK11142	306	PRK11142, PRK11142, ribokinase; Provisional	2e-18
cd01945	284	cd01945, ribokinase_group_B, Ribokinase-like subgr	3e-16
cd01942	279	cd01942, ribokinase_group_A, Ribokinase-like subgr	2e-15
cd00287	196	cd00287, ribokinase_pfkB_like, ribokinase/pfkB sup	9e-15
COG1105	310	COG1105, FruK, Fructose-1-phosphate kinase and rel	3e-11
TIGR03168	303	TIGR03168, 1-PFK, hexose kinase, 1-phosphofructoki	2e-10
PLN02341	470	PLN02341, PLN02341, pfkB-type carbohydrate kinase	5e-10
cd01168	312	cd01168, adenosine_kinase, Adenosine kinase (AK) c	7e-10
cd01947	265	cd01947, Guanosine_kinase_like, Guanosine kinase-l	1e-09
cd01944	289	cd01944, YegV_kinase_like, YegV-like sugar kinase	3e-09
TIGR03828	304	TIGR03828, pfkB, 1-phosphofructokinase	4e-08
cd01164	289	cd01164, FruK_PfkB_like, 1-phosphofructokinase (Fr	5e-08
cd01937	254	cd01937, ribokinase_group_D, Ribokinase-like subgr	6e-08
cd01941	288	cd01941, YeiC_kinase_like, YeiC-like sugar kinase	1e-07
cd01172	304	cd01172, RfaE_like, RfaE encodes a bifunctional AD	3e-07
cd01940	264	cd01940, Fructoselysine_kinase_like, Fructoselysin	9e-07
PLN02630	335	PLN02630, PLN02630, pfkB-type carbohydrate kinase	1e-06
cd01946	277	cd01946, ribokinase_group_C, Ribokinase-like subgr	4e-05
PRK09813	260	PRK09813, PRK09813, fructoselysine 6-kinase; Provi	2e-04
COG2240	281	COG2240, PdxK, Pyridoxal/pyridoxine/pyridoxamine k	8e-04
PLN02379	367	PLN02379, PLN02379, pfkB-type carbohydrate kinase	8e-04

>gnl|CDD|215183 PLN02323, PLN02323, probable fructokinase

 Score =  331 bits (850), Expect = e-115
 Identities = 121/171 (70%), Positives = 141/171 (82%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           MK AKEAGALLSYDPNLRLPLWPS E ARE IMSIWD+A++IKVSD E+EFLTG D  DD
Sbjct: 160 MKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGDDPDD 219

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           ++ + LWHPNLKLLLVT GE GCRYYTK FKG V+ F+VK VDTTGAGDAFVG LL ++ 
Sbjct: 220 DTVVKLWHPNLKLLLVTEGEEGCRYYTKDFKGRVEGFKVKAVDTTGAGDAFVGGLLSQLA 279

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTI 171
            D S +EDE RLRE L+FANACGA++TT++GAIPALPT+   L LLK++  
Sbjct: 280 KDLSLLEDEERLREALRFANACGAITTTERGAIPALPTKEAVLKLLKKAVA 330

Length = 330

>gnl|CDD|238572 cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate

 Score =  192 bits (491), Expect = 1e-61
 Identities = 77/153 (50%), Positives = 98/153 (64%), Gaps = 1/153 (0%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           ++AAK+AG L+S+DPNLR PLW   EEARE+I  + + A+++K+SD ELE L G +  + 
Sbjct: 144 LEAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGEEDPE- 202

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           E A  L    LKL+LVT G  G   YTK   G V    V+ VDTTGAGDAFV  LL +++
Sbjct: 203 EIAALLLLFGLKLVLVTRGADGALLYTKGGVGEVPGIPVEVVDTTGAGDAFVAGLLAQLL 262

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAI 153
                  DE  L E L+FANA GAL+ TK GAI
Sbjct: 263 SRGLLALDEDELAEALRFANAVGALTCTKAGAI 295

This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate. Length = 295

>gnl|CDD|236514 PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional

 Score =  150 bits (380), Expect = 6e-45
 Identities = 72/162 (44%), Positives = 94/162 (58%), Gaps = 3/162 (1%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+  K AG  +S+DPNLR  LW    E RE +      A+V+K+S+ EL FL+G+ +++D
Sbjct: 143 MRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGTSQLED 202

Query: 61  E-SALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKI 119
              AL+  +P + LLLVTLG  G   +T+       A  V  VDTTGAGDAFV  LL  +
Sbjct: 203 AIYALADRYP-IALLLVTLGAEGVLVHTRGQVQHFPAPSVDPVDTTGAGDAFVAGLLAGL 261

Query: 120 VDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESE 161
                   DE  L EI+  A ACGAL+TT KGA+ ALP   E
Sbjct: 262 S-QAGLWTDEAELAEIIAQAQACGALATTAKGAMTALPNRQE 302

Length = 304

>gnl|CDD|223598 COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]

 Score =  134 bits (340), Expect = 5e-39
 Identities = 63/171 (36%), Positives = 93/171 (54%), Gaps = 15/171 (8%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           ++ AK AG  +S+D N R  LW      RE +  +   A+++  ++ E E LTG ++  +
Sbjct: 151 LELAKAAGVTVSFDLNPRPALWD-----RELLEELLALADILFPNEEEAELLTGLEEDAE 205

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAV---DAFRVKTVDTTGAGDAFVGALLC 117
            +A  L    +K ++VTLG  G   +T   +  V    AF+VK VDTTGAGDAF    L 
Sbjct: 206 AAAALLLAKGVKTVVVTLGAEGAVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLA 265

Query: 118 KIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
            +++ +S       L E L+FANA  AL+ T+ GA P+LPT  E  A L+ 
Sbjct: 266 GLLEGKS-------LEEALRFANAAAALAVTRPGARPSLPTREEVEAFLEE 309

Length = 311

>gnl|CDD|238571 cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)

 Score =  121 bits (305), Expect = 7e-34
 Identities = 55/154 (35%), Positives = 77/154 (50%), Gaps = 9/154 (5%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           ++AAK  G  +S+D N R  LW S EEARE +  +    +++  S+ E E L G +   D
Sbjct: 149 LEAAKARGVTVSFDLNYRPKLW-SAEEAREALEELLPYVDIVLPSEEEAEALLGDEDPTD 207

Query: 61  -ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKI 119
                      +K ++V LG  G   YT   +  V A+ V+ VDTTGAGDAF    L  +
Sbjct: 208 AAERALALALGVKAVVVKLGAEGALVYTGGGRVFVPAYPVEVVDTTGAGDAFAAGFLAGL 267

Query: 120 VDDQSAIEDEPRLREILKFANACGALSTTKKGAI 153
           ++          L E L+FANA  AL  T+ G I
Sbjct: 268 LEGWD-------LEEALRFANAAAALVVTRPGDI 294

KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources. Length = 294

>gnl|CDD|215842 pfam00294, PfkB, pfkB family carbohydrate kinase

 Score =  115 bits (289), Expect = 1e-31
 Identities = 64/161 (39%), Positives = 84/161 (52%), Gaps = 18/161 (11%)

Query: 2   KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE 61
           +AAK  G    +DPNLR PLW       E ++ +   A+++K ++ ELE LTG    D E
Sbjct: 151 EAAKNGGT---FDPNLRDPLWAD----LEVLLELLPLADILKPNEEELEALTGEKINDIE 203

Query: 62  SALSLWHP---NLKLLLVTLGEHGCRYYTKSFKGAVDAFR-VKTVDTTGAGDAFVGALLC 117
            AL+  H     +K ++VTLG  G        +  V     VK VDTTGAGDAFV   L 
Sbjct: 204 EALAALHKHAKGVKTVVVTLGADGALLVDGDGEVHVPPVPKVKVVDTTGAGDAFVAGFLA 263

Query: 118 KIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPT 158
            ++  +S       L E L+FANA  AL   K GAI +LPT
Sbjct: 264 GLLAGKS-------LEEALRFANAVAALVVQKTGAISSLPT 297

This family includes a variety of carbohydrate and pyrimidine kinases. Length = 298

>gnl|CDD|238579 cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP

 Score =  113 bits (285), Expect = 6e-31
 Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 21/162 (12%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           ++AA+ AG  +  +P        +P  AR     +    +++  ++ E   LTG +  D+
Sbjct: 148 LRAARRAGVTVILNP--------AP--ARPLPAELLALVDILVPNETEAALLTGIEVTDE 197

Query: 61  ESAL----SLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALL 116
           E A      L    +K ++VTLG  G    +      V AF+VK VDTTGAGD F+GAL 
Sbjct: 198 EDAEKAARLLLAKGVKNVIVTLGAKGALLASGGEVEHVPAFKVKAVDTTGAGDTFIGALA 257

Query: 117 CKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPT 158
             +    S       L E ++FANA  ALS T+ GA P++PT
Sbjct: 258 AALARGLS-------LEEAIRFANAAAALSVTRPGAQPSIPT 292

This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution. Length = 292

>gnl|CDD|215299 PLN02543, PLN02543, pfkB-type carbohydrate kinase family protein

 Score =  108 bits (272), Expect = 4e-28
 Identities = 70/194 (36%), Positives = 91/194 (46%), Gaps = 32/194 (16%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKID- 59
           ++ +K+ G L+ +D NL LPLW S +E RE I   W++A++I+VS  ELEFL   D  + 
Sbjct: 290 IELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYYER 349

Query: 60  --------------------------DESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGA 93
                                      E    LWH  LKLLLVT G     YYT  F G 
Sbjct: 350 KRNYPPQYYAESFEQTKNWRDYYHYTPEEIAPLWHDGLKLLLVTDGTLRIHYYTPKFDGV 409

Query: 94  V----DAFRVK-TVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTT 148
           V    D      T D TG+GDA V A++ K+       ED+  L   L+FA A G +S  
Sbjct: 410 VVGTEDVLITPFTCDRTGSGDAVVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQW 469

Query: 149 KKGAIPALPTESEA 162
             GA+   PTES  
Sbjct: 470 TIGAVRGFPTESAT 483

Length = 496

>gnl|CDD|233751 TIGR02152, D_ribokin_bact, ribokinase

 Score = 95.4 bits (238), Expect = 4e-24
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 19/135 (14%)

Query: 38  KAEVIKVSDV------ELEFLTGSDKIDD-----ESALSLWHPNLKLLLVTLGEHGCRYY 86
             E++ + D+      E E LTG  ++ D     ++A  L    +K +++TLG  G    
Sbjct: 165 DDELLSLVDIITPNETEAEILTG-IEVTDEEDAEKAAEKLLEKGVKNVIITLGSKGALLV 223

Query: 87  TKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALS 146
           +K     + AF+VK VDTT AGD F GA          A+ +   L + ++FANA  A+S
Sbjct: 224 SKDESKLIPAFKVKAVDTTAAGDTFNGAF-------AVALAEGKSLEDAIRFANAAAAIS 276

Query: 147 TTKKGAIPALPTESE 161
            T+KGA  ++P   E
Sbjct: 277 VTRKGAQSSIPYLEE 291

This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not [Energy metabolism, Sugars]. Length = 293

>gnl|CDD|215521 PLN02967, PLN02967, kinase

 Score = 95.1 bits (236), Expect = 5e-23
 Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 21/166 (12%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTG---SDK 57
           +K +K+ G ++ YD NL LPLW S EE +  I   W+ A++I+V+  ELEFL G   +++
Sbjct: 359 IKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIEPTEE 418

Query: 58  IDD-------------ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVK---- 100
            D              E    LWH NLK+L VT G     YYTK   GAV          
Sbjct: 419 FDTKDNDKSKFVHYSPEVVAPLWHENLKVLFVTNGTSKIHYYTKEHNGAVHGMEDAPITP 478

Query: 101 -TVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGAL 145
            T D + +GD  V  L+  +      I D+  L + +K+A  CG +
Sbjct: 479 FTSDMSASGDGIVAGLMRMLTVQPHLITDKGYLEKTIKYAIDCGVI 524

Length = 581

>gnl|CDD|185541 PTZ00292, PTZ00292, ribokinase; Provisional

 Score = 82.5 bits (204), Expect = 4e-19
 Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAR-EQIMSIWDKAEVIKVSDVELEFLTGSDKID 59
           +K AKE G    ++P       P+P+ A  E I        +  V++VE   +TG +  D
Sbjct: 166 LKEAKERGCYTVFNPA------PAPKLAEVEIIKPFLKYVSLFCVNEVEAALITGMEVTD 219

Query: 60  DESALSLWHPNLKL----LLVTLGEHGCRY-YTKSFKGAVDAFRVKTVDTTGAGDAFVGA 114
            ESA        +L    +++TLG +GC     ++    V   RVK VDTTGAGD FVG+
Sbjct: 220 TESAFKASKELQQLGVENVIITLGANGCLIVEKENEPVHVPGKRVKAVDTTGAGDCFVGS 279

Query: 115 LLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
           +   +   +        L+E  K AN   A+S T+ G   + P  SE  A +K
Sbjct: 280 MAYFMSRGKD-------LKESCKRANRIAAISVTRHGTQSSYPHPSELPADVK 325

Length = 326

>gnl|CDD|236858 PRK11142, PRK11142, ribokinase; Provisional

 Score = 80.3 bits (199), Expect = 2e-18
 Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 11/123 (8%)

Query: 48  ELEFLTGSDKIDDESA----LSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVD 103
           E E LTG    DD+ A      L    ++ +L+TLG  G           V  FRV+ VD
Sbjct: 188 EAEKLTGIRVEDDDDAAKAAQVLHQKGIETVLITLGSRGVWLSENGEGQRVPGFRVQAVD 247

Query: 104 TTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEAL 163
           T  AGD F GAL+  +++ +        L E ++FA+A  A++ T+KGA P++P   E  
Sbjct: 248 TIAAGDTFNGALVTALLEGKP-------LPEAIRFAHAAAAIAVTRKGAQPSIPWREEID 300

Query: 164 ALL 166
           A L
Sbjct: 301 AFL 303

Length = 306

>gnl|CDD|238920 cd01945, ribokinase_group_B, Ribokinase-like subgroup B

 Score = 73.9 bits (182), Expect = 3e-16
 Identities = 43/108 (39%), Positives = 52/108 (48%), Gaps = 10/108 (9%)

Query: 52  LTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYT-KSFKGAVDAFRVKTVDTTGAGDA 110
            TGS   DDE+   L    +  + VTLGE GC +         V AF V+ VDTTGAGD 
Sbjct: 186 NTGS--ADDEALELLASLGIPFVAVTLGEAGCLWLERDGELFHVPAFPVEVVDTTGAGDV 243

Query: 111 FVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPT 158
           F GA          A+ +   LRE L+FA+A  AL     G    LPT
Sbjct: 244 FHGAFA-------HALAEGMPLREALRFASAAAALKCRGLGGRAGLPT 284

Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. . Length = 284

>gnl|CDD|238917 cd01942, ribokinase_group_A, Ribokinase-like subgroup A

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 23/156 (14%)

Query: 2   KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFL---TGSDKI 58
           +     G  +S+DP   LP   S EE  E +    ++A+++ V+D E E L   TG  + 
Sbjct: 143 RELAAGGITVSFDPGQELPRL-SGEELEEIL----ERADILFVNDYEAELLKERTGLSEA 197

Query: 59  DDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAF-RVKTVDTTGAGDAFVGALLC 117
           +  S        +++++VTLG  G   +    +  V A   VK VDTTGAGDAF    L 
Sbjct: 198 ELAS-------GVRVVVVTLGPKGAIVFEDGEEVEVPAVPAVKVVDTTGAGDAFRAGFL- 249

Query: 118 KIVDDQSAIEDEPRLREILKFANACGALSTTKKGAI 153
                   +     L E L+  N   +L   ++GA 
Sbjct: 250 ------YGLLRGYDLEESLRLGNLAASLKVERRGAQ 279

Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. Length = 279

>gnl|CDD|238177 cd00287, ribokinase_pfkB_like, ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group

 Score = 68.7 bits (168), Expect = 9e-15
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 10/122 (8%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTG---SDK 57
           ++ A+  G  +  DP  R           E++  +    +++  ++ E E LTG    + 
Sbjct: 77  LEEARRRGVPVVLDPGPRAVRLD-----GEELEKLLPGVDILTPNEEEAEALTGRRDLEV 131

Query: 58  IDDESALSLWHPN-LKLLLVTLGEHGCRYYT-KSFKGAVDAFRVKTVDTTGAGDAFVGAL 115
            +   A +L      K+++VTLGE G    T    +  V AF VK VDTTGAGDAF+ AL
Sbjct: 132 KEAAEAAALLLSKGPKVVIVTLGEKGAIVATRGGTEVHVPAFPVKVVDTTGAGDAFLAAL 191

Query: 116 LC 117
             
Sbjct: 192 AA 193

The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase). Length = 196

>gnl|CDD|224030 COG1105, FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 12/136 (8%)

Query: 41  VIKVSDVELEFLTGSDKIDDESALSLWHPNL----KLLLVTLGEHGCRYYTKSFKGAVDA 96
           +IK +  ELE L G +    E  +      L    + ++V+LG  G    T         
Sbjct: 181 LIKPNREELEALFGRELTTLEDVIKAARELLAEGIENVIVSLGADGALLVTAEGVYFASP 240

Query: 97  FRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKG-AIPA 155
            +V+ V T GAGD+ V   L  ++  +S       L E L+FA ACGA + ++KG  IP 
Sbjct: 241 PKVQVVSTVGAGDSMVAGFLAGLLKGKS-------LEEALRFAVACGAAAASQKGTGIPD 293

Query: 156 LPTESEALALLKRSTI 171
           L    +  A +    +
Sbjct: 294 LDQLKKIYAQVTVEKL 309

Length = 310

>gnl|CDD|234133 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 38  KAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKL----LLVTLGEHGCRYYTKSFKGA 93
           K  +IK +  ELE L G +   +E  +      L      +LV+LG  G    TK     
Sbjct: 176 KPFLIKPNHEELEELFGRELKTEEEIIEAARELLDRGAENVLVSLGADGALLVTKEGALK 235

Query: 94  VDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAI 153
               +V+ V+T GAGD+ V   L  +    S       L E L+FA A G+ +    G  
Sbjct: 236 ATPPKVEVVNTVGAGDSMVAGFLAGLARGLS-------LEEALRFAVAAGSAAAFSPGT- 287

Query: 154 PALPTESEALALLKR 168
             LP   +   LL +
Sbjct: 288 -GLPDPEDVEELLDQ 301

This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases. Length = 303

>gnl|CDD|215195 PLN02341, PLN02341, pfkB-type carbohydrate kinase family protein

 Score = 57.1 bits (138), Expect = 5e-10
 Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 13/179 (7%)

Query: 4   AKEAGALLSYDPNLR-LPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTG-SDKIDDE 61
           A + G  + +DP  R   L     + R  +  +   ++V+ ++  E E LTG  + I   
Sbjct: 250 AIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGIRNPIL-- 307

Query: 62  SALSLWHPNL--KLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKI 119
           +   L  P +  K ++V +G  G    T+S      AF+V  VDT G GD+F  A+    
Sbjct: 308 AGQELLRPGIRTKWVVVKMGSKGSILVTRSSVSCAPAFKVNVVDTVGCGDSFAAAIALGY 367

Query: 120 VDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTIIDKIMSW 178
           + +         L   L  ANA GA +    GA   + T  + L LL+ S + +    W
Sbjct: 368 IHNLP-------LVNTLTLANAVGAATAMGCGAGRNVATLEKVLELLRASNLNEDDTFW 419

Length = 470

>gnl|CDD|238573 cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor

 Score = 56.5 bits (137), Expect = 7e-10
 Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 19/159 (11%)

Query: 1   MKAAKEAGALLS---YDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDK 57
            + AKE G  ++     P +        +  +E ++ +    +++  ++ E E L  ++ 
Sbjct: 167 AEHAKENGVKIALNLSAPFI-------VQRFKEALLELLPYVDILFGNEEEAEALAEAET 219

Query: 58  IDD-ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFR-VKTVDTTGAGDAFVGAL 115
            DD E+AL L     +++++T G  G           V A    K VDT GAGDAF G  
Sbjct: 220 TDDLEAALKLLALRCRIVVITQGAKGAVVVEGGEVYPVPAIPVEKIVDTNGAGDAFAGGF 279

Query: 116 LCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIP 154
           L  +V  +        L E ++  +   A    + G   
Sbjct: 280 LYGLVQGEP-------LEECIRLGSYAAAEVIQQLGPRL 311

The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway. . Length = 312

>gnl|CDD|238922 cd01947, Guanosine_kinase_like, Guanosine kinase-like sugar kinases

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 69  PNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIED 128
           P  + L+VT GE G   Y       V A + K  D+TGAGD+F    +  ++   S    
Sbjct: 188 PFPRYLIVTEGELGAILYPGGRYNHVPAKKAKVPDSTGAGDSFAAGFIYGLLKGWS---- 243

Query: 129 EPRLREILKFANACGALSTTKKGAI 153
              + E L+    CGA+  +  G  
Sbjct: 244 ---IEEALELGAQCGAICVSHFGPY 265

Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time. Length = 265

>gnl|CDD|238919 cd01944, YegV_kinase_like, YegV-like sugar kinase

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 14/147 (9%)

Query: 7   AGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSL 66
           AG  L +DP  R+   P        +M+   K  +   +  E            E++   
Sbjct: 155 AGTTLVFDPGPRISDIPDTILQA--LMA---KRPIWSCNREEAAIFAERGDPAAEASALR 209

Query: 67  WHPNLK-LLLVTLGEHGCRYYTKSFK-GAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQS 124
            +      ++V LG +G            +  F+VK VDT GAGD   G +L  +    S
Sbjct: 210 IYAKTAAPVVVRLGSNGAWIRLPDGNTHIIPGFKVKAVDTIGAGDTHAGGMLAGLAKGMS 269

Query: 125 AIEDEPRLREILKFANACGALSTTKKG 151
                  L + +  ANA  A+  T+ G
Sbjct: 270 -------LADAVLLANAAAAIVVTRSG 289

Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time. Length = 289

>gnl|CDD|234367 TIGR03828, pfkB, 1-phosphofructokinase

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 41  VIKVSDVELEFLTGSDKIDDESALSLWHPNLKL----LLVTLGEHGCRYYTKSFKGAVDA 96
           +IK +D ELE L G +    E  +      L L    +L++LG  G    TK        
Sbjct: 179 LIKPNDEELEELFGRELKTLEEIIEAARELLDLGAENVLISLGADGALLVTKEGALFAQP 238

Query: 97  FRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPAL 156
            + + V T GAGD+ V   L  +    S       L E L+ A A G+ +   +G    L
Sbjct: 239 PKGEVVSTVGAGDSMVAGFLAGLESGLS-------LEEALRLAVAAGSAAAFSEGT--GL 289

Query: 157 PTESEALALLKRSTI 171
           P   +   LL + TI
Sbjct: 290 PDPEDIEELLPQVTI 304

This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688). Length = 304

>gnl|CDD|238570 cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 11/118 (9%)

Query: 38  KAEVIKVSDVELEFLTGSDKIDDESALSLWHPNL----KLLLVTLGEHGCRYYTKSFKGA 93
           K  +IK +  ELE L G    D+E  ++     +    + +LV+LG  G    TK     
Sbjct: 177 KPFLIKPNREELEELFGRPLGDEEDVIAAARKLIERGAENVLVSLGADGALLVTKDGVYR 236

Query: 94  VDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKG 151
               +VK V T GAGD+ V   +  +    S       L E L+ A A G+ +    G
Sbjct: 237 ASPPKVKVVSTVGAGDSMVAGFVAGLAQGLS-------LEEALRLAVAAGSATAFSPG 287

FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis. Length = 289

>gnl|CDD|238912 cd01937, ribokinase_group_D, Ribokinase-like subgroup D

 Score = 50.5 bits (121), Expect = 6e-08
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 11/101 (10%)

Query: 41  VIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVK 100
           V+K+S VE E    S   +    +       K ++VT GE G   +  + K  + A +  
Sbjct: 158 VLKLSRVEAE--VISTPTELARLIKETGV--KEIIVTDGEEGGYIFDGNGKYTIPASKKD 213

Query: 101 TVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANA 141
            VD TGAGD F+ A L   +           ++E  +FA A
Sbjct: 214 VVDPTGAGDVFLAAFLYSRL-------SGKDIKEAAEFAAA 247

Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. Length = 254

>gnl|CDD|238916 cd01941, YeiC_kinase_like, YeiC-like sugar kinase

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 21/110 (19%)

Query: 48  ELEFLTG---SDKIDDESALSLWH-PNLKLLLVTLGEHGCRY-------YTKSFKGAVDA 96
           ELE L G    +  D+  A  +   P +K ++VTLG  G           TK F      
Sbjct: 186 ELEALAGALIENNEDENKAAKILLLPGIKNVIVTLGAKGVLLSSREGGVETKLFPAPQPE 245

Query: 97  FRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALS 146
                V+ TGAGDAFV  L+  +++          L + L+FA A  AL+
Sbjct: 246 ---TVVNVTGAGDAFVAGLVAGLLEG-------MSLDDSLRFAQAAAALT 285

Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time. Length = 288

>gnl|CDD|238577 cd01172, RfaE_like, RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 37/132 (28%), Positives = 50/132 (37%), Gaps = 23/132 (17%)

Query: 39  AEVIKVSDVELEFLTGSDKIDDESALSLW-----HPNLKLLLVTLGEHGCRYYTKSFKGA 93
           A ++  ++ E     G +  DD+   +         NL+ LLVTLGE G   + +   G 
Sbjct: 182 ATLLTPNEKEAREALGDEINDDDELEAAGEKLLELLNLEALLVTLGEEGMTLFERD--GE 239

Query: 94  VD---AFRVKTVDTTGAGDAFVGAL---LCKIVDDQSAIEDEPRLREILKFANACGALST 147
           V    A   +  D TGAGD  +  L   L    D          L E    ANA   +  
Sbjct: 240 VQHIPALAKEVYDVTGAGDTVIATLALALAAGAD----------LEEAAFLANAAAGVVV 289

Query: 148 TKKGAIPALPTE 159
            K G  P  P E
Sbjct: 290 GKVGTAPVTPKE 301

LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily. Length = 304

>gnl|CDD|238915 cd01940, Fructoselysine_kinase_like, Fructoselysine kinase-like

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 21/131 (16%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSD-VELEFLTGSDKID 59
           ++A   AGAL+S+D + R                 WD   +  V   V+  F + SD  D
Sbjct: 131 LQALVGAGALISFDFSDR-----------------WDDDYLQLVCPYVDFAFFSASDLSD 173

Query: 60  DE---SALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALL 116
           +E             KL++VT GE G   Y  +   +V    V+ VDT GAGD+F+   L
Sbjct: 174 EEVKAKLKEAVSRGAKLVIVTRGEDGAIAYDGAVFYSVAPRPVEVVDTLGAGDSFIAGFL 233

Query: 117 CKIVDDQSAIE 127
             ++   +AI 
Sbjct: 234 LSLLAGGTAIA 244

Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown. Length = 264

>gnl|CDD|178237 PLN02630, PLN02630, pfkB-type carbohydrate kinase family protein

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 74  LLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGAL 115
           ++VT G+ GCR Y K  +  V  F    VD TGAGD+F+G  
Sbjct: 206 VIVTNGKKGCRIYWKDGEMRVPPFPAIQVDPTGAGDSFLGGF 247

Length = 335

>gnl|CDD|238921 cd01946, ribokinase_group_C, Ribokinase-like subgroup C

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 26  EEAREQIMSIWDKAEVIKVSDVELEFLTG-SDKIDDESALSLWHPNLKLLLVTLGEHGCR 84
               E++  +  K +V+ ++D E   LTG ++ +     +    P  K L++  GE+G  
Sbjct: 151 SIKPEKLKKVLAKVDVVIINDGEARQLTGAANLVKAARLILAMGP--KALIIKRGEYGAL 208

Query: 85  YYTKSFKGAVDAFRVKTV-DTTGAGDAFVGALL 116
            +T     A  A+ +++V D TGAGD F G  +
Sbjct: 209 LFTDDGYFAAPAYPLESVFDPTGAGDTFAGGFI 241

Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. Length = 277

>gnl|CDD|182090 PRK09813, PRK09813, fructoselysine 6-kinase; Provisional

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 22/119 (18%)

Query: 5   KEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKID--DES 62
             AG L ++D + +   W SP         +W       V  ++  F +   + +     
Sbjct: 133 HAAGKLTAFDFSDK---WDSP---------LWQTL----VPHLDYAFASAPQEDEFLRLK 176

Query: 63  ALSLWHPNLKLLLVTLGEHGCRYY--TKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKI 119
             ++      +++VTLGE+G   +   + ++ A +   V  VDT GAGD+F+   LC  
Sbjct: 177 MKAIVARGAGVVIVTLGENGSIAWDGAQFWRQAPEPVTV--VDTMGAGDSFIAGFLCGW 233

Length = 260

>gnl|CDD|225149 COG2240, PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 38/159 (23%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 21  LWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSD--KIDD--ESALSLWHPNLKLLLV 76
           L+ +PE A      +   A++I  +  ELE LTG     +DD  ++A  L     K++LV
Sbjct: 119 LYVAPEVAEAYRDELLPLADIITPNIFELEILTGKPLNTLDDAVKAARKLGADGPKIVLV 178

Query: 77  T----LGEHGCRYYTKSFKGAVDAFRVKTVDT--TGAGDAFVGALLCKIVDDQSAIEDEP 130
           T     G     +        +       V     G GD F   LL ++++  S      
Sbjct: 179 TSLSRAGMSTGNFEMLGKSAELAWHISPLVPFIPNGTGDLFSALLLARLLEGLS------ 232

Query: 131 RLREILKFANA--CGALSTTKKGAIPALPTESEALALLK 167
            L + L+ A A     L  T+K     L   +    L +
Sbjct: 233 -LTQALERATAAVYEVLQETQKLGSDELQLVAAQERLAQ 270

Length = 281

>gnl|CDD|178005 PLN02379, PLN02379, pfkB-type carbohydrate kinase family protein

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 46  DVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV---KTV 102
           D   E L G  + D E+AL          +VTLG  GC    +  K  V    +     V
Sbjct: 241 DEARELLRGEQESDPEAALEFLAKYCNWAVVTLGSKGC--IARHGKEVVRVPAIGETNAV 298

Query: 103 DTTGAGDAFVGALL 116
           D TGAGD F    L
Sbjct: 299 DATGAGDLFASGFL 312

Length = 367

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
PLN02323	330	probable fructokinase	99.97
PLN02341	470	pfkB-type carbohydrate kinase family protein	99.97
PLN02543	496	pfkB-type carbohydrate kinase family protein	99.97
PLN02967	581	kinase	99.96
PRK09434	304	aminoimidazole riboside kinase; Provisional	99.96
PTZ00292	326	ribokinase; Provisional	99.96
PRK11142	306	ribokinase; Provisional	99.95
COG0524	311	RbsK Sugar kinases, ribokinase family [Carbohydrat	99.95
cd01167	295	bac_FRK Fructokinases (FRKs) mainly from bacteria	99.95
PRK13508	309	tagatose-6-phosphate kinase; Provisional	99.94
PLN02813	426	pfkB-type carbohydrate kinase family protein	99.94
TIGR03828	304	pfkB 1-phosphofructokinase. This enzyme acts in co	99.94
PRK09513	312	fruK 1-phosphofructokinase; Provisional	99.94
TIGR01231	309	lacC tagatose-6-phosphate kinase. This enzyme is p	99.94
cd01174	292	ribokinase Ribokinase catalyses the phosphorylatio	99.94
TIGR03168	303	1-PFK hexose kinase, 1-phosphofructokinase family.	99.94
cd01168	312	adenosine_kinase Adenosine kinase (AK) catalyzes t	99.94
PLN02379	367	pfkB-type carbohydrate kinase family protein	99.93
PRK10294	309	6-phosphofructokinase 2; Provisional	99.93
cd01166	294	KdgK 2-keto-3-deoxygluconate kinase (KdgK) phospho	99.93
PRK09850	313	pseudouridine kinase; Provisional	99.93
cd01944	289	YegV_kinase_like YegV-like sugar kinase. Found onl	99.93
TIGR02152	293	D_ribokin_bact ribokinase. This model describes ri	99.93
COG1105	310	FruK Fructose-1-phosphate kinase and related fruct	99.93
cd01945	284	ribokinase_group_B Ribokinase-like subgroup B. Fou	99.93
cd01943	328	MAK32 MAK32 kinase. MAK32 is a protein found prima	99.92
PRK15074	434	inosine/guanosine kinase; Provisional	99.92
TIGR02198	315	rfaE_dom_I rfaE bifunctional protein, domain I. Rf	99.92
PTZ00247	345	adenosine kinase; Provisional	99.92
cd01942	279	ribokinase_group_A Ribokinase-like subgroup A. Fou	99.92
cd01172	304	RfaE_like RfaE encodes a bifunctional ADP-heptose	99.92
PRK09954	362	putative kinase; Provisional	99.92
KOG2855	330	consensus Ribokinase [Carbohydrate transport and m	99.91
PF00294	301	PfkB: pfkB family carbohydrate kinase; InterPro: I	99.91
cd01164	289	FruK_PfkB_like 1-phosphofructokinase (FruK), minor	99.9
cd01940	264	Fructoselysine_kinase_like Fructoselysine kinase-l	99.9
PLN02548	332	adenosine kinase	99.9
cd01947	265	Guanosine_kinase_like Guanosine kinase-like sugar	99.9
PLN02630	335	pfkB-type carbohydrate kinase family protein	99.9
PRK11316	473	bifunctional heptose 7-phosphate kinase/heptose 1-	99.89
PRK09813	260	fructoselysine 6-kinase; Provisional	99.89
cd01946	277	ribokinase_group_C Ribokinase-like subgroup C. Fou	99.89
cd01941	288	YeiC_kinase_like YeiC-like sugar kinase. Found in	99.89
cd01173	254	pyridoxal_pyridoxamine_kinase Pyridoxal kinase pla	99.87
cd01937	254	ribokinase_group_D Ribokinase-like subgroup D. Fou	99.87
PRK12413	253	phosphomethylpyrimidine kinase; Provisional	99.87
cd01939	290	Ketohexokinase Ketohexokinase (fructokinase, KHK)	99.87
TIGR00097	254	HMP-P_kinase phosphomethylpyrimidine kinase. This	99.86
PRK05756	286	pyridoxamine kinase; Validated	99.85
cd01169	242	HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrim	99.85
PRK12412	268	pyridoxal kinase; Reviewed	99.85
PRK06427	266	bifunctional hydroxy-methylpyrimidine kinase/ hydr	99.84
PRK08573	448	phosphomethylpyrimidine kinase; Provisional	99.84
PRK07105	284	pyridoxamine kinase; Validated	99.84
cd00287	196	ribokinase_pfkB_like ribokinase/pfkB superfamily:	99.83
TIGR00687	286	pyridox_kin pyridoxal kinase. ThiD and related pro	99.83
PRK08176	281	pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpy	99.81
PRK12616	270	pyridoxal kinase; Reviewed	99.81
KOG2854	343	consensus Possible pfkB family carbohydrate kinase	99.76
COG2870	467	RfaE ADP-heptose synthase, bifunctional sugar kina	99.74
PTZ00344	296	pyridoxal kinase; Provisional	99.72
PTZ00347	504	phosphomethylpyrimidine kinase; Provisional	99.7
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	99.7
PF08543	246	Phos_pyr_kin: Phosphomethylpyrimidine kinase; Inte	99.7
COG0351	263	ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidi	99.69
PLN02978	308	pyridoxal kinase	99.66
PRK14713	530	multifunctional hydroxymethylpyrimidine phosphokin	99.65
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	99.64
cd01171	254	YXKO-related B.subtilis YXKO protein of unknown fu	99.52
cd01170	242	THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (T	99.48
PTZ00493	321	phosphomethylpyrimidine kinase; Provisional	99.45
TIGR00196	272	yjeF_cterm yjeF C-terminal region, hydroxyethylthi	99.45
COG2240	281	PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coe	99.45
KOG2947	308	consensus Carbohydrate kinase [Carbohydrate transp	99.44
PRK09355	263	hydroxyethylthiazole kinase; Validated	99.24
TIGR00694	249	thiM hydroxyethylthiazole kinase. This model repre	99.19
KOG2598	523	consensus Phosphomethylpyrimidine kinase [Coenzyme	99.05
KOG2599	308	consensus Pyridoxal/pyridoxine/pyridoxamine kinase	98.98
PF02110	246	HK: Hydroxyethylthiazole kinase family; InterPro:	98.44
KOG3009	614	consensus Predicted carbohydrate kinase, contains	98.33
COG2145	265	ThiM Hydroxyethylthiazole kinase, sugar kinase fam	98.15
PRK10565	508	putative carbohydrate kinase; Provisional	97.98
PF01256	242	Carb_kinase: Carbohydrate kinase; InterPro: IPR000	97.71
COG0063	284	Predicted sugar kinase [Carbohydrate transport and	96.14
KOG3974	306	consensus Predicted sugar kinase [Carbohydrate tra	95.65
PRK14038	453	ADP-dependent glucokinase; Provisional	88.72
PRK14039	453	ADP-dependent glucokinase; Provisional	86.76

>PLN02323 probable fructokinase

Probab=99.97  E-value=4.3e-30  Score=211.10  Aligned_cols=167  Identities=72%  Similarity=1.178  Sum_probs=145.3

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.+++.|++|++||+++...|.+....++.+.++++++|++++|++|+..+++....+.+.+.+++..|++.||||+|++
T Consensus       161 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~g~~~vvvt~G~~  240 (330)
T PLN02323        161 KIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGDDPDDDTVVKLWHPNLKLLLVTEGEE  240 (330)
T ss_pred             HHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCccHHHHHHHHhcCCCEEEEecCCC
Confidence            56788999999999999888977777788889999999999999999999998765544444455567999999999999


Q ss_pred             ceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHHH
Q 029908           82 GCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESE  161 (185)
Q Consensus        82 G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~~  161 (185)
                      |++++++++.+++|+++++++|++||||+|+|||++++++|++...+..++++|+++|+++|+.++++.|+..++|++++
T Consensus       241 G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~Agfl~~l~~g~~~~~~~~~l~~al~~a~a~Aa~~v~~~g~~~~~~~~~~  320 (330)
T PLN02323        241 GCRYYTKDFKGRVEGFKVKAVDTTGAGDAFVGGLLSQLAKDLSLLEDEERLREALRFANACGAITTTERGAIPALPTKEA  320 (330)
T ss_pred             ceEEEeCCCceEeCCccCCCCCCCCcHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHHhccCCccCCCCHHH
Confidence            99999988778899999999999999999999999999999752223344899999999999999999999888999999


Q ss_pred             HHHHHhc
Q 029908          162 ALALLKR  168 (185)
Q Consensus       162 i~~~~~~  168 (185)
                      +++++++
T Consensus       321 v~~~l~~  327 (330)
T PLN02323        321 VLKLLKK  327 (330)
T ss_pred             HHHHHHH
Confidence            9988764

>PLN02341 pfkB-type carbohydrate kinase family protein

Probab=99.97  E-value=3e-29  Score=214.96  Aligned_cols=170  Identities=28%  Similarity=0.394  Sum_probs=148.4

Q ss_pred             hHHHHcCCeEEEcCCCCC-CCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCC--CcEEEEEc
Q 029908            2 KAAKEAGALLSYDPNLRL-PLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPN--LKLLLVTL   78 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~-~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g--~~~vvit~   78 (185)
                      +.++++|++|++||+++. .+|.+.+...+.+.++++++|++++|++|+..+++.... .+.+..+...|  .+.||||+
T Consensus       248 ~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~~~~-~~a~~~l~~~g~~~k~VVVTl  326 (470)
T PLN02341        248 DYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGIRNP-ILAGQELLRPGIRTKWVVVKM  326 (470)
T ss_pred             HHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCCH-HHHHHHHHhcCCCCCEEEEee
Confidence            568889999999999875 355545555667889999999999999999999986432 22333555555  58999999


Q ss_pred             CCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCC
Q 029908           79 GEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPT  158 (185)
Q Consensus        79 G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~  158 (185)
                      |++|++++++++.+++|+++++++||+||||+|+|||++++++|++       +++|+++|+++|++++++.|+..++|+
T Consensus       327 G~~Ga~~~~~~~~~~vpa~~v~vVDTtGAGDaF~Agfl~gll~G~~-------l~eal~~A~a~aA~~v~~~Ga~~~~p~  399 (470)
T PLN02341        327 GSKGSILVTRSSVSCAPAFKVNVVDTVGCGDSFAAAIALGYIHNLP-------LVNTLTLANAVGAATAMGCGAGRNVAT  399 (470)
T ss_pred             CCCCeEEEECCeeEEeCCCCcCCCCCcCccHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcCcCCCCCCCC
Confidence            9999999999989999999999999999999999999999999999       999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcchhhhhhhh
Q 029908          159 ESEALALLKRSTIIDKIMSWI  179 (185)
Q Consensus       159 ~~~i~~~~~~~~~~~~~~~~~  179 (185)
                      ++++++++++....++..+|-
T Consensus       400 ~~ev~~~l~~~~~~~~~~~~~  420 (470)
T PLN02341        400 LEKVLELLRASNLNEDDTFWA  420 (470)
T ss_pred             HHHHHHHHHhcCCCcchhHHH
Confidence            999999999999888877774

>PLN02543 pfkB-type carbohydrate kinase family protein

Probab=99.97  E-value=2.3e-29  Score=215.37  Aligned_cols=163  Identities=42%  Similarity=0.640  Sum_probs=137.0

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCC------------------------
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDK------------------------   57 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~------------------------   57 (185)
                      +.|+++|++|+|||+.|+.+|.+.+...+.+.++++++|++++|++|+..|++...                        
T Consensus       291 ~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (496)
T PLN02543        291 ELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYYERKRNYPPQYYAESFEQTKNWRD  370 (496)
T ss_pred             HHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCcccccccccchhhhhhhhhhhcccc
Confidence            57889999999999999999988778888899999999999999999999998641                        


Q ss_pred             ---CCHHHHHHhcCCCCcEEEEEcCCCceEEEEcCceeEecCc-----ccccccCCCcchHHHHHHHHHHHc-------c
Q 029908           58 ---IDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAF-----RVKTVDTTGAGDAFVGALLCKIVD-------D  122 (185)
Q Consensus        58 ---~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~~~~~~-----~~~~~d~~GaGDaf~A~~~~~l~~-------g  122 (185)
                         .+.+.+..++..|++.||||.|.+|+.+++++....++..     +..++|||||||+|+|||+++|++       +
T Consensus       371 ~~~~~~~~~~~l~~~g~~~VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~~~~VDTTGAGDAF~AGfL~~Ll~~~~~~~~g  450 (496)
T PLN02543        371 YYHYTPEEIAPLWHDGLKLLLVTDGTLRIHYYTPKFDGVVVGTEDVLITPFTCDRTGSGDAVVAAIMRKLTTCPEMFEDQ  450 (496)
T ss_pred             cccCCHHHHHHHHHCCCCEEEEEcCCCcEEEEECCCcccccccccccCCCCCcCCCchHHHHHHHHHHHHHhcccccccc
Confidence               1223344566679999999999999999986422222111     112489999999999999999996       4


Q ss_pred             CCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHHHHHHHHhcCcc
Q 029908          123 QSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTI  171 (185)
Q Consensus       123 ~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~~i~~~~~~~~~  171 (185)
                      .+       +++++++|+++|+++|++.|+.+++|++++++++++++.+
T Consensus       451 ~~-------l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev~~~~~~~~~  492 (496)
T PLN02543        451 DV-------LERQLRFAVAAGIISQWTIGAVRGFPTESATQNLKEQVYV  492 (496)
T ss_pred             cc-------HHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhhcc
Confidence            55       9999999999999999999999999999999999999875

>PLN02967 kinase

Probab=99.96  E-value=4.6e-28  Score=209.61  Aligned_cols=165  Identities=33%  Similarity=0.575  Sum_probs=133.3

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCC----------------HHHHHH
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKID----------------DESALS   65 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~----------------~~~~~~   65 (185)
                      +.|+++|++|+|||++|+++|.+.+.+.+.+.++++++|||++|++|+..|++.....                .+.+..
T Consensus       360 k~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e~~~~~~~~~~~~~~~~e~a~~  439 (581)
T PLN02967        360 KISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIEPTEEFDTKDNDKSKFVHYSPEVVAP  439 (581)
T ss_pred             HHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHhCCCccccccccccchhccccchHHHHHH
Confidence            5788999999999999999998767778888999999999999999999999854211                122335


Q ss_pred             hcCCCCcEEEEEcCCCceEEEEcCc---eeEecCcccc--cccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 029908           66 LWHPNLKLLLVTLGEHGCRYYTKSF---KGAVDAFRVK--TVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFAN  140 (185)
Q Consensus        66 l~~~g~~~vvit~G~~G~~~~~~~~---~~~~~~~~~~--~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~  140 (185)
                      ++..|++.||||.|.+|+++++++.   ...+|+++++  ++|||||||+|+|||+++|+++.....+..++++++++|+
T Consensus       440 l~~~g~k~VVVTlG~~Ga~~~~~~~~~~v~~~~a~~V~V~vVDTTGAGDAF~AGfL~~Ll~g~~~~~g~~~LeeaLrfAn  519 (581)
T PLN02967        440 LWHENLKVLFVTNGTSKIHYYTKEHNGAVHGMEDAPITPFTSDMSASGDGIVAGLMRMLTVQPHLITDKGYLEKTIKYAI  519 (581)
T ss_pred             HHhCCCCEEEEEECccceEEEECCCceeEeeccCCCCCCCCCCCCchhHHHHHHHHHHHHhccCcccccccHHHHHHHHH
Confidence            5567999999999999999998754   3345555665  5899999999999999999984110000012999999999


Q ss_pred             HHhHHHhhccCCCCCCCCHHHHHHHH
Q 029908          141 ACGALSTTKKGAIPALPTESEALALL  166 (185)
Q Consensus       141 ~~aa~~~~~~g~~~~~~~~~~i~~~~  166 (185)
                      ++||++++..|++.++|+++++++-.
T Consensus       520 AaAAL~vt~~GA~~glPt~~eV~~~~  545 (581)
T PLN02967        520 DCGVIDQWLLARTRGFPPKEDMEDEV  545 (581)
T ss_pred             HHHHHHhccCCCccCCCCHHHHhhhc
Confidence            99999999999999999999996543

>PRK09434 aminoimidazole riboside kinase; Provisional

Probab=99.96  E-value=5.4e-28  Score=196.35  Aligned_cols=159  Identities=43%  Similarity=0.619  Sum_probs=135.7

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcC-CCCcEEEEEcCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWH-PNLKLLLVTLGE   80 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~-~g~~~vvit~G~   80 (185)
                      +.++++|+++++||+.++..|.+.+...+.+.++++++|++++|++|+..+++.... .+.+.++.+ .|++.||||+|+
T Consensus       144 ~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~~~~-~~~~~~l~~~~g~~~vvvt~G~  222 (304)
T PRK09434        144 RRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGTSQL-EDAIYALADRYPIALLLVTLGA  222 (304)
T ss_pred             HHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCCCCH-HHHHHHHHhhcCCcEEEEEecC
Confidence            567889999999999988888766778888899999999999999999999886532 122335554 688999999999


Q ss_pred             CceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHH
Q 029908           81 HGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTES  160 (185)
Q Consensus        81 ~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~  160 (185)
                      +|+.++++++.+++|+++++++|++||||+|+|||+++|++|++. .++.++++++++|+++|+.++++.|+..++|+++
T Consensus       223 ~G~~~~~~~~~~~~~~~~~~~vDttGAGD~f~ag~~~~l~~g~~~-~~~~~~~~a~~~a~~~Aa~~v~~~g~~~~~~~~~  301 (304)
T PRK09434        223 EGVLVHTRGQVQHFPAPSVDPVDTTGAGDAFVAGLLAGLSQAGLW-TDEAELAEIIAQAQACGALATTAKGAMTALPNRQ  301 (304)
T ss_pred             CceEEEeCCceeEeCCCCCCCCcCCCchHHHHHHHHHHHHcCCCc-cchHHHHHHHHHHHHHHHHHHcccCCcCCCCChH
Confidence            999999988889999999999999999999999999999999720 1112399999999999999999999998888887


Q ss_pred             HH
Q 029908          161 EA  162 (185)
Q Consensus       161 ~i  162 (185)
                      ++
T Consensus       302 ~~  303 (304)
T PRK09434        302 EL  303 (304)
T ss_pred             Hc
Confidence            65

>PTZ00292 ribokinase; Provisional

Probab=99.96  E-value=9.8e-28  Score=196.77  Aligned_cols=154  Identities=34%  Similarity=0.443  Sum_probs=132.2

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHH----HHHhcCCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDES----ALSLWHPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~----~~~l~~~g~~~vvit   77 (185)
                      +.++++|+++++||+++...|.     .+.+.++++++|++++|++|++.+++....+.+.    .+.+.+.|++.||+|
T Consensus       167 ~~a~~~g~~v~~D~~~~~~~~~-----~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT  241 (326)
T PTZ00292        167 KEAKERGCYTVFNPAPAPKLAE-----VEIIKPFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKELQQLGVENVIIT  241 (326)
T ss_pred             HHHHHcCCEEEEECCCCccccc-----cccHHHHHhcCCEEcCCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCeEEEE
Confidence            4577899999999987654432     2567888899999999999999998865433222    225556799999999


Q ss_pred             cCCCceEEEEcCc-eeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCC
Q 029908           78 LGEHGCRYYTKSF-KGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPAL  156 (185)
Q Consensus        78 ~G~~G~~~~~~~~-~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~  156 (185)
                      +|++|+++++++. .+++|+++++++|++||||+|+|||++++++|++       +++|+++|+++|+.++++.|+..++
T Consensus       242 ~G~~Ga~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~-------~~~al~~a~a~Aa~~v~~~G~~~~~  314 (326)
T PTZ00292        242 LGANGCLIVEKENEPVHVPGKRVKAVDTTGAGDCFVGSMAYFMSRGKD-------LKESCKRANRIAAISVTRHGTQSSY  314 (326)
T ss_pred             eCCCcEEEEeCCCceEEccCCccccCCCcchHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcCCCCccccC
Confidence            9999999988765 4889999999999999999999999999999999       9999999999999999999999889


Q ss_pred             CCHHHHHHHHh
Q 029908          157 PTESEALALLK  167 (185)
Q Consensus       157 ~~~~~i~~~~~  167 (185)
                      |+.+++++.++
T Consensus       315 ~~~~~~~~~~~  325 (326)
T PTZ00292        315 PHPSELPADVK  325 (326)
T ss_pred             CCHHHHHHHhc
Confidence            99999988764

>PRK11142 ribokinase; Provisional

Probab=99.95  E-value=4.2e-27  Score=191.08  Aligned_cols=149  Identities=33%  Similarity=0.486  Sum_probs=129.0

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHH----HHHhcCCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDES----ALSLWHPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~----~~~l~~~g~~~vvit   77 (185)
                      +.|+++|+++++||+....          ...++++++|++++|++|+..+++....+.+.    ++.+.+.|++.||+|
T Consensus       152 ~~a~~~g~~v~~d~~~~~~----------~~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt  221 (306)
T PRK11142        152 KIAKQHGTKVILNPAPARE----------LPDELLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQKGIETVLIT  221 (306)
T ss_pred             HHHHHcCCEEEEECCCCcc----------cCHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHHHHhCCCeEEEE
Confidence            5688899999999975322          12467889999999999999999865443222    235556799999999


Q ss_pred             cCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCC
Q 029908           78 LGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALP  157 (185)
Q Consensus        78 ~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~  157 (185)
                      +|.+|++++++++.+++|+++++++|++||||+|+|||++++++|++       +++|+++|+++|+.++++.|+.+++|
T Consensus       222 ~G~~G~~~~~~~~~~~~~~~~v~vvDt~GAGDaF~Agfi~~l~~g~~-------~~~al~~a~~~Aa~~~~~~G~~~~~~  294 (306)
T PRK11142        222 LGSRGVWLSENGEGQRVPGFRVQAVDTIAAGDTFNGALVTALLEGKP-------LPEAIRFAHAAAAIAVTRKGAQPSIP  294 (306)
T ss_pred             ECCCcEEEEeCCcceeccCCCcccccCCCchhHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcCCCcccccCC
Confidence            99999999988888899999999999999999999999999999999       99999999999999999999988889


Q ss_pred             CHHHHHHHHh
Q 029908          158 TESEALALLK  167 (185)
Q Consensus       158 ~~~~i~~~~~  167 (185)
                      ++++++++++
T Consensus       295 ~~~~~~~~~~  304 (306)
T PRK11142        295 WREEIDAFLQ  304 (306)
T ss_pred             CHHHHHHHHh
Confidence            9999988775

>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.6e-26  Score=188.25  Aligned_cols=155  Identities=41%  Similarity=0.594  Sum_probs=135.2

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH-HHhcCCCCcEEEEEcCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA-LSLWHPNLKLLLVTLGE   80 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~-~~l~~~g~~~vvit~G~   80 (185)
                      +.++++|.+|++|+++++..|.     .+.+.++++++|++++|++|++.+++. ..+.... ..+...+++.+++|+|+
T Consensus       152 ~~a~~~g~~v~~d~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~-~~~~~~~~~~~~~~~~~~vvvt~G~  225 (311)
T COG0524         152 ELAKAAGVTVSFDLNPRPALWD-----RELLEELLALADILFPNEEEAELLTGL-EEDAEAAAALLLAKGVKTVVVTLGA  225 (311)
T ss_pred             HHHHHcCCeEEEecCCCccccc-----hhhHHHHHhhCCEEeCCHHHHHHHhCC-CccHHHHHHHHhhcCCCEEEEEeCC
Confidence            5788999999999999988875     678888999999999999999999987 2222222 35667899999999999


Q ss_pred             CceEEEEcCcee---EecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCC
Q 029908           81 HGCRYYTKSFKG---AVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALP  157 (185)
Q Consensus        81 ~G~~~~~~~~~~---~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~  157 (185)
                      +|+++++.+...   ..++++++++|||||||+|.|||++++++|.+       +.+++++|++++++++++.|....+|
T Consensus       226 ~Ga~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~~g~~-------~~~a~~~a~a~aa~~~~~~g~~~~~p  298 (311)
T COG0524         226 EGAVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKS-------LEEALRFANAAAALAVTRPGARPSLP  298 (311)
T ss_pred             CcEEEEeCCCceeeccCCCCccccccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHhhhhhccCCCCCCCC
Confidence            999999986433   33467778999999999999999999999999       99999999999999999999999999


Q ss_pred             CHHHHHHHHhcC
Q 029908          158 TESEALALLKRS  169 (185)
Q Consensus       158 ~~~~i~~~~~~~  169 (185)
                      +.+++..++++.
T Consensus       299 ~~~~~~~~~~~~  310 (311)
T COG0524         299 TREEVEAFLEEL  310 (311)
T ss_pred             CHHHHHHHHhcc
Confidence            999999998754

>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate

Probab=99.95  E-value=7.8e-27  Score=188.40  Aligned_cols=151  Identities=51%  Similarity=0.726  Sum_probs=128.3

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.+++.|+++++||+.++.+|.......+.+.++++++|++++|++|+..+++....+ +..+.+.+.|++.+|||+|++
T Consensus       145 ~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~~-~~~~~l~~~g~~~vvvt~G~~  223 (295)
T cd01167         145 EAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGEEDPE-EIAALLLLFGLKLVLVTRGAD  223 (295)
T ss_pred             HHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCCHH-HHHHHHhhcCCCEEEEecCCc
Confidence            5678899999999998877787655667788899999999999999999998865432 233456678999999999999


Q ss_pred             ceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCC
Q 029908           82 GCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAI  153 (185)
Q Consensus        82 G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~  153 (185)
                      |++++++++.+++|+++++++|++||||+|+|+|+++|++|....++++++++|+++|+++|+.+|+++|++
T Consensus       224 G~~~~~~~~~~~~~a~~~~vvDttGAGD~f~a~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~G~~  295 (295)
T cd01167         224 GALLYTKGGVGEVPGIPVEVVDTTGAGDAFVAGLLAQLLSRGLLALDEDELAEALRFANAVGALTCTKAGAI  295 (295)
T ss_pred             ceEEEECCcceeeCCCCcceeeCCCccHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHhhHHHhcccCCC
Confidence            999999998999999999999999999999999999999998111122229999999999999999999863

This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.

>PRK13508 tagatose-6-phosphate kinase; Provisional

Probab=99.94  E-value=4.9e-26  Score=185.51  Aligned_cols=154  Identities=21%  Similarity=0.234  Sum_probs=129.1

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCC-CHHHHH----HhcCCCCcEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI-DDESAL----SLWHPNLKLLLV   76 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~-~~~~~~----~l~~~g~~~vvi   76 (185)
                      +.++++|+++++||+.        ... +.+...++++|++++|++|+..+++.... +.+++.    +++..|++.|++
T Consensus       150 ~~a~~~g~~v~~D~~~--------~~~-~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~vvv  220 (309)
T PRK13508        150 ELANQAGKPVVLDCSG--------AAL-QAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDELKEVLQQPLFEGIEWIIV  220 (309)
T ss_pred             HHHHHCCCEEEEECCc--------HHH-HHHHhccCCceEEccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            4678899999999973        111 22333467899999999999999986532 222222    444579999999


Q ss_pred             EcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCC
Q 029908           77 TLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPAL  156 (185)
Q Consensus        77 t~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~  156 (185)
                      |+|++|++++++++.+++|+++++++|++||||+|+|||+++|++|++       +++|+++|+++|++++++.+..  .
T Consensus       221 T~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Agfi~~l~~g~~-------~~~al~~a~a~aa~~~~~~~~~--~  291 (309)
T PRK13508        221 SLGADGAFAKHNDTFYKVDIPKIEVVNPVGSGDSTVAGIASGLLHQED-------DADLLKKANVLGMLNAQEKQTG--H  291 (309)
T ss_pred             ecCCCceEEEeCCceEEEeCCCccccCCcChhHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCcCcC--C
Confidence            999999999988888899999999999999999999999999999999       9999999999999999999975  4


Q ss_pred             CCHHHHHHHHhcCcchh
Q 029908          157 PTESEALALLKRSTIID  173 (185)
Q Consensus       157 ~~~~~i~~~~~~~~~~~  173 (185)
                      .++.+++++++++++++
T Consensus       292 ~~~~~~~~~~~~i~~~~  308 (309)
T PRK13508        292 VNMANYDELYNQIEVKE  308 (309)
T ss_pred             CCHHHHHHHHhceEEEe
Confidence            78999999999988763

>PLN02813 pfkB-type carbohydrate kinase family protein

Probab=99.94  E-value=4.9e-26  Score=192.90  Aligned_cols=159  Identities=21%  Similarity=0.175  Sum_probs=131.0

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCC-CCHHHHHHhcCCCCcEEEEEcCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDK-IDDESALSLWHPNLKLLLVTLGE   80 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~-~~~~~~~~l~~~g~~~vvit~G~   80 (185)
                      +.++++|++|++|++.....   ..........+++++|++++|++|+..|++... .+.+.+.+.+..+++.||||+|.
T Consensus       249 ~~ak~~g~~v~~d~s~~~~~---~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g~~~~~~~~~a~~~L~~~~~~VVVT~G~  325 (426)
T PLN02813        249 EEAHRAGALVAVTASDVSCI---ERHRDDFWDVMGNYADILFANSDEARALCGLGSEESPESATRYLSHFCPLVSVTDGA  325 (426)
T ss_pred             HHHHHcCCEEEEECCCcchh---hhhHHHHHHHHHhcCCEEEeCHHHHHHHhCCCCCCCHHHHHHHHHcCCCEEEEEeCC
Confidence            56788999999998742110   111123334556899999999999999988642 22333444445789999999999


Q ss_pred             CceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccC-CCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCH
Q 029908           81 HGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQ-SAIEDEPRLREILKFANACGALSTTKKGAIPALPTE  159 (185)
Q Consensus        81 ~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~-~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~  159 (185)
                      +|++++++++.+++|+++++++||+||||+|+|||++++++|. +       +++++++|+++|+.++++.|++..+|+.
T Consensus       326 ~Ga~~~~~~~~~~~pa~~v~vVDTtGAGDAF~Agfl~~l~~G~~~-------l~~al~~A~a~Aa~~v~~~Ga~~~~~~~  398 (426)
T PLN02813        326 RGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYAAGILYGLLRGVSD-------LRGMGELAARVAATVVGQQGTRLRVEDA  398 (426)
T ss_pred             CCeEEEECCEEEEeCCCCCCcccCCChHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHHHcccCCCcCHHHH
Confidence            9999999998999999999999999999999999999999999 9       9999999999999999999999988899


Q ss_pred             HHHHHHHhcCc
Q 029908          160 SEALALLKRST  170 (185)
Q Consensus       160 ~~i~~~~~~~~  170 (185)
                      +++.+.++.+.
T Consensus       399 ~e~~~~~~~~~  409 (426)
T PLN02813        399 VELAESFALHL  409 (426)
T ss_pred             HHHHHHHHHHh
Confidence            99988877654

>TIGR03828 pfkB 1-phosphofructokinase

Probab=99.94  E-value=7.9e-26  Score=183.36  Aligned_cols=150  Identities=31%  Similarity=0.349  Sum_probs=126.5

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~~vvit   77 (185)
                      +.++++|+++++||+.        ....+   .+...+|++++|+.|++.+++....+.+++    +.+.+.|++.||+|
T Consensus       151 ~~~~~~~~~v~~D~~~--------~~~~~---~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT  219 (304)
T TIGR03828       151 ALAREKGAKVILDTSG--------EALRD---GLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARELLDLGAENVLIS  219 (304)
T ss_pred             HHHHHcCCEEEEECCh--------HHHHH---HHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence            5678899999999973        11121   222457899999999999998764433332    35667899999999


Q ss_pred             cCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCC
Q 029908           78 LGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALP  157 (185)
Q Consensus        78 ~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~  157 (185)
                      +|.+|++++++++.+++|+++++++|++||||+|.|+|+++|++|.+       +++|+++|+++|+.++++.|+.  +|
T Consensus       220 ~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaF~a~~l~~l~~g~~-------~~~a~~~a~~~Aa~~~~~~G~~--~p  290 (304)
T TIGR03828       220 LGADGALLVTKEGALFAQPPKGEVVSTVGAGDSMVAGFLAGLESGLS-------LEEALRLAVAAGSAAAFSEGTG--LP  290 (304)
T ss_pred             cCCCCcEEEcCCceEEEeCCCccccCCcChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCcCCC--CC
Confidence            99999999988888889998889999999999999999999999999       9999999999999999999974  79


Q ss_pred             CHHHHHHHHhcCcc
Q 029908          158 TESEALALLKRSTI  171 (185)
Q Consensus       158 ~~~~i~~~~~~~~~  171 (185)
                      +++++++++.++++
T Consensus       291 ~~~~~~~~~~~~~~  304 (304)
T TIGR03828       291 DPEDIEELLPQVTI  304 (304)
T ss_pred             CHHHHHHHHhcccC
Confidence            99999999988764

This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).

>PRK09513 fruK 1-phosphofructokinase; Provisional

Probab=99.94  E-value=1.3e-25  Score=183.26  Aligned_cols=152  Identities=19%  Similarity=0.288  Sum_probs=128.2

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~~vvit   77 (185)
                      +.++++|.++++||+.        ....   ..+.++++++++|++|+..+++....+.+++    ..+.+.|++.|++|
T Consensus       155 ~~a~~~g~~v~~D~~~--------~~~~---~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt  223 (312)
T PRK09513        155 TRLRSQCPCIIFDSSR--------EALV---AGLKAAPWLVKPNRRELEIWAGRKLPELKDVIEAAHALREQGIAHVVIS  223 (312)
T ss_pred             HHHHhcCCEEEEECCh--------HHHH---HHhccCCeEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence            4577789999999973        1122   2234578999999999999998765444332    25667899999999


Q ss_pred             cCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCC
Q 029908           78 LGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALP  157 (185)
Q Consensus        78 ~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~  157 (185)
                      +|++|++++.+++.++.++++++++|++||||+|+|||+++|++|++       +++|+++|+++|+.++.+.|  .++|
T Consensus       224 ~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~-------~~~a~~~A~a~Aa~~~~~~~--~~~~  294 (312)
T PRK09513        224 LGAEGALWVNASGEWIAKPPACDVVSTVGAGDSMVGGLIYGLLMRES-------SEHTLRLATAVSALAVSQSN--VGIT  294 (312)
T ss_pred             eCCCCcEEEeCCceEEecCCCccccCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhhCCC--CCCC
Confidence            99999999888877888888889999999999999999999999999       99999999999999999997  4789


Q ss_pred             CHHHHHHHHhcCcchh
Q 029908          158 TESEALALLKRSTIID  173 (185)
Q Consensus       158 ~~~~i~~~~~~~~~~~  173 (185)
                      +++++++++.++.+++
T Consensus       295 ~~~e~~~~l~~~~~~~  310 (312)
T PRK09513        295 DRPQLAAMMARVDLTP  310 (312)
T ss_pred             CHHHHHHHHhceEEEe
Confidence            9999999998887654

>TIGR01231 lacC tagatose-6-phosphate kinase

Probab=99.94  E-value=1.9e-25  Score=182.07  Aligned_cols=153  Identities=20%  Similarity=0.218  Sum_probs=128.8

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCC-CHHHHH----HhcCCCCcEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI-DDESAL----SLWHPNLKLLLV   76 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~-~~~~~~----~l~~~g~~~vvi   76 (185)
                      +.++++|+++++|++.+        .. +.+.+.++++|++++|++|++.+++.+.. +.+++.    ++...|++.|++
T Consensus       150 ~~a~~~g~~v~~D~~~~--------~~-~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~viv  220 (309)
T TIGR01231       150 ERCQNKGVPVVLDCSGA--------TL-QTVLENPAKPTVIKPNIEELSQLLNQELTEDLESLKQALSQPLFSGIEWIIV  220 (309)
T ss_pred             HHHHhCCCeEEEECChH--------HH-HHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            46788999999999842        11 23445567899999999999999986532 323322    444579999999


Q ss_pred             EcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCC
Q 029908           77 TLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPAL  156 (185)
Q Consensus        77 t~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~  156 (185)
                      |+|++|++++++++.+++|+++++++|++||||+|+|||+++|++|++       +++|+++|+++|++++++.++.  .
T Consensus       221 T~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~agfl~~l~~g~~-------~~~a~~~a~a~aa~~~~~~~~~--~  291 (309)
T TIGR01231       221 SLGAQGAFAKHGHTFYKVNIPTISVVNPVGSGDSTVAGITSALLNHES-------DHDLLKKANTLGMLNAQEAQTG--H  291 (309)
T ss_pred             ccCCCceEEEeCCeeEEeeCCccCcCCCcchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCcccC--C
Confidence            999999999998888899999999999999999999999999999999       9999999999999999988864  4


Q ss_pred             CCHHHHHHHHhcCcch
Q 029908          157 PTESEALALLKRSTII  172 (185)
Q Consensus       157 ~~~~~i~~~~~~~~~~  172 (185)
                      .++++++++++++.+.
T Consensus       292 ~~~~~~~~~~~~i~~~  307 (309)
T TIGR01231       292 VNLNNYDDLFNQIEVL  307 (309)
T ss_pred             CCHHHHHHHHhceEEE
Confidence            6899999999988765

This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.

>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP

Probab=99.94  E-value=2.1e-25  Score=179.78  Aligned_cols=140  Identities=38%  Similarity=0.559  Sum_probs=122.2

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHH----HHHhcCCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDES----ALSLWHPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~----~~~l~~~g~~~vvit   77 (185)
                      +.++++|++|++||+....          ...++++++|++++|++|++.+++....+.++    ++.+.+.|++.|++|
T Consensus       149 ~~a~~~g~~v~~D~~~~~~----------~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt  218 (292)
T cd01174         149 RAARRAGVTVILNPAPARP----------LPAELLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLAKGVKNVIVT  218 (292)
T ss_pred             HHHHhcCCEEEEeCCCcCc----------CcHHHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence            5678899999999975422          12578889999999999999999876554332    235667899999999


Q ss_pred             cCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCC
Q 029908           78 LGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALP  157 (185)
Q Consensus        78 ~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~  157 (185)
                      +|.+|++++++++.+++|+++++++|++||||+|+|+|++++++|.+       +++|+++|+++|+.++++.|+..++|
T Consensus       219 ~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGD~F~ag~l~~l~~g~~-------~~~al~~a~~~Aa~~~~~~G~~~~~~  291 (292)
T cd01174         219 LGAKGALLASGGEVEHVPAFKVKAVDTTGAGDTFIGALAAALARGLS-------LEEAIRFANAAAALSVTRPGAQPSIP  291 (292)
T ss_pred             eCCCceEEEeCCceEEecCCCcccCCCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCcCCCCCCC
Confidence            99999999998888899999999999999999999999999999999       99999999999999999999998877


Q ss_pred             C
Q 029908          158 T  158 (185)
Q Consensus       158 ~  158 (185)
                      +
T Consensus       292 ~  292 (292)
T cd01174         292 T  292 (292)
T ss_pred             C
Confidence            4

This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.

>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family

Probab=99.94  E-value=3e-25  Score=180.20  Aligned_cols=148  Identities=30%  Similarity=0.370  Sum_probs=126.0

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~~vvit   77 (185)
                      +.++++|+++++||+.        ....   ..+..++|++++|+.|+..+++....+.+++    +.+...|++.||||
T Consensus       151 ~~~~~~g~~v~~D~~~--------~~~~---~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vviT  219 (303)
T TIGR03168       151 AIARKRGAKVILDTSG--------EALR---EALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARELLDRGAENVLVS  219 (303)
T ss_pred             HHHHHCCCEEEEECCc--------HHHH---HHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence            5678899999999973        1122   2233589999999999999998765433322    24556889999999


Q ss_pred             cCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCC
Q 029908           78 LGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALP  157 (185)
Q Consensus        78 ~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~  157 (185)
                      +|.+|++++++++.+++|+++++++|++||||+|+|+|++++++|.+       +.+|+++|+++|+.++++.|+.  .|
T Consensus       220 ~g~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~F~a~~~~~l~~g~~-------i~~a~~~A~~~aa~~~~~~G~~--~~  290 (303)
T TIGR03168       220 LGADGALLVTKEGALKATPPKVEVVNTVGAGDSMVAGFLAGLARGLS-------LEEALRFAVAAGSAAAFSPGTG--LP  290 (303)
T ss_pred             ecCCCcEEEeCCceEEeeCCcceeecCcCHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCCcC--CC
Confidence            99999999998888899999999999999999999999999999999       9999999999999999999985  58


Q ss_pred             CHHHHHHHHhcC
Q 029908          158 TESEALALLKRS  169 (185)
Q Consensus       158 ~~~~i~~~~~~~  169 (185)
                      +++++++++.++
T Consensus       291 ~~~~~~~~~~~~  302 (303)
T TIGR03168       291 DPEDVEELLDQV  302 (303)
T ss_pred             CHHHHHHHHhhc
Confidence            999999988775

This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.

>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor

Probab=99.94  E-value=1.8e-25  Score=182.27  Aligned_cols=142  Identities=25%  Similarity=0.345  Sum_probs=121.1

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCC-CHHHHHHhcCCCCcEEEEEcCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI-DDESALSLWHPNLKLLLVTLGE   80 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~-~~~~~~~l~~~g~~~vvit~G~   80 (185)
                      +.++++|++|++||+...    ..+...+.+.++++++|++++|++|++.|++.... ..+.+.++++.+++.||+|+|+
T Consensus       168 ~~a~~~g~~v~~d~~~~~----~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~~~~~~a~~l~~~g~~~vvvt~G~  243 (312)
T cd01168         168 EHAKENGVKIALNLSAPF----IVQRFKEALLELLPYVDILFGNEEEAEALAEAETTDDLEAALKLLALRCRIVVITQGA  243 (312)
T ss_pred             HHHHHcCCEEEEeCCcHH----HHHHHHHHHHHHHhhCCEEEeCHHHHHHHhCCCCCChHHHHHHHHhcCCCEEEEecCC
Confidence            567888999999996310    02334566788999999999999999999985222 2234457778899999999999


Q ss_pred             CceEEEEcCceeEecCcc-cccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCC
Q 029908           81 HGCRYYTKSFKGAVDAFR-VKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIP  154 (185)
Q Consensus        81 ~G~~~~~~~~~~~~~~~~-~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~  154 (185)
                      +|++++++++.+++|+++ ++++|++||||+|+|||++++++|++       +++|+++|+++|+++|++.|++.
T Consensus       244 ~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~l~~l~~g~~-------~~~a~~~a~~~Aa~~v~~~G~~~  311 (312)
T cd01168         244 KGAVVVEGGEVYPVPAIPVEKIVDTNGAGDAFAGGFLYGLVQGEP-------LEECIRLGSYAAAEVIQQLGPRL  311 (312)
T ss_pred             CCeEEEECCEEEeCCCCCCCCcccCCchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccCCCC
Confidence            999999988889999998 89999999999999999999999999       99999999999999999999763

The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.

>PLN02379 pfkB-type carbohydrate kinase family protein

Probab=99.93  E-value=2.5e-25  Score=185.49  Aligned_cols=155  Identities=25%  Similarity=0.277  Sum_probs=125.5

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhc--cccEEEcCHHHHhHhhCCC-CCCHHHHHHhcCCCCcEEEEEc
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWD--KAEVIKVSDVELEFLTGSD-KIDDESALSLWHPNLKLLLVTL   78 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dii~~n~~E~~~l~~~~-~~~~~~~~~l~~~g~~~vvit~   78 (185)
                      +.|+++|++|++|++....    .+..++.+.++++  ++|++++|++|+..+++.. ..+.+.+.++++.+++.++||+
T Consensus       198 ~~A~~~g~~v~lD~s~~~~----v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~~~~~~~~~~~~~~l~~~~~~vvvT~  273 (367)
T PLN02379        198 RLAKQEGLSVSLDLASFEM----VRNFRSPLLQLLESGKIDLCFANEDEARELLRGEQESDPEAALEFLAKYCNWAVVTL  273 (367)
T ss_pred             HHHHHcCCEEEEeccchhh----hhhhhHHHHHHhhcCCccEEEcCHHHHHHHhcCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence            5688999999999974211    1233556667774  8999999999999998643 2234445556667899999999


Q ss_pred             CCCceEEEEcCceeEecCcc-cccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCC
Q 029908           79 GEHGCRYYTKSFKGAVDAFR-VKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALP  157 (185)
Q Consensus        79 G~~G~~~~~~~~~~~~~~~~-~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~  157 (185)
                      |++|++++++++.+++|+++ .+++||+||||+|+|||++++++|++       +++|+++|+++|+.+|++.|++.   
T Consensus       274 G~~Ga~~~~~~~~~~v~a~~~~~vVDTtGAGDaFaagfl~gl~~G~~-------l~~a~~~g~~aAa~vi~~~G~~~---  343 (367)
T PLN02379        274 GSKGCIARHGKEVVRVPAIGETNAVDATGAGDLFASGFLYGLIKGLS-------LEECCKVGACSGGSVVRALGGEV---  343 (367)
T ss_pred             CCCCeEEEECCEEEEecCCCCCCcccCCChhHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHhccCCCC---
Confidence            99999999998889999987 47999999999999999999999999       99999999999999999999873   


Q ss_pred             CHHHHHHHHhcCc
Q 029908          158 TESEALALLKRST  170 (185)
Q Consensus       158 ~~~~i~~~~~~~~  170 (185)
                      +.++.+++.++..
T Consensus       344 ~~~~~~~~~~~~~  356 (367)
T PLN02379        344 TPENWQWMYKQMQ  356 (367)
T ss_pred             ChHHHHHHHHHHH
Confidence            5555555544433

>PRK10294 6-phosphofructokinase 2; Provisional

Probab=99.93  E-value=3.1e-25  Score=180.81  Aligned_cols=149  Identities=24%  Similarity=0.306  Sum_probs=124.1

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCC-CcEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPN-LKLLLV   76 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g-~~~vvi   76 (185)
                      +.++++|++|++||+.        +..+..+  .++++|++++|++|+..|++....+.+++    +++++.+ ++.|++
T Consensus       154 ~~a~~~g~~v~~D~~~--------~~~~~~~--~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~l~~~~~~~~vvv  223 (309)
T PRK10294        154 SAAQKQGIRCIIDSSG--------DALSAAL--AIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQELVNSGKAKRVVV  223 (309)
T ss_pred             HHHHHcCCeEEEeCCC--------HHHHHHH--hcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCCEEEE
Confidence            5678899999999962        2222211  24689999999999999998765443322    3555666 899999


Q ss_pred             EcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCC
Q 029908           77 TLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPAL  156 (185)
Q Consensus        77 t~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~  156 (185)
                      |.|++|++++++++.+++++++++++|++||||+|+|||+++|++|++       +.+|+++|+++|++++++.|+.+  
T Consensus       224 T~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~ag~l~~l~~g~~-------~~~al~~a~a~aa~~v~~~G~~~--  294 (309)
T PRK10294        224 SLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENAS-------LEEMVRFGVAAGSAATLNQGTRL--  294 (309)
T ss_pred             ecCCCceEEEcCCccEEEeCCCcccCCCcchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCCCCC--
Confidence            999999999988888889998999999999999999999999999999       99999999999999999999874  


Q ss_pred             CCHHHHHHHHhcC
Q 029908          157 PTESEALALLKRS  169 (185)
Q Consensus       157 ~~~~~i~~~~~~~  169 (185)
                      ..+++++++.+++
T Consensus       295 ~~~~~~~~~~~~~  307 (309)
T PRK10294        295 CSHDDTQKIYAYL  307 (309)
T ss_pred             CCHHHHHHHHHHh
Confidence            5888888888754

>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)

Probab=99.93  E-value=2.9e-25  Score=179.06  Aligned_cols=142  Identities=39%  Similarity=0.575  Sum_probs=121.8

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCC-H-HHHHHhcCCCCcEEEEEcC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKID-D-ESALSLWHPNLKLLLVTLG   79 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~-~-~~~~~l~~~g~~~vvit~G   79 (185)
                      +.++++|+++++||+.++..|. .+...+.+.++++++|++++|+.|++.+++....+ . +.++++ +.|++.|+||+|
T Consensus       150 ~~~~~~~~~v~~D~~~~~~~~~-~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~l-~~g~~~viit~G  227 (294)
T cd01166         150 EAAKARGVTVSFDLNYRPKLWS-AEEAREALEELLPYVDIVLPSEEEAEALLGDEDPTDAAERALAL-ALGVKAVVVKLG  227 (294)
T ss_pred             HHHHHcCCEEEECCCCcchhcC-hHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCchhHHHHHHhh-cCCccEEEEEEc
Confidence            4677889999999997765554 34455677889999999999999999998875421 1 112244 679999999999


Q ss_pred             CCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCC
Q 029908           80 EHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGA  152 (185)
Q Consensus        80 ~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~  152 (185)
                      ++|+++++++..+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+
T Consensus       228 ~~G~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~-------~~~a~~~a~~~aa~~i~~~G~  293 (294)
T cd01166         228 AEGALVYTGGGRVFVPAYPVEVVDTTGAGDAFAAGFLAGLLEGWD-------LEEALRFANAAAALVVTRPGD  293 (294)
T ss_pred             CCceEEEECCceEEeCCCCcccccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhcCCC
Confidence            999999998888999999999999999999999999999999999       999999999999999999986

KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.

>PRK09850 pseudouridine kinase; Provisional

Probab=99.93  E-value=3.6e-25  Score=180.79  Aligned_cols=148  Identities=21%  Similarity=0.329  Sum_probs=125.4

Q ss_pred             cCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHH---H-HHhcCCCCcEEEEEcCCCc
Q 029908            7 AGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDES---A-LSLWHPNLKLLLVTLGEHG   82 (185)
Q Consensus         7 ~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~---~-~~l~~~g~~~vvit~G~~G   82 (185)
                      +|+++++||+..   |     ....+.++++++|++++|++|+..|++....+.++   + ..+.+.|++.||||.|++|
T Consensus       157 ~g~~v~~D~~~~---~-----~~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G  228 (313)
T PRK09850        157 ANVPVFVDPVSA---W-----KCVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMGGDG  228 (313)
T ss_pred             cCCCEEEEcCCH---H-----HHHHHHhhhccceEEccCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCce
Confidence            588999999741   1     12346778899999999999999999865433222   2 2555689999999999999


Q ss_pred             eEEEEcC-ceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHHH
Q 029908           83 CRYYTKS-FKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESE  161 (185)
Q Consensus        83 ~~~~~~~-~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~~  161 (185)
                      +++++++ +..++|+++++++|++||||+|+|+|+++|++|++       +.+|+++|+++|+.++++.++.+..|+.++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfi~~l~~g~~-------~~eal~~a~a~aa~~~~~~~~~~~~~~~~~  301 (313)
T PRK09850        229 VYYSDISGESGWSAPIKTNVINVTGAGDAMMAGLASCWVDGMP-------FAESVRFAQGCSSMALSCEYTNNPDLSIAN  301 (313)
T ss_pred             EEEEcCCCCeEecCCCCcccccCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCCCCCcccCHHH
Confidence            9999854 45678888889999999999999999999999999       999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q 029908          162 ALALLKRS  169 (185)
Q Consensus       162 i~~~~~~~  169 (185)
                      +++++.+.
T Consensus       302 ~~~~~~~~  309 (313)
T PRK09850        302 VISLVENA  309 (313)
T ss_pred             HHHHHHHh
Confidence            99998754

>cd01944 YegV_kinase_like YegV-like sugar kinase

Probab=99.93  E-value=7.9e-25  Score=176.52  Aligned_cols=134  Identities=27%  Similarity=0.432  Sum_probs=115.5

Q ss_pred             HcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHH-HHHhcCCCCcEEEEEcCCCceE
Q 029908            6 EAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDES-ALSLWHPNLKLLLVTLGEHGCR   84 (185)
Q Consensus         6 ~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~-~~~l~~~g~~~vvit~G~~G~~   84 (185)
                      +.+.++++||+++...|.     .+.+.++++++|++++|++|+..|++....+... +.++...+++.|++|+|++|++
T Consensus       154 ~~~~~v~~D~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~vvvt~G~~Ga~  228 (289)
T cd01944         154 PAGTTLVFDPGPRISDIP-----DTILQALMAKRPIWSCNREEAAIFAERGDPAAEASALRIYAKTAAPVVVRLGSNGAW  228 (289)
T ss_pred             cCCCEEEEcCcccccccC-----HHHHHHHHhcCCEEccCHHHHHHHhCCCCcchHHHHHHHHhccCCeEEEEECCCcEE
Confidence            367999999998876554     3567888999999999999999999876543322 2356678889999999999999


Q ss_pred             EEE-cCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccC
Q 029908           85 YYT-KSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKG  151 (185)
Q Consensus        85 ~~~-~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g  151 (185)
                      +++ ++..+++|+++++++|++||||+|+|||++++++|.+       +++|+++|+++|+.++++.|
T Consensus       229 ~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~~~~g~~-------~~~a~~~a~a~aa~~~~~~G  289 (289)
T cd01944         229 IRLPDGNTHIIPGFKVKAVDTIGAGDTHAGGMLAGLAKGMS-------LADAVLLANAAAAIVVTRSG  289 (289)
T ss_pred             EEecCCCeEEecCCCCCCccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhhhccCC
Confidence            998 4566788989999999999999999999999999999       99999999999999999876

Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.

>TIGR02152 D_ribokin_bact ribokinase

Probab=99.93  E-value=8.1e-25  Score=176.67  Aligned_cols=146  Identities=34%  Similarity=0.507  Sum_probs=123.8

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHH----HHHHhcCCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE----SALSLWHPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~----~~~~l~~~g~~~vvit   77 (185)
                      +.++++|++|++||+....         ....++++++|++++|.+|+..+.+....+.+    ..+.+.+.|++.++||
T Consensus       144 ~~~~~~~~~v~~D~~~~~~---------~~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt  214 (293)
T TIGR02152       144 KIAKKHGVKVILNPAPAIK---------DLDDELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLEKGVKNVIIT  214 (293)
T ss_pred             HHHHHcCCEEEEECCcCcc---------cchHHHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHHHcCCCeEEEE
Confidence            4677889999999975321         11256788999999999999999887533221    2235666799999999


Q ss_pred             cCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCC
Q 029908           78 LGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALP  157 (185)
Q Consensus        78 ~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~  157 (185)
                      .|.+|+.+++++..+++|+++++++|++||||+|+|||++++++|++       +++++++|+.+|+.++++.|+...+|
T Consensus       215 ~G~~g~~~~~~~~~~~~~~~~~~~vdt~GAGDaf~Ag~l~~l~~g~~-------~~~al~~a~~~Aa~~~~~~G~~~~~~  287 (293)
T TIGR02152       215 LGSKGALLVSKDESKLIPAFKVKAVDTTAAGDTFNGAFAVALAEGKS-------LEDAIRFANAAAAISVTRKGAQSSIP  287 (293)
T ss_pred             eCCCceEEEeCCceeEccCCCCceeCCCCcHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHcccCcccCCC
Confidence            99999999999888899999999999999999999999999999999       99999999999999999999987788


Q ss_pred             CHHHHH
Q 029908          158 TESEAL  163 (185)
Q Consensus       158 ~~~~i~  163 (185)
                      ++++++
T Consensus       288 ~~~~~~  293 (293)
T TIGR02152       288 YLEEVE  293 (293)
T ss_pred             ChHHcC
Confidence            877763

This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.

>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]

Probab=99.93  E-value=2.1e-24  Score=173.43  Aligned_cols=153  Identities=27%  Similarity=0.407  Sum_probs=135.6

Q ss_pred             ChHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHH----HhcCCCCcEEEE
Q 029908            1 MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL----SLWHPNLKLLLV   76 (185)
Q Consensus         1 l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~----~l~~~g~~~vvi   76 (185)
                      ++.++++|++|++|.+        .+.+.+.+..   .+++|+||.+|++.+++.+..+.++..    +++..|+++|+|
T Consensus       152 i~~~~~~g~~vilD~S--------g~~L~~~L~~---~P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViV  220 (310)
T COG1105         152 IRILRQQGAKVILDTS--------GEALLAALEA---KPWLIKPNREELEALFGRELTTLEDVIKAARELLAEGIENVIV  220 (310)
T ss_pred             HHHHHhcCCeEEEECC--------hHHHHHHHcc---CCcEEecCHHHHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEE
Confidence            3678999999999987        3444444443   589999999999999999987654432    677899999999


Q ss_pred             EcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCC
Q 029908           77 TLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPAL  156 (185)
Q Consensus        77 t~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~  156 (185)
                      |+|..|+++.+++..++..+|++++++++||||+++|||+++++++++       +++++++|+++++.++.+.|.  +.
T Consensus       221 SlG~~Gal~~~~~~~~~a~~p~~~vvstVGAGDs~VAGf~~~~~~~~~-------~e~~l~~avA~g~a~~~~~~~--~~  291 (310)
T COG1105         221 SLGADGALLVTAEGVYFASPPKVQVVSTVGAGDSMVAGFLAGLLKGKS-------LEEALRFAVACGAAAASQKGT--GI  291 (310)
T ss_pred             EecCcccEEEccCCeEEEeCCCcceecCcCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhhcCCC--CC
Confidence            999999999999999999999999999999999999999999999999       999999999999999999986  57


Q ss_pred             CCHHHHHHHHhcCcchh
Q 029908          157 PTESEALALLKRSTIID  173 (185)
Q Consensus       157 ~~~~~i~~~~~~~~~~~  173 (185)
                      +++++++++..++.+++
T Consensus       292 ~~~~~~~~~~~~v~v~~  308 (310)
T COG1105         292 PDLDQLKKIYAQVTVEK  308 (310)
T ss_pred             CCHHHHHHHhhheEEEe
Confidence            89999999999988764

>cd01945 ribokinase_group_B Ribokinase-like subgroup B

Probab=99.93  E-value=4.6e-25  Score=177.27  Aligned_cols=139  Identities=34%  Similarity=0.397  Sum_probs=119.2

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.++++|.++++|+++.+        ..+ +.++++++|++++|++|++.+++....  +....+.+.+++.||||+|++
T Consensus       145 ~~~~~~g~~v~~~~~~~~--------~~~-~~~~~~~~dil~~n~~e~~~l~~~~~~--~~~~~l~~~~~~~vivt~G~~  213 (284)
T cd01945         145 QEARARGIPIPLDLDGGG--------LRV-LEELLPLADHAICSENFLRPNTGSADD--EALELLASLGIPFVAVTLGEA  213 (284)
T ss_pred             HHHHHcCCCeeEeccCCc--------ccc-hHHHhccCCEEEeChhHHhhhcCCCHH--HHHHHHHhcCCcEEEEEECCC
Confidence            567889998887775432        122 677889999999999999999876432  334456678999999999999


Q ss_pred             ceEEEE-cCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCC
Q 029908           82 GCRYYT-KSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPT  158 (185)
Q Consensus        82 G~~~~~-~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~  158 (185)
                      |+++++ +++.+++|+++++++|++||||+|+|||+++|++|++       +++++++|+++|+.++++.|+..++|+
T Consensus       214 G~~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~l~~g~~-------~~~al~~a~~~Aa~~~~~~G~~~~~~~  284 (284)
T cd01945         214 GCLWLERDGELFHVPAFPVEVVDTTGAGDVFHGAFAHALAEGMP-------LREALRFASAAAALKCRGLGGRAGLPT  284 (284)
T ss_pred             CeEEEcCCCCEEecCCCccccccCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccCCcccCCC
Confidence            999998 6778899999999999999999999999999999999       999999999999999999999887774

Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .

>cd01943 MAK32 MAK32 kinase

Probab=99.92  E-value=1.2e-24  Score=179.02  Aligned_cols=157  Identities=18%  Similarity=0.260  Sum_probs=128.2

Q ss_pred             cCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCH---H--HH----H---HhcCCCCcEE
Q 029908            7 AGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD---E--SA----L---SLWHPNLKLL   74 (185)
Q Consensus         7 ~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~---~--~~----~---~l~~~g~~~v   74 (185)
                      ++.++++||++...    .....+.+.++++++|++++|++|+..+++....+.   +  ..    .   ++...+++.|
T Consensus       153 ~g~~~~~d~~~~~~----~~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v  228 (328)
T cd01943         153 TRPKIVWEPLPDSC----DPENLEDLLQALPRVDVFSPNLEEAARLLGLPTSEPSSDEEKEAVLQALLFSGILQDPGGGV  228 (328)
T ss_pred             CccEEEEecCCccc----ChhhHHHHHHHhccCCEECCCHHHHHHHhCCCCCCccchhhhhhhHHHHHHHhhhccCCCEE
Confidence            78899999874211    112345678999999999999999999998754321   1  11    1   1245789999


Q ss_pred             EEEcCCCceEEEE--cCceeEecCccc---ccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhc
Q 029908           75 LVTLGEHGCRYYT--KSFKGAVDAFRV---KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTK  149 (185)
Q Consensus        75 vit~G~~G~~~~~--~~~~~~~~~~~~---~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~  149 (185)
                      |||+|++|+++++  ++..+++|++++   +++|++||||+|+|||+++|++|++       +++|+++|+++|++++++
T Consensus       229 vvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~vvDttGAGDaF~agfl~~l~~g~~-------~~~al~~a~a~Aa~~v~~  301 (328)
T cd01943         229 VLRCGKLGCYVGSADSGPELWLPAYHTKSTKVVDPTGGGNSFLGGFAAGLALTKS-------IDEACIYGSVAASFAIEQ  301 (328)
T ss_pred             EEEeCCCCCEEEecCCCceEecCCccCCCCcccCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcc
Confidence            9999999999998  456788999888   8999999999999999999999999       999999999999999999


Q ss_pred             cCCCCCCCCHHHHHHHHhcCcchhhhh
Q 029908          150 KGAIPALPTESEALALLKRSTIIDKIM  176 (185)
Q Consensus       150 ~g~~~~~~~~~~i~~~~~~~~~~~~~~  176 (185)
                      .|..  ..++++-+++|+..++++|+.
T Consensus       302 ~G~~--~~~~~~~~~~~~~~~~~~~~~  326 (328)
T cd01943         302 VGLP--RLTKVEGEELWNGETVEERLK  326 (328)
T ss_pred             CCCC--cccCCCcccccCCCCHHHHHh
Confidence            9963  347788889999999888854

MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.

>PRK15074 inosine/guanosine kinase; Provisional

Probab=99.92  E-value=2e-24  Score=182.72  Aligned_cols=154  Identities=19%  Similarity=0.233  Sum_probs=117.1

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHH-HhcCCCCcEEEEEcCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL-SLWHPNLKLLLVTLGE   80 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~-~l~~~g~~~vvit~G~   80 (185)
                      +.|+++|++|++||+.+...+...+.+.   ..+++++|++++|++|+..|++..+  .+++. .+. .+++.|+||.|+
T Consensus       214 ~~Ake~G~~VslD~s~~~~v~~~~~~~~---e~l~~~vDILf~NeeEa~~LtG~~d--~eea~~~L~-~~~~~VVVTlG~  287 (434)
T PRK15074        214 EYAKKHNVPVVLTLGTKFVIEDNPQWWQ---EFLKEHVSILAMNEDEAEALTGESD--PLLASDKAL-DWVDLVLCTAGP  287 (434)
T ss_pred             HHHHHcCCEEEEECcchhhccccHHHHH---HHHHhcCCEEEcCHHHHHHHhCCCC--HHHHHHHHH-cCCCEEEEEECC
Confidence            5688999999999997654443222222   3455799999999999999998643  33343 444 468999999999


Q ss_pred             CceEEEEcCc-------e--------------------------------eEecCc---ccccccCCCcchHHHHHHHHH
Q 029908           81 HGCRYYTKSF-------K--------------------------------GAVDAF---RVKTVDTTGAGDAFVGALLCK  118 (185)
Q Consensus        81 ~G~~~~~~~~-------~--------------------------------~~~~~~---~~~~~d~~GaGDaf~A~~~~~  118 (185)
                      +|++++..++       .                                .++|++   +++++|||||||+|+|||+|+
T Consensus       288 ~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDttGAGD~f~~gfl~~  367 (434)
T PRK15074        288 IGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAMRKKDCQNPLRVYSHIAPYMGGPEKIMNTNGAGDGALSALLHD  367 (434)
T ss_pred             CCEEEEecccccccCceeeeccccccccccchhcccchhccccccccccccccCcccCCCCcceeCCCcHHHHHHHHHHH
Confidence            9999975221       1                                277887   778999999999999999999


Q ss_pred             HHccC-C------------CCCChHHHHHHHHHHHHHhHHHhhccCC--CCCCCCHHH
Q 029908          119 IVDDQ-S------------AIEDEPRLREILKFANACGALSTTKKGA--IPALPTESE  161 (185)
Q Consensus       119 l~~g~-~------------~~~~~~~~~~a~~~a~~~aa~~~~~~g~--~~~~~~~~~  161 (185)
                      |++|. +            .++++.++.+|+++|+.+|+.++++.|+  ..++|++++
T Consensus       368 l~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~vi~~~G~~~~~~~p~~~~  425 (434)
T PRK15074        368 ITANSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVSYEVLNQHSPRLSRGLPERED  425 (434)
T ss_pred             HHCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Confidence            99997 1            1112234999999999999999999999  456777543

>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I

Probab=99.92  E-value=3e-24  Score=175.12  Aligned_cols=143  Identities=27%  Similarity=0.315  Sum_probs=119.4

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCC--H-HHHHHhc-CCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKID--D-ESALSLW-HPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~--~-~~~~~l~-~~g~~~vvit   77 (185)
                      +.++++|++|++||+.+.             .+.++++|++++|++|++.|++.....  . +.+.+++ ..|++.||||
T Consensus       167 ~~a~~~g~~v~~D~~~~~-------------~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~l~~~~g~~~vivT  233 (315)
T TIGR02198       167 AAARKHGKPVLVDPKGKD-------------FSRYRGATLITPNRKEAEAAVGACDTEAELVQAAEKLLEELDLEALLVT  233 (315)
T ss_pred             HHHHhcCCCEEEeCCCcc-------------hhhcCCCcEECCCHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            568889999999998531             134679999999999999999842211  1 1222444 3689999999


Q ss_pred             cCCCceEEEEc-CceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCC
Q 029908           78 LGEHGCRYYTK-SFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPAL  156 (185)
Q Consensus        78 ~G~~G~~~~~~-~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~  156 (185)
                      .|++|++++++ +..+++|+++++++|++||||+|.|||++++++|++       +++|+++|+++|+.++++.|+..  
T Consensus       234 ~G~~G~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~ag~~~~l~~g~~-------~~~al~~A~~~aa~~~~~~G~~~--  304 (315)
T TIGR02198       234 RSEKGMTLFTREGEPIHIPAQAREVYDVTGAGDTVIATLALALAAGAS-------LEEACRLANAAAGVVVGKLGTAT--  304 (315)
T ss_pred             cCCCCeEEEecCCCeEEecCCCCCCCCCcCccHHHHHHHHHHHHcCCC-------HHHHHHHHHHHhhhhhccCCCCC--
Confidence            99999999884 578889999999999999999999999999999999       99999999999999999999874  


Q ss_pred             CCHHHHHHHH
Q 029908          157 PTESEALALL  166 (185)
Q Consensus       157 ~~~~~i~~~~  166 (185)
                      ++++++++.+
T Consensus       305 ~~~~~~~~~~  314 (315)
T TIGR02198       305 VSPAELANAL  314 (315)
T ss_pred             CCHHHHHHHh
Confidence            6899998765

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.

>PTZ00247 adenosine kinase; Provisional

Probab=99.92  E-value=2.5e-24  Score=178.04  Aligned_cols=142  Identities=20%  Similarity=0.252  Sum_probs=116.2

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCC---CCCHHHHH-HhcC------CCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSD---KIDDESAL-SLWH------PNL   71 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~---~~~~~~~~-~l~~------~g~   71 (185)
                      +.++++|++|++|++..  .+  .....+.+.++++++|++++|++|++.|++..   ..+.+.+. .+.+      .++
T Consensus       182 ~~a~~~g~~v~~d~~~~--~~--~~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~~  257 (345)
T PTZ00247        182 KHARESGKLFCLNLSAP--FI--SQFFFERLLQVLPYVDILFGNEEEAKTFAKAMKWDTEDLKEIAARIAMLPKYSGTRP  257 (345)
T ss_pred             HHHHHcCCEEEEECCcH--HH--HHHHHHHHHHHHhhCCEEEeCHHHHHHHhhccCCCccCHHHHHHHHHhccccccCCC
Confidence            57889999999998631  11  12334567889999999999999999999832   12222222 3322      357


Q ss_pred             cEEEEEcCCCceEEEEcCceeEecCccc---ccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhh
Q 029908           72 KLLLVTLGEHGCRYYTKSFKGAVDAFRV---KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTT  148 (185)
Q Consensus        72 ~~vvit~G~~G~~~~~~~~~~~~~~~~~---~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~  148 (185)
                      +.||||+|++|++++++++.+++|++++   +++||+||||+|+|||+++|++|++       +++|+++|+++|+++|+
T Consensus       258 ~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~agfl~~l~~g~~-------~~~al~~a~~aAa~~v~  330 (345)
T PTZ00247        258 RLVVFTQGPEPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVGGFLAQYANGKD-------IDRCVEAGHYSAQVIIQ  330 (345)
T ss_pred             CEEEEecCCCceEEEECCEEEEEeccccCCCCccCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHh
Confidence            8999999999999999988888998887   5899999999999999999999999       99999999999999999


Q ss_pred             ccCCCC
Q 029908          149 KKGAIP  154 (185)
Q Consensus       149 ~~g~~~  154 (185)
                      +.|+..
T Consensus       331 ~~Ga~~  336 (345)
T PTZ00247        331 HNGCTY  336 (345)
T ss_pred             ccCCCC
Confidence            999873

>cd01942 ribokinase_group_A Ribokinase-like subgroup A

Probab=99.92  E-value=2.3e-24  Score=172.67  Aligned_cols=132  Identities=32%  Similarity=0.510  Sum_probs=112.4

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHh---HhhCCCCCCHHHHHHhcCCCCcEEEEEc
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELE---FLTGSDKIDDESALSLWHPNLKLLLVTL   78 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~---~l~~~~~~~~~~~~~l~~~g~~~vvit~   78 (185)
                      +.+++.|++|++||+.+...|.     .+.+.++++++|++++|++|+.   .+++....   .    ...+++.||+|+
T Consensus       143 ~~~~~~g~~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~---~----~~~~~~~vvvt~  210 (279)
T cd01942         143 RELAAGGITVSFDPGQELPRLS-----GEELEEILERADILFVNDYEAELLKERTGLSEA---E----LASGVRVVVVTL  210 (279)
T ss_pred             HHHHHcCCeEEEcchhhhhhcc-----HHHHHHHHhhCCEEecCHHHHHHHHhhcCCChH---H----HhcCCCEEEEEE
Confidence            4566789999999987655553     3556778899999999999994   55543321   1    127899999999


Q ss_pred             CCCceEEEEcCceeEecCc-ccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCC
Q 029908           79 GEHGCRYYTKSFKGAVDAF-RVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGA  152 (185)
Q Consensus        79 G~~G~~~~~~~~~~~~~~~-~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~  152 (185)
                      |++|+++++++..+++|++ +++++|++||||+|+|||+++|++|.+       +++|+++|+++|+.++++.|+
T Consensus       211 G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~-------l~~al~~a~~~Aa~~~~~~G~  278 (279)
T cd01942         211 GPKGAIVFEDGEEVEVPAVPAVKVVDTTGAGDAFRAGFLYGLLRGYD-------LEESLRLGNLAASLKVERRGA  278 (279)
T ss_pred             CCCceEEEECCceEEccCcCcCCCcCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcccCC
Confidence            9999999998888999987 889999999999999999999999999       999999999999999999986

Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.

>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose

Probab=99.92  E-value=1.8e-24  Score=175.43  Aligned_cols=135  Identities=30%  Similarity=0.370  Sum_probs=115.4

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhc-CCCCcEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLW-HPNLKLLLV   76 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~-~~g~~~vvi   76 (185)
                      +.++++|++|++||+.+.             .+.++++|++++|++|++.+++....+.+++    +.+. ..|++.|||
T Consensus       158 ~~a~~~~~~v~~D~~~~~-------------~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~vvv  224 (304)
T cd01172         158 AAARELGIPVLVDPKGRD-------------YSKYRGATLLTPNEKEAREALGDEINDDDELEAAGEKLLELLNLEALLV  224 (304)
T ss_pred             HHHHhcCCCEEEeCCCcc-------------hhhccCCcEeCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCCeEEE
Confidence            567888999999998532             1467899999999999999998753332222    2343 368999999


Q ss_pred             EcCCCceEEEE-cCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCC
Q 029908           77 TLGEHGCRYYT-KSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPA  155 (185)
Q Consensus        77 t~G~~G~~~~~-~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~  155 (185)
                      |+|++|+++++ +++.+++|+++++++|++||||+|+|||+++|++|++       +++|+++|+++|+.++++.|+.+.
T Consensus       225 t~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~ag~i~~l~~g~~-------~~~al~~a~a~Aa~~~~~~g~~~~  297 (304)
T cd01172         225 TLGEEGMTLFERDGEVQHIPALAKEVYDVTGAGDTVIATLALALAAGAD-------LEEAAFLANAAAGVVVGKVGTAPV  297 (304)
T ss_pred             EcCCCccEEEcCCCcEEEecCCCCCCCCCcCccHHHHHHHHHHHHcCCC-------HHHHHHHHHHHhheeeecCCCCCc
Confidence            99999999998 7788999999999999999999999999999999999       999999999999999999998754


Q ss_pred             C
Q 029908          156 L  156 (185)
Q Consensus       156 ~  156 (185)
                      +
T Consensus       298 ~  298 (304)
T cd01172         298 T  298 (304)
T ss_pred             C
Confidence            3

LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.

>PRK09954 putative kinase; Provisional

Probab=99.92  E-value=9e-24  Score=175.84  Aligned_cols=147  Identities=22%  Similarity=0.252  Sum_probs=119.7

Q ss_pred             cCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHH---H-HHHhcCCCCcEEEEEcCCCc
Q 029908            7 AGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE---S-ALSLWHPNLKLLLVTLGEHG   82 (185)
Q Consensus         7 ~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~---~-~~~l~~~g~~~vvit~G~~G   82 (185)
                      +++++++||...        ...+.+.++++++|++++|++|++.+++....+.+   . +..+.+.|++.||||+|++|
T Consensus       210 ~~~~v~~D~~~~--------~~~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~G~~G  281 (362)
T PRK09954        210 DEIPVFVDTVSE--------FKAGKIKHWLAHIHTLKPTQPELEILWGQAITSDADRNAAVNALHQQGVQQIFVYLPDES  281 (362)
T ss_pred             CCCcEEEECCCH--------HHhhhhhhhhccccEEecCHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            578999998731        11234577899999999999999999986543322   2 23566789999999999999


Q ss_pred             eEEEEcC-ceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHHH
Q 029908           83 CRYYTKS-FKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESE  161 (185)
Q Consensus        83 ~~~~~~~-~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~~  161 (185)
                      ++++..+ +.+++|+++++++|+|||||+|+|||++++++|.+       +++|+++|+++|++++....+...-.+.+.
T Consensus       282 ~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Ag~l~~l~~g~~-------~~eal~~a~a~Aal~~~s~~~~~~~~~~~~  354 (362)
T PRK09954        282 VFCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGLVYSFLEGYS-------FRDSARFAMACAAISRASGSLNNPTLSADN  354 (362)
T ss_pred             EEEEeCCCceEeccCCCcccccccchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCCcCCCcCCHHH
Confidence            9988754 46678888999999999999999999999999999       999999999999999776665554567888


Q ss_pred             HHHHHhc
Q 029908          162 ALALLKR  168 (185)
Q Consensus       162 i~~~~~~  168 (185)
                      ++++++.
T Consensus       355 ~~~~~~~  361 (362)
T PRK09954        355 ALSLVPM  361 (362)
T ss_pred             HHHHhcc
Confidence            8887753

>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]

Probab=99.91  E-value=6.2e-24  Score=171.05  Aligned_cols=162  Identities=61%  Similarity=0.992  Sum_probs=141.0

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.+++.|.-+.+||+.+.++|++....+..+..++..+|++.++.+|++.+++......   .+|++.+.+.||||.|++
T Consensus       164 ~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~~~~~~---~~L~~~~~k~viVTlG~k  240 (330)
T KOG2855|consen  164 KVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGIEDDKI---LKLWHMKLKLVIVTLGEK  240 (330)
T ss_pred             hhhhcccccccCCCCccccccccccccHHHHHHHhhhhhcccccHHHHHHhccCccchH---HHHhccCCCEEEEEeCCC
Confidence            35667788888899999999997655555588899999999999999999998843322   488888889999999999


Q ss_pred             ceEEEEcCcee-EecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHH
Q 029908           82 GCRYYTKSFKG-AVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTES  160 (185)
Q Consensus        82 G~~~~~~~~~~-~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~  160 (185)
                      |+.+++.+..- ++|+.+++++|||||||+|+|||+.+|.+| +-. ++.++++++++|+++++..++++|.++.+|.++
T Consensus       241 G~~y~tk~~~~~~v~~~~V~~VDtTGAGDsFvgal~~~L~~~-~~~-~~~~L~~~l~~A~a~~ai~v~~~Ga~~s~p~~~  318 (330)
T KOG2855|consen  241 GCRYYTKDFKGSHVPAFKVKAVDTTGAGDSFVGALAVQLVRG-SLL-PELSLEEALRFANACGAITVQRKGAIPSMPTEK  318 (330)
T ss_pred             ceEEEecCCCCCCCCCcccccccCCCchHHHHHHHHHHHhhc-ccc-chHHHHHHHHHHHHhhhHHhhccCCCccCccHH
Confidence            99999987555 999999999999999999999999999999 423 377799999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 029908          161 EALALLKR  168 (185)
Q Consensus       161 ~i~~~~~~  168 (185)
                      ++...+..
T Consensus       319 ~~~~~~~~  326 (330)
T KOG2855|consen  319 EVQSLLKS  326 (330)
T ss_pred             HHHHHhhh
Confidence            99887764

>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases

Probab=99.91  E-value=7.6e-24  Score=171.05  Aligned_cols=124  Identities=42%  Similarity=0.575  Sum_probs=111.9

Q ss_pred             HHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHH----HhcCCCCcEEEEEcCCCceEEEEcCceeEecC-cccccc
Q 029908           28 AREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL----SLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDA-FRVKTV  102 (185)
Q Consensus        28 ~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~----~l~~~g~~~vvit~G~~G~~~~~~~~~~~~~~-~~~~~~  102 (185)
                      ..+.+.++++++|++++|++|+..+.+....+.+++.    +++..|++.+++|+|.+|++++++++.+++++ ++.+++
T Consensus       172 ~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vv  251 (301)
T PF00294_consen  172 LREDLKELLPYADILKPNEEEAEALTGSKIDDPEDALAALRELQARGVKIVIVTLGEDGALYYTNDESYHVPPVPPVNVV  251 (301)
T ss_dssp             HHHHHHHHHHTSSEEEEEHHHHHHHHTCSTSSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEEESSSSSS
T ss_pred             cchhhhhhccccchhccccccccccccccccchhhhhccccccchhhhhhhhccccccCccccccccccccccccccccc
Confidence            6788889999999999999999999999865555544    44458999999999999999999999999988 567999


Q ss_pred             cCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCC
Q 029908          103 DTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPT  158 (185)
Q Consensus       103 d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~  158 (185)
                      |++||||+|+|||+++++++.+       +++|+++|+++|+.++++.|+...+|+
T Consensus       252 dttGAGD~f~A~~i~~l~~~~~-------~~~a~~~a~~~aa~~v~~~g~~~~~p~  300 (301)
T PF00294_consen  252 DTTGAGDAFAAGFIYGLLSGMS-------LEEALKFANAAAALKVQQPGPRSPLPT  300 (301)
T ss_dssp             SCTTHHHHHHHHHHHHHHTTHH-------HHHHHHHHHHHHHHHHTSSSSSGGTT-
T ss_pred             ceeccchhhhHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhCCCCCcCCCCC
Confidence            9999999999999999999999       999999999999999999999988876

The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....

>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases

Probab=99.90  E-value=5.5e-23  Score=165.86  Aligned_cols=132  Identities=30%  Similarity=0.359  Sum_probs=112.7

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhh-ccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCcEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIW-DKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLKLLLV   76 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l-~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~~vvi   76 (185)
                      +.+++.++++++||+.+        ..    .+.+ +++|++++|+.|++.+++....+.++.    ..+.+.+++.|++
T Consensus       152 ~~~~~~~~~i~~D~~~~--------~~----~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~viv  219 (289)
T cd01164         152 RLAREKGARVILDTSGE--------AL----LAALAAKPFLIKPNREELEELFGRPLGDEEDVIAAARKLIERGAENVLV  219 (289)
T ss_pred             HHHHHcCCeEEEECChH--------HH----HHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            46778899999999741        12    2333 799999999999999998754433322    2566789999999


Q ss_pred             EcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCC
Q 029908           77 TLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGA  152 (185)
Q Consensus        77 t~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~  152 (185)
                      |.|.+|++++.+++.+++++++++++|++||||+|+|+|++++++|++       +++|+++|+++|+.++++.|+
T Consensus       220 t~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~-------~~~a~~~A~~~Aa~~~~~~G~  288 (289)
T cd01164         220 SLGADGALLVTKDGVYRASPPKVKVVSTVGAGDSMVAGFVAGLAQGLS-------LEEALRLAVAAGSATAFSPGT  288 (289)
T ss_pred             ecCCCCCEEEcCCcEEEecCCCccccCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCccC
Confidence            999999999988888899999999999999999999999999999999       999999999999999999885

FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.

>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like

Probab=99.90  E-value=5.3e-23  Score=163.78  Aligned_cols=131  Identities=26%  Similarity=0.346  Sum_probs=110.4

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCH-HHHHHhcCCCCcEEEEEcCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD-ESALSLWHPNLKLLLVTLGE   80 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~-~~~~~l~~~g~~~vvit~G~   80 (185)
                      +.++++|++|++||+.+   |.     .+.+.++++++|++++|++|...      .+. +.++++++.+++.||+|+|+
T Consensus       132 ~~a~~~g~~v~~D~~~~---~~-----~~~~~~~~~~~d~~~~~~~~~~~------~~~~~~~~~l~~~~~~~vvvT~G~  197 (264)
T cd01940         132 QALVGAGALISFDFSDR---WD-----DDYLQLVCPYVDFAFFSASDLSD------EEVKAKLKEAVSRGAKLVIVTRGE  197 (264)
T ss_pred             HHHHHcCCEEEEcCccc---CC-----HHHHHhhcccCCEEEechhhcCc------chHHHHHHHHHHcCCCEEEEEECC
Confidence            56888999999999865   22     23466788999999999876521      122 23346667899999999999


Q ss_pred             CceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCC
Q 029908           81 HGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGA  152 (185)
Q Consensus        81 ~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~  152 (185)
                      +|++++++++.+++|+++++++|++||||+|+|||++++++|++      ++++|+++|+++|+.++++.|+
T Consensus       198 ~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~------~~~~al~~a~~~aa~~~~~~G~  263 (264)
T cd01940         198 DGAIAYDGAVFYSVAPRPVEVVDTLGAGDSFIAGFLLSLLAGGT------AIAEAMRQGAQFAAKTCGHEGA  263 (264)
T ss_pred             CCeEEEeCCeEEecCCcCCCCCCCCCchHHHHHHHHHHHHhCCc------hHHHHHHHHHHHHHHHhcccCC
Confidence            99999998888899999999999999999999999999999974      2899999999999999999986

Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.

>PLN02548 adenosine kinase

Probab=99.90  E-value=7.7e-23  Score=168.22  Aligned_cols=142  Identities=20%  Similarity=0.266  Sum_probs=114.0

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCC---CCHHHH-HHhcC------CCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDK---IDDESA-LSLWH------PNL   71 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~---~~~~~~-~~l~~------~g~   71 (185)
                      +.++++|.++.+|+..  ++|.  +...+.+.++++++|++++|++|+..+++...   .+.+.+ .++..      .++
T Consensus       171 ~~a~~~g~~~~~~~~~--~~~~--~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~~~~~g~~~  246 (332)
T PLN02548        171 EHAAANNKTFMMNLSA--PFIC--EFFKDQLMEALPYVDFLFGNETEARTFAKVQGWETEDVEEIALKISALPKASGTHK  246 (332)
T ss_pred             HHHHHcCCEEEEECCC--hhHH--HHhHHHHHHHHhhCCEEEecHHHHHHHhCccCCCcccHHHHHHHHHHhhhhccccC
Confidence            4678889888887752  3332  23456688999999999999999999987533   222222 22221      268


Q ss_pred             cEEEEEcCCCceEEEEcCceeEecCc---ccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhh
Q 029908           72 KLLLVTLGEHGCRYYTKSFKGAVDAF---RVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTT  148 (185)
Q Consensus        72 ~~vvit~G~~G~~~~~~~~~~~~~~~---~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~  148 (185)
                      +.||+|+|++|++++++++.+++|++   +++++|++||||+|+|||+++|++|++       +++|+++|+++|+++|+
T Consensus       247 ~~vvvT~G~~G~~~~~~~~~~~~pa~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~-------l~eal~~a~aaAa~~v~  319 (332)
T PLN02548        247 RTVVITQGADPTVVAEDGKVKEFPVIPLPKEKLVDTNGAGDAFVGGFLSQLVQGKD-------IEECVRAGNYAANVIIQ  319 (332)
T ss_pred             CEEEEEeCCCcEEEEECCeEEEeccccCCcCccccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHh
Confidence            89999999999999998888888763   347899999999999999999999999       99999999999999999


Q ss_pred             ccCCCC
Q 029908          149 KKGAIP  154 (185)
Q Consensus       149 ~~g~~~  154 (185)
                      +.|+..
T Consensus       320 ~~G~~~  325 (332)
T PLN02548        320 RSGCTY  325 (332)
T ss_pred             ccCCCC
Confidence            999874

>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases

Probab=99.90  E-value=5.5e-23  Score=163.89  Aligned_cols=127  Identities=24%  Similarity=0.368  Sum_probs=110.1

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +++++++ .+++|++.+...        +.+.++++++|++++|++|+..+.+        .+.+.+.+++.|++|+|++
T Consensus       138 ~~a~~~~-~~~~d~~~~~~~--------~~~~~~~~~~d~~~~n~~e~~~l~~--------~~~~~~~~~~~viit~G~~  200 (265)
T cd01947         138 RKCRETK-LVILQVTPRVRV--------DELNQALIPLDILIGSRLDPGELVV--------AEKIAGPFPRYLIVTEGEL  200 (265)
T ss_pred             HHHHHhC-CeEeccCccccc--------hhHHHHhhhCCEEEeCHHHHHHhhh--------HHHHHhccCCEEEEEeCCC
Confidence            4566665 578898765321        3457788999999999999998864        2345567999999999999


Q ss_pred             ceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCC
Q 029908           82 GCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGA  152 (185)
Q Consensus        82 G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~  152 (185)
                      |+.++++++.+++|+++++++|++||||+|+|||++++++|++       +++|+++|+++|+.++++.|+
T Consensus       201 Ga~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~-------~~~al~~a~~~Aa~~v~~~G~  264 (265)
T cd01947         201 GAILYPGGRYNHVPAKKAKVPDSTGAGDSFAAGFIYGLLKGWS-------IEEALELGAQCGAICVSHFGP  264 (265)
T ss_pred             CeEEEECCeeEECCCCCCCCCCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccCC
Confidence            9999998888899999999999999999999999999999999       999999999999999999985

Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.

>PLN02630 pfkB-type carbohydrate kinase family protein

Probab=99.90  E-value=1e-22  Score=167.77  Aligned_cols=143  Identities=23%  Similarity=0.308  Sum_probs=119.8

Q ss_pred             cCCeEEEcCCCC-CCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCCceEE
Q 029908            7 AGALLSYDPNLR-LPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRY   85 (185)
Q Consensus         7 ~g~~v~~D~~~~-~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~   85 (185)
                      +|+.+++||++. ..+|...   ...+.++++++|++++|++|+..+      +.+.+.   +  ...|++|+|++|+++
T Consensus       152 ~g~~~~~Dp~~~~~~~~~~~---~~~~~~~L~~iDil~~ne~Ea~~l------~~~~~~---~--~~~vvvt~G~~G~~~  217 (335)
T PLN02630        152 QALIRVFDPVDGTVKLVKLE---ETGFYDMLPRIGFLKASSEEALFI------DVEEVR---Q--KCCVIVTNGKKGCRI  217 (335)
T ss_pred             CceEEecCCcccccccchhh---HHHHHHHHHhCCEEEecHHHHhhc------CHHHHc---c--CCEEEEEECCCceEE
Confidence            688999999863 4555311   123678899999999999999987      122221   1  238999999999999


Q ss_pred             EEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHHHHHHH
Q 029908           86 YTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALAL  165 (185)
Q Consensus        86 ~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~~i~~~  165 (185)
                      +++++.+++|+++++++|+|||||+|+|||++++++|.+       +.+|+++|+++|+.++++.|..  ..+++++++.
T Consensus       218 ~~~~~~~~~~~~~v~~vDttGAGDaF~agfi~~l~~g~~-------~~~a~~~A~a~aa~~v~~~G~~--~~~~~~l~~~  288 (335)
T PLN02630        218 YWKDGEMRVPPFPAIQVDPTGAGDSFLGGFVAGLVQGLA-------VPDAALLGNYFGSLAVEQVGIP--KFDLRQLQRV  288 (335)
T ss_pred             EECCeeEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhCcCCCC--CCCHHHHHHH
Confidence            998888899999999999999999999999999999999       9999999999999999999953  3599999999


Q ss_pred             HhcCcch
Q 029908          166 LKRSTII  172 (185)
Q Consensus       166 ~~~~~~~  172 (185)
                      ++++.+.
T Consensus       289 ~~~i~i~  295 (335)
T PLN02630        289 KDEVQRR  295 (335)
T ss_pred             hhcEEEE
Confidence            9988764

>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

Probab=99.89  E-value=1.7e-22  Score=173.62  Aligned_cols=145  Identities=25%  Similarity=0.279  Sum_probs=121.7

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHH---HHHHhc-CCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE---SALSLW-HPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~---~~~~l~-~~g~~~vvit   77 (185)
                      +.++++|++|++||+...             ...++++|++++|.+|++.+++......+   .+.+++ +.|++.|+||
T Consensus       165 ~~~k~~g~~vv~Dp~~~~-------------~~~~~~~dil~pN~~Ea~~l~g~~~~~~~~~~~~~~l~~~~g~~~vvVT  231 (473)
T PRK11316        165 QLARKAGVPVLIDPKGTD-------------FERYRGATLLTPNLSEFEAVVGKCKDEAELVEKGMKLIADYDLSALLVT  231 (473)
T ss_pred             HHHHhcCCeEEEeCCCCC-------------ccccCCCeEECcCHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            567889999999997431             13457899999999999999985332211   223443 5799999999


Q ss_pred             cCCCceEEEEcCc-eeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCC
Q 029908           78 LGEHGCRYYTKSF-KGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPAL  156 (185)
Q Consensus        78 ~G~~G~~~~~~~~-~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~  156 (185)
                      .|.+|+.++++++ .+++|+++++++|++||||+|.|||+++|++|.+       +++|+++|+++|+.++++.|+.+  
T Consensus       232 ~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~aa~~~~l~~g~~-------~~~al~~A~a~Aa~~v~~~G~~~--  302 (473)
T PRK11316        232 RSEQGMTLLQPGKAPLHLPTQAREVYDVTGAGDTVISVLAAALAAGNS-------LEEACALANAAAGVVVGKLGTST--  302 (473)
T ss_pred             ecCCCcEEEecCCceEEecCcCCCCCCCCCCcHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhhcccCCCcc--
Confidence            9999998888765 5889999999999999999999999999999999       99999999999999999999864  


Q ss_pred             CCHHHHHHHHhc
Q 029908          157 PTESEALALLKR  168 (185)
Q Consensus       157 ~~~~~i~~~~~~  168 (185)
                      ++.+++++++..
T Consensus       303 ~~~~~l~~~l~~  314 (473)
T PRK11316        303 VSPIELENALRG  314 (473)
T ss_pred             CCHHHHHHHHhc
Confidence            689999998884

>PRK09813 fructoselysine 6-kinase; Provisional

Probab=99.89  E-value=1e-22  Score=162.10  Aligned_cols=129  Identities=22%  Similarity=0.256  Sum_probs=108.6

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCH-HHHHHhcCCCCcEEEEEcCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD-ESALSLWHPNLKLLLVTLGE   80 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~-~~~~~l~~~g~~~vvit~G~   80 (185)
                      +.++++|+++++||+.+.   .     .+.+.++++++|++++|..+..       .+. +.++++.+.|++.++||+|+
T Consensus       130 ~~~~~~~~~v~~D~~~~~---~-----~~~~~~~~~~~d~~~~~~~~~~-------~~~~~~~~~~~~~g~~~viit~G~  194 (260)
T PRK09813        130 PQLHAAGKLTAFDFSDKW---D-----SPLWQTLVPHLDYAFASAPQED-------EFLRLKMKAIVARGAGVVIVTLGE  194 (260)
T ss_pred             HHHHHcCCeEEEEcCCCc---c-----HHHHHHhCCceeEEEecCCcch-------HHHHHHHHHHHHcCCCEEEEEECC
Confidence            567889999999998642   1     2345678999999998865311       111 22335667899999999999


Q ss_pred             CceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCC
Q 029908           81 HGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGA  152 (185)
Q Consensus        81 ~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~  152 (185)
                      +|++++++++.+++|+++++++|++||||+|+|||++++++|++       +++|+++|+++|+.++++.|+
T Consensus       195 ~Ga~~~~~~~~~~~~~~~~~~vDttGAGDaF~ag~i~~~~~g~~-------~~~al~~a~~~aa~~~~~~G~  259 (260)
T PRK09813        195 NGSIAWDGAQFWRQAPEPVTVVDTMGAGDSFIAGFLCGWLAGMT-------LPQAMAQGTACAAKTIQYHGA  259 (260)
T ss_pred             CceEEEECCEEEecCCcccCCCCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccCC
Confidence            99999998888999999999999999999999999999999999       999999999999999999985

>cd01946 ribokinase_group_C Ribokinase-like subgroup C

Probab=99.89  E-value=1.7e-22  Score=162.13  Aligned_cols=143  Identities=23%  Similarity=0.387  Sum_probs=115.8

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.++++ .+|++||.   ..|.  ....+.+.++++++|++++|++|+..+++.... .+..+.+.+.|++.|++|+|.+
T Consensus       133 ~~~~~~-~~v~~D~~---~~~~--~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~-~~~~~~l~~~g~~~vvvt~G~~  205 (277)
T cd01946         133 EQVKDP-KLVVMDTM---NFWI--SIKPEKLKKVLAKVDVVIINDGEARQLTGAANL-VKAARLILAMGPKALIIKRGEY  205 (277)
T ss_pred             HHHHhC-CEEEEccH---HHhh--hhhHHHHHHHhccCCEEeCCHHHHHHHhCCchH-HHHHHHHHHcCCCEEEEecCCC
Confidence            345666 88999983   2353  233566788999999999999999999885422 1233466778999999999999


Q ss_pred             ceEEEEcCceeEecCcccc-cccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCC
Q 029908           82 GCRYYTKSFKGAVDAFRVK-TVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAI  153 (185)
Q Consensus        82 G~~~~~~~~~~~~~~~~~~-~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~  153 (185)
                      |++++++++.+++|+++++ ++|++||||+|+|||+++|+++++  ..++++++|+++|+++|+.+|++.|+.
T Consensus       206 G~~~~~~~~~~~~~~~~~~~~vDttGAGDaF~Agfl~~l~~~~~--~~~~~~~~a~~~a~~~aa~~~~~~G~~  276 (277)
T cd01946         206 GALLFTDDGYFAAPAYPLESVFDPTGAGDTFAGGFIGYLASQKD--TSEANMRRAIIYGSAMASFCVEDFGTK  276 (277)
T ss_pred             cEEEEECCceEEcCCcccCccCCCCCchHHHHHHHHHHHHhCCC--cchhhHHHHHHHhHHHHhhhhhhcCCC
Confidence            9999998888889998875 889999999999999999998753  123448999999999999999999964

Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.

>cd01941 YeiC_kinase_like YeiC-like sugar kinase

Probab=99.89  E-value=2.2e-22  Score=161.96  Aligned_cols=132  Identities=28%  Similarity=0.425  Sum_probs=108.4

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHH----HHHHhcCCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE----SALSLWHPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~----~~~~l~~~g~~~vvit   77 (185)
                      +.+++++.++++||+..       +...+. .++++++|++++|++|+..+++....+..    ..+.+...+++.|++|
T Consensus       148 ~~a~~~~~~v~~d~~~~-------~~~~~~-~~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvit  219 (288)
T cd01941         148 ALAAKHGVPVAFEPTSA-------PKLKKL-FYLLHAIDLLTPNRAELEALAGALIENNEDENKAAKILLLPGIKNVIVT  219 (288)
T ss_pred             HhhhhcCCcEEEEccch-------HHhccc-hhhcccceEEeCCHHHHHHHhCcccCCchhHHHHHHHHHHcCCcEEEEE
Confidence            45778899999999742       112221 26889999999999999999887543211    1235556899999999


Q ss_pred             cCCCceEEEEc---CceeEecC-cccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhh
Q 029908           78 LGEHGCRYYTK---SFKGAVDA-FRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTT  148 (185)
Q Consensus        78 ~G~~G~~~~~~---~~~~~~~~-~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~  148 (185)
                      +|++|++++++   +..+++|+ ++.+++|++||||+|+|+|+++|++|++       +++|+++|+++|+.+|+
T Consensus       220 ~G~~Ga~~~~~~~~~~~~~~~~~~~~~~vDttGAGDaf~a~~~~~l~~g~~-------~~~al~~a~~~Aa~~~~  287 (288)
T cd01941         220 LGAKGVLLSSREGGVETKLFPAPQPETVVNVTGAGDAFVAGLVAGLLEGMS-------LDDSLRFAQAAAALTLE  287 (288)
T ss_pred             eCCCcEEEEecCCCceeEEecCCCCccceeCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhc
Confidence            99999999987   56688888 5789999999999999999999999999       99999999999999986

Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.

>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP

Probab=99.87  E-value=2.7e-21  Score=153.57  Aligned_cols=141  Identities=27%  Similarity=0.223  Sum_probs=112.8

Q ss_pred             hHHHHc--CCeEEEcCCCCC--CCCCChHHHHHHHHHhhc-cccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCc
Q 029908            2 KAAKEA--GALLSYDPNLRL--PLWPSPEEAREQIMSIWD-KAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLK   72 (185)
Q Consensus         2 ~~a~~~--g~~v~~D~~~~~--~~~~~~~~~~~~~~~~l~-~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~   72 (185)
                      +.++++  |++|++||+.+.  .+|...+...+.+.++++ ++|+++||..|++.|++.+..+.+++    +++.+.|++
T Consensus        95 ~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~  174 (254)
T cd01173          95 KRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELELLTGKKINDLEDAKAAARALHAKGPK  174 (254)
T ss_pred             HHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHHHcCCCcCCHHHHHHHHHHHHHhCCC
Confidence            455665  899999998643  455434566777777777 99999999999999999865443332    366678999


Q ss_pred             EEEEEcCCC------ceEEEEcCceeEecCcccc-cccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHH
Q 029908           73 LLLVTLGEH------GCRYYTKSFKGAVDAFRVK-TVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGAL  145 (185)
Q Consensus        73 ~vvit~G~~------G~~~~~~~~~~~~~~~~~~-~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~  145 (185)
                      .|++|.|..      |++++++++.++++.++.+ ++|++|+||+|+|+|+++|++|.+       +++++++|++....
T Consensus       175 ~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~~~~~l~~g~~-------~~~a~~~A~~~~~~  247 (254)
T cd01173         175 TVVVTSVELADDDRIEMLGSTATEAWLVQRPKIPFPAYFNGTGDLFAALLLARLLKGKS-------LAEALEKALNFVHE  247 (254)
T ss_pred             EEEEEeeccCCCCcEEEEEEecCccEEEEeeccCCCCCcCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHH
Confidence            999999974      7887777665666666566 699999999999999999999999       99999999999887


Q ss_pred             Hhhc
Q 029908          146 STTK  149 (185)
Q Consensus       146 ~~~~  149 (185)
                      .++.
T Consensus       248 ~i~~  251 (254)
T cd01173         248 VLEA  251 (254)
T ss_pred             HHHH
Confidence            7654

Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.

>cd01937 ribokinase_group_D Ribokinase-like subgroup D

Probab=99.87  E-value=1.9e-21  Score=154.08  Aligned_cols=129  Identities=28%  Similarity=0.297  Sum_probs=105.9

Q ss_pred             HcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCCceEE
Q 029908            6 EAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRY   85 (185)
Q Consensus         6 ~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~   85 (185)
                      +..++|++||+.....|..   ....+.++++++|++++|++|+..+   . ...+..+++...|++.|++|.|.+|+.+
T Consensus       126 ~~~~~v~~D~~~~~~~~~~---~~~~~~~~l~~~di~~~n~~E~~~~---~-~~~~~~~~l~~~g~~~vvvt~g~~g~~~  198 (254)
T cd01937         126 RKFAFISLDAQGFLRRANQ---EKLIKCVILKLHDVLKLSRVEAEVI---S-TPTELARLIKETGVKEIIVTDGEEGGYI  198 (254)
T ss_pred             hhhhheeEccccceeeccc---cchHHHhhcccCcEEEEcHHHHhhc---C-CHHHHHHHHHHcCCCEEEEeeCCcceEE
Confidence            3447899999864323321   1223678999999999999999983   1 1122334566789999999999999999


Q ss_pred             EEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhh
Q 029908           86 YTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTT  148 (185)
Q Consensus        86 ~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~  148 (185)
                      +++++.+++|+++++++|++||||+|+|+|++++++|.+       +++|+++|+++|+.+++
T Consensus       199 ~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~-------~~~a~~~a~~~aa~~i~  254 (254)
T cd01937         199 FDGNGKYTIPASKKDVVDPTGAGDVFLAAFLYSRLSGKD-------IKEAAEFAAAAAAKFIE  254 (254)
T ss_pred             EECCccEEccccCceeccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhC
Confidence            998888899999999999999999999999999999999       99999999999999875

Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.

>PRK12413 phosphomethylpyrimidine kinase; Provisional

Probab=99.87  E-value=3.6e-21  Score=152.83  Aligned_cols=138  Identities=19%  Similarity=0.206  Sum_probs=111.4

Q ss_pred             HcCCeEEEcCCCCCCCCC--ChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCcEEEEEcC
Q 029908            6 EAGALLSYDPNLRLPLWP--SPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLKLLLVTLG   79 (185)
Q Consensus         6 ~~g~~v~~D~~~~~~~~~--~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~~vvit~G   79 (185)
                      +++++|++||++++..|.  +.+...+.+.++++++|+++||+.|++.|+|.+..+.+++    +++.+.|++.|++|.|
T Consensus        95 ~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~g~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g  174 (253)
T PRK12413         95 HPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLSGKEIKTLEDMKEAAKKLYDLGAKAVVIKGG  174 (253)
T ss_pred             CCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHhCcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            468999999999998884  3556677777889999999999999999999765544332    3566789999999999


Q ss_pred             CCce-----EEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhcc
Q 029908           80 EHGC-----RYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKK  150 (185)
Q Consensus        80 ~~G~-----~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~  150 (185)
                      ..|.     .++..++..+.+.++...+|++||||+|+|+|+++|++|.+       +++|+++|.++....+++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGDaf~a~~~~~l~~g~~-------l~ea~~~A~~~~~~~l~~~  243 (253)
T PRK12413        175 NRLSQKKAIDLFYDGKEFVILESPVLEKNNIGAGCTFASSIASQLVKGKS-------PLEAVKNSKDFVYQAIQQS  243 (253)
T ss_pred             CCCCCCcceEEEEcCCEEEEEeecccCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHH
Confidence            8642     23333344455566677789999999999999999999999       9999999999988888764

>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose

Probab=99.87  E-value=1.3e-21  Score=157.96  Aligned_cols=124  Identities=25%  Similarity=0.293  Sum_probs=100.5

Q ss_pred             CeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHH---HhcCCCCcEEEEEcCCCceEE
Q 029908            9 ALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL---SLWHPNLKLLLVTLGEHGCRY   85 (185)
Q Consensus         9 ~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~---~l~~~g~~~vvit~G~~G~~~   85 (185)
                      +++++|++..          .+.+.++++++|++++|++|+..+ +...  .++..   .+...+++.||+|+|++|+.+
T Consensus       160 ~~v~~d~~~~----------~~~~~~~l~~~di~~~n~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~vvvt~G~~G~~~  226 (290)
T cd01939         160 ITISVEVEKP----------REELLELAAYCDVVFVSKDWAQSR-GYKS--PEECLRGEGPRAKKAALLVCTWGDQGAGA  226 (290)
T ss_pred             eEEEEEeccC----------chhhhhHHhhCCEEEEEhHHHHhc-CcCC--HHHHHHhhhhhccCCcEEEEEcccCCeEE
Confidence            6899998742          123458899999999999988765 4332  22222   222468899999999999999


Q ss_pred             EEc-CceeEecCccc-ccccCCCcchHHHHHHHHHHHccC-CCCCChHHHHHHHHHHHHHhHHHhhccCC
Q 029908           86 YTK-SFKGAVDAFRV-KTVDTTGAGDAFVGALLCKIVDDQ-SAIEDEPRLREILKFANACGALSTTKKGA  152 (185)
Q Consensus        86 ~~~-~~~~~~~~~~~-~~~d~~GaGDaf~A~~~~~l~~g~-~~~~~~~~~~~a~~~a~~~aa~~~~~~g~  152 (185)
                      +++ +..+++|+++. +++||+||||+|+|||++++++|+ +       +++|+++|+++|++++++.|.
T Consensus       227 ~~~~~~~~~~~~~~~~~vvDt~GAGDsf~agfl~~l~~g~~~-------~~~a~~~a~a~aa~~i~~~G~  289 (290)
T cd01939         227 LGPDGEYVHSPAHKPIRVVDTLGAGDTFNAAVIYALNKGPDD-------LSEALDFGNRVASQKCTGVGF  289 (290)
T ss_pred             EcCCCCEEEecCCCCCCcccCCCchHHHHHHHHHHHHcCCcc-------HHHHHHHHHHHHHHHHhhhcC
Confidence            886 45778898765 699999999999999999999999 7       999999999999999999874

KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.

>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase

Probab=99.86  E-value=2.2e-20  Score=148.59  Aligned_cols=141  Identities=21%  Similarity=0.177  Sum_probs=112.2

Q ss_pred             hHHHHcCC-eEEEcCCCCCC----CCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHH----HHHhcCCCCc
Q 029908            2 KAAKEAGA-LLSYDPNLRLP----LWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDES----ALSLWHPNLK   72 (185)
Q Consensus         2 ~~a~~~g~-~v~~D~~~~~~----~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~----~~~l~~~g~~   72 (185)
                      +.+++++. +|++||..+..    ++. .+.......++++++|+++||..|++.|++....+.++    ++++.+.|++
T Consensus        87 ~~~~~~~~~~vVlDPv~~~~~g~~l~~-~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~~~~~a~~l~~~g~~  165 (254)
T TIGR00097        87 RKLREYPVRPLVVDPVMVAKSGAPLLE-EEAIEALRKRLLPLATLITPNLPEAEALLGTKIRTEQDMIKAAKKLRELGPK  165 (254)
T ss_pred             HHHHhcCCCcEEECCccccCCCCcCCC-HHHHHHHHHhccccccEecCCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC
Confidence            45677788 79999987542    332 23333344568899999999999999999876443322    2366678999


Q ss_pred             EEEEEcCCC----ce-EEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHh
Q 029908           73 LLLVTLGEH----GC-RYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALST  147 (185)
Q Consensus        73 ~vvit~G~~----G~-~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~  147 (185)
                      .|++|.|+.    |. +++++++.++++.++++.+|++|+||+|.|+|+++|++|++       +++|+++|++++...+
T Consensus       166 ~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~aalaa~la~g~~-------l~eA~~~A~~~~~~~i  238 (254)
T TIGR00097       166 AVLIKGGHLEGDQAVDVLFDGGEIHILKAPRIETKNTHGTGCTLSAAIAANLAKGLS-------LKEAVKEAKEFVTGAI  238 (254)
T ss_pred             EEEEeCCCCCCCceeEEEEECCeEEEEEecccCCCCCCChHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHH
Confidence            999999973    43 56777777788888889999999999999999999999999       9999999999999998


Q ss_pred             hcc
Q 029908          148 TKK  150 (185)
Q Consensus       148 ~~~  150 (185)
                      ++.
T Consensus       239 ~~~  241 (254)
T TIGR00097       239 RYG  241 (254)
T ss_pred             HHh
Confidence            763

This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.

>PRK05756 pyridoxamine kinase; Validated

Probab=99.85  E-value=1.8e-20  Score=151.45  Aligned_cols=140  Identities=24%  Similarity=0.189  Sum_probs=111.3

Q ss_pred             HHHHcC--CeEEEcCCCCCC---CCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCcE
Q 029908            3 AAKEAG--ALLSYDPNLRLP---LWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLKL   73 (185)
Q Consensus         3 ~a~~~g--~~v~~D~~~~~~---~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~~   73 (185)
                      .+++.+  +.+++||+.+..   .|...+.......++++++|+++||..|++.|++.+..+.+++    +++.+.|++.
T Consensus        98 ~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L~g~~~~~~~~~~~~~~~l~~~g~~~  177 (286)
T PRK05756         98 RVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELEWLSGRPVETLEDAVAAARALIARGPKI  177 (286)
T ss_pred             HHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHHHHhCCCcCCHHHHHHHHHHHHHhCCCE
Confidence            445454  568999998773   4543333344445699999999999999999998765443333    2566789999


Q ss_pred             EEEEcCCC--------ceEEEEcCceeEecCccccc-ccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhH
Q 029908           74 LLVTLGEH--------GCRYYTKSFKGAVDAFRVKT-VDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGA  144 (185)
Q Consensus        74 vvit~G~~--------G~~~~~~~~~~~~~~~~~~~-~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa  144 (185)
                      |+||.|..        |++++++++.++++.++++. +|++||||+|+|+|++++++|.+       +++|+++|++...
T Consensus       178 Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~GaGD~f~a~~~a~l~~g~~-------~~~al~~A~~~~~  250 (286)
T PRK05756        178 VLVTSLARAGYPADRFEMLLVTADGAWHISRPLVDFMRQPVGVGDLTSALFLARLLQGGS-------LEEALEHTTAAVY  250 (286)
T ss_pred             EEEeccccCCCCCCcEEEEEEECCceEEEecCccCCCCCCCChHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHH
Confidence            99999876        47777777777788777777 79999999999999999999999       9999999999998


Q ss_pred             HHhhc
Q 029908          145 LSTTK  149 (185)
Q Consensus       145 ~~~~~  149 (185)
                      ..++.
T Consensus       251 ~~i~~  255 (286)
T PRK05756        251 EVMAR  255 (286)
T ss_pred             HHHHH
Confidence            88865

>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1

Probab=99.85  E-value=5.8e-20  Score=144.78  Aligned_cols=140  Identities=20%  Similarity=0.162  Sum_probs=110.8

Q ss_pred             HHHHc-CCeEEEcCCCCCCCCC---ChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHH----HHHhcCCCCcEE
Q 029908            3 AAKEA-GALLSYDPNLRLPLWP---SPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDES----ALSLWHPNLKLL   74 (185)
Q Consensus         3 ~a~~~-g~~v~~D~~~~~~~~~---~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~----~~~l~~~g~~~v   74 (185)
                      .+++. ++++++||+.+...+.   ..+........+++++|+++||..|++.|++....+.++    ++++.+.|++.|
T Consensus        89 ~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~~~~~~~~l~~~g~~~V  168 (242)
T cd01169          89 ALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTGLEIATEEDMMKAAKALLALGAKAV  168 (242)
T ss_pred             HHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCEE
Confidence            44554 8999999988754332   123334445567899999999999999999976544322    235667899999


Q ss_pred             EEEcCCCc-----eEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhc
Q 029908           75 LVTLGEHG-----CRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTK  149 (185)
Q Consensus        75 vit~G~~G-----~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~  149 (185)
                      +||.|..|     .+++++++.++++.++.++++++|+||+|+|+|+++|++|.+       +.+|+++|+......+++
T Consensus       169 vit~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~a~l~~g~~-------~~~A~~~A~~~~~~~i~~  241 (242)
T cd01169         169 LIKGGHLPGDEAVDVLYDGGGFFEFESPRIDTKNTHGTGCTLSSAIAANLAKGLS-------LEEAVREAKEYVTQAIRN  241 (242)
T ss_pred             EEecCCCCCCceeEEEEECCcEEEEecceeCCCCCCChHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHc
Confidence            99999875     466777777888888888899999999999999999999999       999999999988776653

The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.

>PRK12412 pyridoxal kinase; Reviewed

Probab=99.85  E-value=4.5e-20  Score=147.93  Aligned_cols=141  Identities=17%  Similarity=0.139  Sum_probs=110.4

Q ss_pred             hHHHHcCCe-EEEcCCCCCCCCC---ChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCcE
Q 029908            2 KAAKEAGAL-LSYDPNLRLPLWP---SPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLKL   73 (185)
Q Consensus         2 ~~a~~~g~~-v~~D~~~~~~~~~---~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~~   73 (185)
                      +.+++.+.+ |++||........   .++.......++++++|+++||..|++.|++.+..+.+++    +++.+.|++.
T Consensus        92 ~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~~~~~~~~~~~aa~~l~~~g~~~  171 (268)
T PRK12412         92 ETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSGVKINSLEDMKEAAKKIHALGAKY  171 (268)
T ss_pred             HHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCCCE
Confidence            356667776 9999987543221   1222334455689999999999999999998765443332    3666789999


Q ss_pred             EEEEcCCCce------EEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHh
Q 029908           74 LLVTLGEHGC------RYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALST  147 (185)
Q Consensus        74 vvit~G~~G~------~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~  147 (185)
                      |+||.|..|+      +++.++..++++.++++.+|++|+||+|+|+|+++|++|.+       +++|+++|.++....+
T Consensus       172 ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~t~GaGD~f~aa~aa~l~~g~~-------l~eA~~~A~~~~~~~i  244 (268)
T PRK12412        172 VLIKGGSKLGTETAIDVLYDGETFDLLESEKIDTTNTHGAGCTYSAAITAELAKGKP-------VKEAVKTAKEFITAAI  244 (268)
T ss_pred             EEEeccCCCCCCceEEEEEeCCEEEEEEeCccCCCCCCchHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHH
Confidence            9999998753      44555555678888889999999999999999999999999       9999999999999888


Q ss_pred             hc
Q 029908          148 TK  149 (185)
Q Consensus       148 ~~  149 (185)
                      .+
T Consensus       245 ~~  246 (268)
T PRK12412        245 RY  246 (268)
T ss_pred             HH
Confidence            76

>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed

Probab=99.84  E-value=8.9e-20  Score=145.86  Aligned_cols=141  Identities=21%  Similarity=0.196  Sum_probs=110.6

Q ss_pred             hHHHHcCC-eEEEcCCCCCC----CCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHH-----HHHHhcCCCC
Q 029908            2 KAAKEAGA-LLSYDPNLRLP----LWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE-----SALSLWHPNL   71 (185)
Q Consensus         2 ~~a~~~g~-~v~~D~~~~~~----~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~-----~~~~l~~~g~   71 (185)
                      +.+++.+. ++++||+.+..    .|. .+.......++++++|+++||..|++.|++.+..+.+     .++++.+.|+
T Consensus        93 ~~~~~~~~~~vv~DPv~~~~~~~~~~~-~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~~~~~~a~~l~~~g~  171 (266)
T PRK06427         93 EALKRYPIPPVVLDPVMIAKSGDPLLA-DDAVAALRERLLPLATLITPNLPEAEALTGLPIADTEDEMKAAARALHALGC  171 (266)
T ss_pred             HHHHhCCCCCEEEcCccccCCCCcCCC-HHHHHHHHHhhhCcCeEEcCCHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCC
Confidence            34566665 89999987642    332 2333334446899999999999999999987543322     2236667899


Q ss_pred             cEEEEEcCC--Cce----EEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHH
Q 029908           72 KLLLVTLGE--HGC----RYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGAL  145 (185)
Q Consensus        72 ~~vvit~G~--~G~----~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~  145 (185)
                      +.|+||.|.  .|.    +++++++.++++.++.+.++++|+||+|+|+|++++++|.+       +.+|+++|+.++..
T Consensus       172 ~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~~~l~~g~~-------l~~A~~~A~~~~~~  244 (266)
T PRK06427        172 KAVLIKGGHLLDGEESVDWLFDGEGEERFSAPRIPTKNTHGTGCTLSAAIAAELAKGAS-------LLDAVQTAKDYVTR  244 (266)
T ss_pred             CEEEEcCCCCCCCCceeEEEEeCCcEEEEEeeeECCCCCCChHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHH
Confidence            999999998  553    66677767788888888889999999999999999999999       99999999999998


Q ss_pred             Hhhcc
Q 029908          146 STTKK  150 (185)
Q Consensus       146 ~~~~~  150 (185)
                      .+++.
T Consensus       245 ~i~~~  249 (266)
T PRK06427        245 AIRHA  249 (266)
T ss_pred             HHHHH
Confidence            88763

>PRK08573 phosphomethylpyrimidine kinase; Provisional

Probab=99.84  E-value=1.7e-19  Score=154.08  Aligned_cols=140  Identities=22%  Similarity=0.207  Sum_probs=112.4

Q ss_pred             hHHHHcCCeEEEcCCCCC----CCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhc-CCCCc
Q 029908            2 KAAKEAGALLSYDPNLRL----PLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLW-HPNLK   72 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~----~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~-~~g~~   72 (185)
                      +.++++|++|++||++++    .+|. .+.......++++++|+++||..|++.|+|....+.+++    +++. ..|++
T Consensus        91 ~~~k~~g~~vv~DPv~~~~sG~~l~~-~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~~d~~~aa~~L~~~~G~~  169 (448)
T PRK08573         91 KTVSKYGFPLVVDPVMIAKSGAPLLR-EDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVEDARKAAKYIVEELGAE  169 (448)
T ss_pred             HHHHHcCCCEEEcCccccCCCCcCCC-HHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCC
Confidence            567888999999998774    3453 333344456789999999999999999999765443333    2454 37999


Q ss_pred             EEEEEcCC----Cce-EEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHh
Q 029908           73 LLLVTLGE----HGC-RYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALST  147 (185)
Q Consensus        73 ~vvit~G~----~G~-~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~  147 (185)
                      .|++|.|.    .|+ +++.++..++++.++++++|++||||+|+|+|++++++|.+       +.+|+++|+.+....+
T Consensus       170 ~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~~v~~~dt~GAGDaFsAa~aa~l~~G~~-------l~eAl~~A~~~~~~al  242 (448)
T PRK08573        170 AVVVKGGHLEGEEAVDVLYHNGTFREFRAPRVESGCTHGTGCSFSAAIAAGLAKGLD-------PEEAIKTAKKFITMAI  242 (448)
T ss_pred             EEEEecccCCCCceeEEEEECCeEEEEEecCcCCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHH
Confidence            99999985    343 45566666788888889999999999999999999999999       9999999999998888


Q ss_pred             hc
Q 029908          148 TK  149 (185)
Q Consensus       148 ~~  149 (185)
                      ++
T Consensus       243 ~~  244 (448)
T PRK08573        243 KY  244 (448)
T ss_pred             HH
Confidence            83

>PRK07105 pyridoxamine kinase; Validated

Probab=99.84  E-value=7.4e-20  Score=147.75  Aligned_cols=141  Identities=21%  Similarity=0.233  Sum_probs=109.9

Q ss_pred             HHHcCCeEEEcCCCCC--CCCCC-hHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCC----CHHHH----HHhcCCCCc
Q 029908            4 AKEAGALLSYDPNLRL--PLWPS-PEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI----DDESA----LSLWHPNLK   72 (185)
Q Consensus         4 a~~~g~~v~~D~~~~~--~~~~~-~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~----~~~~~----~~l~~~g~~   72 (185)
                      +++.++++++||+.+.  .+|.. .+...+.+.++++++|+++||..|++.|++.+..    +.+++    +++.+.|++
T Consensus       100 ~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~~~~~~~~~~~~~~~~a~~l~~~g~~  179 (284)
T PRK07105        100 FKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLLDKPYLEKSYSEEEIKQLLRKLADLGPK  179 (284)
T ss_pred             hccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHcCCCcCcCCCCHHHHHHHHHHHHhcCCC
Confidence            3556899999998754  35642 3456667778999999999999999999987532    22222    356678999


Q ss_pred             EEEEEc-----CCCceEEEEcC--ceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHH
Q 029908           73 LLLVTL-----GEHGCRYYTKS--FKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGAL  145 (185)
Q Consensus        73 ~vvit~-----G~~G~~~~~~~--~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~  145 (185)
                      .|+||.     |..|+++++++  ..++.+.+..+ ++++|+||+|+|+|++++++|++       +++++++|++++..
T Consensus       180 ~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~-~~~~GaGD~f~aa~~~~l~~g~~-------l~~av~~A~~~~~~  251 (284)
T PRK07105        180 IVIITSVPFEDGKIGVAYYDRATDRFWKVFCKYIP-AHYPGTGDIFTSVITGSLLQGDS-------LPIALDRAVQFIEK  251 (284)
T ss_pred             EEEEcCeeeCCCeEEEEEEeCCCCeEEEEeecccC-CCcCChhHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHH
Confidence            999999     66788887643  34455554444 79999999999999999999999       99999999999998


Q ss_pred             HhhccCC
Q 029908          146 STTKKGA  152 (185)
Q Consensus       146 ~~~~~g~  152 (185)
                      .+.+...
T Consensus       252 ~i~~~~~  258 (284)
T PRK07105        252 GIRATLG  258 (284)
T ss_pred             HHHHHHh
Confidence            8876543

>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group

Probab=99.83  E-value=4.9e-20  Score=140.07  Aligned_cols=114  Identities=33%  Similarity=0.456  Sum_probs=95.4

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHH----HHHHhcCCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE----SALSLWHPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~----~~~~l~~~g~~~vvit   77 (185)
                      +.+++.|+++++||+.+...|..     +.+.++++++|++++|++|++.+++....+.+    ...++.+.+++.|++|
T Consensus        78 ~~~~~~~~~v~~D~~~~~~~~~~-----~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt  152 (196)
T cd00287          78 EEARRRGVPVVLDPGPRAVRLDG-----EELEKLLPGVDILTPNEEEAEALTGRRDLEVKEAAEAAALLLSKGPKVVIVT  152 (196)
T ss_pred             HHHHHcCCeEEEeCCcccccccc-----chHHHHHhhCCEECCCHHHHHHHhCCCCCChHHHHHHHHHHHhcCCCEEEEE
Confidence            56788899999999987655542     12677889999999999999999987665432    2336667899999999


Q ss_pred             cCCCceEEEE-cCceeEecCcccccccCCCcchHHHHHHHHHHH
Q 029908           78 LGEHGCRYYT-KSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV  120 (185)
Q Consensus        78 ~G~~G~~~~~-~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~  120 (185)
                      .|++|+.+++ ++..+++|+++.+++|++||||+|+|+|+++++
T Consensus       153 ~G~~g~~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~ag~~~~l~  196 (196)
T cd00287         153 LGEKGAIVATRGGTEVHVPAFPVKVVDTTGAGDAFLAALAAGLA  196 (196)
T ss_pred             ECCCccEEEecCCceEEcCCccCCcccCCCchHHHHHHHHHHhC
Confidence            9999999999 777888998888899999999999999999874

The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).

>TIGR00687 pyridox_kin pyridoxal kinase

Probab=99.83  E-value=1.6e-19  Score=145.98  Aligned_cols=138  Identities=25%  Similarity=0.250  Sum_probs=104.6

Q ss_pred             HHHHcC--CeEEEcCCCCCC---CCCChHHHHHHH-HHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCc
Q 029908            3 AAKEAG--ALLSYDPNLRLP---LWPSPEEAREQI-MSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLK   72 (185)
Q Consensus         3 ~a~~~g--~~v~~D~~~~~~---~~~~~~~~~~~~-~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~   72 (185)
                      .+++.+  +++++||+.+..   .|.. +...+.+ .++++++|+++||..|++.|++.+..+.+++    +++++.|++
T Consensus        98 ~~~~~~~~~~vv~Dpv~~d~~~~~~~~-~~~~~~~~~~ll~~adii~pN~~Ea~~L~g~~~~~~~~~~~~~~~l~~~g~~  176 (286)
T TIGR00687        98 QVKQANPQALYVCDPVMGDPEKGCYVA-PDLLEVYREKAIPVADIITPNQFELELLTGRKINTVEEALAAADALIAMGPD  176 (286)
T ss_pred             HHHHhCCCCcEEECCeeeeCCCCeeeC-hhHHHHHHHhccccccEecCCHHHHHHHhCCCcCCHHHHHHHHHHHHHhCCC
Confidence            445544  679999987642   3332 3344444 4689999999999999999999765444333    356678999


Q ss_pred             EEEEE-cCCCce--------EEEEcCceeEecCcccc-cccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHH
Q 029908           73 LLLVT-LGEHGC--------RYYTKSFKGAVDAFRVK-TVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANAC  142 (185)
Q Consensus        73 ~vvit-~G~~G~--------~~~~~~~~~~~~~~~~~-~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~  142 (185)
                      .|++| .|..|+        +++++++.++.+.++.+ ++|++|+||+|+|+|++++++|.+       +++++++|+++
T Consensus       177 ~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~A~~l~~l~~g~~-------~~~al~~A~~~  249 (286)
T TIGR00687       177 IVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPLAVFMRQPVGTGDLIAALLLATLLHGNS-------LKEALEKTVSA  249 (286)
T ss_pred             EEEEEeccccCCCCCcceeEEEEcCCceEEEeccCcCCCCCCCChHHHHHHHHHHHHhcCCC-------HHHHHHHHHHH
Confidence            99999 577774        44555666777766776 689999999999999999999999       99999999999


Q ss_pred             hHHHhh
Q 029908          143 GALSTT  148 (185)
Q Consensus       143 aa~~~~  148 (185)
                      ....+.
T Consensus       250 v~~~l~  255 (286)
T TIGR00687       250 VYHVLV  255 (286)
T ss_pred             HHHHHH
Confidence            444443

ThiD and related proteins form an outgroup.

>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed

Probab=99.81  E-value=5.5e-19  Score=142.54  Aligned_cols=135  Identities=20%  Similarity=0.198  Sum_probs=104.4

Q ss_pred             cCCeEEEcCCCCC---CCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCcEEEEEcC
Q 029908            7 AGALLSYDPNLRL---PLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLKLLLVTLG   79 (185)
Q Consensus         7 ~g~~v~~D~~~~~---~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~~vvit~G   79 (185)
                      .+.++++||+.+.   ..|.+++.......++++++|+++||..|++.|++.+..+.+++    +++.+.|++.|+||.|
T Consensus       118 ~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~~~~~~~~~~~~l~~~g~~~VvIT~g  197 (281)
T PRK08176        118 PDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEILTGKPCRTLDSAIAAAKSLLSDTLKWVVITSA  197 (281)
T ss_pred             CCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCEEEEeec
Confidence            4789999998665   35543333333334689999999999999999999765444332    3677789999999999


Q ss_pred             CCc-------eEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhc
Q 029908           80 EHG-------CRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTK  149 (185)
Q Consensus        80 ~~G-------~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~  149 (185)
                      ..|       ++++++++.+..+ .+...++++|+||+|+|+|++++++|.+       +++|+++|+......++.
T Consensus       198 ~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~GaGD~faa~~~a~l~~g~~-------l~~Av~~A~~~v~~~i~~  266 (281)
T PRK08176        198 AGNEENQEMQVVVVTADSVNVIS-HPRVDTDLKGTGDLFCAELVSGLLKGKA-------LTDAAHRAGLRVLEVMRY  266 (281)
T ss_pred             cCCCCCCcEEEEEEeCCceEEEe-cCccCCCCCChhHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHH
Confidence            987       5666666544443 3445579999999999999999999999       999999999888777754

>PRK12616 pyridoxal kinase; Reviewed

Probab=99.81  E-value=9.2e-19  Score=140.51  Aligned_cols=140  Identities=19%  Similarity=0.143  Sum_probs=108.0

Q ss_pred             HHHHcC-CeEEEcCCCCCCCCC---ChHHHHHHHHHhhccccEEEcCHHHHhHhhCC-CCCCHHHH----HHhcCCCCcE
Q 029908            3 AAKEAG-ALLSYDPNLRLPLWP---SPEEAREQIMSIWDKAEVIKVSDVELEFLTGS-DKIDDESA----LSLWHPNLKL   73 (185)
Q Consensus         3 ~a~~~g-~~v~~D~~~~~~~~~---~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~-~~~~~~~~----~~l~~~g~~~   73 (185)
                      ..++.+ .+|++||...+....   ..+........+++++|+++||..|++.|++. ...+.+++    +++.+.|++.
T Consensus        95 ~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g~~~~~~~~~~~~aa~~l~~~G~~~  174 (270)
T PRK12616         95 TIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSGMGEIKTVEQMKEAAKKIHELGAQY  174 (270)
T ss_pred             HHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence            445555 469999998643221   12233334445889999999999999999986 33333322    3666789999


Q ss_pred             EEEEcCCCce------EEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHh
Q 029908           74 LLVTLGEHGC------RYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALST  147 (185)
Q Consensus        74 vvit~G~~G~------~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~  147 (185)
                      |+||.|..|.      +++++++.+.++.++++..+++|+||+|.|+|+++|++|.+       +++|+++|..+....+
T Consensus       175 VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~fsaalaa~l~~g~~-------l~~Av~~A~~~~~~~i  247 (270)
T PRK12616        175 VVITGGGKLKHEKAVDVLYDGETAEVLESEMIDTPYTHGAGCTFSAAVTAELAKGSE-------VKEAIYAAKEFITAAI  247 (270)
T ss_pred             EEEeCCCCCcCCceEEEEEECCeEEEEEeeeeCCCCCCcHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHH
Confidence            9999998752      55666666778888888889999999999999999999999       9999999999988887


Q ss_pred             hc
Q 029908          148 TK  149 (185)
Q Consensus       148 ~~  149 (185)
                      ..
T Consensus       248 ~~  249 (270)
T PRK12616        248 KE  249 (270)
T ss_pred             HH
Confidence            75

>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]

Probab=99.76  E-value=1.1e-17  Score=134.08  Aligned_cols=139  Identities=19%  Similarity=0.268  Sum_probs=110.7

Q ss_pred             HHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCC---CCCHHHH-H------HhcCCCCcE
Q 029908            4 AKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSD---KIDDESA-L------SLWHPNLKL   73 (185)
Q Consensus         4 a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~---~~~~~~~-~------~l~~~g~~~   73 (185)
                      |.+.+.+.+++.+...    ..+...+.+.++++|+|+++.|++|++.+....   ..+...+ .      +.....++.
T Consensus       184 ~~e~~r~~~lnlsapf----I~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~~~~t~dv~eia~~~~~~~k~~~~~~r~  259 (343)
T KOG2854|consen  184 AAENNRVFTLNLSAPF----ISQFFKDALDKVLPYADIIFGNEDEAAAFARAHGWETKDVKEIALKLSALPKVNGTRPRT  259 (343)
T ss_pred             HHHhcchhheeccchh----HHHHHHHHHHhhcCcceEEEcCHHHHHHHHHhhCCcccchHHHhhHhhccccccccccce
Confidence            4455556666664321    146678888999999999999999999987544   2222111 1      222256889


Q ss_pred             EEEEcCCCceEEEEcCceeEecCccc---ccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhcc
Q 029908           74 LLVTLGEHGCRYYTKSFKGAVDAFRV---KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKK  150 (185)
Q Consensus        74 vvit~G~~G~~~~~~~~~~~~~~~~~---~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~  150 (185)
                      ++||.|..+++...++..+.+|..+.   .++|++||||+|.+||++.|.+|.+       +++|++.|+.+++.++...
T Consensus       260 vvit~g~~~~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l~qg~~-------l~~cir~g~~aa~~vi~~~  332 (343)
T KOG2854|consen  260 VVITQGPDPVIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQLVQGKS-------LEECIRAGSYAASHVIRRV  332 (343)
T ss_pred             EEEccCCCceEEecCCceEEeccccccceeeeeCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHhhheeecc
Confidence            99999999999999988887777765   6999999999999999999999999       9999999999999999999


Q ss_pred             CCC
Q 029908          151 GAI  153 (185)
Q Consensus       151 g~~  153 (185)
                      |+.
T Consensus       333 G~~  335 (343)
T KOG2854|consen  333 GCT  335 (343)
T ss_pred             CCC
Confidence            985

>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.74  E-value=1.1e-17  Score=136.92  Aligned_cols=142  Identities=27%  Similarity=0.294  Sum_probs=122.7

Q ss_pred             ChHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHH---HHHhcC-CCCcEEEE
Q 029908            1 MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDES---ALSLWH-PNLKLLLV   76 (185)
Q Consensus         1 l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~---~~~l~~-~g~~~vvi   76 (185)
                      ++.||++|+||.+||....             .+.+..+++|+||..|++...|....+.+-   .++|.+ .+...+++
T Consensus       164 I~~ar~~~~pVLvDPKg~D-------------f~~Y~GAtLiTPN~~E~~~~vg~~~~e~el~~~g~kL~~~~~L~alLv  230 (467)
T COG2870         164 IDLAREAGIPVLVDPKGKD-------------FEKYRGATLITPNLKEFEEAVGKCKSEEELEERGQKLKEELDLSALLV  230 (467)
T ss_pred             HHHHHHcCCcEEECCCCcc-------------hhhhCCCeecCCCHHHHHHHHcccccHHHHHHHHHHHHHhhCcceEEE
Confidence            4689999999999997532             234568999999999999999988765321   224543 78899999


Q ss_pred             EcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCC
Q 029908           77 TLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPAL  156 (185)
Q Consensus        77 t~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~  156 (185)
                      |++.+|..++..++..|+|+...++.|.|||||+-.|.|+.+++.|.+       +++|+.+||++|+..+.+.|+.  .
T Consensus       231 TRsE~GMtL~~~~~~~h~pt~AkEVyDVTGAGDTVIa~la~~laaG~s-------~~eAc~lAN~AagiVVgKlGTa--t  301 (467)
T COG2870         231 TRSEKGMTLFQEGKPLHFPARAKEVYDVTGAGDTVIAVLAAALAAGAS-------LEEACELANAAAGIVVGKLGTA--T  301 (467)
T ss_pred             EeccCCceeecCCcccccchhheeeeeccCCCchHHHHHHHHHHcCCC-------HHHHHHHhhhhcceEEeeccce--e
Confidence            999999999998888999999999999999999999999999999999       9999999999999999999975  3


Q ss_pred             CCHHHHHH
Q 029908          157 PTESEALA  164 (185)
Q Consensus       157 ~~~~~i~~  164 (185)
                      .+.+|+..
T Consensus       302 vs~~EL~n  309 (467)
T COG2870         302 VSPEELEM  309 (467)
T ss_pred             ecHHHHHh
Confidence            57788876

>PTZ00344 pyridoxal kinase; Provisional

Probab=99.72  E-value=2.1e-16  Score=128.43  Aligned_cols=137  Identities=18%  Similarity=0.146  Sum_probs=101.7

Q ss_pred             HHHcC--CeEEEcCCC--CCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCcEEE
Q 029908            4 AKEAG--ALLSYDPNL--RLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLKLLL   75 (185)
Q Consensus         4 a~~~g--~~v~~D~~~--~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~~vv   75 (185)
                      +++++  +++++||+.  +..+|. .+.+.+.+.++++++|+++||..|++.|+|.+..+.+++    +++.+.|++.||
T Consensus       102 ~~~~~~~~~vv~DPv~~~~g~l~~-~~~~~~~~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~~~~~l~~~g~~~Vv  180 (296)
T PTZ00344        102 IKELRPKLIFLCDPVMGDDGKLYV-KEEVVDAYRELIPYADVITPNQFEASLLSGVEVKDLSDALEAIDWFHEQGIPVVV  180 (296)
T ss_pred             HHHhCCCceEEECCccccCCceEe-CHHHHHHHHHHhhhCCEEeCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence            34454  589999876  345674 567778888999999999999999999999764443332    356667999999


Q ss_pred             EE---cCCCc----eEEEEc------CceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHH
Q 029908           76 VT---LGEHG----CRYYTK------SFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANAC  142 (185)
Q Consensus        76 it---~G~~G----~~~~~~------~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~  142 (185)
                      ||   .|..|    +++.+.      ++.+.+..++++ .+++|+||+|+|+|++.+++| +       +.+++++|.+.
T Consensus       181 VTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~GaGD~f~A~~~a~l~~g-~-------~~~a~~~A~a~  251 (296)
T PTZ00344        181 ITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYIE-GRYTGTGDLFAALLLAFSHQH-P-------MDLAVGKAMGV  251 (296)
T ss_pred             EEeecCCCCCCcEEEEEEeccccCCCceeEEEeccccC-CCCCCchHHHHHHHHHHHhcC-C-------HHHHHHHHHHH
Confidence            99   44445    344321      234556666655 467999999999999888888 8       99999999988


Q ss_pred             hHHHhhcc
Q 029908          143 GALSTTKK  150 (185)
Q Consensus       143 aa~~~~~~  150 (185)
                      ....++..
T Consensus       252 ~~~~i~~~  259 (296)
T PTZ00344        252 LQDIIKAT  259 (296)
T ss_pred             HHHHHHHH
Confidence            88776553

>PTZ00347 phosphomethylpyrimidine kinase; Provisional

Probab=99.70  E-value=3.5e-16  Score=135.54  Aligned_cols=135  Identities=18%  Similarity=0.143  Sum_probs=103.6

Q ss_pred             CCeEEEcCCCCC----CCCCC--hHHHHHHH-HHhhccccEEEcCHHHHhHhhCCC-CCCHHHH----HHhcCCCCcEEE
Q 029908            8 GALLSYDPNLRL----PLWPS--PEEAREQI-MSIWDKAEVIKVSDVELEFLTGSD-KIDDESA----LSLWHPNLKLLL   75 (185)
Q Consensus         8 g~~v~~D~~~~~----~~~~~--~~~~~~~~-~~~l~~~dii~~n~~E~~~l~~~~-~~~~~~~----~~l~~~g~~~vv   75 (185)
                      +.+|++||..+.    .++..  .+...+.+ .++++++|+|+||..|++.|+|.+ ..+.+++    +.+.+.|++.|+
T Consensus       323 ~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~~~~~~~~~aa~~l~~~G~~~Vv  402 (504)
T PTZ00347        323 NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAERILGRKEITGVYEARAAAQALAQYGSRYVL  402 (504)
T ss_pred             CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence            678999998753    23321  12223333 368899999999999999999964 3332222    366678999999


Q ss_pred             EEcCCCc-------eEEEEc--CceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHH
Q 029908           76 VTLGEHG-------CRYYTK--SFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALS  146 (185)
Q Consensus        76 it~G~~G-------~~~~~~--~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~  146 (185)
                      ||.|..|       ..++.+  +..++++.+++++++++|+||+|+|+|++++++|.+       +.+|++.|.......
T Consensus       403 Vtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~GaGD~fsaaiaa~la~G~~-------l~eAv~~A~~~v~~~  475 (504)
T PTZ00347        403 VKGGHDLIDPEACRDVLYDREKDRFYEFTANRIATINTHGTGCTLASAISSFLARGYT-------VPDAVERAIGYVHEA  475 (504)
T ss_pred             EeCCCCCcCCCcceEEEEcCCCCeEEEEEeeeECCCCCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHH
Confidence            9999863       445543  346778888888999999999999999999999999       999999999888877


Q ss_pred             hhc
Q 029908          147 TTK  149 (185)
Q Consensus       147 ~~~  149 (185)
                      +..
T Consensus       476 i~~  478 (504)
T PTZ00347        476 IVR  478 (504)
T ss_pred             HHh
Confidence            765

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=99.70  E-value=4.9e-16  Score=134.60  Aligned_cols=141  Identities=18%  Similarity=0.136  Sum_probs=107.5

Q ss_pred             HHHHcCCe-EEEcCCCCCCCCC--ChHHHHHHH-HHhhccccEEEcCHHHHhHhhCCC-CCCHHH----HHHhcCCCCcE
Q 029908            3 AAKEAGAL-LSYDPNLRLPLWP--SPEEAREQI-MSIWDKAEVIKVSDVELEFLTGSD-KIDDES----ALSLWHPNLKL   73 (185)
Q Consensus         3 ~a~~~g~~-v~~D~~~~~~~~~--~~~~~~~~~-~~~l~~~dii~~n~~E~~~l~~~~-~~~~~~----~~~l~~~g~~~   73 (185)
                      .+++.+.+ |++||........  ..+...+.+ .++++++|+++||..|++.|++.. ..+.++    ++++.+.|++.
T Consensus        99 ~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~g~~~~~~~~~~~~~a~~l~~~G~~~  178 (502)
T PLN02898         99 ALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALLGGDPLETVADMRSAAKELHKLGPRY  178 (502)
T ss_pred             HHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCCE
Confidence            45666774 9999976432211  122333344 478999999999999999999753 222222    23666789999


Q ss_pred             EEEEcCCCc------eEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHh
Q 029908           74 LLVTLGEHG------CRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALST  147 (185)
Q Consensus        74 vvit~G~~G------~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~  147 (185)
                      |+||.|..+      .++++++..++++.++++.++++|+||+|.|+|++++++|.+       +++|+++|..+....+
T Consensus       179 VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~t~GaGD~fsaaiaa~l~~G~~-------l~eAv~~A~~~v~~ai  251 (502)
T PLN02898        179 VLVKGGHLPDSLDAVDVLYDGTEFHELRSSRIKTRNTHGTGCTLASCIAAELAKGSD-------MLSAVKVAKRYVETAL  251 (502)
T ss_pred             EEEcCCCCCCCCcceEEEEcCCeEEEEecceeCCCCCCchhhhHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHH
Confidence            999999753      356666666778888888899999999999999999999999       9999999999999988


Q ss_pred             hcc
Q 029908          148 TKK  150 (185)
Q Consensus       148 ~~~  150 (185)
                      .+.
T Consensus       252 ~~~  254 (502)
T PLN02898        252 EYS  254 (502)
T ss_pred             Hhh
Confidence            764

>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2

Probab=99.70  E-value=3.3e-16  Score=124.15  Aligned_cols=140  Identities=21%  Similarity=0.200  Sum_probs=101.7

Q ss_pred             HHHHcCCeEEEcCCCCCC---CCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHH----HhcCCCCcEEE
Q 029908            3 AAKEAGALLSYDPNLRLP---LWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL----SLWHPNLKLLL   75 (185)
Q Consensus         3 ~a~~~g~~v~~D~~~~~~---~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~----~l~~~g~~~vv   75 (185)
                      ..++.+.++++||.....   .+..++.......+++|++|+|+||..|++.|++....+.+++.    ++++.|++.|+
T Consensus        81 ~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~~i~~~~~~~~~~~~l~~~G~~~Vv  160 (246)
T PF08543_consen   81 FLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGREINSEEDIEEAAKALLALGPKNVV  160 (246)
T ss_dssp             HHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS--SSHHHHHHHHHHHHHTS-SEEE
T ss_pred             HHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCCCCCChHhHHHHHHHHHHhCCceEE
Confidence            345677899999976531   22223344444445999999999999999999997766655443    67779999999


Q ss_pred             EEcCCC----c---eEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhh
Q 029908           76 VTLGEH----G---CRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTT  148 (185)
Q Consensus        76 it~G~~----G---~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~  148 (185)
                      ||.+..    +   .+++++++.+.++.+..+..+.+|+||.|.|++++.|++|.+       +++|++.|.......++
T Consensus       161 Itg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~GTGd~fss~laa~l~~g~~-------l~~Av~~A~~~v~~~i~  233 (246)
T PF08543_consen  161 ITGGHLDGDEGIITDVLYDGGEFYWLSSPRIPTGSFHGTGDLFSSALAAFLAKGYS-------LEEAVEKAKNFVRRAIK  233 (246)
T ss_dssp             EEEEEGGSSCEEEEEEEETTSEEEEEEEEEECTSGCTTHHHHHHHHHHHHHHTTSS-------HHHHHHHHHHHHHHHHH
T ss_pred             EeeeccccccccccceeeeccceeecceeEEcCCCCCCchhHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHH
Confidence            999863    1   444556677777777666678999999999999999999999       99999999988777766


Q ss_pred             c
Q 029908          149 K  149 (185)
Q Consensus       149 ~  149 (185)
                      +
T Consensus       234 ~  234 (246)
T PF08543_consen  234 N  234 (246)
T ss_dssp             H
T ss_pred             H
Confidence            3

7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....

>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]

Probab=99.69  E-value=9.3e-16  Score=120.94  Aligned_cols=139  Identities=21%  Similarity=0.161  Sum_probs=113.1

Q ss_pred             HHHHcC-CeEEEcCCCCCCCCCC---hHHHHHHHHHhhccccEEEcCHHHHhHhhCC-CCCCHHHHH----HhcCCCCcE
Q 029908            3 AAKEAG-ALLSYDPNLRLPLWPS---PEEAREQIMSIWDKAEVIKVSDVELEFLTGS-DKIDDESAL----SLWHPNLKL   73 (185)
Q Consensus         3 ~a~~~g-~~v~~D~~~~~~~~~~---~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~-~~~~~~~~~----~l~~~g~~~   73 (185)
                      ..++.+ .++++||.+.......   ++.......+++|++++++||..|++.|.|. ...+.++++    .+.+.|++.
T Consensus        93 ~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i~~~~d~~~a~~~i~~~g~~~  172 (263)
T COG0351          93 KLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPKIKTEEDMKEAAKLLHELGAKA  172 (263)
T ss_pred             HHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCccCCHHHHHHHHHHHHHhCCCE
Confidence            445666 7799999776544442   3344444458999999999999999999995 665555554    444789999


Q ss_pred             EEEEcCCCc----eEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhh
Q 029908           74 LLVTLGEHG----CRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTT  148 (185)
Q Consensus        74 vvit~G~~G----~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~  148 (185)
                      |+|+.|...    .+++.++..+.++.+.++..+++|+|++|.|++++.|++|.+       +.+|++.|-..-...++
T Consensus       173 VliKGGH~~~~~~D~l~~~~~~~~f~~~ri~t~~tHGTGCTlSaAIaa~LA~G~~-------l~~AV~~Ak~fv~~AI~  244 (263)
T COG0351         173 VLIKGGHLEGEAVDVLYDGGSFYTFEAPRIPTKNTHGTGCTLSAAIAANLAKGLS-------LEEAVKKAKEFVTRAIR  244 (263)
T ss_pred             EEEcCCCCCCCceeEEEcCCceEEEeccccCCCCCCCccHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHh
Confidence            999998743    566777778888999999999999999999999999999999       99999999988888887

>PLN02978 pyridoxal kinase

Probab=99.66  E-value=4.3e-15  Score=121.37  Aligned_cols=134  Identities=18%  Similarity=0.127  Sum_probs=98.6

Q ss_pred             cCCeEEEcCCCCC--CCCCChHHHHHHHH-HhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCcEEEEEcC
Q 029908            7 AGALLSYDPNLRL--PLWPSPEEAREQIM-SIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLKLLLVTLG   79 (185)
Q Consensus         7 ~g~~v~~D~~~~~--~~~~~~~~~~~~~~-~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~~vvit~G   79 (185)
                      .++++++||+++.  .+|.. +...+.+. ++++++|+++||..|++.|++.+..+.+++    +++.+.|++.||||.+
T Consensus       116 ~~~~vvlDPvm~d~G~l~~~-~~~~~~~~~~ll~~adiitPN~~Ea~~L~g~~~~~~~~~~~a~~~l~~~g~~~VVITs~  194 (308)
T PLN02978        116 PNLTYVCDPVLGDEGKLYVP-PELVPVYREKVVPLATMLTPNQFEAEQLTGIRIVTEEDAREACAILHAAGPSKVVITSI  194 (308)
T ss_pred             CCCeEEECCcccCCCCccCC-hhHHHHHHHHHHhhCCeeccCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCEEEEEEe
Confidence            4578999999876  45643 34555554 699999999999999999999765443322    3566789999999875


Q ss_pred             C-CceEEEEc---------CceeEecCcccccccCCCcchHHHHHHHHHHHcc-CCCCCChHHHHHHHHHHHHHhHHHhh
Q 029908           80 E-HGCRYYTK---------SFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDD-QSAIEDEPRLREILKFANACGALSTT  148 (185)
Q Consensus        80 ~-~G~~~~~~---------~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g-~~~~~~~~~~~~a~~~a~~~aa~~~~  148 (185)
                      . .|......         ++.++++.++.+.. .+|+||+|+|++++.+++| .+       +++|++.|.......++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~GtGD~fsA~laa~l~~g~~~-------l~~A~~~A~~~v~~~i~  266 (308)
T PLN02978        195 DIDGKLLLVGSHRKEKGARPEQFKIVIPKIPAY-FTGTGDLMAALLLGWSHKYPDN-------LDKAAELAVSSLQAVLR  266 (308)
T ss_pred             cCCCCEEEEEecccccCCCCceEEEEccCCCCC-CCCchHHHHHHHHHHHhcCCcC-------HHHHHHHHHHHHHHHHH
Confidence            4 34332211         24566777666655 5899999999988888887 68       99999999988776665


Q ss_pred             c
Q 029908          149 K  149 (185)
Q Consensus       149 ~  149 (185)
                      .
T Consensus       267 ~  267 (308)
T PLN02978        267 R  267 (308)
T ss_pred             H
Confidence            5

>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional

Probab=99.65  E-value=4e-15  Score=129.63  Aligned_cols=132  Identities=22%  Similarity=0.185  Sum_probs=100.5

Q ss_pred             CCeEEEcCCCCC----CCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCC-CCHHHH----HHhcCCCCcEEEEEc
Q 029908            8 GALLSYDPNLRL----PLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDK-IDDESA----LSLWHPNLKLLLVTL   78 (185)
Q Consensus         8 g~~v~~D~~~~~----~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~-~~~~~~----~~l~~~g~~~vvit~   78 (185)
                      +.+|++||+.+.    .++  .+...+.+.++++++|+|+||..|++.|+|.+. .+.+++    +++.+.+...||||.
T Consensus       125 ~~~vVlDPv~~~~~G~~l~--~~~~~~~~~~Ll~~advItPN~~Ea~~Ltg~~~~~~~~d~~~aa~~L~~~~g~~VvItg  202 (530)
T PRK14713        125 PPVVVLDPVMVATSGDRLL--EEDAEAALRELVPRADLITPNLPELAVLLGEPPATTWEEALAQARRLAAETGTTVLVKG  202 (530)
T ss_pred             CCCEEECCcccCCCCCCCC--CHHHHHHHHHHhhhhheecCChHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCEEEEeC
Confidence            346999998864    233  345667778899999999999999999998753 233332    355555556899998


Q ss_pred             CCCc-----eEEEEc-CceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhh
Q 029908           79 GEHG-----CRYYTK-SFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTT  148 (185)
Q Consensus        79 G~~G-----~~~~~~-~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~  148 (185)
                      |..+     ..++.. ++.++++.++++.++++|+||+|.|+|+++|++|.+       +.++++.|...-...+.
T Consensus       203 G~~~~~~~~d~~~~~~~~~~~~~~~~v~~~~t~GaGD~fsaalaa~La~G~~-------l~eAv~~A~~~v~~~i~  271 (530)
T PRK14713        203 GHLDGQRAPDALVGPDGAVTEVPGPRVDTRNTHGTGCSLSSALATRLGRGGD-------WAAALRWATAWLHGAIA  271 (530)
T ss_pred             CCCCCCcceEEEEcCCCeEEEEeeeeeCCCCCCcHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHH
Confidence            8642     344443 346778888888899999999999999999999999       99999999985554443

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=99.64  E-value=3.5e-15  Score=134.61  Aligned_cols=141  Identities=18%  Similarity=0.170  Sum_probs=105.7

Q ss_pred             HHHH-cCCeEEEcCCCCCCCCCC--hHHHHHHHHHhhccccEEEcCHHHHhHhhCCC-CCCHHHH----HHhcCCCCcEE
Q 029908            3 AAKE-AGALLSYDPNLRLPLWPS--PEEAREQIMSIWDKAEVIKVSDVELEFLTGSD-KIDDESA----LSLWHPNLKLL   74 (185)
Q Consensus         3 ~a~~-~g~~v~~D~~~~~~~~~~--~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~-~~~~~~~----~~l~~~g~~~v   74 (185)
                      .+++ .+.+|++||..+......  .+...+.+.++++++|+|+||..|++.|++.. ..+.+++    +++.+.+...|
T Consensus       331 ~l~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp~adlItPN~~Ea~~L~g~~~~~~~~d~~~aa~~L~~~~g~~V  410 (755)
T PRK09517        331 WLGSHEHGPVVLDPVMVATSGDRLLDADATEALRRLAVHVDVVTPNIPELAVLCGEAPAITMDEAIAQARGFARTHGTIV  410 (755)
T ss_pred             HHHhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHhCcccCccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCEE
Confidence            3445 357799999876432111  23444556689999999999999999999853 2232322    35555444589


Q ss_pred             EEEcCC------CceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhh
Q 029908           75 LVTLGE------HGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTT  148 (185)
Q Consensus        75 vit~G~------~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~  148 (185)
                      |||.|.      .|+++..++..++++.++++.++++|+||+|.|+|+++|++|.+       +++|++.|.......+.
T Consensus       411 VVkgGh~~~~~~~~~l~~~~~~~~~~~~~~v~~~~t~GaGDtfsaaiaa~La~G~s-------l~eAv~~A~~~v~~~i~  483 (755)
T PRK09517        411 IVKGGHLTGDLADNAVVRPDGSVHQVENPRVNTTNSHGTGCSLSAALATLIAAGES-------VEKALEWATRWLNEALR  483 (755)
T ss_pred             EEcCCcCCCCccceEEEeCCCeEEEEeecccCCCCCcChHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHH
Confidence            999984      45665555556788888899999999999999999999999999       99999999998888886


Q ss_pred             cc
Q 029908          149 KK  150 (185)
Q Consensus       149 ~~  150 (185)
                      +.
T Consensus       484 ~a  485 (755)
T PRK09517        484 HA  485 (755)
T ss_pred             hc
Confidence            53

>cd01171 YXKO-related B

Probab=99.52  E-value=1.4e-13  Score=109.32  Aligned_cols=131  Identities=15%  Similarity=-0.007  Sum_probs=95.2

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHH--HhhccccEEEcCHHHHhHhhCCCCCCH-----HHHHHhcCCCCcEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIM--SIWDKAEVIKVSDVELEFLTGSDKIDD-----ESALSLWHPNLKLL   74 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~--~~l~~~dii~~n~~E~~~l~~~~~~~~-----~~~~~l~~~g~~~v   74 (185)
                      +.++++++|+++|+...        .......  .+++.+++++||..|++.|++....+.     +.++++.+.+. .+
T Consensus        98 ~~~~~~~~pvVlDa~~~--------~~~~~~~~~~~~~~~~iltPn~~E~~~L~g~~~~~~~~~~~~~a~~l~~~~~-~~  168 (254)
T cd01171          98 EKALAKDKPLVLDADAL--------NLLADEPSLIKRYGPVVLTPHPGEFARLLGALVEEIQADRLAAAREAAAKLG-AT  168 (254)
T ss_pred             HHHHhcCCCEEEEcHHH--------HHhhcChhhhccCCCEEECCCHHHHHHHhCCChhhhhhHHHHHHHHHHHHcC-cE
Confidence            45677899999998631        1111000  246789999999999999998754321     12235555554 45


Q ss_pred             EEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhc
Q 029908           75 LVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTK  149 (185)
Q Consensus        75 vit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~  149 (185)
                      |+..| .+.+++++++.++++....+.++++|+||+|+|.+++.+++|.+       +.+|+++|+.+.+.+.+.
T Consensus       169 vvlkG-~~~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~g~~-------~~eA~~~A~~~~~~a~~~  235 (254)
T cd01171         169 VVLKG-AVTVIADPDGRVYVNPTGNPGLATGGSGDVLAGIIAALLAQGLS-------PLEAAALAVYLHGLAGDL  235 (254)
T ss_pred             EEEcC-CCCEEECCCCcEEEECCCCcccccCchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHH
Confidence            55667 46777776556677777778899999999998888888889999       999999999888887764

subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.

>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz

Probab=99.48  E-value=1.5e-12  Score=103.00  Aligned_cols=133  Identities=18%  Similarity=0.088  Sum_probs=94.0

Q ss_pred             HHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhcc--ccEEEcCHHHHhHhhCCCCCC---------HHH----HHHhc
Q 029908            3 AAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDK--AEVIKVSDVELEFLTGSDKID---------DES----ALSLW   67 (185)
Q Consensus         3 ~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~--~dii~~n~~E~~~l~~~~~~~---------~~~----~~~l~   67 (185)
                      .+++.++|+++||......   .. ..+.+.++++.  +|+|+||..|++.|++.+...         .++    ++++.
T Consensus        74 ~~~~~~~pvVlDp~~~~~~---~~-~~~~~~~ll~~~~~~ilTPN~~Ea~~L~g~~~~~~~~~~~~~~~~~~~~aa~~l~  149 (242)
T cd01170          74 AANQLGKPVVLDPVGVGAT---SF-RTEVAKELLAEGQPTVIRGNASEIAALAGLTGLGKGVDSSSSDEEDALELAKALA  149 (242)
T ss_pred             HHHhcCCCEEEcccccCcc---hh-HHHHHHHHHhcCCCeEEcCCHHHHHHHhCCCCCcCcccCCCcchHHHHHHHHHHH
Confidence            4778899999999754211   11 12334555665  999999999999999865321         222    23555


Q ss_pred             CCCCcEEEEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHh
Q 029908           68 HPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALST  147 (185)
Q Consensus        68 ~~g~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~  147 (185)
                      +.+...|++| |... +++++++.++++..+..+.+.+|+||+|.|+++..+++|.+       +.+|+..|...-+...
T Consensus       150 ~~~~~~Vllk-G~~d-~l~~~~~~~~~~~~~~~~~~v~GtGdtLa~aiAa~LA~g~~-------~~~A~~~A~~~~~~a~  220 (242)
T cd01170         150 RKYGAVVVVT-GEVD-YITDGERVVVVKNGHPLLTKITGTGCLLGAVIAAFLAVGDD-------PLEAAVSAVLVYGIAG  220 (242)
T ss_pred             HHhCCEEEEE-CCCc-EEEECCEEEEEeCCCccccCCCchHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHH
Confidence            5455578888 5444 45666777778765555556699999999999999999999       9999999976655554


Q ss_pred             h
Q 029908          148 T  148 (185)
Q Consensus       148 ~  148 (185)
                      .
T Consensus       221 ~  221 (242)
T cd01170         221 E  221 (242)
T ss_pred             H
Confidence            3

A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.

>PTZ00493 phosphomethylpyrimidine kinase; Provisional

Probab=99.45  E-value=2.4e-12  Score=105.16  Aligned_cols=132  Identities=13%  Similarity=0.038  Sum_probs=95.4

Q ss_pred             eEEEcCCCCCCCCCC--h-HHH-HHHHHHhhccccEEEcCHHHHhHhhC-----CCCCCHHH----HHHhcC-CCCcEEE
Q 029908           10 LLSYDPNLRLPLWPS--P-EEA-REQIMSIWDKAEVIKVSDVELEFLTG-----SDKIDDES----ALSLWH-PNLKLLL   75 (185)
Q Consensus        10 ~v~~D~~~~~~~~~~--~-~~~-~~~~~~~l~~~dii~~n~~E~~~l~~-----~~~~~~~~----~~~l~~-~g~~~vv   75 (185)
                      +|++||.........  . ... .....+++|++++|+||..|++.|.+     ... ..++    ++++.+ .|++.|+
T Consensus       107 ~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~~L~g~~~~~~~~-~~~~~~~aA~~l~~~~G~~~Vl  185 (321)
T PTZ00493        107 LVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECKVILEALDCQMDL-SKANMTELCKLVTEKLNINACL  185 (321)
T ss_pred             eEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHHHHhCCCcccCCC-CHHHHHHHHHHHHHhcCCCEEE
Confidence            599999776543331  1 233 44445699999999999999999987     221 2222    235654 6999999


Q ss_pred             EEcCCCc------------eEEEEc---------------C------ceeEecCcccccccCCCcchHHHHHHHHHHHcc
Q 029908           76 VTLGEHG------------CRYYTK---------------S------FKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDD  122 (185)
Q Consensus        76 it~G~~G------------~~~~~~---------------~------~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g  122 (185)
                      |+.|...            .+++..               +      ..+.+..++.+..+++|+||+|.+++++.|++|
T Consensus       186 iKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~hGTGc~fASAIAa~LA~G  265 (321)
T PTZ00493        186 FKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGGVTYLYDVYKLRSKRKPGKDIHGTGCTLSTAIACYLAKK  265 (321)
T ss_pred             ECcCCCcccccccccccceeEEecCCccccccccccccccccccccceEEEEEecccCCCCCCChHHHHHHHHHHHHHcC
Confidence            9988632            133321               1      134566666666788999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHHHHhHHHhhc
Q 029908          123 QSAIEDEPRLREILKFANACGALSTTK  149 (185)
Q Consensus       123 ~~~~~~~~~~~~a~~~a~~~aa~~~~~  149 (185)
                      .+       +++|++.|.......+..
T Consensus       266 ~~-------l~~Av~~A~~fv~~aI~~  285 (321)
T PTZ00493        266 HN-------ILQSCIESKKYIYNCIRY  285 (321)
T ss_pred             CC-------HHHHHHHHHHHHHHHHHH
Confidence            99       999999999887777765

>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related

Probab=99.45  E-value=1.5e-12  Score=104.56  Aligned_cols=148  Identities=12%  Similarity=0.028  Sum_probs=99.0

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~~vvit   77 (185)
                      +.+++.+.|+++|+..        ...........+.+++|+||..|++.|++....+.++.    +++.+. .+.+|++
T Consensus       113 ~~~~~~~~pvVlDa~g--------~~l~~~~~~~~~~~~vItPN~~El~~L~g~~~~~~~~~~~aa~~l~~~-~~~vVv~  183 (272)
T TIGR00196       113 EEVLELDKPVVLDADA--------LNLLTYDKPKREGEVILTPHPGEFKRLLGLVNEIQGDRLEAAQDIAQK-LQAVVVL  183 (272)
T ss_pred             HHHHhcCCCEEEEhHH--------HHHHhhcccccCCCEEECCCHHHHHHHhCCchhhhhhHHHHHHHHHHH-hCCEEEE
Confidence            4567789999999852        22222211113468999999999999998754332222    244443 4468888


Q ss_pred             cCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHH---HHHhHHHhhcc-CCC
Q 029908           78 LGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFA---NACGALSTTKK-GAI  153 (185)
Q Consensus        78 ~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a---~~~aa~~~~~~-g~~  153 (185)
                      .|..+.++...+..+.. ..+....+++|+||++.|.+++.+++|.+       +.+|+..|   +..|+..+.+. |..
T Consensus       184 kG~~~~i~~~~~~~~~~-~~~~~~~~~~GaGD~lag~iaa~la~g~~-------~~~A~~~a~~~~~~a~~~~~~~~g~~  255 (272)
T TIGR00196       184 KGAADVIAAPDGDLWIN-KTGNAALAKGGTGDVLAGLIGGLLAQNLD-------PFDAACNAAFAHGLAGDLALKNHGAY  255 (272)
T ss_pred             cCCCCEEEcCCCeEEEE-CCCCCccCCCCchHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            89888866544444544 44556778999999976666666779998       99999777   77777766444 543


Q ss_pred             CCCCCHHHHHHHHhc
Q 029908          154 PALPTESEALALLKR  168 (185)
Q Consensus       154 ~~~~~~~~i~~~~~~  168 (185)
                       + ...+||.+.+.+
T Consensus       256 -~-~~~~dl~~~i~~  268 (272)
T TIGR00196       256 -G-LTALDLIEKIPR  268 (272)
T ss_pred             -C-cCHHHHHHHHHH
Confidence             3 366777766643

The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.

>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]

Probab=99.45  E-value=2.1e-12  Score=102.55  Aligned_cols=132  Identities=27%  Similarity=0.239  Sum_probs=100.7

Q ss_pred             CCeEEEcCCCCC--CCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHH----HhcCCCCcEEEEEcCCC
Q 029908            8 GALLSYDPNLRL--PLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL----SLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         8 g~~v~~D~~~~~--~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~----~l~~~g~~~vvit~G~~   81 (185)
                      ...+++||.+..  .+|...+....+..+++|.+|+++||..|++.|+|.+..+.++++    .|...|++.|+||+-..
T Consensus       104 ~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fELe~Ltg~~~~~~~da~~aa~~L~~~gp~~vlVTS~~~  183 (281)
T COG2240         104 NALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFELEILTGKPLNTLDDAVKAARKLGADGPKIVLVTSLSR  183 (281)
T ss_pred             CeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCCEEEEecccc
Confidence            456999996643  577655555666668999999999999999999999987766554    55568999999997443


Q ss_pred             -----ceEEEEcC---ceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhh
Q 029908           82 -----GCRYYTKS---FKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTT  148 (185)
Q Consensus        82 -----G~~~~~~~---~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~  148 (185)
                           |..++...   ...|+. +.++. ..+|.||.|+|.|++++++|.+       ..+++..+..+-...+.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~h~~-~~v~~-~~~GtGDL~sallla~lL~g~~-------~~~al~~~~~~V~evl~  249 (281)
T COG2240         184 AGMSTGNFEMLGKSAELAWHIS-PLVPF-IPNGTGDLFSALLLARLLEGLS-------LTQALERATAAVYEVLQ  249 (281)
T ss_pred             cCCCCceEEEeccchhhhhhhh-hcCCC-CCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHH
Confidence                 45555443   233333 23333 3899999999999999999999       99999999987776665

>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]

Probab=99.44  E-value=5.6e-13  Score=103.00  Aligned_cols=129  Identities=23%  Similarity=0.282  Sum_probs=98.9

Q ss_pred             cCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHH--HhcC-CCCcEEEEEcCCCce
Q 029908            7 AGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL--SLWH-PNLKLLLVTLGEHGC   83 (185)
Q Consensus         7 ~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~--~l~~-~g~~~vvit~G~~G~   83 (185)
                      .++.|++|...          .++...+++..+|+++.+.+-++.+.-....+.....  +... ...+.+|+.++++|+
T Consensus       164 qrI~vSvd~en----------~req~~~l~am~DyVf~sK~~a~~~gfks~rea~~~l~~r~~~~~pkpv~I~~w~~eGA  233 (308)
T KOG2947|consen  164 QRIRVSVDVEN----------PREQLFQLFAMCDYVFVSKDVAKHLGFKSPREACEGLYGRVPKGKPKPVLICPWASEGA  233 (308)
T ss_pred             ceEEEEEEecC----------cHHHHHHHhhcccEEEEEHHHHhhhccCCHHHHHHHHHhhcccCCCCcEEEeccccccc
Confidence            56778888743          3677788999999999999988888655544322211  1111 123568899999998


Q ss_pred             EEEEc-CceeEecCccc-ccccCCCcchHHHHHHHHHHH-ccCCCCCChHHHHHHHHHHHHHhHHHhhccCC
Q 029908           84 RYYTK-SFKGAVDAFRV-KTVDTTGAGDAFVGALLCKIV-DDQSAIEDEPRLREILKFANACGALSTTKKGA  152 (185)
Q Consensus        84 ~~~~~-~~~~~~~~~~~-~~~d~~GaGDaf~A~~~~~l~-~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~  152 (185)
                      -.... ++.+++++.+- +++|+.|+||+|.||++|+++ ++.+       +.+|+.+|+++|+.++...|-
T Consensus       234 ~~l~adg~yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~~r~-------l~eAvdfg~rvas~Kl~g~Gf  298 (308)
T KOG2947|consen  234 GALGADGKYFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQGRS-------LAEAVDFGNRVASKKLGGQGF  298 (308)
T ss_pred             cccCCCCCEEecCCCCCccceeeccCCCcchHHHHHHHHHhhhh-------HHHHHHHHHHhhhcccccccc
Confidence            87664 46667887764 799999999999999999976 5666       999999999999999988774

>PRK09355 hydroxyethylthiazole kinase; Validated

Probab=99.24  E-value=2.3e-10  Score=91.62  Aligned_cols=131  Identities=18%  Similarity=0.064  Sum_probs=87.5

Q ss_pred             HHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhc--cccEEEcCHHHHhHhhCCCCC--------CH----HHHHHhcC
Q 029908            3 AAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWD--KAEVIKVSDVELEFLTGSDKI--------DD----ESALSLWH   68 (185)
Q Consensus         3 ~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dii~~n~~E~~~l~~~~~~--------~~----~~~~~l~~   68 (185)
                      .+++.++|+++||......    ....+...++++  ++++|+||..|+..|.+....        ..    +.++++.+
T Consensus        79 ~a~~~~~pvVlDpv~~~~~----~~~~~~~~~ll~~~~~~vItPN~~E~~~L~g~~~~~~~vd~~~~~~~~~~~a~~la~  154 (263)
T PRK09355         79 IANEAGKPVVLDPVGVGAT----SYRTEFALELLAEVKPAVIRGNASEIAALAGEAAETKGVDSTDGSADAVEIAKAAAK  154 (263)
T ss_pred             HHHhcCCCEEECCcccCcc----hhhHHHHHHHHHhcCCcEecCCHHHHHHHhCCCcccCCcCCCCCHHHHHHHHHHHHH
Confidence            4678899999999764321    112233333443  689999999999999986421        11    11225555


Q ss_pred             CCCcEEEEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHH
Q 029908           69 PNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALS  146 (185)
Q Consensus        69 ~g~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~  146 (185)
                      .+...|++|.+.  .++++++..+.++.......+.+|+||++.|.+++.+..|.+       +.+++..|...-..+
T Consensus       155 ~~~~~VvvkG~~--d~I~~~~~~~~~~~g~~~~~~v~GtGc~L~~~iaa~lA~g~~-------~~~A~~~A~~~~~~a  223 (263)
T PRK09355        155 KYGTVVVVTGEV--DYITDGERVVSVHNGHPLMTKVTGTGCLLSAVVAAFAAVEKD-------YLEAAAAACAVYGIA  223 (263)
T ss_pred             HhCCEEEEECCC--cEEEeCCEEEEEeCCCcccCCcccccHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHH
Confidence            555578888543  455555555666533333445599999999999999999998       889988888655544

>TIGR00694 thiM hydroxyethylthiazole kinase

Probab=99.19  E-value=3.9e-10  Score=89.62  Aligned_cols=133  Identities=13%  Similarity=-0.005  Sum_probs=86.9

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhc--cccEEEcCHHHHhHhhCCCC------C--CHHH----HHHhc
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWD--KAEVIKVSDVELEFLTGSDK------I--DDES----ALSLW   67 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dii~~n~~E~~~l~~~~~------~--~~~~----~~~l~   67 (185)
                      +.++++++||++||......    ....+...++++  ++++|+||..|++.|.+...      .  ..++    ++++.
T Consensus        73 ~~~~~~~~pvVlDPV~~~~s----~~r~~~~~~Ll~~~~~~vITpN~~E~~~L~g~~~~~~gvd~~~~~~d~~~~a~~la  148 (249)
T TIGR00694        73 KSANELGVPVVLDPVGVGAT----KFRTETALELLSEGRFAAIRGNAGEIASLAGETGLMKGVDSGEGAADAIRAAQQAA  148 (249)
T ss_pred             HHHHhcCCCEEEcccccccc----hhHHHHHHHHHhhcCCceeCCCHHHHHHHhCCCCCCCCcCCccchHHHHHHHHHHH
Confidence            34667799999999764321    112233456676  47999999999999998541      0  1112    22444


Q ss_pred             CCCCcEEEEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHh
Q 029908           68 HPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALST  147 (185)
Q Consensus        68 ~~g~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~  147 (185)
                      +.+...|++|.+  ..+++++++.+.+...+......+|.||++.+++++.+++|.+       +.+|+..|...-....
T Consensus       149 ~~~~~~VllkG~--~D~i~~~~~~~~~~~g~~~~~~~~GtGc~LssaIaa~LA~g~~-------~~~A~~~A~~~~~~a~  219 (249)
T TIGR00694       149 QKYGTVVVITGE--VDYVSDGTSVYTIHNGTELLGKITGSGCLLGSVVAAFCAVEED-------PLDAAISACLLYKIAG  219 (249)
T ss_pred             HHhCCEEEEECC--CcEEEeCCEEEEECCCChHHhCCccchHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHH
Confidence            443337777765  3456666655554443322222479999999999999999998       8999988875444443

This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.

>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]

Probab=99.05  E-value=5.2e-09  Score=87.03  Aligned_cols=169  Identities=18%  Similarity=0.047  Sum_probs=120.0

Q ss_pred             CCeEEEcCCCCCCCCCC---hHHHHHHHHHhhccccEEEcCHHHHhHhhCCCC------CCHHHH----HHhcCCCCcEE
Q 029908            8 GALLSYDPNLRLPLWPS---PEEAREQIMSIWDKAEVIKVSDVELEFLTGSDK------IDDESA----LSLWHPNLKLL   74 (185)
Q Consensus         8 g~~v~~D~~~~~~~~~~---~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~------~~~~~~----~~l~~~g~~~v   74 (185)
                      -.++++||.......++   .+...-..++++|.+|+++||..|+..|.+...      .+..++    .++.+.|++.|
T Consensus       119 ~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll~~~~~~~~~i~~v~di~~~~~~ihk~gpk~V  198 (523)
T KOG2598|consen  119 IPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILLKKEKREISKIQSVFDIAKDAAKIHKLGPKNV  198 (523)
T ss_pred             CcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHHhhcccCCcccccHHHHHHHHHHHHhcCcceE
Confidence            34699999665444332   456677788999999999999999999987422      222232    36778999999


Q ss_pred             EEEcCCCc-----------------eEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHH
Q 029908           75 LVTLGEHG-----------------CRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILK  137 (185)
Q Consensus        75 vit~G~~G-----------------~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~  137 (185)
                      +++.|...                 .+++.+.+++.++.+-.....++|.|.++.++++.-|+.|.+       +.+|++
T Consensus       199 lvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~~~~t~~tHGtgCtLaSAIASnLA~g~s-------l~qAv~  271 (523)
T KOG2598|consen  199 LVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSPYLATKHTHGTGCTLASAIASNLARGYS-------LLQAVQ  271 (523)
T ss_pred             EEeCCCcCccccccccCcccCCceEEEEEecceEEEecccccccccccCccchHHHHHHHHHhhcCC-------HHHHHH
Confidence            99988431                 346777888899998889999999999999999999999999       999999


Q ss_pred             HHHHHhHHHhhccCCCC---CC-----------CC--HHHHHHHHhcCcchhhhhhhhhhhh
Q 029908          138 FANACGALSTTKKGAIP---AL-----------PT--ESEALALLKRSTIIDKIMSWIFFWF  183 (185)
Q Consensus       138 ~a~~~aa~~~~~~g~~~---~~-----------~~--~~~i~~~~~~~~~~~~~~~~~~~~~  183 (185)
                      .|....--+++..-...   ..           |.  -+=++-+...-++.++-.|++|-=|
T Consensus       272 ~ai~yvq~Ai~~s~~i~~~s~~plnh~~al~ivP~k~g~f~~yl~~hpkv~p~W~s~inh~f  333 (523)
T KOG2598|consen  272 GAIEYVQNAIAISCDITKGSVKPLNHVYALEIVPYKPGSFFNYLINHPKVKPKWDSYINHEF  333 (523)
T ss_pred             HHHHHHHHHHHhcCCcccCcCCcccchhheeecCCCcHHHHHHHhhCcccChhHHHHhhHHH
Confidence            99865544443322111   00           11  1333444556666677666666544

>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]

Probab=98.98  E-value=7.2e-09  Score=81.50  Aligned_cols=132  Identities=20%  Similarity=0.162  Sum_probs=88.2

Q ss_pred             cCCeEEEcCCCCC--CCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHH----HhcCCCCcEEEEEcCC
Q 029908            7 AGALLSYDPNLRL--PLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL----SLWHPNLKLLLVTLGE   80 (185)
Q Consensus         7 ~g~~v~~D~~~~~--~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~----~l~~~g~~~vvit~G~   80 (185)
                      .+..-++||.+..  .+|.+.+-...+-..+.+.+|+|+||.-|++.|+|....+.++++    .+...|++.||||...
T Consensus       111 p~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~EiLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~~  190 (308)
T KOG2599|consen  111 PNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSFD  190 (308)
T ss_pred             CCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhhhcCCeeccHHHHHHHHHHHHHhCCCEEEEEeee
Confidence            3556778996643  566644433434334555699999999999999999998877765    5666899999999854


Q ss_pred             C----ceEEEE-----cCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHh
Q 029908           81 H----GCRYYT-----KSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACG  143 (185)
Q Consensus        81 ~----G~~~~~-----~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~a  143 (185)
                      -    |..++.     +.+.+.+..|..+. -.+|.||.|+|-+++.+.+..+    .+++..+++.....-
T Consensus       191 ~~~~~g~~l~c~gs~~~~~~f~~~ipki~~-~FtGTGDLfsaLLla~~~~~~~----~~~l~~a~e~~ls~~  257 (308)
T KOG2599|consen  191 LGEFTGETLRCIGSSCGSERFRYLIPKIDG-VFTGTGDLFSALLLAWLHESPD----NDDLSKAVEQVLSSV  257 (308)
T ss_pred             eCCCCCcEEEEEEeccCCceEEEEecccce-EEecccHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHH
Confidence            3    322221     22444444444444 4589999999999988876531    123777777666443

>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []

Probab=98.44  E-value=9.1e-06  Score=64.25  Aligned_cols=128  Identities=20%  Similarity=0.111  Sum_probs=82.4

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhh--ccccEEEcCHHHHhHhhCCCCCC---------HH---HHHHhc
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIW--DKAEVIKVSDVELEFLTGSDKID---------DE---SALSLW   67 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l--~~~dii~~n~~E~~~l~~~~~~~---------~~---~~~~l~   67 (185)
                      +.|+++|+|++|||.....    .+...+...+++  -++++|+.|..|...|.+.....         .+   .++++-
T Consensus        73 ~~A~~~~~PvVLDPVgvGa----s~~R~~~~~~LL~~~~~~vIrGN~sEI~aLag~~~~~kGVDs~~~~~~~~~~a~~lA  148 (246)
T PF02110_consen   73 KAANELGIPVVLDPVGVGA----SKFRTEFALELLNNYKPTVIRGNASEIAALAGEDSKAKGVDSGDSDEDAIEAAKQLA  148 (246)
T ss_dssp             HHHHHTT--EEEE-TTBTT----BHHHHHHHHHHHCHS--SEEEEEHHHHHHHHTCCCCSCSSSSSCGSHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEeCcccCC----cHHHHHHHHHHHHhCCCcEEEeCHHHHHHHhCcCCCCCCcCcCCcchHHHHHHHHHH
Confidence            5688999999999975331    466677778888  47899999999999999875311         11   112232


Q ss_pred             CCCCcEEEEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHH
Q 029908           68 HPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANAC  142 (185)
Q Consensus        68 ~~g~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~  142 (185)
                      + ..+.+|+-.|+ -.++.++...+.++--..-.-.-||+|+.+.|.+++.+....+       +..+...|...
T Consensus       149 ~-k~~~vVvvTG~-~D~Isdg~~~~~i~nG~~~l~~itGtGC~lgaliaaf~av~~d-------~~~aa~~a~~~  214 (246)
T PF02110_consen  149 Q-KYNCVVVVTGE-VDYISDGNRVYRIPNGSPLLSKITGTGCMLGALIAAFLAVAED-------PLEAAVAAVAL  214 (246)
T ss_dssp             H-HTTSEEEEESS-SEEEEESSCEEEECSSSGGGGGSTTHHHHHHHHHHHHHCCCSS-------HHHHHHHHHHH
T ss_pred             H-hcCCEEEEecC-CcEEECCCeEEEeCCCChHhcceeccchHHHHHHHHHHhcccc-------chHHHHHHHHH
Confidence            2 22345555554 4455667777777666655666799999999988888877666       55555555543

Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....

>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]

Probab=98.33  E-value=1.7e-06  Score=72.85  Aligned_cols=132  Identities=16%  Similarity=0.188  Sum_probs=90.8

Q ss_pred             HHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhc-cccEEEcCHHHHhHhhCCCC----CC----H----HHH---HHhc
Q 029908            4 AKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWD-KAEVIKVSDVELEFLTGSDK----ID----D----ESA---LSLW   67 (185)
Q Consensus         4 a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~-~~dii~~n~~E~~~l~~~~~----~~----~----~~~---~~l~   67 (185)
                      ++++.++|+|.|..       .+.....++-++. .++.+.||..|+-.......    ++    .    +.+   +..+
T Consensus       446 ak~~k~~V~fEPTd-------~~k~~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~nps~~q~~~~~~~~~~~~~~k~  518 (614)
T KOG3009|consen  446 AKKHKKQVWFEPTD-------IDKVKKVFKTLLVGAITAISPNANELLKAAKLCHVSVNPSVIQTADGVLELIEKEKTKL  518 (614)
T ss_pred             hhhccCceEecCCC-------chhhhhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeChhhhccchHHHHHHHHHHHHh
Confidence            78899999999975       2334444443332 46999999999843222111    00    0    011   1233


Q ss_pred             CCCCcEEEEEcCCCceEEEEcCc-----eeEecCccc--ccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 029908           68 HPNLKLLLVTLGEHGCRYYTKSF-----KGAVDAFRV--KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFAN  140 (185)
Q Consensus        68 ~~g~~~vvit~G~~G~~~~~~~~-----~~~~~~~~~--~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~  140 (185)
                      .....++|+|...+|+++..++.     ....|++..  ++++..|+||+|+++++.+++++.+       +.+++.-+.
T Consensus       519 ~~~~s~~I~tl~~~G~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGdsf~~g~i~~l~~~~~-------v~es~~gg~  591 (614)
T KOG3009|consen  519 LLNTSIFIVTLANKGSLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGDSFNSGVIAGLAHNKT-------VVESLQGGQ  591 (614)
T ss_pred             hcccceEEEEeccCceEEEecCCCCCcccccCCCcccccceeEeccCCcccccceeehhhcCcc-------hHhhccccH
Confidence            35677899999999988776552     334455544  7899999999999999999999999       999999996


Q ss_pred             HHhHHHhhc
Q 029908          141 ACGALSTTK  149 (185)
Q Consensus       141 ~~aa~~~~~  149 (185)
                      .++..-+..
T Consensus       592 ~~~ralls~  600 (614)
T KOG3009|consen  592 ECARALLST  600 (614)
T ss_pred             HHHHHHHhc
Confidence            666555443

>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]

Probab=98.15  E-value=7.6e-05  Score=58.92  Aligned_cols=118  Identities=15%  Similarity=0.083  Sum_probs=76.9

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhcc--ccEEEcCHHHHhHhhCCCCC--------CHHHHH---HhcC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDK--AEVIKVSDVELEFLTGSDKI--------DDESAL---SLWH   68 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~--~dii~~n~~E~~~l~~~~~~--------~~~~~~---~l~~   68 (185)
                      +.|++.|.|+++||.....    .+...+...++|.+  .++|+.|..|...|.+....        ...+..   +...
T Consensus        79 ~~An~~~~PvvLDPVgvgA----t~~R~~~~~~LL~~~~~~~IrGN~sEI~~Lag~~~~~kGVDa~~~~~~~~~~a~~~A  154 (265)
T COG2145          79 KAANESGKPVVLDPVGVGA----TKFRTKFALELLAEVKPAAIRGNASEIAALAGEAGGGKGVDAGDGAADAIEAAKKAA  154 (265)
T ss_pred             HHHHhcCCCEEecCccCCc----hHHHHHHHHHHHHhcCCcEEeccHHHHHHHhcccccccccccccchhhHHHHHHHHH
Confidence            5788999999999975321    34566777777775  59999999999999865421        111221   2223


Q ss_pred             CCCcEEEEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCC
Q 029908           69 PNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQS  124 (185)
Q Consensus        69 ~g~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~  124 (185)
                      ...+.+++-.|+ =.++.++.+.+.+.-...-.-.-||+|+...|...+.+....+
T Consensus       155 ~~~~~vvvvTG~-vD~Isdg~~~~~i~nG~pll~~ItGtGCllgav~aaF~av~~d  209 (265)
T COG2145         155 QKYGTVVVVTGE-VDYISDGTRVVVIHNGSPLLGKITGTGCLLGAVVAAFLAVEKD  209 (265)
T ss_pred             HHhCcEEEEECC-eeEEEcCCeEEEEECCCcHHhhhhccccHHHHHHHHHHhcCCC
Confidence            333355555554 3445556665555444444445689999988888888876665

>PRK10565 putative carbohydrate kinase; Provisional

Probab=97.98  E-value=8.4e-05  Score=64.88  Aligned_cols=119  Identities=15%  Similarity=0.064  Sum_probs=74.4

Q ss_pred             HHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHh--hccccEEEcCHHHHhHhhCCCCCCHH-----HHHHhcCCCCcEEE
Q 029908            3 AAKEAGALLSYDPNLRLPLWPSPEEAREQIMSI--WDKAEVIKVSDVELEFLTGSDKIDDE-----SALSLWHPNLKLLL   75 (185)
Q Consensus         3 ~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~--l~~~dii~~n~~E~~~l~~~~~~~~~-----~~~~l~~~g~~~vv   75 (185)
                      .+++.++|+++|+..           ...+.+.  .....+|+||..|++.|++....+.+     .++++.+.....|+
T Consensus       342 ~~~~~~~P~VLDAda-----------L~ll~~~~~~~~~~VLTPh~gE~~rL~~~~~~~v~~~~~~~a~~~a~~~~~~vv  410 (508)
T PRK10565        342 KVENFRKPMLWDADA-----------LNLLAINPDKRHNRVITPHPGEAARLLGCSVAEIESDRLLSARRLVKRYGGVVV  410 (508)
T ss_pred             HHHhcCCCEEEEchH-----------HHHHhhCccccCCeEECCCHHHHHHHhCCChhhhhhhHHHHHHHHHHHhCCEEE
Confidence            456678999999963           1111110  11257999999999999985432211     12233333222444


Q ss_pred             EEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 029908           76 VTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANA  141 (185)
Q Consensus        76 it~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~  141 (185)
                      + .|. ..++.+.++...+........-+.|.||++++.+.+.++++.+       +.+|+..|+.
T Consensus       411 l-KG~-~~iI~~~~~~~~~~~~G~~~ma~~GsGDvLaGiIaalla~g~~-------~~~Aa~~a~~  467 (508)
T PRK10565        411 L-KGA-GTVIAAEPDALAIIDVGNAGMASGGMGDVLSGIIGALLGQKLS-------PYDAACAGCV  467 (508)
T ss_pred             E-eCC-CcEEEcCCceEEEECCCCCCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHH
Confidence            4 453 3455554444444444445556699999999999999999988       8888888873

>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase

Probab=97.71  E-value=0.00065  Score=53.84  Aligned_cols=142  Identities=16%  Similarity=0.124  Sum_probs=82.3

Q ss_pred             HHHHcCCeEEEcCCCCCCCCCChHHHHHHHHH---hhccccEEEcCHHHHhHhhCCCCC---CH-HHHHHhcCCCCcEEE
Q 029908            3 AAKEAGALLSYDPNLRLPLWPSPEEAREQIMS---IWDKAEVIKVSDVELEFLTGSDKI---DD-ESALSLWHPNLKLLL   75 (185)
Q Consensus         3 ~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~---~l~~~dii~~n~~E~~~l~~~~~~---~~-~~~~~l~~~g~~~vv   75 (185)
                      ...+...|+++|..-           ...+.+   ..+...+++|+.-|++.|++....   +. +.++++.+ ..+.+|
T Consensus        89 ~~~~~~~p~VlDADa-----------L~~l~~~~~~~~~~~IlTPH~gE~~rL~~~~~~~~~~~~~~a~~~a~-~~~~~v  156 (242)
T PF01256_consen   89 ELLESDKPLVLDADA-----------LNLLAENPKKRNAPVILTPHPGEFARLLGKSVEIQEDRIEAAREFAK-EYGAVV  156 (242)
T ss_dssp             HHHHHCSTEEEECHH-----------HHCHHHCCCCSSSCEEEE-BHHHHHHHHTTTCHHCCSHHHHHHHHHH-HHTSEE
T ss_pred             HHHhhcceEEEehHH-----------HHHHHhccccCCCCEEECCCHHHHHHHhCCcccchhhHHHHHHHHHh-hcCcEE
Confidence            344567889999741           122222   345678999999999999988762   11 11222222 122355


Q ss_pred             EEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHH----HhHHHhhccC
Q 029908           76 VTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANA----CGALSTTKKG  151 (185)
Q Consensus        76 it~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~----~aa~~~~~~g  151 (185)
                      +-.|..-.+...+++.+..+. .-.-.-+-|.||++++.+..-+.++.+       +.+++..|+.    ++-...+..|
T Consensus       157 vLKG~~t~I~~p~~~~~~n~~-gn~~la~gGsGDvLaGii~~llaq~~~-------~~~Aa~~av~lHg~Ag~~~~~~~~  228 (242)
T PF01256_consen  157 VLKGAVTIIASPGGRVYVNPT-GNPGLATGGSGDVLAGIIAGLLAQGYD-------PFEAACLAVYLHGRAGDLAAEKYG  228 (242)
T ss_dssp             EEESTSSEEEEETSEEEEE-----GGGSSTTHHHHHHHHHHHHHHHTSS-------HHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred             EEeCCCcEEEecCcceeEeCC-CCCCCCCCCcccHHHHHHHHHHHccCC-------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            555654443333444444433 345567789999999988888899998       8998888873    3333344444


Q ss_pred             CCCCCCCHHHHHHHHh
Q 029908          152 AIPALPTESEALALLK  167 (185)
Q Consensus       152 ~~~~~~~~~~i~~~~~  167 (185)
                      .  ++ ...+|.+.+.
T Consensus       229 ~--~~-~a~dli~~iP  241 (242)
T PF01256_consen  229 R--GM-LASDLIDNIP  241 (242)
T ss_dssp             S--C---HHHHHHHHH
T ss_pred             C--cC-cHHHHHHhcC
Confidence            3  33 5566655543

Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....

>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]

Probab=96.14  E-value=0.22  Score=40.40  Aligned_cols=93  Identities=18%  Similarity=0.108  Sum_probs=54.5

Q ss_pred             cEEEcCHHHHhHhhCCCCCCH-----HHHHHhcCCCCcEEEEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHH
Q 029908           40 EVIKVSDVELEFLTGSDKIDD-----ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGA  114 (185)
Q Consensus        40 dii~~n~~E~~~l~~~~~~~~-----~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~  114 (185)
                      -+++|+.-|++.|++....+.     +..+++. ...+.+|+=.|. ..++.+.+....+....-.-.-+-|.||++++-
T Consensus       154 ~VlTPH~gEf~rL~g~~~~~~~~~r~~~a~~~a-~~~~~vvVLKG~-~tvI~~~~g~~~~n~~G~~~ma~GGtGDvLaGi  231 (284)
T COG0063         154 VVLTPHPGEFARLLGTEVDEIEVDRLEAARELA-AKYGAVVVLKGA-VTVIADPDGEVFVNPTGNPGMATGGTGDVLAGI  231 (284)
T ss_pred             EEECCCHHHHHHhcCCcccccccchHHHHHHHH-HHcCCEEEEeCC-CCEEEcCCCcEEEcCCCCHHhccCcchHHHHHH
Confidence            788999999999998543321     2222333 333445555554 444454443344433333444567899998877


Q ss_pred             HHHHHHccCCCCCChHHHHHHHHHHH
Q 029908          115 LLCKIVDDQSAIEDEPRLREILKFAN  140 (185)
Q Consensus       115 ~~~~l~~g~~~~~~~~~~~~a~~~a~  140 (185)
                      +.+-|+++ ..     ++.+++..|+
T Consensus       232 i~alLAq~-~~-----~~~~Aa~~g~  251 (284)
T COG0063         232 IGALLAQG-PA-----DPLEAAAAGA  251 (284)
T ss_pred             HHHHHhCC-CC-----CHHHHHHHHH
Confidence            77777777 30     2556665555

>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]

Probab=95.65  E-value=0.086  Score=42.00  Aligned_cols=114  Identities=17%  Similarity=0.208  Sum_probs=66.5

Q ss_pred             ChHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCC--C-CHHHHHHhcCCCCcEEEEE
Q 029908            1 MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDK--I-DDESALSLWHPNLKLLLVT   77 (185)
Q Consensus         1 l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~--~-~~~~~~~l~~~g~~~vvit   77 (185)
                      +++++++++|+++|...   +|=- .+..+.+..-. ..-+++||.-|+..|.+...  . ....+.+|...-....++-
T Consensus       125 ley~~~~dvP~VIDaDG---L~Lv-~q~~e~l~~~~-~~viLTPNvvEFkRLcd~~l~~~d~~~~~~~L~~~l~nv~vvq  199 (306)
T KOG3974|consen  125 LEYLRGKDVPLVIDADG---LWLV-EQLPERLIGGY-PKVILTPNVVEFKRLCDAELDKVDSHSQMQHLAAELMNVTVVQ  199 (306)
T ss_pred             HHHHhcCCCcEEEcCCc---eEeh-hhchhhhhccC-ceeeeCCcHHHHHHHHHHhhccccchHHHHHHHHHhcCeEEEE
Confidence            46788999999999853   3431 11122122211 22688999999999987632  1 1222223333234457777


Q ss_pred             cCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHH
Q 029908           78 LGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV  120 (185)
Q Consensus        78 ~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~  120 (185)
                      .|..-.++..+.+.+.++. +-....-=|=||.+++.+..-+.
T Consensus       200 KG~~D~ils~~~ev~~~s~-eGs~kRcGGQGDiLaGsla~fl~  241 (306)
T KOG3974|consen  200 KGESDKILSPDSEVRVCST-EGSLKRCGGQGDILAGSLATFLS  241 (306)
T ss_pred             ecCCceeeCCCCeeEEccC-CCCccccCCCcchhhhHHHHHHH
Confidence            7776665555555555444 23333445679999888776553

>PRK14038 ADP-dependent glucokinase; Provisional

Probab=88.72  E-value=3  Score=36.14  Aligned_cols=115  Identities=20%  Similarity=0.243  Sum_probs=72.0

Q ss_pred             HHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCC-------------CCHHHH----HHhc
Q 029908            5 KEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDK-------------IDDESA----LSLW   67 (185)
Q Consensus         5 ~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~-------------~~~~~~----~~l~   67 (185)
                      ++.+++|-+...+..     ....++.+.+++|++|-+-+|++|+..+...-.             ....+.    .+|+
T Consensus       256 ~~~~i~iH~EfAs~~-----d~~~r~~i~~ilp~vDSlGmNE~ELa~ll~~lg~~~l~~~i~~~~~~~~~~v~e~~~~L~  330 (453)
T PRK14038        256 NERGIPAHLEFAFTP-----DETVREEILGLLGKFYSVGLNEVELASIMEVMGEKTLAEKLLAKDPVDPIAVTEAMLKLA  330 (453)
T ss_pred             CcCCceEEEEeeccc-----hHHHHHHHHhhCccccccccCHHHHHHHHHHhccchhhhhhhhcCccCHHHHHHHHHHHH
Confidence            346788888876432     344555666899999999999999998875111             122222    2444


Q ss_pred             C-CCCcEEEEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHH
Q 029908           68 H-PNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALS  146 (185)
Q Consensus        68 ~-~g~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~  146 (185)
                      + .|.+.+.+..  .+-+++--+.                              ++..       +.+|+.+|..+|+..
T Consensus       331 ~~~gleri~vHT--~~y~l~i~~~------------------------------~~~~-------~~~aL~f~~~~Aaar  371 (453)
T PRK14038        331 EKTGVKRIHFHT--YGYYLALTKY------------------------------RGEH-------VRDALLFAALAAAAK  371 (453)
T ss_pred             HHcCCCEEEEEe--cceeEEEecC------------------------------CHHH-------HHHHHHHHHHHHHHH
Confidence            3 5777766653  3333332111                              3444       899999999999888


Q ss_pred             hhccCCCCCCCCHHHHHHHHh
Q 029908          147 TTKKGAIPALPTESEALALLK  167 (185)
Q Consensus       147 ~~~~g~~~~~~~~~~i~~~~~  167 (185)
                      .. .|..   .++++++.-++
T Consensus       372 A~-~G~i---~~~~d~~~~l~  388 (453)
T PRK14038        372 AM-LGNI---EKIDDVRKALD  388 (453)
T ss_pred             HH-cCCC---CCHHHHHHHhc
Confidence            75 5544   56777776543

>PRK14039 ADP-dependent glucokinase; Provisional

Probab=86.76  E-value=9.4  Score=33.15  Aligned_cols=68  Identities=19%  Similarity=0.187  Sum_probs=46.8

Q ss_pred             cCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCC--------CHHH----HHHhcC-CCCcE
Q 029908            7 AGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI--------DDES----ALSLWH-PNLKL   73 (185)
Q Consensus         7 ~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~--------~~~~----~~~l~~-~g~~~   73 (185)
                      .+++|-+...+.    ++.+-....+..++|++|-+=+|++|+..+.+.-..        +.++    +.++++ .|.+.
T Consensus       251 ~~i~iH~E~As~----~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g~~~~~i~~~~~~~v~ea~~~l~~~~~le~  326 (453)
T PRK14039        251 EKLRIHAELGHF----ASKEIANSVFLILAGIVDSIGMNEDELAMLANLHGIPAEGILEMNAEAIGEAACQLASESGLQR  326 (453)
T ss_pred             CCceEEEEecCc----ccHHHHHHHHHHhhcccccccCCHHHHHHHHHHcccchhhHhhcCHHHHHHHHHHHHHHcCCCE
Confidence            567888887643    346677778888999999999999999988765221        1111    224443 68877


Q ss_pred             EEEEc
Q 029908           74 LLVTL   78 (185)
Q Consensus        74 vvit~   78 (185)
                      ++|..
T Consensus       327 l~vHT  331 (453)
T PRK14039        327 LIIHT  331 (453)
T ss_pred             EEEEe
Confidence            77654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
3ljs_A	338	Crystal Structure Of Fructokinase From Xylella Fast		4e-23
1tz6_A	339	Crystal Structure Of Aminoimidazole Riboside Kinase		2e-16
1tyy_A	339	Crystal Structure Of Aminoimidazole Riboside Kinase		3e-15
3ry7_A	304	Crystal Sructure Of Sa239 Length = 304		4e-12
3iq0_A	330	Crystal Structure Of A Putative Ribokinase Ii In Co		8e-12
3ewm_A	313	Crystal Structure Of An Uncharacterized Sugar Kinas		2e-11
4du5_A	336	Crystal Structure Of Pfkb Protein From Polaromonas		9e-11
3hj6_A	327	Structure Of Halothermothrix Orenii Fructokinase (F		3e-10
3gbu_A	313	Crystal Structure Of An Uncharacterized Sugar Kinas		4e-10
1rk2_A	309	E. Coli Ribokinase Complexed With Ribose And Adp, S		2e-09
3pl2_A	319	Crystal Structure Of A 5-Keto-2-Deoxygluconokinase		1e-08
2v78_A	313	Crystal Structure Of Sulfolobus Solfataricus 2-Keto		3e-08
2qhp_A	296	Crystal Structure Of Fructokinase (Np_810670.1) Fro		4e-08
1vm7_A	311	Crystal Structure Of Ribokinase (Tm0960) From Therm		4e-08
1v19_A	309	2-Keto-3-Deoxygluconate Kinase From Thermus Thermop		3e-07
2fv7_A	331	Crystal Structure Of Human Ribokinase Length = 331		4e-06
2dcn_A	311	Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase		9e-06
3b1r_A	320	Structure Of Burkholderia Thailandensis Nucleoside		5e-05
3b1n_A	326	Structure Of Burkholderia Thailandensis Nucleoside		5e-05
4e69_A	328	Crystal Structure Of A Sugar Kinase (Target Efi-502		2e-04
3kd6_A	313	Crystal Structure Of Nucleoside Kinase From Chlorob		3e-04
3h49_A	325	Crystal Structure Of A Putative Ribokinase (Apo For		3e-04
4gm6_A	351	Crystal Structure Of Pfkb Family Carbohydrate Kinas		4e-04
2c49_A	302	Crystal Structure Of Methanocaldococcus Jannaschii		6e-04
3go6_A	310	Crystal Structure Of M. Tuberculosis Ribokinase (Rv		6e-04

>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa Length = 338

Iteration: 1
 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 97/177 (54%), Gaps = 8/177 (4%)
Query: 2   KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE 61
           + A+ AGA++S+D N R  LWP+ E    ++      A+V+K+S  EL++L  +   D  
Sbjct: 154 RRAQAAGAIVSFDLNFRPXLWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAADAN 213
Query: 62  SALS-LWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALL---C 117
           + +  LW    +LLLVT       +YT++  G V  FRV+  D+  AGDAFVG  L    
Sbjct: 214 AVIQQLWQGRAQLLLVTDAAGPVHWYTRTAGGEVPTFRVQVQDSNAAGDAFVGGXLYTFA 273
Query: 118 KIVDDQSAI----EDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRST 170
           +  DD +A+     D   +   L+FA A GAL+ T++GA  A P  SE L+L++  +
Sbjct: 274 QQFDDAAALIDFCHDPESIVSTLRFAAAVGALAVTRQGAFTAXPXLSEVLSLIQEQS 330

>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From Salmonella Enterica Complexed With Aminoimidazole Riboside And Atp Analog Length = 339

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 5   KEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL 64
           +EAG  + +D NLR  +W + +E  E I      A + KVS  EL  L+G+    D +  
Sbjct: 169 REAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQD-ARY 227
Query: 65  SLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQS 124
            L        +++LG  G    T   +    A RV  VDTTGAGDAFVG LL  +   ++
Sbjct: 228 YLRDLGCDTTIISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTL--SRA 285
Query: 125 AIEDEPRLREILKFANACGALSTTKKGAIPALP 157
              D   L E +  ANACGA++ T KGA+ ALP
Sbjct: 286 NCWDHALLAEAISNANACGAMAVTAKGAMTALP 318

>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From Salmonella Enterica Length = 339

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
Query: 2   KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE 61
           +  +EAG  + +D NLR   W + +E  E I      A + KVS  EL  L+G+    D 
Sbjct: 166 RRXREAGGYVLFDVNLRSKXWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQD- 224
Query: 62  SALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVD 121
           +   L        +++LG  G    T   +    A RV  VDTTGAGDAFVG LL  +  
Sbjct: 225 ARYYLRDLGCDTTIISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTL-- 282
Query: 122 DQSAIEDEPRLREILKFANACGALSTTKKGAIPALP 157
            ++   D   L E +  ANACGA + T KGA  ALP
Sbjct: 283 SRANCWDHALLAEAISNANACGAXAVTAKGAXTALP 318

>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239 Length = 304

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 14/142 (9%)
Query: 21  LWPSPEEAR-EQIMSIWDKAEVIKVSDVELEFLTGSDKIDDES----ALSLWHPNLKLLL 75
           L P+P +A   +++S+ D   +I  ++ E E L+G    +++S    A       +K +L
Sbjct: 164 LNPAPAKALPNELLSLID---IIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVL 220
Query: 76  VTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREI 135
           +TLG+ G  + TK+    ++A++V  +DTT AGD F+GA + ++   Q        L + 
Sbjct: 221 ITLGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGAFVSRLNKSQD------NLADA 274
Query: 136 LKFANACGALSTTKKGAIPALP 157
           + F N   +L+  K GA  ++P
Sbjct: 275 IDFGNKASSLTVQKHGAQASIP 296

>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex With Atp And Mg+2 From E.Coli Length = 330

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 5   KEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL 64
           K  G ++S+DPN+R      PE  R+ +  + +  ++   S+ E+  L+      + +  
Sbjct: 158 KANGGVISFDPNIRKEXLDIPE-XRDALHFVLELTDIYXPSEGEVLLLS-PHSTPERAIA 215
Query: 65  SLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGA-LLCKIVDDQ 123
                 +K ++V  G  G  YY+ + +  V+++ V+ VD TGAGD F GA + C+ +   
Sbjct: 216 GFLEEGVKEVIVKRGNQGASYYSANEQFHVESYPVEEVDPTGAGDCFGGAWIACRQLGFD 275
Query: 124 SAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
           +           L++ANACGAL+ T++G         E    ++R
Sbjct: 276 A--------HRALQYANACGALAVTRRGPXEGTSRLXEIETFIQR 312

>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase Ph1459 From Pyrococcus Horikoshii Length = 313

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 76/152 (50%), Gaps = 23/152 (15%)
Query: 6   EAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALS 65
           +  +L+++D NLRL LW   EE   +++      E IK++D+         K  +E  L 
Sbjct: 152 KGSSLIAFDVNLRLDLWRGQEEEXIKVLE-----ESIKLADIV--------KASEEEVLY 198
Query: 66  LWHPNLK-----LLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           L +  ++     L  +TLG  GCR         V ++ V  +DTTGAGDAF  ALL  I+
Sbjct: 199 LENQGVEVKGSXLTAITLGPKGCRLIKNETVVDVPSYNVNPLDTTGAGDAFXAALLVGIL 258
Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGA 152
             +        L ++ KFAN   ALST K+GA
Sbjct: 259 KLKGL-----DLLKLGKFANLVAALSTQKRGA 285

>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp. Js666 Length = 336

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 9/158 (5%)
Query: 5   KEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL 64
           + AG  +S+DPNLR  LW +PE  R+ I  +  +A+ +     E  FLTG +   +  A 
Sbjct: 181 RAAGRSVSFDPNLRPTLWATPELXRDAINDLATRADWVLPGXEEGRFLTG-ETTPEGVAR 239
Query: 65  SLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV-KTVDTTGAGDAFVGALLCKIVDDQ 123
                  KL++V LG  G  +  ++  G V  F V + VDT GAGD F   ++  ++D  
Sbjct: 240 FYRQLGAKLVVVKLGAEGAYFDGEAGSGRVAGFPVAEVVDTVGAGDGFAVGVISALLDGL 299
Query: 124 SAIEDEPRLREILKFANACGALSTTKKGAIPALPTESE 161
                   + E +K     GA +    G    LPT +E
Sbjct: 300 G-------VPEAVKRGAWIGARAVQVLGDSEGLPTRAE 330

>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk) Length = 327

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 8/160 (5%)
Query: 4   AKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA 63
           A+E G ++ +DP  R  LWP  ++    +  I  +A+ +K S  +   L G D  ++   
Sbjct: 171 AREQGKIVCFDPCYRKVLWPEGDDGAGVVEEIISRADFVKPSLDDARHLFGPDSPENYVK 230
Query: 64  LSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQ 123
             L    +K +++TLGE G           + AF    VD TGAGDAF    +C ++D  
Sbjct: 231 RYL-ELGVKAVILTLGEEGVIASDGEEIIRIPAFSEDAVDVTGAGDAFWSGFICGLLDGY 289
Query: 124 SAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEAL 163
           +       ++  +K  N   A      GA+  +P++ + +
Sbjct: 290 T-------VKRSIKLGNGVAAFKIRGVGALSPVPSKEDII 322

>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase Ph1459 From Pyrococcus Horikoshii In Complex With Atp Length = 313

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 23/152 (15%)
Query: 6   EAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALS 65
           +  +L+++D NLRL LW   EE   +++      E IK++D+         K  +E  L 
Sbjct: 152 KGSSLIAFDVNLRLDLWRGQEEEXIKVLE-----ESIKLADIV--------KASEEEVLY 198
Query: 66  LWHPNLK-----LLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           L +  ++     L  +TLG  G R         V ++ V  +DTTGAGDAF  ALL  I+
Sbjct: 199 LENQGVEVKGSXLTAITLGPKGFRLIKNETVVDVPSYNVNPLDTTGAGDAFXAALLVGIL 258
Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGA 152
             +        L ++ KFAN   ALST K+GA
Sbjct: 259 KLKGL-----DLLKLGKFANLVAALSTQKRGA 285

>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved In Space Group P212121 Length = 309

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 7   AGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE----S 62
           A A +++     + L P+P  ARE    +    ++I  ++ E E LTG    +DE    +
Sbjct: 151 AAAKIAHQNKTIVALNPAP--ARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKA 208
Query: 63  ALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDD 122
           A  L    ++ +L+TLG  G           V  FRV+ VDT  AGD F GAL+  +   
Sbjct: 209 AQVLHEKGIRTVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITAL--- 265
Query: 123 QSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
              +E++P L E ++FA+A  A++ T+KGA P++P   E  A L R
Sbjct: 266 ---LEEKP-LPEAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDR 307

>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase (Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc 13032 Kitasato At 1.89 A Resolution Length = 319

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 13  YDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLK 72
           +D + R   W SPEEA +Q       + V   +  E E   G  +  + +  +L    ++
Sbjct: 170 FDLDYRPXFWESPEEATKQAEWALQHSTVAVGNKEECEIAVGETE-PERAGRALLERGVE 228
Query: 73  LLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRL 132
           L +V  G  G    TK     V  F V  ++  GAGDAF GAL   ++ +         L
Sbjct: 229 LAIVKQGPKGVXAXTKDETVEVPPFFVDVINGLGAGDAFGGALCHGLLSEWP-------L 281
Query: 133 REILKFANACGALSTTKKGAIPALPTESEALALLKR 168
            ++L+FAN  GAL  ++     A PT  E  A L +
Sbjct: 282 EKVLRFANTAGALVASRLECSTAXPTTDEVEASLNQ 317

>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3- Deoxygluconate Kinase Length = 313

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 12  SYDPNLRLPLWPSPEEAREQIMSIWDKAEV-IKVSDVELEFLTGSDKIDDESALSLWHPN 70
           S D N+R  LW S E+A+E I+SI  K ++ + ++D +   +       DE+        
Sbjct: 160 SLDTNIRPKLWSSLEKAKETILSILKKYDIEVLITDPDDTKILLDVTDPDEAYRKYKELG 219
Query: 71  LKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLC 117
           +K+LL  LG  G   Y  + K   DA++V   D TGAGDA  G  + 
Sbjct: 220 VKVLLYKLGSKGAIAYKDNVKAFKDAYKVPVEDPTGAGDAMAGTFVS 266

>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A Resolution Length = 296

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 17/156 (10%)
Query: 8   GALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLT---GSDKID--DES 62
           G L  +D NLR   +      +E +   + +  ++K++D EL  ++   G   ID  D+ 
Sbjct: 146 GQLKIFDINLRQDFY-----TKEVLRESFKRCNILKINDEELVTISRXFGYPGIDLQDKC 200
Query: 63  ALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDD 122
            + L   NLK L++T G +G   +T       +  +V   DT GAGD+F  A    I++ 
Sbjct: 201 WILLAKYNLKXLILTCGINGSYVFTPGVVSFQETPKVPVADTVGAGDSFTAAFCASILNG 260
Query: 123 QSAIEDEPRLREILKFANACGALSTTKKGAIPALPT 158
           +S       + E  K A    A   T+ GA P LP 
Sbjct: 261 KS-------VPEAHKLAVEVSAYVCTQSGAXPELPV 289

>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga Maritima At 2.15 A Resolution Length = 311

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 50  EFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGD 109
           EFLT      +++A       +K ++V LG+ G     K+ K     F+VK VDTT AGD
Sbjct: 204 EFLT-----VEKAAEKFLELGVKNVIVKLGDKGVLLVNKNEKKHFPTFKVKAVDTTAAGD 258
Query: 110 AFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
            F GA          A+ +     E + F  A  A+S T+ GA  ++P   E  A LK 
Sbjct: 259 VFNGAFAV-------ALSEGKNPEEAVIFGTAAAAISVTRLGAQSSIPAREEVEAFLKN 310

>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus Length = 309

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AK  G  +S D N R  LW SPEEAR  +       +++ +S+ E E L G     +
Sbjct: 150 MEEAKRRGVRVSLDVNYRQTLW-SPEEARGFLERALPGVDLLFLSEEEAELLFGRV---E 205
Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           E+  +L  P + L     G  G   +    +    AF V+ VD  GAGDAF    L    
Sbjct: 206 EALRALSAPEVVL---KRGAKGAWAFVDGRRVEGSAFAVEAVDPVGAGDAFAAGYLA--- 259
Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
               A+   P + E L+ AN  GA     +G     P   +   LLK
Sbjct: 260 ---GAVWGLP-VEERLRLANLLGASVAASRGDHEGAPYREDLEVLLK 302

>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase Length = 331

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 36  WDKAEVIKVSDVELEFLTG----SDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFK 91
           +  ++V   ++ E E LTG    S     E+AL L     +++++TLG  GC   +++  
Sbjct: 199 YTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEP 258
Query: 92  --GAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTK 149
               +   +VK VDTTGAGD+FVGAL   +     A      L ++L  +N   A+S   
Sbjct: 259 EPKHIPTEKVKAVDTTGAGDSFVGALAFYL-----AYYPNLSLEDMLNRSNFIAAVSVQA 313
Query: 150 KGAIPALP 157
            G   + P
Sbjct: 314 AGTQSSYP 321

>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed With 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 24/164 (14%)
Query: 12  SYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFL---TGSDKI-----DDESA 63
           S+D N+RL LW S EEA+ +I+ +        +S   L+FL   T   KI     D + A
Sbjct: 160 SFDTNIRLKLW-SAEEAKREILKL--------LSKFHLKFLITDTDDSKIILGESDPDKA 210
Query: 64  LSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQ 123
              +    +++++ LG  G   Y    K     ++V   D TGAGDA  G  L       
Sbjct: 211 AKAFSDYAEIIVMKLGPKGAIVYYDGKKYYSSGYQVPVEDVTGAGDALGGTFL------- 263
Query: 124 SAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
           S       + + L +A     L+   +G    LPT  +    L+
Sbjct: 264 SLYYKGFEMEKALDYAIVASTLNVMIRGDQENLPTTKDIETFLR 307

>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase (Bthnk) In Complex With Amp-Mg-Amp Length = 320

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 23/160 (14%)
Query: 6   EAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI---DDES 62
           +AG    +DP   LPL+      R   ++ +     I V+D E + +   DK    +DE 
Sbjct: 166 QAGVPFIFDPGQGLPLFDGATLRRSIELATY-----IAVNDYEAKLV--CDKTGWSEDEI 218
Query: 63  ALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV-KTVDTTGAGDAFVGALLCKIVD 121
           A       ++ L++T GEHG     +     + A R  + +D TG GDAF G LL     
Sbjct: 219 A-----SRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLL----- 268
Query: 122 DQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESE 161
               IE         + A+  GAL    +G     PT +E
Sbjct: 269 --YGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAE 306

>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase (Bthnk) In Complex With Adp-Mizoribine Length = 326

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 23/160 (14%)
Query: 6   EAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI---DDES 62
           +AG    +DP   LPL+      R   ++ +     I V+D E + +   DK    +DE 
Sbjct: 158 QAGVPFIFDPGQGLPLFDGATLRRSIELATY-----IAVNDYEAKLV--CDKTGWSEDEI 210
Query: 63  ALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV-KTVDTTGAGDAFVGALLCKIVD 121
           A       ++ L++T GEHG     +     + A R  + +D TG GDAF G LL     
Sbjct: 211 A-----SRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLL----- 260
Query: 122 DQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESE 161
               IE         + A+  GAL    +G     PT +E
Sbjct: 261 --YGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAE 298

>pdb|4E69|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus, Unliganded Structure Length = 328

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 12/129 (9%)
Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTG-----S 55
           +  A+  G  +++DPNLR  LW    E  E IM      +   VSD+ L           
Sbjct: 171 LAQARATGRTIAFDPNLRPRLWAGTGEMTETIM------QGAAVSDIALPSFEDEAAWFG 224
Query: 56  DKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKG-AVDAFRVKTVDTTGAGDAFVGA 114
           D   D +A       ++ ++V  G H   +     +G        + VDTT AGD+F   
Sbjct: 225 DAGPDATADRYARAGVRSVVVKNGPHAVHFLQDGRRGRVPVPPVAQVVDTTAAGDSFNAG 284
Query: 115 LLCKIVDDQ 123
           LL  ++  Q
Sbjct: 285 LLDSVLAGQ 293

>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium Tepidum In Complex With Amp Length = 313

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 30  EQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKS 89
           E++  +  + +V  V+D E   L+G   +  ++A  +     K L++  GEHG   +T +
Sbjct: 160 EELKKVLARVDVFIVNDSEARLLSGDPNLV-KTARIIREXGPKTLIIKKGEHGALLFTDN 218
Query: 90  FKGAVDAFRVKTV-DTTGAGDAFVGALLCKIVDDQSAIEDEPR 131
              A  AF ++++ D TGAGD F G  +  +    +  E E R
Sbjct: 219 GIFAAPAFPLESIYDPTGAGDTFAGGFIGHLARCGNTSEAEXR 261

>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From E.Coli At 1.8a Resolution Length = 325

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 48  ELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFR-VKTVDTTG 106
           E + LTG + +D E A       +K +++  G+ GC          V A   +  +DT G
Sbjct: 201 EAKLLTGKETLD-EIADCFLACGVKTVVIKTGKDGCFIKRGDXTXKVPAVAGITAIDTIG 259
Query: 107 AGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGA 152
           AGD F    +       +A+ +   LRE  +FANA  A+S    GA
Sbjct: 260 AGDNFASGFI-------AALLEGKNLRECARFANATAAISVLSVGA 298

>pdb|4GM6|A Chain A, Crystal Structure Of Pfkb Family Carbohydrate Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601 Length = 351

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 19/164 (11%)
Query: 1   MKAAKEAGALLSYDPNLRLPLW--PSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI 58
           ++ AK  G  +S+D N R  LW   + + A +Q++ + D     ++  V   F   S+  
Sbjct: 175 IREAKRNGIKISFDMNYRAKLWELEAAKRAYQQLLPLVDYCSAGQMDAVAF-FEISSETT 233
Query: 59  DDESALSLWHPNLKLL------LVTLGEH--GCRYYTKSFKGAVDAFRVK-TVDTTGAGD 109
           D   A+   +PN++L       +++   H      +T+      + + +   VD  G GD
Sbjct: 234 DYYQAMHDKYPNIELFYATKRTVISASHHLLQGHLWTQGECWESEEYAIYPIVDRVGGGD 293
Query: 110 AFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAI 153
           A+  A+L  I+        E R  E +KFA A   L  +  G I
Sbjct: 294 AYTAAVLHGIL-------SEWRPDETVKFATAAAGLKHSIHGDI 330

>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii Nucleoside Kinase - An Archaeal Member Of The Ribokinase Family Length = 302

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 23/176 (13%)
Query: 1   MKAAKEA--GALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTG--SD 56
           +K AK+A    L+S+DP   LP +     ++E ++ I +    + ++  E E  +   + 
Sbjct: 145 LKCAKKAYGNNLVSFDPGQDLPQY-----SKEMLLEIIEHTNFLFMNKHEFERASNLLNF 199
Query: 57  KIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV-KTVDTTGAGDAFVGAL 115
           +IDD      +   +  L+VT G  G   YTK  K  +   +  K +D TGAGD++    
Sbjct: 200 EIDD------YLERVDALIVTKGSKGSVIYTKDKKIEIPCIKAGKVIDPTGAGDSYRAGF 253
Query: 116 LCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTI 171
           L   V           L +      A  +     KG    LPT  + +  L++  I
Sbjct: 254 LSAYVKGYD-------LEKCGLIGAATASFVVEAKGCQTNLPTWDKVVERLEKHRI 302

>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436) In Complex With Ribose And Amp-Pnp Length = 310

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 58  IDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLC 117
           I +E   + W       ++TLG  G RY        V A  V  VDT GAGD F G L  
Sbjct: 197 IANEHEANDWPSPPTHFVITLGVRGARYVGADGVFEVPAPTVTPVDTAGAGDVFAGVLAA 256
Query: 118 KIVDDQSAIEDEPRLREILKFANACGALSTTKKG 151
               +  +  +  RLR  L+ A A GAL+T   G
Sbjct: 257 NWPRNPGSPAE--RLRA-LRRACAAGALATLVSG 287

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
3ljs_A	338	Fructokinase; fructokianse, PSI2, NYSGXRC, structu	3e-73
1tyy_A	339	Putative sugar kinase; ribokinase fold, alpha/beta	1e-71
3pl2_A	319	Sugar kinase, ribokinase family; PFKB PFAM motif,	2e-70
2qcv_A	332	Putative 5-dehydro-2-deoxygluconokinase; structura	7e-69
3iq0_A	330	Putative ribokinase II; transferase,kinase,SAD,rib	1e-68
3hj6_A	327	Fructokinase, FRK; fructose, transferase, carbohyd	3e-68
4du5_A	336	PFKB; structural genomics, PSI-biology, NEW YORK s	6e-63
4e69_A	328	2-dehydro-3-deoxygluconokinase; putative sugar kin	4e-62
2v78_A	313	Fructokinase; transferase, PFKB family carbohydrat	4e-62
2qhp_A	296	Fructokinase; NP_810670.1, PFKB family carbohydrat	1e-61
2dcn_A	311	Hypothetical fructokinase; 2-keto-3-deoxygluconate	9e-61
3ewm_A	313	Uncharacterized sugar kinase PH1459; carbohydrate	1e-59
1v1a_A	309	2-keto-3-deoxygluconate kinase; ATP, structural ge	3e-59
3h49_A	325	Ribokinase; transferase,PFKB family,sugar kinase Y	2e-57
3lhx_A	319	Ketodeoxygluconokinase; structural genomics, PSI-2	5e-57
2afb_A	351	2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-	4e-43
3ktn_A	346	Carbohydrate kinase, PFKB family; PFKB family,ribo	4e-42
2c4e_A	302	Sugar kinase MJ0406; transferase, nucleoside kinas	8e-39
3kzh_A	328	Probable sugar kinase; NYSGXRC, PSI-II, protein st	3e-38
1vm7_A	311	Ribokinase; TM0960, structural genomics, JCSG, pro	1e-37
1rkd_A	309	Ribokinase; carbohydrate kinase, ribose, nucleotid	1e-36
3ry7_A	304	Ribokinase; transferase; 2.15A {Staphylococcus aur	2e-35
2rbc_A	343	Sugar kinase, AGR_C_4560P; ribokinase family, ATP-	3e-35
2nwh_A	317	AGR_C_3442P, carbohydrate kinase; structural genom	5e-34
3go6_A	310	Ribokinase RBSK; phosphofructokinase, carbohydrate	3e-33
3b1n_A	326	Ribokinase, putative; rossmann fold, ATP binding,	1e-32
3ikh_A	299	Carbohydrate kinase; transferase,kinase,SAD,ribose	6e-32
2fv7_A	331	Ribokinase; structural genomics, structural genomi	2e-31
2pkf_A	334	Adenosine kinase; transferase, S genomics, TB stru	4e-29
3kd6_A	313	Carbohydrate kinase, PFKB family; nucleoside kinas	5e-29
3bf5_A	306	Ribokinase related protein; 10640157, putative rib	9e-29
2hlz_A	312	Ketohexokinase; non-protein kinase, creatine kinas	2e-28
1vk4_A	298	PFKB carbohydrate kinase TM0415; structural genomi	1e-27
3ie7_A	320	LIN2199 protein; phosphofructokinases, transferase	3e-14
3cqd_A	309	6-phosphofructokinase isozyme 2; phosphofructokina	9e-13
2f02_A	323	Tagatose-6-phosphate kinase; LACC, structural geno	2e-12
2jg5_A	306	Fructose 1-phosphate kinase; 1-phosphofructokinase	3e-12
2jg1_A	330	Tagatose-6-phosphate kinase; phosphoryl transfer,	3e-12
2abq_A	306	Fructose 1-phosphate kinase; dimer, structural gen	5e-12
4e3a_A	352	Sugar kinase protein; structural genomics, protein	3e-11
2ajr_A	331	Sugar kinase, PFKB family; TM0828, possible 1-phos	3e-10
3otx_A	347	Adenosine kinase, putative; AP5A, transferase-tran	4e-09
1bx4_A	345	Protein (adenosine kinase); human adenosine kinase	2e-08
3loo_A	365	Anopheles gambiae adenosine kinase; AP4A, P4-DI(ad	4e-08
2abs_A	383	Adenosine kinase, AK; ribokinase fold, alpha/beta,	8e-08

>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} PDB: 3lki_A* Length = 338

 Score =  223 bits (570), Expect = 3e-73
 Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 8/178 (4%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ A+ AGA++S+D N R  LWP+ E    ++      A+V+K+S  EL++L  +   D 
Sbjct: 153 MRRAQAAGAIVSFDLNFRPMLWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAADA 212

Query: 61  ESAL-SLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKI 119
            + +  LW    +LLLVT       +YT++  G V  FRV+  D+  AGDAFVG +L   
Sbjct: 213 NAVIQQLWQGRAQLLLVTDAAGPVHWYTRTAGGEVPTFRVQVQDSNAAGDAFVGGMLYTF 272

Query: 120 VDD-------QSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRST 170
                          D   +   L+FA A GAL+ T++GA  A+P  SE L+L++  +
Sbjct: 273 AQQFDDAAALIDFCHDPESIVSTLRFAAAVGALAVTRQGAFTAMPMLSEVLSLIQEQS 330

>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A* Length = 339

 Score =  219 bits (559), Expect = 1e-71
 Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 3/171 (1%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
            +  +EAG  + +D NLR  +W + +E  E I      A + KVS  EL  L+G+     
Sbjct: 165 ARRMREAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGASHW-Q 223

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           ++   L        +++LG  G    T   +    A RV  VDTTGAGDAFVG LL  + 
Sbjct: 224 DARYYLRDLGCDTTIISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTLS 283

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTI 171
             ++   D   L E +  ANACGA++ T KGA+ ALP   +    L   ++
Sbjct: 284 --RANCWDHALLAEAISNANACGAMAVTAKGAMTALPFPDQLNTFLSSHSL 332

>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} Length = 319

 Score =  215 bits (549), Expect = 2e-70
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 8/168 (4%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           +   +       +D + R   W SPEEA +Q       + V   +  E E   G  + + 
Sbjct: 158 ILTTRANRRHTIFDLDYRPMFWESPEEATKQAEWALQHSTVAVGNKEECEIAVGETEPE- 216

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
            +  +L    ++L +V  G  G    TK     V  F V  ++  GAGDAF GAL   ++
Sbjct: 217 RAGRALLERGVELAIVKQGPKGVMAMTKDETVEVPPFFVDVINGLGAGDAFGGALCHGLL 276

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
            +         L ++L+FAN  GAL  ++     A+PT  E  A L +
Sbjct: 277 SEWP-------LEKVLRFANTAGALVASRLECSTAMPTTDEVEASLNQ 317

>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125} Length = 332

 Score =  211 bits (540), Expect = 7e-69
 Identities = 37/175 (21%), Positives = 83/175 (47%), Gaps = 10/175 (5%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           ++ AK     + ++ + R   W +PEE       + ++++++  +  E + L    +  D
Sbjct: 162 IRLAKRNDVKVVFELDYRPYSWETPEETAVYYSLVAEQSDIVIGTREEFDVLENRTEKGD 221

Query: 61  --ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKG-AVDAFRVKTVDTTGAGDAFVGALLC 117
             E+   L+  + +L+++  G  G   YTK+ +     A++ K + T GAGD++  A L 
Sbjct: 222 NDETIRYLFKHSPELIVIKHGVEGSFAYTKAGEAYRGYAYKTKVLKTFGAGDSYASAFLY 281

Query: 118 KIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTII 172
            ++  +        +   LK+ +A  ++  +K  +  A+P+  E  AL+++   I
Sbjct: 282 ALISGKG-------IETALKYGSASASIVVSKHSSSDAMPSVEEIEALIEKDETI 329

>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} PDB: 3k9e_A Length = 330

 Score =  210 bits (538), Expect = 1e-68
 Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 9/174 (5%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           +   K  G ++S+DPN+R  +     E R+ +  + +  ++   S+ E+  L+     + 
Sbjct: 154 VTIVKANGGVISFDPNIRKEMLDI-PEMRDALHFVLELTDIYMPSEGEVLLLSPHSTPE- 211

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
            +        +K ++V  G  G  YY+ + +  V+++ V+ VD TGAGD F GA +    
Sbjct: 212 RAIAGFLEEGVKEVIVKRGNQGASYYSANEQFHVESYPVEEVDPTGAGDCFGGAWIACRQ 271

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTIIDK 174
                          L++ANACGAL+ T++G +       E    ++R  +  +
Sbjct: 272 LGFD-------AHRALQYANACGALAVTRRGPMEGTSRLMEIETFIQRHDMSIR 318

>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii} Length = 327

 Score =  209 bits (535), Expect = 3e-68
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 8/166 (4%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
              A+E G ++ +DP  R  LWP  ++    +  I  +A+ +K S  +   L G D   +
Sbjct: 168 FNYAREQGKIVCFDPCYRKVLWPEGDDGAGVVEEIISRADFVKPSLDDARHLFGPDSP-E 226

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
                     +K +++TLGE G           + AF    VD TGAGDAF    +C ++
Sbjct: 227 NYVKRYLELGVKAVILTLGEEGVIASDGEEIIRIPAFSEDAVDVTGAGDAFWSGFICGLL 286

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALL 166
           D  +       ++  +K  N   A      GA+  +P++ + +   
Sbjct: 287 DGYT-------VKRSIKLGNGVAAFKIRGVGALSPVPSKEDIIKEY 325

>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP} Length = 336

 Score =  196 bits (501), Expect = 6e-63
 Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 9/167 (5%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M   + AG  +S+DPNLR  LW +PE  R+ I  +  +A+ +     E  FLTG     +
Sbjct: 177 MDLMRAAGRSVSFDPNLRPTLWATPELMRDAINDLATRADWVLPGMEEGRFLTGETT-PE 235

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV-KTVDTTGAGDAFVGALLCKI 119
             A        KL++V LG  G  +  ++  G V  F V + VDT GAGD F   ++  +
Sbjct: 236 GVARFYRQLGAKLVVVKLGAEGAYFDGEAGSGRVAGFPVAEVVDTVGAGDGFAVGVISAL 295

Query: 120 VDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALL 166
           +D          + E +K     GA +    G    LPT +E  A  
Sbjct: 296 LDGLG-------VPEAVKRGAWIGARAVQVLGDSEGLPTRAELNAAK 335

>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A* Length = 328

 Score =  194 bits (495), Expect = 4e-62
 Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 9/164 (5%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           +  A+  G  +++DPNLR  LW    E  E IM     +++   S  +     G     D
Sbjct: 171 LAQARATGRTIAFDPNLRPRLWAGTGEMTETIMQGAAVSDIALPSFEDEAAWFGDAGP-D 229

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV-KTVDTTGAGDAFVGALLCKI 119
            +A       ++ ++V  G H   +     +G V    V + VDTT AGD+F   LL  +
Sbjct: 230 ATADRYARAGVRSVVVKNGPHAVHFLQDGRRGRVPVPPVAQVVDTTAAGDSFNAGLLDSV 289

Query: 120 VDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEAL 163
           +  Q        L   +  A A        KGA+  +P+     
Sbjct: 290 LAGQP-------LETAIAAAAALAGQVVQGKGALVEVPSLRPHA 326

>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A* Length = 313

 Score =  193 bits (493), Expect = 4e-62
 Identities = 49/171 (28%), Positives = 69/171 (40%), Gaps = 10/171 (5%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKA--EVIKVSDVELEFLTGSDKI 58
           +  A E     S D N+R  LW S E+A+E I+SI  K   EV+     + + L      
Sbjct: 149 VIKAFELAKSRSLDTNIRPKLWSSLEKAKETILSILKKYDIEVLITDPDDTKILLDVTDP 208

Query: 59  DDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCK 118
           D E+        +K+LL  LG  G   Y  + K   DA++V   D TGAGDA  G  +  
Sbjct: 209 D-EAYRKYKELGVKVLLYKLGSKGAIAYKDNVKAFKDAYKVPVEDPTGAGDAMAGTFVSL 267

Query: 119 IVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRS 169
            +  +        +   L    A   L  T +G     PT  +A   L   
Sbjct: 268 YLQGKD-------IEYSLAHGIAASTLVITVRGDNELTPTLEDAERFLNEF 311

>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Length = 296

 Score =  192 bits (489), Expect = 1e-61
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 17/166 (10%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTG-----S 55
                  G L  +D NLR   +      +E +   + +  ++K++D EL  ++       
Sbjct: 139 DTMPDIDGQLKIFDINLRQDFYT-----KEVLRESFKRCNILKINDEELVTISRMFGYPG 193

Query: 56  DKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGAL 115
             + D+  + L   NLK+L++T G +G   +T       +  +V   DT GAGD+F  A 
Sbjct: 194 IDLQDKCWILLAKYNLKMLILTCGINGSYVFTPGVVSFQETPKVPVADTVGAGDSFTAAF 253

Query: 116 LCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESE 161
              I++ +S       + E  K A    A   T+ GA+P LP   +
Sbjct: 254 CASILNGKS-------VPEAHKLAVEVSAYVCTQSGAMPELPVILK 292

>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A* Length = 311

 Score =  190 bits (485), Expect = 9e-61
 Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 12/170 (7%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDK--AEVIKVSDVELEFLTGSDKI 58
           +  A E  +  S+D N+RL LW + EEA+ +I+ +  K   + +     + + + G    
Sbjct: 149 VYKAFEIASNRSFDTNIRLKLWSA-EEAKREILKLLSKFHLKFLITDTDDSKIILGES-- 205

Query: 59  DDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCK 118
           D + A   +    +++++ LG  G   Y    K     ++V   D TGAGDA  G  L  
Sbjct: 206 DPDKAAKAFSDYAEIIVMKLGPKGAIVYYDGKKYYSSGYQVPVEDVTGAGDALGGTFLSL 265

Query: 119 IVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
                        + + L +A     L+   +G    LPT  +    L+ 
Sbjct: 266 YYKGFE-------MEKALDYAIVASTLNVMIRGDQENLPTTKDIETFLRE 308

>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A* Length = 313

 Score =  187 bits (478), Expect = 1e-59
 Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 17/173 (9%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPS-PEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKID 59
           +K  K +  L+++D NLRL LW    EE  + +      A+++K S+ E+ +L       
Sbjct: 148 IKKIKGSS-LIAFDVNLRLDLWRGQEEEMIKVLEESIKLADIVKASEEEVLYLENQGVEV 206

Query: 60  DESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKI 119
                        L  +TLG  GCR         V ++ V  +DTTGAGDAF+ ALL  I
Sbjct: 207 K---------GSMLTAITLGPKGCRLIKNETVVDVPSYNVNPLDTTGAGDAFMAALLVGI 257

Query: 120 VDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTII 172
           +           L ++ KFAN   ALST K+GA  + P + E L   +   ++
Sbjct: 258 LKL-----KGLDLLKLGKFANLVAALSTQKRGAW-STPRKDELLKYKEAREVL 304

>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A Length = 309

 Score =  186 bits (474), Expect = 3e-59
 Identities = 49/172 (28%), Positives = 71/172 (41%), Gaps = 14/172 (8%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AK  G  +S D N R  LW SPEEAR  +       +++ +S+ E E L G     +
Sbjct: 150 MEEAKRRGVRVSLDVNYRQTLW-SPEEARGFLERALPGVDLLFLSEEEAELLFGRV---E 205

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
           E+  +L       +++  G  G   +    +    AF V+ VD  GAGDAF    L   V
Sbjct: 206 EALRALSA---PEVVLKRGAKGAWAFVDGRRVEGSAFAVEAVDPVGAGDAFAAGYLAGAV 262

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTII 172
                      + E L+ AN  GA     +G     P   +   LLK +   
Sbjct: 263 WGLP-------VEERLRLANLLGASVAASRGDHEGAPYREDLEVLLKATQTF 307

>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A* Length = 325

 Score =  182 bits (463), Expect = 2e-57
 Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
              AK    ++  D      + P   E  + I       + +  +  E + LTG + +D 
Sbjct: 159 FTQAKARQMIICADM-----IKPRLNETLDDICEALSYVDYLFPNFAEAKLLTGKETLD- 212

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFR-VKTVDTTGAGDAFVGALLCKI 119
           E A       +K +++  G+ GC          V A   +  +DT GAGD F    +  +
Sbjct: 213 EIADCFLACGVKTVVIKTGKDGCFIKRGDMTMKVPAVAGITAIDTIGAGDNFASGFIAAL 272

Query: 120 VDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
           ++ ++       LRE  +FANA  A+S    GA   +        LL+ 
Sbjct: 273 LEGKN-------LRECARFANATAAISVLSVGATTGVKNRKLVEQLLEE 314

>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri} Length = 319

 Score =  180 bits (460), Expect = 5e-57
 Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 15/168 (8%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           ++  +  G  + +D N R  LW S EE ++    + +  ++  ++  + + L G   ++D
Sbjct: 155 LRECRAKGGKVIFDNNYRPRLWASKEETQQVYQQMLECTDIAFLTLDDEDALWGQQPVED 214

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKG----AVDAFRVKTVDTTGAGDAFVGALL 116
                  +  +K ++V  G   C             AV   + K +DTT AGD+F    L
Sbjct: 215 -VIARTHNAGVKEVVVKRGADSCLVSIAGEALVDVPAVKLPKEKVIDTTAAGDSFSAGYL 273

Query: 117 CKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAI---PALPTESE 161
              +   S            K  +   +     +GAI    A+P E  
Sbjct: 274 AVRLTGGS-------AENAAKRGHLTASTVIQYRGAIIPREAMPAEGH 314

>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1 Length = 351

 Score =  145 bits (369), Expect = 4e-43
 Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 31/192 (16%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTG------ 54
           +K A E G  +S D N R  LW   EEA++ ++   +  +V+  ++ ++E + G      
Sbjct: 163 LKVANEKGVTVSCDLNYRARLWTK-EEAQKVMIPFMEYVDVLIANEEDIEKVLGISVEGL 221

Query: 55  ---SDKIDDESALSLWH-----PNLKLLLVTLGE--------HGCRYYTKSFKGAVDAFR 98
              + K++ E+   +        N K + +TL E             +        + + 
Sbjct: 222 DLKTGKLNREAYAKIAEEVTRKYNFKTVGITLRESISATVNYWSVMVFENGQPHFSNRYE 281

Query: 99  VKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPT 158
           +  VD  GAGD+F GAL+   +            ++  +FA A   L  T  G    + +
Sbjct: 282 IHIVDRVGAGDSFAGALIYGSLMGFD-------SQKKAEFAAAASCLKHTIPGDFV-VLS 333

Query: 159 ESEALALLKRST 170
             E   L   +T
Sbjct: 334 IEEIEKLASGAT 345

>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis} Length = 346

 Score =  143 bits (362), Expect = 4e-42
 Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 26/185 (14%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEE--AREQIMSIWDKAEVIKVSDVELEFLTGSDKI 58
            + A      + +D N R  L  +      R+Q   I    +++  S  +L  L G    
Sbjct: 154 AQKAHAYQKKVCFDFNYRPSLNTANSALFMRQQYERILPYCDIVFGSRRDLVELLGFIPR 213

Query: 59  DDESALS---------LWHPNLKLLLVTLGEH-------GCRYYTKSFKGAVDAFRVKTV 102
           +D    +         +   NL+    T   H           YT++     +   +  +
Sbjct: 214 EDLEGEAQETELIQRFMSQYNLEWFAGTTRSHSQNQNYLSGYLYTQNEYQQSEKRPLLNL 273

Query: 103 DTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEA 162
           D  GAGDA+   +L     + S       L + + FA   G L+ T +G IP L T  + 
Sbjct: 274 DRIGAGDAYAAGILYGYSQNWS-------LEKAVTFATVNGVLAHTIQGDIP-LTTVKQV 325

Query: 163 LALLK 167
             +L+
Sbjct: 326 NHVLE 330

>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A Length = 302

 Score =  133 bits (337), Expect = 8e-39
 Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 19/174 (10%)

Query: 1   MKAAKEAGA--LLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI 58
           +K AK+A    L+S+DP   LP +     ++E ++ I +    + ++  E E  +     
Sbjct: 145 LKCAKKAYGNNLVSFDPGQDLPQY-----SKEMLLEIIEHTNFLFMNKHEFERASNLLNF 199

Query: 59  DDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV-KTVDTTGAGDAFVGALLC 117
           + +  L      +  L+VT G  G   YTK  K  +   +  K +D TGAGD++    L 
Sbjct: 200 EIDDYLE----RVDALIVTKGSKGSVIYTKDKKIEIPCIKAGKVIDPTGAGDSYRAGFLS 255

Query: 118 KIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTI 171
             V           L +      A  +     KG    LPT  + +  L++  I
Sbjct: 256 AYVKGYD-------LEKCGLIGAATASFVVEAKGCQTNLPTWDKVVERLEKHRI 302

>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens} Length = 328

 Score =  132 bits (335), Expect = 3e-38
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 11/170 (6%)

Query: 9   ALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL---- 64
            L ++       L P   E    +  +      IK +  E E L G    D +  +    
Sbjct: 153 LLKNFKDKTNFILDPVSAEKASWVKHLIKDFHTIKPNRHEAEILAGFPITDTDDLIKASN 212

Query: 65  SLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQS 124
                 +K + ++L   G  Y      G + A  V   + TGAGD+FV  L    ++   
Sbjct: 213 YFLGLGIKKVFISLDADGIFYNDGVSCGKIKATEVDVKNVTGAGDSFVAGLGYGYMNKMP 272

Query: 125 AIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTIIDK 174
                  + +I+KFA     ++ + +  I         LA L+++T  ++
Sbjct: 273 -------IEDIVKFAMTMSNITISHEETIHPDMALDTVLAKLEKTTWEEE 315

>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1 Length = 311

 Score =  130 bits (330), Expect = 1e-37
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 21/171 (12%)

Query: 2   KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE 61
           + AK    ++ +DP        +P  A+     I+   + +  ++ E+E L+     +  
Sbjct: 157 ECAKRFNGIVIFDP--------AP--AQGINEEIFQYLDYLTPNEKEIEALSKDFFGEFL 206

Query: 62  S----ALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLC 117
           +    A       +K ++V LG+ G     K+ K     F+VK VDTT AGD F GA   
Sbjct: 207 TVEKAAEKFLELGVKNVIVKLGDKGVLLVNKNEKKHFPTFKVKAVDTTAAGDVFNGAFAV 266

Query: 118 KIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
            + + ++         E + F  A  A+S T+ GA  ++P   E  A LK 
Sbjct: 267 ALSEGKN-------PEEAVIFGTAAAAISVTRLGAQSSIPAREEVEAFLKN 310

>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A* Length = 309

 Score =  128 bits (324), Expect = 1e-36
 Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 25/174 (14%)

Query: 1   MKAAKEAGA--LLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI 58
            K A +      L    N      P+P  ARE    +    ++I  ++ E E LTG    
Sbjct: 153 AKIAHQNKTIVAL----N------PAP--ARELPDELLALVDIITPNETEAEKLTGIRVE 200

Query: 59  DDES----ALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGA 114
           +DE     A  L    ++ +L+TLG  G           V  FRV+ VDT  AGD F GA
Sbjct: 201 NDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGA 260

Query: 115 LLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
           L+  +++++        L E ++FA+A  A++ T+KGA P++P   E  A L R
Sbjct: 261 LITALLEEKP-------LPEAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDR 307

>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus} Length = 304

 Score =  124 bits (315), Expect = 2e-35
 Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 24/167 (14%)

Query: 1   MKAAKEAGA--LLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI 58
            + AK  G   +L    N      P+P  A+     +    ++I  ++ E E L+G    
Sbjct: 152 FEIAKAHGVTTVL----N------PAP--AKALPNELLSLIDIIVPNETEAELLSGIKVT 199

Query: 59  DDES----ALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGA 114
           +++S    A       +K +L+TLG+ G  + TK+    ++A++V  +DTT AGD F+GA
Sbjct: 200 NEQSMKDNANYFLSIGIKTVLITLGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGA 259

Query: 115 LLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESE 161
            + ++       + +  L + + F N   +L+  K GA  ++P   E
Sbjct: 260 FVSRLN------KSQDNLADAIDFGNKASSLTVQKHGAQASIPLLEE 300

>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str} Length = 343

 Score =  125 bits (316), Expect = 3e-35
 Identities = 35/170 (20%), Positives = 57/170 (33%), Gaps = 18/170 (10%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           +  A+  G     D +       +P E  E    +   A  I  S+     LTG + + D
Sbjct: 175 LTVARALGKPAILDGD------VAPVETLE---GLAPAATHIVFSEPAATRLTGLETVKD 225

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGA--VDAFRVKTVDTTGAGDAFVGALLCK 118
              +         + VT G  GC +              +V+ VDT  AGD F G     
Sbjct: 226 MLPVLHARYPQTFIAVTAGPAGCWWTEADDPTVHFQTTMQVEAVDTLAAGDIFHGTFALA 285

Query: 119 IVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
           + +           R  ++ ++   AL  T  G     PT  E    +++
Sbjct: 286 MAEGMQ-------SRAAVRLSSVAAALKCTVFGGRIGAPTREETEEAMRQ 328

>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str} Length = 317

 Score =  121 bits (306), Expect = 5e-34
 Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 17/167 (10%)

Query: 2   KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE 61
             A+         P   + + P+   A + + +     +++ +++ E   LTG    +  
Sbjct: 154 LIARACEK-----PLAAIAISPAK--AVK-LKAALGDIDILFMNEAEARALTGETAENVR 205

Query: 62  SALSLWHPN-LKLLLVTLGEHGCRYYTKSFKGAVD-AFRVKTVDTTGAGDAFVGALLCKI 119
              ++     L   +VT G      +  + K  +      +  D TGAGDA     L  I
Sbjct: 206 DWPNILRKAGLSGGVVTRGASEVVAFNGTEKAILHPPLIREVKDVTGAGDAMASGYLAAI 265

Query: 120 VDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALL 166
            + ++       +RE L+   A  A++     A     ++    A+L
Sbjct: 266 AEGKT-------IREALRQGAAAAAITVQSSFATSQDLSKDSVEAML 305

>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A* Length = 310

 Score =  119 bits (300), Expect = 3e-33
 Identities = 38/170 (22%), Positives = 61/170 (35%), Gaps = 25/170 (14%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
            +AA+ A A++  + +       S ++       +   A+V+  ++ E            
Sbjct: 162 ARAAQSADAVVMVNASPAGQDRSSLQD-------LAAIADVVIANEHEANDWPSPPTH-- 212

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
                         ++TLG  G RY        V A  V  VDT GAGD F G L     
Sbjct: 213 -------------FVITLGVRGARYVGADGVFEVPAPTVTPVDTAGAGDVFAGVLAANWP 259

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRST 170
            +  +  +       L+ A A GAL+T   G     P  +   A L+ + 
Sbjct: 260 RNPGSPAE---RLRALRRACAAGALATLVSGVGDCAPAAAAIDAALRANR 306

>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A* Length = 326

 Score =  117 bits (296), Expect = 1e-32
 Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 17/169 (10%)

Query: 2   KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE 61
           +   +AG    +DP   LPL       R  I    + A  I V+D E + +       ++
Sbjct: 154 EELAQAGVPFIFDPGQGLPL-FDGATLRRSI----ELATYIAVNDYEAKLVCDKTGWSED 208

Query: 62  SALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV-KTVDTTGAGDAFVGALLCKIV 120
              S     ++ L++T GEHG     +     + A R  + +D TG GDAF G LL  I 
Sbjct: 209 EIASR----VQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIE 264

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRS 169
                           + A+  GAL    +G     PT +E  A  + +
Sbjct: 265 HGFD-------WATAGRLASLMGALKIAHQGPQTYAPTRAEIDARFETA 306

>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A* Length = 299

 Score =  115 bits (291), Expect = 6e-32
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 29/167 (17%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
            + A+  G    ++P        SP         +W   ++  V++ E E L        
Sbjct: 150 FQYARSRGMTTVFNP--------SP--VNPDFCHLWPLIDIAVVNESEAELLQPYG---- 195

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
                     +K L++T G  G     +  +    A   + +DTTGAGD F+  +L   +
Sbjct: 196 ----------VKTLVITQGAAGAWLVQEGQRQFCPAVPAEALDTTGAGDTFLAVMLASAL 245

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
                          L  A+   A++ +++G + A P   E  ALL 
Sbjct: 246 L-----RGVAPDALALAHASRAAAITVSRRGTLSAFPGSRELAALLT 287

>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1 Length = 331

 Score =  114 bits (289), Expect = 2e-31
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 26/175 (14%)

Query: 1   MKAAKEAGA--LLSYDPNLRLPLWPSPEEAREQI-MSIWDKAEVIKVSDVELEFLTGSDK 57
           +  A+ +G   L     N      P+P  A   +    +  ++V   ++ E E LTG   
Sbjct: 173 LTMARRSGVKTLF----N------PAP--AIADLDPQFYTLSDVFCCNESEAEILTGLTV 220

Query: 58  IDDES----ALSLWHPNLKLLLVTLGEHGCRYYTKSFKGA--VDAFRVKTVDTTGAGDAF 111
                    AL L     +++++TLG  GC   +++      +   +VK VDTTGAGD+F
Sbjct: 221 GSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEPKHIPTEKVKAVDTTGAGDSF 280

Query: 112 VGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALL 166
           VGAL   +    +   +   L ++L  +N   A+S    G   + P + +    L
Sbjct: 281 VGALAFYL----AYYPNLS-LEDMLNRSNFIAAVSVQAAGTQSSYPYKKDLPLTL 330

>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A* Length = 334

 Score =  108 bits (273), Expect = 4e-29
 Identities = 29/171 (16%), Positives = 50/171 (29%), Gaps = 18/171 (10%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
            +  ++ G   + DP+ +L          E+I  + + A  +  +D E + L       +
Sbjct: 166 TEECRKLGLAFAADPSQQLARLS-----GEEIRRLVNGAAYLFTNDYEWDLLLSKTGWSE 220

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGA-VDAF-RVKTVDTTGAGDAFVGALLCK 118
              ++     + L + TLG  G            V         D TG GDAF    L  
Sbjct: 221 ADVMA----QIDLRVTTLGPKGVDLVEPDGTTIHVGVVPETSQTDPTGVGDAFRAGFLTG 276

Query: 119 IVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRS 169
                        L    +  +    L     G          A + L  +
Sbjct: 277 RSAGLG-------LERSAQLGSLVAVLVLESTGTQEWQWDYEAAASRLAGA 320

>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum} Length = 313

 Score =  108 bits (270), Expect = 5e-29
 Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 14/178 (7%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           +    +   ++              E   E++  +  + +V  V+D E   L+G   +  
Sbjct: 137 LDQIDDPKLVVCDTM------NFWIEGKPEELKKVLARVDVFIVNDSEARLLSGDPNLV- 189

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKT-VDTTGAGDAFVGALLCKI 119
           ++A  +     K L++  GEHG   +T +   A  AF +++  D TGAGD F G  +  +
Sbjct: 190 KTARIIREMGPKTLIIKKGEHGALLFTDNGIFAAPAFPLESIYDPTGAGDTFAGGFIGHL 249

Query: 120 VDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEA----LALLKRSTIID 173
               +  E E  +R+ + + +A  +    + G       +              + I+
Sbjct: 250 ARCGNTSEAE--MRKAVLYGSAMASFCVEQFGPYRYNDLDLLEVDDRYQSFLELSRIE 305

>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728} Length = 306

 Score =  107 bits (269), Expect = 9e-29
 Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 23/168 (13%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           +  AK   + + +DP+  +  +      ++++    + + +   +D E         +  
Sbjct: 153 LDMAKSIRSKIIFDPSQEIHKYS-----KDELKKFHEISYMSIFNDHEYRVFREMTGLSS 207

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
                         +VT GE G   +    K    A      DT GAGD+F   L   + 
Sbjct: 208 PK---------VTTIVTNGERGSSLFMDGKKYDFPAIPSS-GDTVGAGDSFRAGLYLALY 257

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
           + +S       + + + +     A      G         +     + 
Sbjct: 258 NRRS-------IEKGMIYGTII-AHHVIDDGIENFSLNMEDLERETEN 297

>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A Length = 312

 Score =  106 bits (267), Expect = 2e-28
 Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 9/153 (5%)

Query: 2   KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE 61
              +         P  ++ +    E+ RE++  ++   +V+ VS    + L      +  
Sbjct: 163 MLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEAL 222

Query: 62  SALSLWHPNLKLLLVTLGEHGCRYYTKSFKG-AVDAFRV-KTVDTTGAGDAFVGALLCKI 119
             L        +L+    E G        K    DAF   + VDT GAGD F  +++  +
Sbjct: 223 RGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSL 282

Query: 120 VDDQSAIEDEPRLREILKFANACGALSTTKKGA 152
              +S       ++E L+F           +G 
Sbjct: 283 SQGRS-------VQEALRFGCQVAGKKCGLQGF 308

>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1 Length = 298

 Score =  104 bits (260), Expect = 1e-27
 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 14/171 (8%)

Query: 1   MKAAKEAGALLSYDPNLRLPLW---PSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDK 57
           +   +     LS D    + +           E         ++ KV   E E LTG++ 
Sbjct: 138 IPVLRRKVMFLSADAQGFVRVPENEKLVYRDWEMKEKYLKYLDLFKVDSREAETLTGTND 197

Query: 58  IDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLC 117
           +  ES   +     K++L T    G   +  +F              TG GD    A L 
Sbjct: 198 LR-ESCRIIRSFGAKIILATHAS-GVIVFDGNFY-EASFRSWSLEGRTGRGDTCTAAFLV 254

Query: 118 KIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
                   +  +  + +  KFA A  ++     G +     + EA++  + 
Sbjct: 255 ------GFVFKKMSIEKATKFAAAVTSVKMRHPGPLRR--EDLEAISGDQY 297

>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A Length = 320

 Score = 68.4 bits (168), Expect = 3e-14
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 9/134 (6%)

Query: 38  KAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAF 97
             + IK ++ E+  +        E  +      +  L+V+LG  G           V   
Sbjct: 182 GVDFIKPNEDEVIAILDEKTNSLEENIRTLAEKIPYLVVSLGAKGSICAHNGKLYQVIPP 241

Query: 98  RVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALP 157
           +V+  + TGAGD FVGA +  +  +         + E LK A  C A    ++ +  +  
Sbjct: 242 KVQERNDTGAGDVFVGAFIAGLAMNMP-------ITETLKVATGCSASKVMQQDS--SSF 292

Query: 158 TESEALALLKRSTI 171
               A  L  + +I
Sbjct: 293 DLEAAGKLKNQVSI 306

>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A* Length = 309

 Score = 64.1 bits (157), Expect = 9e-13
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 20/139 (14%)

Query: 38  KAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLL--------LVTLGEHGCRYYTKS 89
             E++K +  EL  L   +    +          +++        +V+LG  G       
Sbjct: 180 NIELVKPNQKELSALVNRELTQPDDVRKAAQ---EIVNSGKAKRVVVSLGPQGALGVDSE 236

Query: 90  FKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTK 149
               V    VK+  T GAGD+ VGA+  K+ ++ S       L E+++F  A G+ +T  
Sbjct: 237 NCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENAS-------LEEMVRFGVAAGSAATLN 289

Query: 150 KGAIPALPTESEALALLKR 168
           +G    L +  +   +   
Sbjct: 290 QGT--RLCSHDDTQKIYAY 306

>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A* Length = 323

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 15/137 (10%)

Query: 41  VIKVSDVELEFLTG----SDKIDD--ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAV 94
           +IK +  ELE L G     + +     +        ++ ++++LG+ G           V
Sbjct: 183 LIKPNLEELEGLLGQDFSENPLAAVQTALTKPMFAGIEWIVISLGKDGAIAKHHDQFYRV 242

Query: 95  DAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIP 154
               ++  +  G+GDA +  L   +  D           E+LK+  A G  +  ++    
Sbjct: 243 KIPTIQAKNPVGSGDATIAGLAYGLAKDAP-------AAELLKWGMAAGMANAQERMT-- 293

Query: 155 ALPTESEALALLKRSTI 171
                      L    +
Sbjct: 294 GHVDVENVKKHLMNIQV 310

>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus} Length = 306

 Score = 62.5 bits (153), Expect = 3e-12
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 15/135 (11%)

Query: 41  VIKVSDVELEFLTGSDKIDDES----ALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDA 96
            IK +  ELE +  +    D         L     + ++V+LG  G  Y  K        
Sbjct: 177 FIKPNKDELEVMFNTTVNSDADVIKYGRLLVDKGAQSVIVSLGGDGAIYIDKEISIKAVN 236

Query: 97  FRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPAL 156
            + K V+T G+GD+ V  ++  I    S       + +  + A ACG  +   +     L
Sbjct: 237 PQGKVVNTVGSGDSTVAGMVAGIASGLS-------IEKAFQQAVACGTATAFDED----L 285

Query: 157 PTESEALALLKRSTI 171
            T      +  + TI
Sbjct: 286 ATRDAIEKIKSQVTI 300

>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A* Length = 330

 Score = 62.6 bits (153), Expect = 3e-12
 Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 14/136 (10%)

Query: 41  VIKVSDVELEFLTGSDKIDDESALSLWHPNL-----KLLLVTLGEHGCRYYTKSFKGAVD 95
           VIK +  EL  L      +   +L            + ++V+LG  G           V+
Sbjct: 201 VIKPNISELYQLLNQPLDESLESLKQAVSQPLFEGIEWIIVSLGAQGAFAKHNHTFYRVN 260

Query: 96  AFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPA 155
              +  ++  G+GD+ V  +   I++ ++         ++LK AN  G L+  +      
Sbjct: 261 IPTISVLNPVGSGDSTVAGITSAILNHEN-------DHDLLKKANTLGMLNAQEAQT--G 311

Query: 156 LPTESEALALLKRSTI 171
               +    L  +  +
Sbjct: 312 YVNLNNYDDLFNQIEV 327

>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1 Length = 306

 Score = 61.8 bits (151), Expect = 5e-12
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 15/132 (11%)

Query: 41  VIKVSDVELEFLTGSDKIDDES----ALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDA 96
            IK +  EL  L        E        L    ++ +LV+    G  + +      V+ 
Sbjct: 177 FIKPNHHELSELVSKPIASIEDAIPHVQRLIGEGIESILVSFAGDGALFASAEGMFHVNV 236

Query: 97  FRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPAL 156
              +  ++ GAGD+ V   L  + + +S       L + + FA A G+ +    G     
Sbjct: 237 PSGEVRNSVGAGDSVVAGFLAALQEGKS-------LEDAVPFAVAAGSATAFSDG----F 285

Query: 157 PTESEALALLKR 168
            T  E   L ++
Sbjct: 286 CTREEVERLQQQ 297

>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A* Length = 352

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 14/126 (11%)

Query: 48  ELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV-KTVDTTG 106
           E   L  +D  ++  AL+    + K+  VT+ E+G        +  V+A R+ + VDTTG
Sbjct: 240 EALSLYQTDDFEE--ALNRIAADCKIAAVTMSENGAVILKGRERYYVNAIRIREVVDTTG 297

Query: 107 AGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALL 166
           AGD F    L      +S       L +  K       +   + G  P     +      
Sbjct: 298 AGDLFASGFLYGYTQGRS-------LEDCGKLGCLAAGIVIQQIGPRP----MTSLSEAA 346

Query: 167 KRSTII 172
           K++ +I
Sbjct: 347 KQAGLI 352

>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1 Length = 331

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 22/133 (16%)

Query: 48  ELEFLTGSDKIDDESALSLWHPNLKLL------LVTLGEHGCRYYTKSFKGAV---DAFR 98
                 G D    +  + L     KL       +V+         T+   G         
Sbjct: 208 NHASFLGVDLKTFDDYVKLAE---KLAEKSQVSVVSYEVKNDIVATRE--GVWLIRSKEE 262

Query: 99  VKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPT 158
           + T    GAGDA+V  ++   +   +         E+ KF  A    +T +K     +P 
Sbjct: 263 IDTSHLLGAGDAYVAGMVYYFIKHGANFL------EMAKFGFASALAATRRKE--KYMPD 314

Query: 159 ESEALALLKRSTI 171
                      T+
Sbjct: 315 LEAIKKEYDHFTV 327

>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A* Length = 347

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 33/176 (18%)

Query: 1   MKAAKEAGAL----LSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSD 56
            + A+E   L    LS  P +        +    Q+  +    ++I  +  E +      
Sbjct: 184 CRKAREVDGLFMINLS-APFI-------MQFFSAQLGEVLPYTDIIVANRHEAKEFANMM 235

Query: 57  KIDDES----------ALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV---KTVD 103
           K D +            +       ++++ T         TK     V   ++   K +D
Sbjct: 236 KWDTDCVEEIARRAVSEVPYTGTKGRVVVFTRDIESTVLATKDGVETVPVPQLDQDKVID 295

Query: 104 TTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGA-IPALPT 158
             GAGDAF+G  L      +        LR   +  +        + G   P  P+
Sbjct: 296 MNGAGDAFMGGFLSAYAVGKD-------LRRCCETGHYTAQEVIQRDGCSFPEKPS 344

>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A* Length = 345

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 33/175 (18%)

Query: 1   MKAAKEAGAL----LSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSD 56
              A E   +    LS  P +        +  +E +M +    +++  ++ E        
Sbjct: 183 AHHASENNRIFTLNLS-APFI-------SQFYKESLMKVMPYVDILFGNETEAATFAREQ 234

Query: 57  KIDDE----------SALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAF---RVKTVD 103
             + +          +   +     ++++ T G       T+S   A       + + +D
Sbjct: 235 GFETKDIKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIID 294

Query: 104 TTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGA-IPALP 157
           T GAGDAFVG  L ++V D+        L E ++  +   ++   + G   P  P
Sbjct: 295 TNGAGDAFVGGFLSQLVSDKP-------LTECIRAGHYAASIIIRRTGCTFPEKP 342

>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae} Length = 365

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 33/184 (17%), Positives = 58/184 (31%), Gaps = 38/184 (20%)

Query: 1   MKAAKEAGAL----LSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSD 56
            K A   G +    LS  P +       P+  +  +  I+   +V+  ++ E   L    
Sbjct: 198 AKEAAATGRMFMMNLS-APFV-------PQFYKNNLEEIFPYVDVLFGNETEAIALAKEF 249

Query: 57  KIDDESALSL----------WHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV------K 100
               E    +               +++++T G              V  F V      +
Sbjct: 250 NYGTEDLREIGKRIAALPKENGKRKRIVIITQGSDPVLLIEAG-TDNVREFPVQKLAPEQ 308

Query: 101 TVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTES 160
            VDT GAGDAFVG  L +++  ++       +   +K           + G       E 
Sbjct: 309 MVDTNGAGDAFVGGFLAQLLQSRT-------VDVCIKCGIWAAREIIQRSG--CTFEGEP 359

Query: 161 EALA 164
              A
Sbjct: 360 SFCA 363

>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A* Length = 383

 Score = 49.7 bits (119), Expect = 8e-08
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 17/145 (11%)

Query: 26  EEARE--QIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGC 83
           EE     ++ ++    +    +  +   +                   KL+++T G +  
Sbjct: 245 EEFAHLAKVHNLVAAEKTALSTANKEHAVEVCTGALRLLTAGQNTSATKLVVMTRGHNPV 304

Query: 84  RYYTKSFKGAVDAFRV--------KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREI 135
               ++  G V    V        K VDT GAGDAFVG  L  +   ++       +++ 
Sbjct: 305 IAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKT-------VKQC 357

Query: 136 LKFANACGALSTTKKGAIPALPTES 160
           +   NAC        G   +    S
Sbjct: 358 IMCGNACAQDVIQHVGFSLSFTFTS 382

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
2qcv_A	332	Putative 5-dehydro-2-deoxygluconokinase; structura	99.97
3ljs_A	338	Fructokinase; fructokianse, PSI2, NYSGXRC, structu	99.97
3iq0_A	330	Putative ribokinase II; transferase,kinase,SAD,rib	99.97
3pl2_A	319	Sugar kinase, ribokinase family; PFKB PFAM motif,	99.97
3ktn_A	346	Carbohydrate kinase, PFKB family; PFKB family,ribo	99.97
4du5_A	336	PFKB; structural genomics, PSI-biology, NEW YORK s	99.97
3hj6_A	327	Fructokinase, FRK; fructose, transferase, carbohyd	99.97
1tyy_A	339	Putative sugar kinase; ribokinase fold, alpha/beta	99.97
1v1a_A	309	2-keto-3-deoxygluconate kinase; ATP, structural ge	99.96
3kzh_A	328	Probable sugar kinase; NYSGXRC, PSI-II, protein st	99.96
2v78_A	313	Fructokinase; transferase, PFKB family carbohydrat	99.96
2afb_A	351	2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-	99.96
3h49_A	325	Ribokinase; transferase,PFKB family,sugar kinase Y	99.96
3ie7_A	320	LIN2199 protein; phosphofructokinases, transferase	99.95
4gm6_A	351	PFKB family carbohydrate kinase; enzyme function i	99.95
2c4e_A	302	Sugar kinase MJ0406; transferase, nucleoside kinas	99.95
4e69_A	328	2-dehydro-3-deoxygluconokinase; putative sugar kin	99.95
2dcn_A	311	Hypothetical fructokinase; 2-keto-3-deoxygluconate	99.95
2jg1_A	330	Tagatose-6-phosphate kinase; phosphoryl transfer,	99.95
1rkd_A	309	Ribokinase; carbohydrate kinase, ribose, nucleotid	99.95
3ry7_A	304	Ribokinase; transferase; 2.15A {Staphylococcus aur	99.95
3b1n_A	326	Ribokinase, putative; rossmann fold, ATP binding,	99.95
2pkf_A	334	Adenosine kinase; transferase, S genomics, TB stru	99.95
2abq_A	306	Fructose 1-phosphate kinase; dimer, structural gen	99.95
2jg5_A	306	Fructose 1-phosphate kinase; 1-phosphofructokinase	99.95
3ikh_A	299	Carbohydrate kinase; transferase,kinase,SAD,ribose	99.95
2nwh_A	317	AGR_C_3442P, carbohydrate kinase; structural genom	99.95
3umo_A	309	6-phosphofructokinase isozyme 2; glycolysis, trans	99.95
3lhx_A	319	Ketodeoxygluconokinase; structural genomics, PSI-2	99.95
2f02_A	323	Tagatose-6-phosphate kinase; LACC, structural geno	99.95
3ewm_A	313	Uncharacterized sugar kinase PH1459; carbohydrate	99.95
3go6_A	310	Ribokinase RBSK; phosphofructokinase, carbohydrate	99.95
2rbc_A	343	Sugar kinase, AGR_C_4560P; ribokinase family, ATP-	99.95
1vm7_A	311	Ribokinase; TM0960, structural genomics, JCSG, pro	99.94
2fv7_A	331	Ribokinase; structural genomics, structural genomi	99.94
2qhp_A	296	Fructokinase; NP_810670.1, PFKB family carbohydrat	99.94
3cqd_A	309	6-phosphofructokinase isozyme 2; phosphofructokina	99.94
3kd6_A	313	Carbohydrate kinase, PFKB family; nucleoside kinas	99.94
4e3a_A	352	Sugar kinase protein; structural genomics, protein	99.94
4e84_A	352	D-beta-D-heptose 7-phosphate kinase; LPS-heptose b	99.94
2ajr_A	331	Sugar kinase, PFKB family; TM0828, possible 1-phos	99.94
3vas_A	370	Putative adenosine kinase; ribokinase, enzyme, tra	99.93
3uq6_A	372	Adenosine kinase, putative; ribokinase, transferas	99.92
3otx_A	347	Adenosine kinase, putative; AP5A, transferase-tran	99.92
3loo_A	365	Anopheles gambiae adenosine kinase; AP4A, P4-DI(ad	99.92
1vk4_A	298	PFKB carbohydrate kinase TM0415; structural genomi	99.92
3bf5_A	306	Ribokinase related protein; 10640157, putative rib	99.92
1bx4_A	345	Protein (adenosine kinase); human adenosine kinase	99.91
2ddm_A	283	Pyridoxine kinase; pyridoxal kinase, ribokinase, p	99.91
1ub0_A	258	THID, phosphomethylpyrimidine kinase; thiamin bios	99.9
1jxh_A	288	Phosphomethylpyrimidine kinase; THID, ribokinase f	99.89
2i5b_A	271	Phosphomethylpyrimidine kinase; ADP complex, PDXK,	99.89
2abs_A	383	Adenosine kinase, AK; ribokinase fold, alpha/beta,	99.88
2yxt_A	312	Pyridoxal kinase; beta sheet with alpha helix, met	99.87
3mbh_A	291	Putative phosphomethylpyrimidine kinase; structura	99.87
2hlz_A	312	Ketohexokinase; non-protein kinase, creatine kinas	99.86
3h74_A	282	Pyridoxal kinase; PSI-II, structural genomics, pro	99.86
3pzs_A	289	PM kinase, pyridoxamine kinase; structural genomic	99.85
3zs7_A	300	Pyridoxal kinase; transferase, sleeping sickness;	99.83
3rm5_A	550	Hydroxymethylpyrimidine/phosphomethylpyrimidine K	99.69
1ekq_A	272	Hydroxyethylthiazole kinase; alpha-beta, transfera	99.64
1v8a_A	265	Hydroxyethylthiazole kinase; alpha-beta, ATP bindi	99.27
3dzv_A	273	4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_	99.13
3bgk_A	311	SMU.573, putative uncharacterized protein; alpha/b	99.1
2r3b_A	310	YJEF-related protein; putative kinase in the ribok	99.07
3rss_A	502	Putative uncharacterized protein; unknown function	98.85
3rpz_A	279	ADP/ATP-dependent NAD(P)H-hydrate dehydratase; str	98.85
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	98.58
3hpd_A	265	Hydroxyethylthiazole kinase; alpha-beta, ATP bindi	98.56
3k5w_A	475	Carbohydrate kinase; 11206B,helicobacter pylori,PS	97.68
3drw_A	474	ADP-specific phosphofructokinase; AMP, GLYC kinase	96.1

>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}

Probab=99.97  E-value=2.7e-30  Score=210.73  Aligned_cols=162  Identities=22%  Similarity=0.394  Sum_probs=139.5

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCC--CCHHHHHHhcCCCCcEEEEEcC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDK--IDDESALSLWHPNLKLLLVTLG   79 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~--~~~~~~~~l~~~g~~~vvit~G   79 (185)
                      +.++++|+++++||+.++..|.+.+...+.+.++++++|++++|++|+..|++...  ...+.+.++++.|++.|+||.|
T Consensus       163 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvvt~G  242 (332)
T 2qcv_A          163 RLAKRNDVKVVFELDYRPYSWETPEETAVYYSLVAEQSDIVIGTREEFDVLENRTEKGDNDETIRYLFKHSPELIVIKHG  242 (332)
T ss_dssp             HHHHHTTCEEEEECCCCGGGSSCHHHHHHHHHHHHHHCSEEEEEHHHHHHHTTCSSCCCHHHHHHHHTTSSCSEEEEECG
T ss_pred             HHHHHCCCEEEEcCcCchhhcCCHHHHHHHHHHHHHhCCEEEccHHHHHHHhCCCcCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            56788999999999998888887667777888899999999999999999998752  2223345777889999999999


Q ss_pred             CCceEEEEc-CceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCC
Q 029908           80 EHGCRYYTK-SFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPT  158 (185)
Q Consensus        80 ~~G~~~~~~-~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~  158 (185)
                      ++|++++++ ++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.+.+|+
T Consensus       243 ~~G~~~~~~~~~~~~~~~~~v~vvdt~GAGDaf~a~~~~~l~~g~~-------~~~a~~~A~~~aa~~v~~~G~~~~~p~  315 (332)
T 2qcv_A          243 VEGSFAYTKAGEAYRGYAYKTKVLKTFGAGDSYASAFLYALISGKG-------IETALKYGSASASIVVSKHSSSDAMPS  315 (332)
T ss_dssp             GGCEEEEETTSCEEEECCBCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHHC-----CCCC
T ss_pred             CcceEEEecCCceEEcCCCCccccCCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHccCCCccCCCC
Confidence            999999987 678899999999999999999999999999999999       999999999999999999999888999


Q ss_pred             HHHHHHHHhcCc
Q 029908          159 ESEALALLKRST  170 (185)
Q Consensus       159 ~~~i~~~~~~~~  170 (185)
                      ++++++++++..
T Consensus       316 ~~ev~~~l~~~~  327 (332)
T 2qcv_A          316 VEEIEALIEKDE  327 (332)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCC
Confidence            999999987653

>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A*

Probab=99.97  E-value=2.7e-31  Score=217.38  Aligned_cols=163  Identities=37%  Similarity=0.618  Sum_probs=131.9

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHH-HHHHhcCCCCcEEEEEcCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE-SALSLWHPNLKLLLVTLGE   80 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~-~~~~l~~~g~~~vvit~G~   80 (185)
                      +.++++|++|++||++++.+|.+.....+.+.++++++|++++|++|++.|++....+.+ .++++++.|++.||||.|.
T Consensus       154 ~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~l~~~g~~~vvvT~G~  233 (338)
T 3ljs_A          154 RRAQAAGAIVSFDLNFRPMLWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAADANAVIQQLWQGRAQLLLVTDAA  233 (338)
T ss_dssp             HHHHHTTCEEEEECCCCGGGSCTTCCTHHHHHHHHHTCSEEEEEHHHHHHHHHHHTSCHHHHHHHHTTTTCCEEEEEETT
T ss_pred             HHHHHcCCEEEEECCCChhhcCCHHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCChhHHHHHHHHHhcCCCEEEEeeCC
Confidence            567889999999999999999766666788889999999999999999999986654432 3457778899999999999


Q ss_pred             CceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHcc--------------CCCCCChHHHHHHHHHHHHHhHHH
Q 029908           81 HGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDD--------------QSAIEDEPRLREILKFANACGALS  146 (185)
Q Consensus        81 ~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g--------------~~~~~~~~~~~~a~~~a~~~aa~~  146 (185)
                      +|++++++++.+++|+++++++|++||||+|+|+|+++|++|              .+       +++|+++|+++|+.+
T Consensus       234 ~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~a~~~~~l~~g~~~~~~~~~~~~~~~~-------l~~al~~A~~~aa~~  306 (338)
T 3ljs_A          234 GPVHWYTRTAGGEVPTFRVQVQDSNAAGDAFVGGMLYTFAQQFDDAAALIDFCHDPES-------IVSTLRFAAAVGALA  306 (338)
T ss_dssp             EEEEEEESSCEEEECC-----------CHHHHHHHHHHHHHHCSSTHHHHHHHTCHHH-------HHHHHHHHHHHHGGG
T ss_pred             CceEEEECCceEEeCCCCCccCCCCCccHHHHHHHHHHHHhCCCcccchhccccChHH-------HHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999              66       999999999999999


Q ss_pred             hhccCCCCCCCCHHHHHHHHhcCcc
Q 029908          147 TTKKGAIPALPTESEALALLKRSTI  171 (185)
Q Consensus       147 ~~~~g~~~~~~~~~~i~~~~~~~~~  171 (185)
                      +++.|+.+++|+++++++++++..-
T Consensus       307 v~~~Ga~~~~p~~~ev~~~~~~~~~  331 (338)
T 3ljs_A          307 VTRQGAFTAMPMLSEVLSLIQEQSE  331 (338)
T ss_dssp             C----CCCCTTHHHHHHHHHHHHHC
T ss_pred             hCCCCCCCCCCCHHHHHHHHhhhcc
Confidence            9999999899999999999876543

>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A

Probab=99.97  E-value=1.1e-30  Score=213.28  Aligned_cols=161  Identities=26%  Similarity=0.457  Sum_probs=143.2

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.++++|++|++||+.+..+|.. +...+.+.++++++|++++|++|++.|++.... .+.++++.+.|++.|++|.|++
T Consensus       155 ~~a~~~g~~v~~D~~~~~~~~~~-~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~-~~~~~~l~~~g~~~vvvT~G~~  232 (330)
T 3iq0_A          155 TIVKANGGVISFDPNIRKEMLDI-PEMRDALHFVLELTDIYMPSEGEVLLLSPHSTP-ERAIAGFLEEGVKEVIVKRGNQ  232 (330)
T ss_dssp             HHHHHTTCEEEEECCCCGGGGGS-HHHHHHHHHHHHTCSEECCBGGGTTTTCSCSSH-HHHHHHHHHHTCSEEEEECGGG
T ss_pred             HHHHHcCCEEEEcCCCCccccCc-HHHHHHHHHHHhhCCEEecCHHHHHHHhCCCCH-HHHHHHHHHcCCCEEEEEeCCC
Confidence            56788999999999999888874 346778889999999999999999999987432 2334466678999999999999


Q ss_pred             ceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHHH
Q 029908           82 GCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESE  161 (185)
Q Consensus        82 G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~~  161 (185)
                      |++++++++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.+++|++++
T Consensus       233 G~~~~~~~~~~~~~~~~v~vvdttGAGDaf~a~~~~~l~~g~~-------~~~a~~~A~~~aa~~v~~~G~~~~~p~~~e  305 (330)
T 3iq0_A          233 GASYYSANEQFHVESYPVEEVDPTGAGDCFGGAWIACRQLGFD-------AHRALQYANACGALAVTRRGPMEGTSRLME  305 (330)
T ss_dssp             CEEEECSSCEEEECCCCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHTTSCSSSTTCCCHHH
T ss_pred             ceEEEECCceEEecCCCCccCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcCcCCCCCCCCHHH
Confidence            9999999999999999999999999999999999999999999       999999999999999999999888999999


Q ss_pred             HHHHHhcCcc
Q 029908          162 ALALLKRSTI  171 (185)
Q Consensus       162 i~~~~~~~~~  171 (185)
                      +++++++...
T Consensus       306 v~~~~~~~~~  315 (330)
T 3iq0_A          306 IETFIQRHDM  315 (330)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHhccc
Confidence            9999987664

>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0

Probab=99.97  E-value=4.7e-30  Score=208.22  Aligned_cols=155  Identities=30%  Similarity=0.410  Sum_probs=140.6

Q ss_pred             HcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCCceEE
Q 029908            6 EAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRY   85 (185)
Q Consensus         6 ~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~   85 (185)
                      +.+.++++||++++.+|.+.....+.+.++++++|++++|++|++.|++.... .+.++++.+.|++.|++|+|.+|+++
T Consensus       163 ~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~-~~~~~~l~~~g~~~vvvt~G~~G~~~  241 (319)
T 3pl2_A          163 ANRRHTIFDLDYRPMFWESPEEATKQAEWALQHSTVAVGNKEECEIAVGETEP-ERAGRALLERGVELAIVKQGPKGVMA  241 (319)
T ss_dssp             TTCSCEEEECCCCGGGSSCHHHHHHHHHHHHTTCSEEEECHHHHHHHHSCCSH-HHHHHHHHHTTCSEEEEEEETTEEEE
T ss_pred             HHCCcEEEeCCCChhhcCCHHHHHHHHHHHHHhCCEEEcCHHHHHHHcCCCCH-HHHHHHHHhcCCCEEEEEECCCCeEE
Confidence            34778999999999999888888889999999999999999999999987532 23344677789999999999999999


Q ss_pred             EEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHHHHHHH
Q 029908           86 YTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALAL  165 (185)
Q Consensus        86 ~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~~i~~~  165 (185)
                      +++++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+...+|+++|++++
T Consensus       242 ~~~~~~~~~~~~~v~vvdttGAGDaf~a~~~~~l~~g~~-------~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~  314 (319)
T 3pl2_A          242 MTKDETVEVPPFFVDVINGLGAGDAFGGALCHGLLSEWP-------LEKVLRFANTAGALVASRLECSTAMPTTDEVEAS  314 (319)
T ss_dssp             ECSSCEEEECCCCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSCSGGGCCCHHHHHHH
T ss_pred             EECCceEEeCCcccCCCCCcCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccCCcCCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999       9999999999999999999998889999999998


Q ss_pred             Hhc
Q 029908          166 LKR  168 (185)
Q Consensus       166 ~~~  168 (185)
                      +++
T Consensus       315 l~~  317 (319)
T 3pl2_A          315 LNQ  317 (319)
T ss_dssp             CC-
T ss_pred             Hhc
Confidence            864

>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis}

Probab=99.97  E-value=4e-30  Score=210.90  Aligned_cols=165  Identities=24%  Similarity=0.247  Sum_probs=144.8

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCCh--HHHHHHHHHhhccccEEEcCHHHHhHhhCCC-CC---CHHH----HHHhcC-CC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSP--EEAREQIMSIWDKAEVIKVSDVELEFLTGSD-KI---DDES----ALSLWH-PN   70 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~--~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~-~~---~~~~----~~~l~~-~g   70 (185)
                      +.++++|++|++||++++.+|...  +...+.+.++++++|++++|++|++.|++.. ..   +.++    +++|.+ .|
T Consensus       155 ~~a~~~g~~v~~D~~~r~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~~~~l~~~~g  234 (346)
T 3ktn_A          155 QKAHAYQKKVCFDFNYRPSLNTANSALFMRQQYERILPYCDIVFGSRRDLVELLGFIPREDLEGEAQETELIQRFMSQYN  234 (346)
T ss_dssp             HHHHHTTCEEEEECCCCGGGCCHHHHHHHHHHHHHHGGGCSEEECCHHHHHHTSCCCCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCEEEEeCCCChHHcCCccHHHHHHHHHHHHHhCCEEEccHHHHHHHhCCCCCccccchHHHHHHHHHHHHhcC
Confidence            567889999999999999999743  5677889999999999999999999999876 32   1122    235555 49


Q ss_pred             CcEEEEEcCCCc-------eEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHh
Q 029908           71 LKLLLVTLGEHG-------CRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACG  143 (185)
Q Consensus        71 ~~~vvit~G~~G-------~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~a  143 (185)
                      ++.|+||+|.+|       ++++++++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|
T Consensus       235 ~~~vvvT~G~~G~~~~~~g~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~~~~l~~g~~-------l~~a~~~A~a~a  307 (346)
T 3ktn_A          235 LEWFAGTTRSHSQNQNYLSGYLYTQNEYQQSEKRPLLNLDRIGAGDAYAAGILYGYSQNWS-------LEKAVTFATVNG  307 (346)
T ss_dssp             CSEEEEEEEEECSSCEEEEEEEECSSCEEECCCEECCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHH
T ss_pred             CCEEEEecCccccccCcceEEEEECCceEEeCCCccccCCCCchhHHHHHHHHHHHHcCCC-------HHHHHHHHHHHH
Confidence            999999999998       888888889999999999999999999999999999999999       999999999999


Q ss_pred             HHHhhccCCCCCCCCHHHHHHHHhcCcchhh
Q 029908          144 ALSTTKKGAIPALPTESEALALLKRSTIIDK  174 (185)
Q Consensus       144 a~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~  174 (185)
                      +.++++.|+.+ +|+++++++++++....++
T Consensus       308 a~~v~~~G~~~-~p~~~ev~~~l~~~~~~~~  337 (346)
T 3ktn_A          308 VLAHTIQGDIP-LTTVKQVNHVLEHPNIDLI  337 (346)
T ss_dssp             HHHTTSSSSCC-CCCHHHHHHHHHCTTCCCC
T ss_pred             HHHhccCCCCC-CCCHHHHHHHHhcCCceEe
Confidence            99999999986 8999999999998876554

>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}

Probab=99.97  E-value=2.5e-30  Score=211.76  Aligned_cols=156  Identities=32%  Similarity=0.449  Sum_probs=130.3

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.++++|++|++||++++..|.+.+...+.+.++++++|++++|++|++.|++.... .+.++.+.+.|++.|+||.|.+
T Consensus       178 ~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~pN~~Ea~~l~g~~~~-~~~~~~l~~~g~~~vvvt~G~~  256 (336)
T 4du5_A          178 DLMRAAGRSVSFDPNLRPTLWATPELMRDAINDLATRADWVLPGMEEGRFLTGETTP-EGVARFYRQLGAKLVVVKLGAE  256 (336)
T ss_dssp             HHHHHTTCEEEEECCCCGGGSSSHHHHHHHHHHHHTTCSEECCBHHHHHHHHCCCSH-HHHHHHHHHTTCSEEEEECGGG
T ss_pred             HHHHHCCCEEEEeCcCCchhcCChHHHHHHHHHHHHhCCEEECCHHHHHHHhCCCCH-HHHHHHHHhcCCCEEEEEecCC
Confidence            467889999999999999999877777888999999999999999999999987532 2334467778999999999999


Q ss_pred             ceEEEEcCceeEecCcccc-cccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHH
Q 029908           82 GCRYYTKSFKGAVDAFRVK-TVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTES  160 (185)
Q Consensus        82 G~~~~~~~~~~~~~~~~~~-~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~  160 (185)
                      |++++++++.+++|+++++ ++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.+++|+++
T Consensus       257 G~~~~~~~~~~~~~~~~v~~vvdttGAGDaf~a~~~~~l~~g~~-------l~~a~~~A~~~aa~~v~~~G~~~~~p~~~  329 (336)
T 4du5_A          257 GAYFDGEAGSGRVAGFPVAEVVDTVGAGDGFAVGVISALLDGLG-------VPEAVKRGAWIGARAVQVLGDSEGLPTRA  329 (336)
T ss_dssp             CEEEEETTEEEEECCCCC-------CHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHC------CCCCHH
T ss_pred             ceEEEECCeEEEeCCccCCCCCCCccchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhccCCCccCCCCHH
Confidence            9999999999999999997 999999999999999999999999       99999999999999999999998899999


Q ss_pred             HHHHH
Q 029908          161 EALAL  165 (185)
Q Consensus       161 ~i~~~  165 (185)
                      |++++
T Consensus       330 ev~~~  334 (336)
T 4du5_A          330 ELNAA  334 (336)
T ss_dssp             HHHCC
T ss_pred             HHHhc
Confidence            99764

>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii}

Probab=99.97  E-value=3.5e-31  Score=215.92  Aligned_cols=158  Identities=26%  Similarity=0.459  Sum_probs=119.9

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.++++|++|++||++++.+|.+.+...+.+.++++++|++++|++|++.|++..... +.++++.+.|++.|++|+|++
T Consensus       169 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~-~~~~~l~~~g~~~vvvt~G~~  247 (327)
T 3hj6_A          169 NYAREQGKIVCFDPCYRKVLWPEGDDGAGVVEEIISRADFVKPSLDDARHLFGPDSPE-NYVKRYLELGVKAVILTLGEE  247 (327)
T ss_dssp             HHHHHTTCEEEEECCCCGGGSCSSSCSHHHHHHHHTTCSEECCBHHHHHHHHTTSCSS-GGGGGGTTTTCSEEEEECSTT
T ss_pred             HHHHHCCCEEEEECCCchhhcCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhCCCCHH-HHHHHHHhCCCCEEEEEECCC
Confidence            5678899999999999988888655667788899999999999999999999874432 334567778999999999999


Q ss_pred             ceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHHH
Q 029908           82 GCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESE  161 (185)
Q Consensus        82 G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~~  161 (185)
                      |++++++++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+..++|++++
T Consensus       248 G~~~~~~~~~~~~~~~~v~vvdttGAGDaf~ag~~~~l~~g~~-------~~~a~~~A~a~aa~~v~~~G~~~~~p~~~e  320 (327)
T 3hj6_A          248 GVIASDGEEIIRIPAFSEDAVDVTGAGDAFWSGFICGLLDGYT-------VKRSIKLGNGVAAFKIRGVGALSPVPSKED  320 (327)
T ss_dssp             CEEEECSSCEEESCSSTTC-----CCHHHHHHHHHHTTSSCST-------THHHHHHHHCCCSSCC--------------
T ss_pred             ceEEEeCCeeEEcCCcccccCCCcChhHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCCCCCCCCCHHH
Confidence            9999999899999999999999999999999999999999999       999999999999999999999888999999


Q ss_pred             HHHHHh
Q 029908          162 ALALLK  167 (185)
Q Consensus       162 i~~~~~  167 (185)
                      ++++++
T Consensus       321 v~~~l~  326 (327)
T 3hj6_A          321 IIKEYN  326 (327)
T ss_dssp             ------
T ss_pred             HHHHhc
Confidence            998874

>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A*

Probab=99.97  E-value=4.8e-30  Score=210.39  Aligned_cols=162  Identities=35%  Similarity=0.482  Sum_probs=141.3

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.++++|++|++||+++..+|.+.+...+.+.++++++|++++|++|++.|++..+.. +.++++.+.|++.||||.|++
T Consensus       166 ~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~Ea~~l~g~~~~~-~~~~~l~~~g~~~VvvT~G~~  244 (339)
T 1tyy_A          166 RRMREAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQ-DARYYLRDLGCDTTIISLGAD  244 (339)
T ss_dssp             HHHHHTTCEEEEECCCCGGGCSCGGGHHHHHHHHHHHCSEEEEEHHHHHHHHCCSSGG-GGSSTTGGGTCSCEEEECGGG
T ss_pred             HHHHHcCCEEEEeCCCCccccCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhCCCCHH-HHHHHHHHcCCCEEEEEECCC
Confidence            5678899999999999988887656677788889999999999999999999875432 223366678999999999999


Q ss_pred             ceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHcc-----CCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCC
Q 029908           82 GCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDD-----QSAIEDEPRLREILKFANACGALSTTKKGAIPAL  156 (185)
Q Consensus        82 G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g-----~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~  156 (185)
                      |++++++++.+++|+++++++|++||||+|+|+|+++|++|     .+       +++|+++|+++|+.++++.|+.+++
T Consensus       245 G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~ag~~~~l~~g~~~~~~~-------l~~a~~~A~a~aa~~v~~~G~~~~~  317 (339)
T 1tyy_A          245 GALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTLSRANCWDHAL-------LAEAISNANACGAMAVTAKGAMTAL  317 (339)
T ss_dssp             CEEEESSSCEEEECCCCCCCSCCTTHHHHHHHHHHHHHTTSSSCCHHH-------HHHHHHHHHHHHHHGGGSSSTTTTC
T ss_pred             ceEEEeCCceEEcCCCCCCcCCCCCchHHHHHHHHHHHHhcccccccc-------HHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999888889999999999999999999999999999997     66       9999999999999999999998888


Q ss_pred             CCHHHHHHHHhcCcc
Q 029908          157 PTESEALALLKRSTI  171 (185)
Q Consensus       157 ~~~~~i~~~~~~~~~  171 (185)
                      |+++++++++++...
T Consensus       318 p~~~ev~~~l~~~~~  332 (339)
T 1tyy_A          318 PFPDQLNTFLSSHSL  332 (339)
T ss_dssp             CCHHHHHHHHC----
T ss_pred             CCHHHHHHHHhcCcc
Confidence            999999999987664

>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A

Probab=99.96  E-value=2.4e-29  Score=203.35  Aligned_cols=157  Identities=31%  Similarity=0.392  Sum_probs=134.2

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.++++|+++++||++++.+|. .+...+.+.++++++|++++|++|+..|++..    +++.+  +.|++.|++|.|++
T Consensus       151 ~~a~~~g~~v~~D~~~~~~~~~-~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~----~~~~~--~~g~~~vvvt~G~~  223 (309)
T 1v1a_A          151 EEAKRRGVRVSLDVNYRQTLWS-PEEARGFLERALPGVDLLFLSEEEAELLFGRV----EEALR--ALSAPEVVLKRGAK  223 (309)
T ss_dssp             HHHHTTTCEEEEECCCCTTTSC-HHHHHHHHHHHGGGCSEEEEEHHHHHHHHSSH----HHHHH--HTCCSEEEEECGGG
T ss_pred             HHHHHcCCEEEEeCCCCcccCC-HHHHHHHHHHHHHhCCEEECcHHHHHHHhCCH----HHHHH--hcCCCEEEEEecCC
Confidence            4677889999999999988885 56667788899999999999999999999764    22223  57999999999999


Q ss_pred             ceEEEEc-CceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHH
Q 029908           82 GCRYYTK-SFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTES  160 (185)
Q Consensus        82 G~~~~~~-~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~  160 (185)
                      |+++ ++ ++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.+++|+++
T Consensus       224 G~~~-~~~~~~~~~~~~~v~vvdttGAGDaf~a~~~~~l~~g~~-------~~~a~~~a~~~aa~~v~~~G~~~~~~~~~  295 (309)
T 1v1a_A          224 GAWA-FVDGRRVEGSAFAVEAVDPVGAGDAFAAGYLAGAVWGLP-------VEERLRLANLLGASVAASRGDHEGAPYRE  295 (309)
T ss_dssp             CEEE-EETTEEEECCCCCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSTTTTTCCCHH
T ss_pred             CeeE-ecCCcEEEeCCCCCCcCCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcCCCCCcCCCCHH
Confidence            9998 65 677889999999999999999999999999999999       99999999999999999999988889999


Q ss_pred             HHHHHHhcCcchh
Q 029908          161 EALALLKRSTIID  173 (185)
Q Consensus       161 ~i~~~~~~~~~~~  173 (185)
                      ++++++++..-++
T Consensus       296 ~v~~~~~~~~~~~  308 (309)
T 1v1a_A          296 DLEVLLKATQTFM  308 (309)
T ss_dssp             HHTTCC-------
T ss_pred             HHHHHHhhcCCcc
Confidence            9988876654443

>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens}

Probab=99.96  E-value=4.8e-29  Score=203.33  Aligned_cols=158  Identities=22%  Similarity=0.266  Sum_probs=140.0

Q ss_pred             HHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCcEEEEEcC
Q 029908            4 AKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLKLLLVTLG   79 (185)
Q Consensus         4 a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~~vvit~G   79 (185)
                      ++++|++|++||+.        ....+.+.++++++|++++|++|++.|++....+.++.    +++.+.|++.|+||.|
T Consensus       156 a~~~~~~v~~D~~~--------~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G  227 (328)
T 3kzh_A          156 NFKDKTNFILDPVS--------AEKASWVKHLIKDFHTIKPNRHEAEILAGFPITDTDDLIKASNYFLGLGIKKVFISLD  227 (328)
T ss_dssp             HHTTTSEEEEECCS--------HHHHHTSTTTGGGCSEECCBHHHHHHHHTSCCCSHHHHHHHHHHHHHHTCCEEEEECG
T ss_pred             HhhcCCcEEEEeCC--------HHHHHHHHHHhcCCcEEeCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            66789999999984        22345567789999999999999999999775544332    3566679999999999


Q ss_pred             CCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCH
Q 029908           80 EHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTE  159 (185)
Q Consensus        80 ~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~  159 (185)
                      .+|++++++++.+++|+++++++|++||||+|+|||+++|++|.+       +++|+++|+++|+.++++.|+.++.|++
T Consensus       228 ~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaf~ag~~~~l~~g~~-------~~~a~~~A~a~aa~~v~~~G~~~~~~~~  300 (328)
T 3kzh_A          228 ADGIFYNDGVSCGKIKATEVDVKNVTGAGDSFVAGLGYGYMNKMP-------IEDIVKFAMTMSNITISHEETIHPDMAL  300 (328)
T ss_dssp             GGCEEEECSSCEEEEEESSCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSSSSCTTCSH
T ss_pred             CCCEEEEeCCceEEecCCCcccCCCCChhHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCCCCCCcCCH
Confidence            999999999999999999999999999999999999999999999       9999999999999999999999899999


Q ss_pred             HHHHHHHhcCcchhhhh
Q 029908          160 SEALALLKRSTIIDKIM  176 (185)
Q Consensus       160 ~~i~~~~~~~~~~~~~~  176 (185)
                      +++++++++...++|..
T Consensus       301 ~~v~~~~~~~~~~~~~~  317 (328)
T 3kzh_A          301 DTVLAKLEKTTWEEEKY  317 (328)
T ss_dssp             HHHHHHHHTCCEEEEEE
T ss_pred             HHHHHHhhhcchhhhhc
Confidence            99999999998887754

>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A*

Probab=99.96  E-value=1.4e-28  Score=199.15  Aligned_cols=150  Identities=31%  Similarity=0.422  Sum_probs=134.9

Q ss_pred             EEcCCCCCCCCCChHHHHHHHHHhhcccc--EEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCCceEEEEcC
Q 029908           12 SYDPNLRLPLWPSPEEAREQIMSIWDKAE--VIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKS   89 (185)
Q Consensus        12 ~~D~~~~~~~~~~~~~~~~~~~~~l~~~d--ii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~   89 (185)
                      ++||+.++.+|.+.+...+.+.++++++|  ++++|++|++.|++.... .+.++++.+.|++.|++|+|++|+++++++
T Consensus       160 ~~D~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~N~~E~~~l~g~~~~-~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~  238 (313)
T 2v78_A          160 SLDTNIRPKLWSSLEKAKETILSILKKYDIEVLITDPDDTKILLDVTDP-DEAYRKYKELGVKVLLYKLGSKGAIAYKDN  238 (313)
T ss_dssp             EEECCCCGGGSSCHHHHHHHHHHHHHHSCEEEEEECHHHHHHHHSCCCH-HHHHHHHHHTTEEEEEEECGGGCEEEEETT
T ss_pred             CcCCcCChhhcCCHHHHHHHHHHHHHhcCeeEEECcHHHHHHHhCCCCH-HHHHHHHHhCCCCEEEEEECCCCcEEeeCC
Confidence            99999998889766677788889999999  999999999999986432 233446777899999999999999999888


Q ss_pred             ceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHHHHHHHHhcC
Q 029908           90 FKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRS  169 (185)
Q Consensus        90 ~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~~i~~~~~~~  169 (185)
                      +.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.+++|++++++++++++
T Consensus       239 ~~~~~~~~~v~vvDttGAGDaF~ag~~~~l~~g~~-------~~~a~~~a~~~aa~~v~~~G~~~~~~~~~~v~~~~~~~  311 (313)
T 2v78_A          239 VKAFKDAYKVPVEDPTGAGDAMAGTFVSLYLQGKD-------IEYSLAHGIAASTLVITVRGDNELTPTLEDAERFLNEF  311 (313)
T ss_dssp             EEEEECCCCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSSSSTTCCCHHHHHHHHHHC
T ss_pred             cEEEeCCCcCCccCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Confidence            88899999999999999999999999999999999       99999999999999999999988889999999998764

>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1

Probab=99.96  E-value=4.1e-28  Score=199.38  Aligned_cols=158  Identities=26%  Similarity=0.354  Sum_probs=136.9

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCC---------CHHH----HHHhcC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI---------DDES----ALSLWH   68 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~---------~~~~----~~~l~~   68 (185)
                      +.++++|+++++||++++.+|. .....+.+.++++++|++++|++|+..|++....         +.++    ++++.+
T Consensus       164 ~~a~~~g~~v~~Dp~~~~~~~~-~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~  242 (351)
T 2afb_A          164 KVANEKGVTVSCDLNYRARLWT-KEEAQKVMIPFMEYVDVLIANEEDIEKVLGISVEGLDLKTGKLNREAYAKIAEEVTR  242 (351)
T ss_dssp             HHHHHHTCEEEEECCCCTTTCC-HHHHHHHHHHHGGGCSEEEECHHHHHHHHCCCCSCC-------CHHHHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEeCCCchhcCC-hHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCcccccccccccchhhHHHHHHHHHH
Confidence            4678889999999999988886 4456778889999999999999999999987653         2222    235555


Q ss_pred             C-CCcEEEEEcCCCce--------EEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHH
Q 029908           69 P-NLKLLLVTLGEHGC--------RYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFA  139 (185)
Q Consensus        69 ~-g~~~vvit~G~~G~--------~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a  139 (185)
                      . |++.|+||+|.+|+        +++++++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|
T Consensus       243 ~~g~~~vvvT~G~~G~~~~~~~g~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~~~~l~~g~~-------l~~a~~~A  315 (351)
T 2afb_A          243 KYNFKTVGITLRESISATVNYWSVMVFENGQPHFSNRYEIHIVDRVGAGDSFAGALIYGSLMGFD-------SQKKAEFA  315 (351)
T ss_dssp             HHCCSEEEEEEEECSCSSEEEEEEEEEETTEEEECCCEEEECSCCTTHHHHHHHHHHHHHHHTCC-------HHHHHHHH
T ss_pred             HcCCCEEEEEeCCcCccccccceeEEEeCCcEEEcCCCCCccCCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHH
Confidence            3 99999999999975        67777778899999999999999999999999999999999       99999999


Q ss_pred             HHHhHHHhhccCCCCCCCCHHHHHHHHhc
Q 029908          140 NACGALSTTKKGAIPALPTESEALALLKR  168 (185)
Q Consensus       140 ~~~aa~~~~~~g~~~~~~~~~~i~~~~~~  168 (185)
                      +++|+.++++.|+.. +|+++++++++++
T Consensus       316 ~~~aa~~v~~~G~~~-~~~~~ev~~~l~~  343 (351)
T 2afb_A          316 AAASCLKHTIPGDFV-VLSIEEIEKLASG  343 (351)
T ss_dssp             HHHHHHHTTSSSSSC-CCCHHHHHHHHTC
T ss_pred             HHHHHHHhCCCCCCC-CCCHHHHHHHHhc
Confidence            999999999999874 7999999999876

>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A*

Probab=99.96  E-value=3.2e-28  Score=198.19  Aligned_cols=158  Identities=23%  Similarity=0.322  Sum_probs=133.1

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.+++++ .+++|++.++.+|..    .+.+.++++++|++++|++|++.|++.... .+.+..+.+.|++.|+||.|.+
T Consensus       160 ~~a~~~~-~~~~d~~~~~~~~~~----~~~~~~~l~~~dil~~N~~E~~~l~g~~~~-~~~~~~l~~~g~~~vvvt~G~~  233 (325)
T 3h49_A          160 TQAKARQ-MIICADMIKPRLNET----LDDICEALSYVDYLFPNFAEAKLLTGKETL-DEIADCFLACGVKTVVIKTGKD  233 (325)
T ss_dssp             HHHHHTT-CEEEEEECCCSSCCC----HHHHHHHHTTCSEEECBHHHHHHHHTCSSH-HHHHHHHHTTTCSEEEEECTTS
T ss_pred             HHHHhcC-CEEEecCCchhhhhH----HHHHHHHHhhCCEEecCHHHHHHHhCCCCH-HHHHHHHHHcCCCEEEEEeCCC
Confidence            4677888 688888888877753    344677889999999999999999987642 2233467788999999999999


Q ss_pred             ceEEEEcCceeEecCccc-ccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHH
Q 029908           82 GCRYYTKSFKGAVDAFRV-KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTES  160 (185)
Q Consensus        82 G~~~~~~~~~~~~~~~~~-~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~  160 (185)
                      |++++++++.+++|++++ +++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.+++|+++
T Consensus       234 G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~~~~l~~g~~-------~~~a~~~A~~~aa~~v~~~G~~~~~p~~~  306 (325)
T 3h49_A          234 GCFIKRGDMTMKVPAVAGITAIDTIGAGDNFASGFIAALLEGKN-------LRECARFANATAAISVLSVGATTGVKNRK  306 (325)
T ss_dssp             CEEEEETTEEEEECCCSSCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSSSSSSCSSSH
T ss_pred             CeEEEECCeEEEecCcCCCCCcCCCChhHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcccCCCCCCCCHH
Confidence            999999998899999886 8999999999999999999999999       99999999999999999999998899999


Q ss_pred             HHHHHHhcCcch
Q 029908          161 EALALLKRSTII  172 (185)
Q Consensus       161 ~i~~~~~~~~~~  172 (185)
                      +++++++++..+
T Consensus       307 ev~~~l~~~~~~  318 (325)
T 3h49_A          307 LVEQLLEEYEGE  318 (325)
T ss_dssp             HHHTC-------
T ss_pred             HHHHHHHhccCC
Confidence            999999877643

>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A

Probab=99.95  E-value=3.7e-28  Score=197.22  Aligned_cols=152  Identities=24%  Similarity=0.291  Sum_probs=133.2

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhc-cccEEEcCHHHHhHhhCCCCC-CHHHHHHhcCCCCcEEEEEcC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWD-KAEVIKVSDVELEFLTGSDKI-DDESALSLWHPNLKLLLVTLG   79 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~-~~dii~~n~~E~~~l~~~~~~-~~~~~~~l~~~g~~~vvit~G   79 (185)
                      +.++++|+++++||+.        +    .+.+.++ ++|++++|++|++.|++.... +.+.+.++.+. ++.|++|.|
T Consensus       157 ~~a~~~g~~v~~D~~~--------~----~l~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~-~~~vvvt~G  223 (320)
T 3ie7_A          157 RTVKATGAFLGCDNSG--------E----YLNLAVEMGVDFIKPNEDEVIAILDEKTNSLEENIRTLAEK-IPYLVVSLG  223 (320)
T ss_dssp             HHHHHHTCEEEEECCH--------H----HHHHHHHHCCSEECCBTTGGGGGSCTTCCCHHHHHHHHTTT-CSEEEEECG
T ss_pred             HHHHhcCCEEEEECCh--------H----HHHHHHhcCCeEEeeCHHHHHHHhCCCcCCCHHHHHHHHhh-CCEEEEEcC
Confidence            5678899999999972        2    3444554 999999999999999998765 34555555555 999999999


Q ss_pred             CCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCH
Q 029908           80 EHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTE  159 (185)
Q Consensus        80 ~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~  159 (185)
                      ++|++++++++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+  ..|++
T Consensus       224 ~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~~~~l~~g~~-------~~~a~~~A~a~aa~~v~~~G~--~~~~~  294 (320)
T 3ie7_A          224 AKGSICAHNGKLYQVIPPKVQERNDTGAGDVFVGAFIAGLAMNMP-------ITETLKVATGCSASKVMQQDS--SSFDL  294 (320)
T ss_dssp             GGCEEEEETTEEEEEECCCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSSS--SCCCH
T ss_pred             CCceEEEeCCcEEEEeCCccCCCCCcCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhCcCC--CCCCH
Confidence            999999999999999999999999999999999999999999999       999999999999999999994  67999


Q ss_pred             HHHHHHHhcCcchhhh
Q 029908          160 SEALALLKRSTIIDKI  175 (185)
Q Consensus       160 ~~i~~~~~~~~~~~~~  175 (185)
                      ++++++++++.+++.+
T Consensus       295 ~ev~~~~~~~~i~~~~  310 (320)
T 3ie7_A          295 EAAGKLKNQVSIIQLE  310 (320)
T ss_dssp             HHHHHHGGGCEEEECC
T ss_pred             HHHHHHhhCeEEEEcc
Confidence            9999999999986643

>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601}

Probab=99.95  E-value=4.6e-28  Score=199.00  Aligned_cols=159  Identities=19%  Similarity=0.279  Sum_probs=130.2

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHH---HhcC-----CCCcE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL---SLWH-----PNLKL   73 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~---~l~~-----~g~~~   73 (185)
                      +.|+++|++|+|||++|+.+|+ .+..++.+.++++++|++++|++|+..+++......+...   ....     .+.+.
T Consensus       176 ~~ak~~g~~v~~D~n~r~~lw~-~~~~~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (351)
T 4gm6_A          176 REAKRNGIKISFDMNYRAKLWE-LEAAKRAYQQLLPLVDYCSAGQMDAVAFFEISSETTDYYQAMHDKYPNIELFYATKR  254 (351)
T ss_dssp             HHHHHTTCEEEEECCCCTTTSC-HHHHHHHHHHHGGGCSEEECCHHHHHHTSCCCTTCSCHHHHHHHHCTTCCEEEEEEE
T ss_pred             HHHHHcCCCcccCCCcCchhhh-hhhHHHHHHHHHHhCCccccCHHHHHHHhCCCCchhHHHHHHHhhhhhhhhhhcccc
Confidence            6789999999999999999996 6677888999999999999999999999987654332222   1111     23344


Q ss_pred             EEEEcCC--CceEEEEcCceeEecCccc-ccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhcc
Q 029908           74 LLVTLGE--HGCRYYTKSFKGAVDAFRV-KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKK  150 (185)
Q Consensus        74 vvit~G~--~G~~~~~~~~~~~~~~~~~-~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~  150 (185)
                      ++++.+.  .|..++..++.++.|++++ +++|||||||+|+|||+++|++|.+       +++|+++|+++|+++|++.
T Consensus       255 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~VvDttGAGDaF~ag~l~~l~~g~~-------~~~al~~A~aaaal~v~~~  327 (351)
T 4gm6_A          255 TVISASHHLLQGHLWTQGECWESEEYAIYPIVDRVGGGDAYTAAVLHGILSEWR-------PDETVKFATAAAGLKHSIH  327 (351)
T ss_dssp             EEEETTEEEEEEEEEETTEEEEEEEEEECSCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHTTSS
T ss_pred             ceeeeccCCceEEEEeCCceEEeCCCCCCCcCCCCChhHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHhCCC
Confidence            5555543  3567778888888887776 8999999999999999999999999       9999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHHhcC
Q 029908          151 GAIPALPTESEALALLKRS  169 (185)
Q Consensus       151 g~~~~~~~~~~i~~~~~~~  169 (185)
                      |+.+.+| .+++++++.+.
T Consensus       328 Ga~~~~~-~~ev~~~l~~~  345 (351)
T 4gm6_A          328 GDINPFD-EKTIADFAADK  345 (351)
T ss_dssp             SSSCCCC-HHHHHHHHHC-
T ss_pred             CCCCCCC-HHHHHHHHhCC
Confidence            9988775 58999999754

>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A

Probab=99.95  E-value=2.3e-28  Score=197.05  Aligned_cols=152  Identities=24%  Similarity=0.384  Sum_probs=132.0

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.++++| ++++||+.+...|.     .+.+.++++++|++++|++|+..|++....+.+   ++++. ++.|++|.|++
T Consensus       149 ~~a~~~g-~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~---~l~~~-~~~vvvt~G~~  218 (302)
T 2c4e_A          149 KKAYGNN-LVSFDPGQDLPQYS-----KEMLLEIIEHTNFLFMNKHEFERASNLLNFEID---DYLER-VDALIVTKGSK  218 (302)
T ss_dssp             HHHBTTB-EEEECCGGGGGGCC-----HHHHHHHHHTCSEEEEEHHHHHHHHHHHTCCHH---HHHTT-CSEEEEECGGG
T ss_pred             HHHHhcC-CEEEeCchhhhhhh-----HHHHHHHHhcCCEEEcCHHHHHHHhCCCCccHH---HHHhc-CCEEEEEECCC
Confidence            4577789 99999996544443     455678899999999999999999876544332   56666 89999999999


Q ss_pred             ceEEEEcCceeEecCcccc-cccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHH
Q 029908           82 GCRYYTKSFKGAVDAFRVK-TVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTES  160 (185)
Q Consensus        82 G~~~~~~~~~~~~~~~~~~-~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~  160 (185)
                      |++++++++.+++|+++++ ++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+...+|+++
T Consensus       219 G~~~~~~~~~~~~~~~~v~~~vdt~GAGDaf~a~~~~~l~~g~~-------~~~a~~~a~~~aa~~~~~~G~~~~~p~~~  291 (302)
T 2c4e_A          219 GSVIYTKDKKIEIPCIKAGKVIDPTGAGDSYRAGFLSAYVKGYD-------LEKCGLIGAATASFVVEAKGCQTNLPTWD  291 (302)
T ss_dssp             CEEEECSSCEEEECCCCCSCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHTTSSSSSTTCCCHH
T ss_pred             ceEEEeCCcEEEeCCccCCcCCcCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHccccccccCCCHH
Confidence            9999988888999999998 999999999999999999999999       99999999999999999999988889999


Q ss_pred             HHHHHHhcCc
Q 029908          161 EALALLKRST  170 (185)
Q Consensus       161 ~i~~~~~~~~  170 (185)
                      ++++++++..
T Consensus       292 ev~~~~~~~~  301 (302)
T 2c4e_A          292 KVVERLEKHR  301 (302)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHhcC
Confidence            9999987653

>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*

Probab=99.95  E-value=7.6e-28  Score=196.48  Aligned_cols=145  Identities=27%  Similarity=0.360  Sum_probs=131.3

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.++++|++|++||++++.+|.+.+...+.+.++++++|++++|++|++.|++..+. .+.++++.+.|++.||||.|.+
T Consensus       172 ~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~-~~~~~~l~~~g~~~vvvt~G~~  250 (328)
T 4e69_A          172 AQARATGRTIAFDPNLRPRLWAGTGEMTETIMQGAAVSDIALPSFEDEAAWFGDAGP-DATADRYARAGVRSVVVKNGPH  250 (328)
T ss_dssp             HHHHHTTCEEEEECCCCGGGCSCHHHHHHHHHHHHTTCSEECCBHHHHHHHHTCSSH-HHHHHHHHTTTCSEEEEBCTTS
T ss_pred             HHHHhCCCEEEEeCCCChhhcCCHHHHHHHHHHHHHhCCEEeCCHHHHHHHcCCCCH-HHHHHHHHhcCCCEEEEEeCCC
Confidence            467889999999999998899877788889999999999999999999999987632 2334477788999999999999


Q ss_pred             ceEEEEcCceeEecCcc-cccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCC
Q 029908           82 GCRYYTKSFKGAVDAFR-VKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIP  154 (185)
Q Consensus        82 G~~~~~~~~~~~~~~~~-~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~  154 (185)
                      |++++++++.+++|+++ ++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.+
T Consensus       251 G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~-------l~~a~~~A~~~aa~~v~~~Ga~~  317 (328)
T 4e69_A          251 AVHFLQDGRRGRVPVPPVAQVVDTTAAGDSFNAGLLDSVLAGQP-------LETAIAAAAALAGQVVQGKGALV  317 (328)
T ss_dssp             CEEEEETTEEEEECCCCCCSCCCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSSSSC
T ss_pred             CeEEEeCCceEEecCCCCCCccCCCChhHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHccCCCcC
Confidence            99999999899999986 78999999999999999999999999       99999999999999999999874

>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*

Probab=99.95  E-value=8.9e-28  Score=194.20  Aligned_cols=148  Identities=25%  Similarity=0.439  Sum_probs=132.6

Q ss_pred             EEcCCCCCCCCCChHHHHHHHHHhhc--cccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCCceEEEEcC
Q 029908           12 SYDPNLRLPLWPSPEEAREQIMSIWD--KAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKS   89 (185)
Q Consensus        12 ~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~   89 (185)
                      ++||+.+..+|+ .+...+.+.++++  ++|++++|++|++.|++.... .+.++++.+. ++.|++|+|++|+++++++
T Consensus       160 ~~D~~~~~~~~~-~~~~~~~~~~~l~~~~~dil~~N~~E~~~l~g~~~~-~~~~~~l~~~-~~~vvvt~G~~G~~~~~~~  236 (311)
T 2dcn_A          160 SFDTNIRLKLWS-AEEAKREILKLLSKFHLKFLITDTDDSKIILGESDP-DKAAKAFSDY-AEIIVMKLGPKGAIVYYDG  236 (311)
T ss_dssp             EEECCCCTTTSC-HHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHSCCCH-HHHHHHHTTT-EEEEEEEEETTEEEEEETT
T ss_pred             CcCccCchhhCC-hHHHHHHHHHHHhhcCCcEEECCHHHHHHHhCCCCH-HHHHHHHHHh-CCEEEEEECCCCcEEEeCC
Confidence            899999988887 5666778889999  999999999999999986432 2334467777 8999999999999999988


Q ss_pred             ceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHHHHHHHHhcC
Q 029908           90 FKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRS  169 (185)
Q Consensus        90 ~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~~i~~~~~~~  169 (185)
                      +.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.+++|++++++++++++
T Consensus       237 ~~~~~~~~~v~vvdttGAGDaf~a~~~~~l~~g~~-------~~~a~~~a~~~aa~~v~~~G~~~~~~~~~~v~~~~~~~  309 (311)
T 2dcn_A          237 KKYYSSGYQVPVEDVTGAGDALGGTFLSLYYKGFE-------MEKALDYAIVASTLNVMIRGDQENLPTTKDIETFLREM  309 (311)
T ss_dssp             EEEEEECCCCCCSCCTTHHHHHHHHHHHHHTTTCC-------HHHHHHHHHHHHHHHTTSSSSSTTCCCHHHHHHHHHHC
T ss_pred             cEEEeCCccccccCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Confidence            88899999999999999999999999999999999       99999999999999999999998889999999998764

>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*

Probab=99.95  E-value=7.8e-28  Score=196.49  Aligned_cols=150  Identities=19%  Similarity=0.221  Sum_probs=130.4

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhc---cccEEEcCHHHHhHhhCCCCC-CHHH----HHHhcCCCCcE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWD---KAEVIKVSDVELEFLTGSDKI-DDES----ALSLWHPNLKL   73 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~---~~dii~~n~~E~~~l~~~~~~-~~~~----~~~l~~~g~~~   73 (185)
                      +.++++|++|++||+.        .    .+.++++   ++|++++|++|+..|++.... +.++    +.++.+.|++.
T Consensus       171 ~~a~~~g~~v~~D~~~--------~----~l~~~l~~~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~l~~~g~~~  238 (330)
T 2jg1_A          171 ERCQNKGVPVILDCSG--------A----TLQTVLENPYKPTVIKPNISELYQLLNQPLDESLESLKQAVSQPLFEGIEW  238 (330)
T ss_dssp             HHHHTTTCCEEEECCH--------H----HHHHHHTSSSCCSEECCBHHHHHHHTTSCCCCCHHHHHHHHHSGGGTTCSE
T ss_pred             HHHHHCCCEEEEECCc--------H----HHHHHHhccCCceEEEeCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence            5678899999999972        2    3456666   899999999999999987543 2222    23667789999


Q ss_pred             EEEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCC
Q 029908           74 LLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAI  153 (185)
Q Consensus        74 vvit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~  153 (185)
                      |++|+|++|++++++++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.
T Consensus       239 VvvT~G~~Ga~~~~~~~~~~~~~~~v~vvDttGAGDaF~ag~~~~l~~g~~-------l~~al~~A~a~aa~~v~~~G~~  311 (330)
T 2jg1_A          239 IIVSLGAQGAFAKHNHTFYRVNIPTISVLNPVGSGDSTVAGITSAILNHEN-------DHDLLKKANTLGMLNAQEAQTG  311 (330)
T ss_dssp             EEEECGGGCEEEEETTEEEEEECCCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSSSS
T ss_pred             EEEeecCCceEEEeCCCEEEEeCCCccccCCCcHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCcCCC
Confidence            999999999999998888899999999999999999999999999999999       9999999999999999999984


Q ss_pred             CCCCCHHHHHHHHhcCcch
Q 029908          154 PALPTESEALALLKRSTII  172 (185)
Q Consensus       154 ~~~~~~~~i~~~~~~~~~~  172 (185)
                        .|++++++++++++.++
T Consensus       312 --~~~~~ev~~~~~~i~~~  328 (330)
T 2jg1_A          312 --YVNLNNYDDLFNQIEVL  328 (330)
T ss_dssp             --CCCGGGHHHHHTTCEEE
T ss_pred             --CCCHHHHHHHHhceEEE
Confidence              68999999999988764

>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*

Probab=99.95  E-value=1.8e-27  Score=192.24  Aligned_cols=151  Identities=32%  Similarity=0.507  Sum_probs=132.0

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHH----HHHhcCCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDES----ALSLWHPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~----~~~l~~~g~~~vvit   77 (185)
                      +.++++|++|++||+++.. |.         .++++++|++++|++|++.|++....+.++    ++++.+.|++.|++|
T Consensus       154 ~~a~~~g~~v~~D~~~~~~-~~---------~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt  223 (309)
T 1rkd_A          154 KIAHQNKTIVALNPAPARE-LP---------DELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLIT  223 (309)
T ss_dssp             HHHHHTTCEEEECCCSCCC-CC---------HHHHTTCSEECCCHHHHHHHHSCCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHcCCEEEEECCcccc-ch---------HHHHhhCCEEEcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence            4678899999999987632 21         457889999999999999999876543322    236667899999999


Q ss_pred             cCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCC
Q 029908           78 LGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALP  157 (185)
Q Consensus        78 ~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~  157 (185)
                      .|++|++++++++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.+.+|
T Consensus       224 ~G~~G~~~~~~~~~~~~~~~~v~~vdt~GAGD~f~a~~~~~l~~g~~-------~~~a~~~a~~~aa~~~~~~G~~~~~p  296 (309)
T 1rkd_A          224 LGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALLEEKP-------LPEAIRFAHAAAAIAVTRKGAQPSVP  296 (309)
T ss_dssp             CGGGCEEEEETTEEEEECCCCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSSSGGGCC
T ss_pred             ECCCcEEEEeCCceEEcCCCCCCcCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHcCCCCccCCCC
Confidence            99999999998888899999999999999999999999999999999       99999999999999999999987789


Q ss_pred             CHHHHHHHHhcC
Q 029908          158 TESEALALLKRS  169 (185)
Q Consensus       158 ~~~~i~~~~~~~  169 (185)
                      +++++++++++.
T Consensus       297 ~~~ev~~~~~~~  308 (309)
T 1rkd_A          297 WREEIDAFLDRQ  308 (309)
T ss_dssp             CHHHHHHHHHTC
T ss_pred             CHHHHHHHHhcC
Confidence            999999998754

>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}

Probab=99.95  E-value=5.1e-28  Score=194.90  Aligned_cols=146  Identities=27%  Similarity=0.458  Sum_probs=129.9

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHH----HHHhcCCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDES----ALSLWHPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~----~~~l~~~g~~~vvit   77 (185)
                      +.++++|++|++||+...          +.+.++++++|++++|++|++.|++....+.++    ++++.+.|++.|++|
T Consensus       153 ~~a~~~~~~v~~D~~~~~----------~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt  222 (304)
T 3ry7_A          153 EIAKAHGVTTVLNPAPAK----------ALPNELLSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVLIT  222 (304)
T ss_dssp             HHHHHTTCEEEEECCSCC----------CCCHHHHTTCSEECCBHHHHHHHHSCCCCSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHcCCEEEEeCCccc----------cccHHHHHhCCEEecCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCEEEEE
Confidence            568889999999998642          134568899999999999999999987654333    236667899999999


Q ss_pred             cCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHcc-CCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCC
Q 029908           78 LGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDD-QSAIEDEPRLREILKFANACGALSTTKKGAIPAL  156 (185)
Q Consensus        78 ~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g-~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~  156 (185)
                      .|.+|++++++++.+++|+++++++|++||||+|+|+|+++|++| .+       +++|+++|+++|+.++++.|+.+++
T Consensus       223 ~G~~G~~~~~~~~~~~~~~~~v~~vdttGAGDaf~a~~~~~l~~g~~~-------~~~a~~~A~~~aa~~~~~~G~~~~~  295 (304)
T 3ry7_A          223 LGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGAFVSRLNKSQDN-------LADAIDFGNKASSLTVQKHGAQASI  295 (304)
T ss_dssp             CGGGCEEEECSSCEEEECCSSCCSSCCSSHHHHHHHHHHHHCCTTCTT-------HHHHHHHHHHHHHTTSCCCCTGGGC
T ss_pred             eCCCceEEEECCeeEEecCCCcccCCCCCchHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHHhCCCCccccC
Confidence            999999999999999999999999999999999999999999999 99       9999999999999999999999889


Q ss_pred             CCHHHHHH
Q 029908          157 PTESEALA  164 (185)
Q Consensus       157 ~~~~~i~~  164 (185)
                      |+++|+++
T Consensus       296 p~~~ev~~  303 (304)
T 3ry7_A          296 PLLEEVNQ  303 (304)
T ss_dssp             CCHHHHHT
T ss_pred             CCHHHHhh
Confidence            99999975

>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A*

Probab=99.95  E-value=5.2e-28  Score=197.27  Aligned_cols=153  Identities=26%  Similarity=0.395  Sum_probs=132.1

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.++++|++|++||+++..+|.     .+.+.++++++|++++|++|+..|++....+.+.   +.+ +++.|++|+|++
T Consensus       154 ~~a~~~g~~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~---l~~-~~~~vvvT~G~~  224 (326)
T 3b1n_A          154 EELAQAGVPFIFDPGQGLPLFD-----GATLRRSIELATYIAVNDYEAKLVCDKTGWSEDE---IAS-RVQALIITRGEH  224 (326)
T ss_dssp             HHHHHHTCCEEECCGGGGGGCC-----HHHHHHHHHHCSEEEEEHHHHHHHHHHHCCCHHH---HHT-TSSEEEEECGGG
T ss_pred             HHHHHCCCEEEEeCchhhhhcc-----HHHHHHHHHhCCEEecCHHHHHHHhCCCCCCHHH---HHh-cCCEEEEecCCC
Confidence            5678889999999998776664     3456778899999999999999998754433333   333 388999999999


Q ss_pred             ceEEEEcCceeEecCcccc-cccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHH
Q 029908           82 GCRYYTKSFKGAVDAFRVK-TVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTES  160 (185)
Q Consensus        82 G~~~~~~~~~~~~~~~~~~-~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~  160 (185)
                      |++++++++.+++|+++++ ++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+...+|+++
T Consensus       225 Ga~~~~~~~~~~~~~~~v~~vvDttGAGDaF~ag~l~~l~~g~~-------~~~a~~~A~~~aa~~v~~~G~~~~~~~~~  297 (326)
T 3b1n_A          225 GATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFD-------WATAGRLASLMGALKIAHQGPQTYAPTRA  297 (326)
T ss_dssp             CEEEEETTEEEEECCCCCSCCCCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSSTTCCCCCHH
T ss_pred             ceEEEECCcEEEeCCCCCCCCCCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence            9999998888899999986 789999999999999999999999       99999999999999999999988889999


Q ss_pred             HHHHHHhcCc
Q 029908          161 EALALLKRST  170 (185)
Q Consensus       161 ~i~~~~~~~~  170 (185)
                      ++++++++..
T Consensus       298 ev~~~l~~~~  307 (326)
T 3b1n_A          298 EIDARFETAF  307 (326)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999987643

>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A*

Probab=99.95  E-value=6.5e-28  Score=197.24  Aligned_cols=156  Identities=19%  Similarity=0.200  Sum_probs=135.1

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.++++|+++++||+++..+|.     .+.+.++++++|++++|++|++.|++....+.+   .+.+. ++.|++|.|++
T Consensus       167 ~~a~~~g~~v~~D~~~~~~~~~-----~~~l~~~l~~~dil~~N~~E~~~l~g~~~~~~~---~l~~~-~~~vvvt~G~~  237 (334)
T 2pkf_A          167 EECRKLGLAFAADPSQQLARLS-----GEEIRRLVNGAAYLFTNDYEWDLLLSKTGWSEA---DVMAQ-IDLRVTTLGPK  237 (334)
T ss_dssp             HHHHHHTCCEEEECGGGGGTSC-----HHHHHTTTTTCSEEEEEHHHHHHHHHHHCCCHH---HHHTT-CSCEEEECGGG
T ss_pred             HHHHhcCCeEEEeccchhhhhh-----HHHHHHHHhcCCEEecCHHHHHHHhccCCCCHH---HHHhc-CCEEEEEeCCC
Confidence            4678889999999998877774     345678999999999999999999875443333   23333 88999999999


Q ss_pred             ceEEEEcCc-eeEecCcccc-cccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCH
Q 029908           82 GCRYYTKSF-KGAVDAFRVK-TVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTE  159 (185)
Q Consensus        82 G~~~~~~~~-~~~~~~~~~~-~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~  159 (185)
                      |++++++++ .+++|+++++ ++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.+.+|++
T Consensus       238 G~~~~~~~~~~~~~~~~~v~~vvDttGAGDaF~a~~~~~l~~g~~-------~~~a~~~A~~~aa~~v~~~G~~~~~p~~  310 (334)
T 2pkf_A          238 GVDLVEPDGTTIHVGVVPETSQTDPTGVGDAFRAGFLTGRSAGLG-------LERSAQLGSLVAVLVLESTGTQEWQWDY  310 (334)
T ss_dssp             CEEEECTTSCEEEECCCCCSCCCCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSSSSCCCCCH
T ss_pred             CeEEEeCCCcEEEeCCcCCCCCCCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhCCCCCcCCCCH
Confidence            999998877 8899999986 789999999999999999999999       9999999999999999999999889999


Q ss_pred             HHHHHHHhcCcchh
Q 029908          160 SEALALLKRSTIID  173 (185)
Q Consensus       160 ~~i~~~~~~~~~~~  173 (185)
                      +++++++++...++
T Consensus       311 ~ev~~~l~~~~~~~  324 (334)
T 2pkf_A          311 EAAASRLAGAYGEH  324 (334)
T ss_dssp             HHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHhHh
Confidence            99999998876554

>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1

Probab=99.95  E-value=2.6e-27  Score=191.11  Aligned_cols=149  Identities=23%  Similarity=0.272  Sum_probs=130.3

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhc-cccEEEcCHHHHhHhhCCCCCCHHH----HHHhcCCCCcEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWD-KAEVIKVSDVELEFLTGSDKIDDES----ALSLWHPNLKLLLV   76 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~-~~dii~~n~~E~~~l~~~~~~~~~~----~~~l~~~g~~~vvi   76 (185)
                      +.++++|+++++||+.            +.+.++++ ++|++++|.+|+..|++....+.++    ++++.+.|++.|++
T Consensus       149 ~~a~~~g~~v~~D~~~------------~~~~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvv  216 (306)
T 2abq_A          149 QIAKERGAFVAVDTSG------------EALHEVLAAKPSFIKPNHHELSELVSKPIASIEDAIPHVQRLIGEGIESILV  216 (306)
T ss_dssp             HHHHTTTCEEEEECCH------------HHHHHHGGGCCSEECCBHHHHHHHHTSCCCSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHhcCCEEEEECCh------------HHHHHHHhcCCcEEecCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            5678899999999972            24567888 9999999999999999876544332    23666789999999


Q ss_pred             EcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCC
Q 029908           77 TLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPAL  156 (185)
Q Consensus        77 t~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~  156 (185)
                      |+|++|++++++++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.    ++
T Consensus       217 t~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~a~~~~~l~~g~~-------~~~a~~~A~a~aa~~v~~~----~~  285 (306)
T 2abq_A          217 SFAGDGALFASAEGMFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKS-------LEDAVPFAVAAGSATAFSD----GF  285 (306)
T ss_dssp             ECGGGCEEEEETTEEEEECCCCCCCCCCSSHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHHSS----SC
T ss_pred             ecCCCceEEEeCCCEEEEeCCCccccCCccHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCc----CC
Confidence            999999999988888899999999999999999999999999999999       9999999999999999998    46


Q ss_pred             CCHHHHHHHHhcCcchh
Q 029908          157 PTESEALALLKRSTIID  173 (185)
Q Consensus       157 ~~~~~i~~~~~~~~~~~  173 (185)
                      |++++++++++++.++.
T Consensus       286 p~~~ev~~~~~~~~~~~  302 (306)
T 2abq_A          286 CTREEVERLQQQLQRTI  302 (306)
T ss_dssp             CCHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHhhEEEEe
Confidence            89999999998877644

>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}

Probab=99.95  E-value=2.7e-27  Score=190.81  Aligned_cols=149  Identities=24%  Similarity=0.293  Sum_probs=129.7

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhc-cccEEEcCHHHHhHhhCCCCCCHHH----HHHhcCCCCcEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWD-KAEVIKVSDVELEFLTGSDKIDDES----ALSLWHPNLKLLLV   76 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~-~~dii~~n~~E~~~l~~~~~~~~~~----~~~l~~~g~~~vvi   76 (185)
                      +.++++|+++++||+.            ..+.++++ ++|++++|++|++.|++....+.++    ++++.+.|++.|++
T Consensus       149 ~~a~~~g~~v~~D~~~------------~~~~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvv  216 (306)
T 2jg5_A          149 QITAQTGAKLVVDAEK------------ELAESVLPYHPLFIKPNKDELEVMFNTTVNSDADVIKYGRLLVDKGAQSVIV  216 (306)
T ss_dssp             HHHHHHCCEEEEECCH------------HHHHHHGGGCCSEECCBHHHHHHHTTSCCCSHHHHHHHHHHHHHTTCSCEEE
T ss_pred             HHHHHCCCEEEEECCh------------HHHHHHHhcCCeEEecCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            5678889999999972            23556777 6999999999999999876544332    23566789999999


Q ss_pred             EcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCC
Q 029908           77 TLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPAL  156 (185)
Q Consensus        77 t~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~  156 (185)
                      |+|++|++++++++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|    +
T Consensus       217 t~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaf~a~~~~~l~~g~~-------~~~a~~~A~a~aa~~v~~~G----~  285 (306)
T 2jg5_A          217 SLGGDGAIYIDKEISIKAVNPQGKVVNTVGSGDSTVAGMVAGIASGLS-------IEKAFQQAVACGTATAFDED----L  285 (306)
T ss_dssp             ECGGGCEEEECSSEEEEEECCCCCCCCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSS----S
T ss_pred             ccCCCceEEEeCCcEEEEeCCcccccCCcChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcCCC----C
Confidence            999999999988888899999999999999999999999999999999       99999999999999999999    5


Q ss_pred             CCHHHHHHHHhcCcchh
Q 029908          157 PTESEALALLKRSTIID  173 (185)
Q Consensus       157 ~~~~~i~~~~~~~~~~~  173 (185)
                      |++++++++++++.+++
T Consensus       286 ~~~~ev~~~~~~~~~~~  302 (306)
T 2jg5_A          286 ATRDAIEKIKSQVTISV  302 (306)
T ss_dssp             CCHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHhceEEEE
Confidence            89999999999887654

>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*

Probab=99.95  E-value=8.1e-28  Score=193.84  Aligned_cols=140  Identities=24%  Similarity=0.392  Sum_probs=125.4

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.++++|++|++||+.+.          +.+.++++++|++++|++|++.|++              .|++.|++|.|++
T Consensus       151 ~~a~~~g~~v~~D~~~~~----------~~~~~ll~~~dil~~N~~E~~~l~g--------------~g~~~vvvt~G~~  206 (299)
T 3ikh_A          151 QYARSRGMTTVFNPSPVN----------PDFCHLWPLIDIAVVNESEAELLQP--------------YGVKTLVITQGAA  206 (299)
T ss_dssp             HHHHHTTCEEEECCCSCC----------GGGGGCGGGCSEEEEEHHHHHHHCC--------------CSCSEEEEECGGG
T ss_pred             HHHHHcCCEEEEccccch----------hhHHHHHhhCCEEEecHHHHHHHhc--------------CCCCEEEEEECCC
Confidence            567889999999998642          3456789999999999999999987              5888999999999


Q ss_pred             ceEEEEcCceeEecCcccccccCCCcchHHHH-HHHHHHHccCCCCCChHHHHH-HHHHHHHHhHHHhhccCCCCCCCCH
Q 029908           82 GCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVG-ALLCKIVDDQSAIEDEPRLRE-ILKFANACGALSTTKKGAIPALPTE  159 (185)
Q Consensus        82 G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A-~~~~~l~~g~~~~~~~~~~~~-a~~~a~~~aa~~~~~~g~~~~~~~~  159 (185)
                      |++++++++.+++|+++++++|++||||+|+| +|+++|++|.+       +++ |+++|+++|+.++++.|+.+++|++
T Consensus       207 G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~a~~~~~~l~~g~~-------~~~~a~~~a~~~aa~~v~~~G~~~~~p~~  279 (299)
T 3ikh_A          207 GAWLVQEGQRQFCPAVPAEALDTTGAGDTFLAVMLASALLRGVA-------PDALALAHASRAAAITVSRRGTLSAFPGS  279 (299)
T ss_dssp             CEEEECSSCEEEECCCCCCCSCCTTHHHHHHHHHHHHHHHTTSS-------SCHHHHHHHHHHHHHHHHSSSSTTTSCCH
T ss_pred             ceEEEeCCceEEeCCCCCccCCCCCchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhCCCcccccCCCH
Confidence            99999988999999999999999999999999 99999999999       999 9999999999999999999889999


Q ss_pred             HHHHHHHhcCcch
Q 029908          160 SEALALLKRSTII  172 (185)
Q Consensus       160 ~~i~~~~~~~~~~  172 (185)
                      +++++++++...+
T Consensus       280 ~ev~~~l~~~~~~  292 (299)
T 3ikh_A          280 RELAALLTTDGAE  292 (299)
T ss_dssp             HHHHHHHC-----
T ss_pred             HHHHHHHHhcccc
Confidence            9999999877653

>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=1.4e-27  Score=193.80  Aligned_cols=154  Identities=18%  Similarity=0.159  Sum_probs=129.6

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCH-HHHHHhcCCCCcEEEEEcCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD-ESALSLWHPNLKLLLVTLGE   80 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~-~~~~~l~~~g~~~vvit~G~   80 (185)
                      +.++++|++|++||+.        ....+.+.++++++|++++|++|++.|++....+. +.++++.+.|++.|++|.|+
T Consensus       154 ~~a~~~g~~v~~Dp~~--------~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~l~~~g~~~vvvt~G~  225 (317)
T 2nwh_A          154 LIARACEKPLAAIAIS--------PAKAVKLKAALGDIDILFMNEAEARALTGETAENVRDWPNILRKAGLSGGVVTRGA  225 (317)
T ss_dssp             HHHHHTTCCEEEECCS--------HHHHGGGTTTGGGCSEEEEEHHHHHHHHC-----CTTHHHHHHHTTCCCEEEEETT
T ss_pred             HHHHhcCCeEEEeCCC--------HHHHHHHHHHhhhCeEecCCHHHHHHHhCCChhHHHHHHHHHHHcCCCEEEEEECC
Confidence            5678889999999973        12234566789999999999999999998622211 23346667899999999999


Q ss_pred             CceEEEEcCc-eeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCH
Q 029908           81 HGCRYYTKSF-KGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTE  159 (185)
Q Consensus        81 ~G~~~~~~~~-~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~  159 (185)
                      +|++++++++ .+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.+.+|++
T Consensus       226 ~G~~~~~~~~~~~~~~~~~v~~vdt~GAGDaf~a~~~~~l~~g~~-------~~~a~~~A~~~aa~~v~~~G~~~~~~~~  298 (317)
T 2nwh_A          226 SEVVAFNGTEKAILHPPLIREVKDVTGAGDAMASGYLAAIAEGKT-------IREALRQGAAAAAITVQSSFATSQDLSK  298 (317)
T ss_dssp             TEEEEECSSCEEEECCCCSSSCSCCCCSSHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHSSTTCCGGGCCH
T ss_pred             CcEEEEcCCCceEEeCCCCccccCCCChhHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcCCCCCCCCCCH
Confidence            9999987664 6889999999999999999999999999999999       9999999999999999999999878999


Q ss_pred             HHHHHHHhcCc
Q 029908          160 SEALALLKRST  170 (185)
Q Consensus       160 ~~i~~~~~~~~  170 (185)
                      +++++.++..+
T Consensus       299 ~~v~~~~~~~~  309 (317)
T 2nwh_A          299 DSVEAMLGLVP  309 (317)
T ss_dssp             HHHHHHHTTSC
T ss_pred             HHHHhHhhhhc
Confidence            99999887654

>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*

Probab=99.95  E-value=3.8e-27  Score=190.30  Aligned_cols=147  Identities=25%  Similarity=0.327  Sum_probs=128.8

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhcc--ccEEEcCHHHHhHhhCCCCCCHHH----HHHhcCCCC-cEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDK--AEVIKVSDVELEFLTGSDKIDDES----ALSLWHPNL-KLL   74 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~--~dii~~n~~E~~~l~~~~~~~~~~----~~~l~~~g~-~~v   74 (185)
                      +.++++|+++++||+            .+.+.+++++  +|++++|++|++.|++....+.++    ++++.+.|. +.|
T Consensus       154 ~~a~~~~~~v~~D~~------------~~~l~~~l~~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~~v  221 (309)
T 3umo_A          154 SAAQKQGIRCIVDSS------------GEALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRV  221 (309)
T ss_dssp             HHHHHTTCEEEEECC------------HHHHHHHTSSCCBSEECCBHHHHHHHHTSCCCSTTHHHHHHHHHHHTTSBSCE
T ss_pred             HHHHhcCCEEEEECC------------cHHHHHHhccCCCeEEEeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCcEE
Confidence            567889999999996            2346677887  499999999999999876433222    236667786 899


Q ss_pred             EEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCC
Q 029908           75 LVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIP  154 (185)
Q Consensus        75 vit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~  154 (185)
                      ++|.|++|++++++++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+. 
T Consensus       222 vvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGD~f~a~~~~~l~~g~~-------~~~a~~~A~~~aa~~v~~~G~~-  293 (309)
T 3umo_A          222 VVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENAS-------LEEMVRFGVAAGSAATLNQGTR-  293 (309)
T ss_dssp             EEECGGGCEEEECSSCEEEECCCSCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHTTSSTTC-
T ss_pred             EEEcCcccEEEEECCcEEEEeCCCcCCCCCcChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCCCC-
Confidence            99999999999999999999999999999999999999999999999999       9999999999999999999985 


Q ss_pred             CCCCHHHHHHHHhcC
Q 029908          155 ALPTESEALALLKRS  169 (185)
Q Consensus       155 ~~~~~~~i~~~~~~~  169 (185)
                       .|++++++++++++
T Consensus       294 -~~~~~ev~~~l~~~  307 (309)
T 3umo_A          294 -LCSHDDTQKIYAYL  307 (309)
T ss_dssp             -CCCHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHh
Confidence             69999999998764

>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri}

Probab=99.95  E-value=3.8e-27  Score=191.34  Aligned_cols=145  Identities=21%  Similarity=0.307  Sum_probs=129.4

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.++++|++|++||++++.+|.+.+...+.+.++++++|++++|.+|++.|++.... .+.++++.+.|++.||||.|.+
T Consensus       156 ~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~di~~~n~~E~~~l~g~~~~-~~~~~~l~~~g~~~vvvt~G~~  234 (319)
T 3lhx_A          156 RECRAKGGKVIFDNNYRPRLWASKEETQQVYQQMLECTDIAFLTLDDEDALWGQQPV-EDVIARTHNAGVKEVVVKRGAD  234 (319)
T ss_dssp             HHHHHTTCEEEEECCCCGGGSSCHHHHHHHHHHHHTTCSEEEEEHHHHHHHHCCCCH-HHHHHHHHHTTCSEEEEEETTE
T ss_pred             HHHHhcCCEEEEeCcCCcccccCHHHHHHHHHHHHhhCCcccCCHHHHHHHhCCCCH-HHHHHHHHhcCCCEEEEEECCC
Confidence            567889999999999998899887888889999999999999999999999987532 2334467778999999999999


Q ss_pred             ceEEEEcCcee-EecCc---ccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCC
Q 029908           82 GCRYYTKSFKG-AVDAF---RVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIP  154 (185)
Q Consensus        82 G~~~~~~~~~~-~~~~~---~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~  154 (185)
                      |++++++++.+ ++|++   +++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.+
T Consensus       235 G~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~-------~~~a~~~A~~~aa~~v~~~Ga~~  304 (319)
T 3lhx_A          235 SCLVSIAGEALVDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLTGGS-------AENAAKRGHLTASTVIQYRGAII  304 (319)
T ss_dssp             EEEEEETTSCCEEECCCCCCGGGCCCCTTHHHHHHHHHHHHHTTTCC-------HHHHHHHHHHHHHHHTTSSSSSC
T ss_pred             CeEEEECCcceEEcccccCCCCccCCCCCccHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhhhccCCCcC
Confidence            99999987665 88886   568999999999999999999999999       99999999999999999999874

>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*

Probab=99.95  E-value=5.4e-27  Score=190.83  Aligned_cols=151  Identities=18%  Similarity=0.207  Sum_probs=129.9

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhh---ccccEEEcCHHHHhHhhCCCCC-CH-H----HHHHhcCCCCc
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIW---DKAEVIKVSDVELEFLTGSDKI-DD-E----SALSLWHPNLK   72 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l---~~~dii~~n~~E~~~l~~~~~~-~~-~----~~~~l~~~g~~   72 (185)
                      +.++++|+++++||+.        ..    +.+++   +++|++++|++|++.|++.... +. +    .+.++.+.|++
T Consensus       153 ~~a~~~g~~v~~Dp~~--------~~----~~~~l~~~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~~l~~~g~~  220 (323)
T 2f02_A          153 QKAHAQEVKVLLDTSG--------DS----LRQVLQGPWKPYLIKPNLEELEGLLGQDFSENPLAAVQTALTKPMFAGIE  220 (323)
T ss_dssp             HHHHHTTCEEEEECCT--------HH----HHHHHHSSCCCSEECCBHHHHHHHHTCCCCSSCHHHHHHHHTSGGGTTCS
T ss_pred             HHHHHCCCEEEEECCh--------HH----HHHHHhccCCCeEEecCHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCC
Confidence            5678899999999973        22    34445   5999999999999999987632 11 1    22366678999


Q ss_pred             EEEEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCC
Q 029908           73 LLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGA  152 (185)
Q Consensus        73 ~vvit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~  152 (185)
                      .|++|.|++|++++++++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+
T Consensus       221 ~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~a~~~~~l~~g~~-------~~~a~~~A~~~aa~~v~~~G~  293 (323)
T 2f02_A          221 WIVISLGKDGAIAKHHDQFYRVKIPTIQAKNPVGSGDATIAGLAYGLAKDAP-------AAELLKWGMAAGMANAQERMT  293 (323)
T ss_dssp             EEEEECGGGCEEEEETTEEEEEECCCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHHSSSS
T ss_pred             EEEEeecCCceEEEeCCCEEEEcCCCccccCCccHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcCCCc
Confidence            9999999999999988888899999999999999999999999999999999       999999999999999999998


Q ss_pred             CCCCCCHHHHHHHHhcCcchh
Q 029908          153 IPALPTESEALALLKRSTIID  173 (185)
Q Consensus       153 ~~~~~~~~~i~~~~~~~~~~~  173 (185)
                      .  +|++++++++++++.+++
T Consensus       294 ~--~~~~~ev~~~~~~~~v~~  312 (323)
T 2f02_A          294 G--HVDVENVKKHLMNIQVVE  312 (323)
T ss_dssp             S--CCCHHHHHHHHTTCEEEE
T ss_pred             C--CCCHHHHHHHhhcEEEEE
Confidence            4  689999999999887654

>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A*

Probab=99.95  E-value=2.6e-27  Score=191.86  Aligned_cols=151  Identities=36%  Similarity=0.517  Sum_probs=133.0

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCC-ChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWP-SPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGE   80 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~-~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~   80 (185)
                      +.++ .+++|++||+.++.+|. +.+.+.+.+.++++++|++++|++|++.|.+....         ..+.+.|+||+|+
T Consensus       149 ~~a~-~~~~v~~Dp~~~~~~~~~~~~~~~~~~~~~l~~~di~~~N~~E~~~l~~~~~~---------~~~~~~vviT~G~  218 (313)
T 3ewm_A          149 KKIK-GSSLIAFDVNLRLDLWRGQEEEMIKVLEESIKLADIVKASEEEVLYLENQGVE---------VKGSMLTAITLGP  218 (313)
T ss_dssp             HHHB-TTBEEEEECCCCGGGGTTCHHHHHHHHHHHHHHCSEEEEEHHHHHHHHTTTCC---------CCCSSEEEEECGG
T ss_pred             HHhc-cCCEEEEeCCCChHHcCCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhccCcc---------ccCceEEEEEECC
Confidence            3455 47999999999988887 46677888899999999999999999999875432         1356668999999


Q ss_pred             CceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHH--ccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCC
Q 029908           81 HGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV--DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPT  158 (185)
Q Consensus        81 ~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~--~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~  158 (185)
                      +|++++++++.+++|+++++++|++||||+|+|+|+++|+  +|.+       +++|+++|+++|+.++++.|+.. +|+
T Consensus       219 ~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~a~~~~~l~~~~g~~-------l~~a~~~A~~~aa~~v~~~G~~~-~p~  290 (313)
T 3ewm_A          219 KGCRLIKNETVVDVPSYNVNPLDTTGAGDAFMAALLVGILKLKGLD-------LLKLGKFANLVAALSTQKRGAWS-TPR  290 (313)
T ss_dssp             GEEEEEETTEEEEEECCCCCCSCCTTHHHHHHHHHHHHHHHSSSCC-------HHHHHHHHHHHHHHHTTSCSSCC-CCC
T ss_pred             CCeEEEECCeeEEcCCCCcccCCCCCchHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHccCCCCC-CCC
Confidence            9999999999999999999999999999999999999999  9999       99999999999999999999974 899


Q ss_pred             HHHHHHHHhcCc
Q 029908          159 ESEALALLKRST  170 (185)
Q Consensus       159 ~~~i~~~~~~~~  170 (185)
                      +++++++++...
T Consensus       291 ~~ev~~~l~~~~  302 (313)
T 3ewm_A          291 KDELLKYKEARE  302 (313)
T ss_dssp             HHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998887554

>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A*

Probab=99.95  E-value=2.8e-27  Score=191.83  Aligned_cols=140  Identities=27%  Similarity=0.297  Sum_probs=127.2

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.++++|++|++||+++..       ..+.+.++++++|++++|++|++.|++.               ++.|++|.|++
T Consensus       163 ~~a~~~g~~v~~D~~~~~~-------~~~~~~~ll~~~dil~~N~~Ea~~l~g~---------------~~~vvvt~G~~  220 (310)
T 3go6_A          163 RAAQSADAVVMVNASPAGQ-------DRSSLQDLAAIADVVIANEHEANDWPSP---------------PTHFVITLGVR  220 (310)
T ss_dssp             HHHHHTTCEEEEECCSSSC-------CHHHHHHHHHHCSEEEEEHHHHHHSSSC---------------CSEEEEECGGG
T ss_pred             HHHHHcCCEEEEcCCcccc-------chHHHHHHHhhCCEEEeCHHHHHHHhCC---------------CCEEEEEECCC
Confidence            5678899999999986542       2566778899999999999999999864               67899999999


Q ss_pred             ceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHc----cCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCC
Q 029908           82 GCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVD----DQSAIEDEPRLREILKFANACGALSTTKKGAIPALP  157 (185)
Q Consensus        82 G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~----g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~  157 (185)
                      |++++++++.+++|+++++++|++||||+|+|+|+++|++    |.+       +++|+++|+++|+.++++.|+.+++|
T Consensus       221 Ga~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~~~~l~~~~~~g~~-------l~~a~~~A~~~aa~~v~~~G~~~~~p  293 (310)
T 3go6_A          221 GARYVGADGVFEVPAPTVTPVDTAGAGDVFAGVLAANWPRNPGSPAE-------RLRALRRACAAGALATLVSGVGDCAP  293 (310)
T ss_dssp             CEEEEETTEEEEECCCCCCCSCCTTHHHHHHHHHHHHCCSSSCCHHH-------HHHHHHHHHHHHHHHTTSSCSTTCCC
T ss_pred             CEEEEECCceEEeCCCCCCcCcCCCchHHHHHHHHHHHHhcccCCCC-------HHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            9999999999999999999999999999999999999999    888       99999999999999999999998899


Q ss_pred             CHHHHHHHHhcCc
Q 029908          158 TESEALALLKRST  170 (185)
Q Consensus       158 ~~~~i~~~~~~~~  170 (185)
                      +++|+++++++.+
T Consensus       294 ~~~ev~~~l~~~~  306 (310)
T 3go6_A          294 AAAAIDAALRANR  306 (310)
T ss_dssp             CHHHHHHHHHTC-
T ss_pred             CHHHHHHHHHhcc
Confidence            9999999997654

>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=1.9e-27  Score=195.38  Aligned_cols=152  Identities=21%  Similarity=0.269  Sum_probs=132.3

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHH-hhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCC-cEEEEEcC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMS-IWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNL-KLLLVTLG   79 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~-~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~-~~vvit~G   79 (185)
                      +.++++|++|++||...          .+.+.+ +++++|++++|++|++.|++..+. .+.++++.+.|+ +.||||.|
T Consensus       176 ~~a~~~g~~v~~Dp~~~----------~~~~~~~ll~~~dil~~N~~Ea~~l~g~~~~-~~~~~~l~~~g~~~~VvvT~G  244 (343)
T 2rbc_A          176 TVARALGKPAILDGDVA----------PVETLEGLAPAATHIVFSEPAATRLTGLETV-KDMLPVLHARYPQTFIAVTAG  244 (343)
T ss_dssp             HHHHHTTCCEEEEECSC----------CHHHHHHHGGGCSEEEEEHHHHHHHHCCSSH-HHHHHHHHHHSTTSEEEEECG
T ss_pred             HHHHHCCCEEEEECCcc----------ccccHHHHHhcCCEEEeCHHHHHHHcCCCCH-HHHHHHHHHhCCCceEEEEEC
Confidence            56788999999999641          235566 899999999999999999987532 223346667788 99999999


Q ss_pred             CCceEEEEcC--ceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCC
Q 029908           80 EHGCRYYTKS--FKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALP  157 (185)
Q Consensus        80 ~~G~~~~~~~--~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~  157 (185)
                      .+|+++++++  +.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.+.+|
T Consensus       245 ~~G~~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~ag~~~~l~~g~~-------~~~a~~~A~~~aa~~v~~~G~~~~~p  317 (343)
T 2rbc_A          245 PAGCWWTEADDPTVHFQTTMQVEAVDTLAAGDIFHGTFALAMAEGMQ-------SRAAVRLSSVAAALKCTVFGGRIGAP  317 (343)
T ss_dssp             GGCEEEECTTCCCEEEECCCCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSSGGGGCC
T ss_pred             CcceEEEeCCCceeEEecCCCCccccCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhCCCCCccCCC
Confidence            9999999877  78899999999999999999999999999999999       99999999999999999999987789


Q ss_pred             CHHHHHHHHhcCcc
Q 029908          158 TESEALALLKRSTI  171 (185)
Q Consensus       158 ~~~~i~~~~~~~~~  171 (185)
                      +++++++++++..+
T Consensus       318 ~~~ev~~~l~~~~~  331 (343)
T 2rbc_A          318 TREETEEAMRQWLE  331 (343)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhccc
Confidence            99999999987543

>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1

Probab=99.94  E-value=2.8e-27  Score=191.77  Aligned_cols=149  Identities=28%  Similarity=0.403  Sum_probs=129.1

Q ss_pred             HHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCC---CCCH-HHHHHhcCCCCcEEEEEc
Q 029908            3 AAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSD---KIDD-ESALSLWHPNLKLLLVTL   78 (185)
Q Consensus         3 ~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~---~~~~-~~~~~l~~~g~~~vvit~   78 (185)
                      .++++|+++++||+++.          +.+.++++++|++++|++|++.|++..   ..+. +.++++.+.|++.|++|.
T Consensus       158 ~a~~~~~~v~~Dp~~~~----------~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~  227 (311)
T 1vm7_A          158 CAKRFNGIVIFDPAPAQ----------GINEEIFQYLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIVKL  227 (311)
T ss_dssp             HHHHCCSEEEECCCSCT----------TCCGGGGGGCSEECCBHHHHHHHHHHHHSCCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred             HHHHcCCEEEEeCcchh----------hhhHHHHhhCCEEeCCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCEEEEEE
Confidence            36888999999998642          123568899999999999999998742   1222 233467778999999999


Q ss_pred             CCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCC
Q 029908           79 GEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPT  158 (185)
Q Consensus        79 G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~  158 (185)
                      |.+|++++++++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.+.+|+
T Consensus       228 G~~G~~~~~~~~~~~~~~~~v~~vdttGAGDaf~a~~~~~l~~g~~-------~~~a~~~A~~~aa~~v~~~G~~~~~p~  300 (311)
T 1vm7_A          228 GDKGVLLVNKNEKKHFPTFKVKAVDTTAAGDVFNGAFAVALSEGKN-------PEEAVIFGTAAAAISVTRLGAQSSIPA  300 (311)
T ss_dssp             GGGCEEEEETTEEEEECCCCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHTTSSSSGGGCCC
T ss_pred             CCCCeEEEeCCceEEecCCCcccCCCCccHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHhCcCCccccCCC
Confidence            9999999988888899999999999999999999999999999999       999999999999999999999878899


Q ss_pred             HHHHHHHHhc
Q 029908          159 ESEALALLKR  168 (185)
Q Consensus       159 ~~~i~~~~~~  168 (185)
                      ++++++++++
T Consensus       301 ~~ev~~~l~~  310 (311)
T 1vm7_A          301 REEVEAFLKN  310 (311)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1

Probab=99.94  E-value=7.7e-27  Score=190.56  Aligned_cols=147  Identities=27%  Similarity=0.396  Sum_probs=127.1

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHH----HHHhcCCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDES----ALSLWHPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~----~~~l~~~g~~~vvit   77 (185)
                      +.++++|++|++||+++...|.         .++++++|++++|++|++.|++....+.++    ++++.+.|++.|++|
T Consensus       174 ~~a~~~g~~v~~Dp~~~~~~~~---------~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~VvvT  244 (331)
T 2fv7_A          174 TMARRSGVKTLFNPAPAIADLD---------PQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIIT  244 (331)
T ss_dssp             HHHHHTTCEEEECCCSCCTTCC---------THHHHTCSEEEEEHHHHHHHHSSCCCSHHHHHHHHHHHHTTTCSEEEEE
T ss_pred             HHHHHcCCEEEEeCCcccccch---------HHHHhcCCEEEeCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCEEEEE
Confidence            4678899999999997643332         357889999999999999999876443322    236777899999999


Q ss_pred             cCCCceEEEEcC--ceeEecCcccccccCCCcchHHHHHHHHHHHcc--CCCCCChHHHHHHHHHHHHHhHHHhhccCCC
Q 029908           78 LGEHGCRYYTKS--FKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDD--QSAIEDEPRLREILKFANACGALSTTKKGAI  153 (185)
Q Consensus        78 ~G~~G~~~~~~~--~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g--~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~  153 (185)
                      .|.+|+++++++  +.+++|+++++++|++||||+|+|+|+++|++|  .+       +++|+++|+++|+.++++.|+.
T Consensus       245 ~G~~G~~~~~~~~~~~~~~~~~~v~vvdttGAGDaf~a~~~~~l~~g~~~~-------~~~a~~~A~~~aa~~v~~~G~~  317 (331)
T 2fv7_A          245 LGAEGCVVLSQTEPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLAYYPNLS-------LEDMLNRSNFIAAVSVQAAGTQ  317 (331)
T ss_dssp             CGGGCEEEEESSCCSCEEECCCCCCCSCCTTHHHHHHHHHHHHHHHCTTSC-------HHHHHHHHHHHHHHHHTSSSGG
T ss_pred             ECCCceEEEECCCCceeEecCCCCccCCCCCchHHHHHHHHHHHHhCCCCC-------HHHHHHHHHHHHHHHhCCCCCc
Confidence            999999998877  788999999999999999999999999999999  99       9999999999999999999998


Q ss_pred             CCCCCHHHHHH
Q 029908          154 PALPTESEALA  164 (185)
Q Consensus       154 ~~~~~~~~i~~  164 (185)
                      +.+|+++++++
T Consensus       318 ~~~p~~~ev~~  328 (331)
T 2fv7_A          318 SSYPYKKDLPL  328 (331)
T ss_dssp             GGCCCGGGSCG
T ss_pred             cCCCCHHHHhh
Confidence            78899888754

>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.94  E-value=1.5e-26  Score=185.63  Aligned_cols=143  Identities=30%  Similarity=0.464  Sum_probs=121.9

Q ss_pred             HHHH-cCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCC---CCCHHH-HHHhcC-CCCcEEEE
Q 029908            3 AAKE-AGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSD---KIDDES-ALSLWH-PNLKLLLV   76 (185)
Q Consensus         3 ~a~~-~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~---~~~~~~-~~~l~~-~g~~~vvi   76 (185)
                      .+++ +|+++++||+++++.|.     .+.+.++++++|++++|++|++.|++..   ..+.+. ++++.+ .|++.|++
T Consensus       140 ~a~~~~~~~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~~g~~~vvv  214 (296)
T 2qhp_A          140 TMPDIDGQLKIFDINLRQDFYT-----KEVLRESFKRCNILKINDEELVTISRMFGYPGIDLQDKCWILLAKYNLKMLIL  214 (296)
T ss_dssp             HSCCTTSCEEEEECCCCTTCCC-----HHHHHHHHHHCSEEEEEHHHHHHHHHHTTCTTSCHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHhcCCCEEEEECcCCccccC-----HHHHHHHHHHCCEEECCHHHHHHHhcccCCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            3444 58999999999887775     3466778899999999999999998742   223333 335555 49999999


Q ss_pred             EcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCC
Q 029908           77 TLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPAL  156 (185)
Q Consensus        77 t~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~  156 (185)
                      |.|++|++++++++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.+.+
T Consensus       215 t~G~~G~~~~~~~~~~~~~~~~v~~vdttGAGD~f~a~~~~~l~~g~~-------~~~a~~~a~~~aa~~v~~~G~~~~~  287 (296)
T 2qhp_A          215 TCGINGSYVFTPGVVSFQETPKVPVADTVGAGDSFTAAFCASILNGKS-------VPEAHKLAVEVSAYVCTQSGAMPEL  287 (296)
T ss_dssp             ECGGGCEEEEETTEEEEECCCCCCCSCCTTHHHHHHHHHHHHHHHTCC-------HHHHHHHHHHHHHHHHTSSSSSCCC
T ss_pred             eecCCCeEEEECCeEEEeCCCCCccccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcCCCCCCCC
Confidence            999999999998888999999999999999999999999999999999       9999999999999999999998654


Q ss_pred             C
Q 029908          157 P  157 (185)
Q Consensus       157 ~  157 (185)
                      |
T Consensus       288 ~  288 (296)
T 2qhp_A          288 P  288 (296)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*

Probab=99.94  E-value=2.7e-26  Score=185.34  Aligned_cols=147  Identities=25%  Similarity=0.320  Sum_probs=121.3

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHH-hhccc-cEEEcCHHHHhHhhCCCCCCHH----HHHHhcCCC-CcEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMS-IWDKA-EVIKVSDVELEFLTGSDKIDDE----SALSLWHPN-LKLL   74 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~-~l~~~-dii~~n~~E~~~l~~~~~~~~~----~~~~l~~~g-~~~v   74 (185)
                      +.++++|+++++||+.        ..    +.+ +.+++ |++++|++|++.|++....+.+    .++++.+.| ++.|
T Consensus       154 ~~a~~~g~~v~~D~~~--------~~----~~~~l~~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~~v  221 (309)
T 3cqd_A          154 SAAQKQGIRCIVDSSG--------EA----LSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRV  221 (309)
T ss_dssp             HHHHTTTCEEEEECCH--------HH----HHHHTTTCCBSEECCBHHHHHHHHTSCCCSTTHHHHHHHHHHHTTSBSCE
T ss_pred             HHHHHcCCeEEEECCh--------HH----HHHHHHhCCCEEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCCEE
Confidence            4678889999999972        22    233 33788 9999999999999987643222    233666788 9999


Q ss_pred             EEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCC
Q 029908           75 LVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIP  154 (185)
Q Consensus        75 vit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~  154 (185)
                      ++|.|++|++++++++.+++|+++++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+. 
T Consensus       222 vvt~G~~G~~~~~~~~~~~~~~~~v~~vdttGAGDaf~a~~~~~l~~g~~-------~~~a~~~A~~~aa~~~~~~G~~-  293 (309)
T 3cqd_A          222 VVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENAS-------LEEMVRFGVAAGSAATLNQGTR-  293 (309)
T ss_dssp             EEECGGGCEEEECSSCEEEECCCSCCCCCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHTC------
T ss_pred             EEEecCCceEEEECCceEEEeCCccccCCCcCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcCcCCC-
Confidence            99999999999988888899999999999999999999999999999999       9999999999999999999975 


Q ss_pred             CCCCHHHHHHHHhcC
Q 029908          155 ALPTESEALALLKRS  169 (185)
Q Consensus       155 ~~~~~~~i~~~~~~~  169 (185)
                       .|++++++++++++
T Consensus       294 -~~~~~~v~~~~~~~  307 (309)
T 3cqd_A          294 -LCSHDDTQKIYAYL  307 (309)
T ss_dssp             -CCCHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHh
Confidence             58999999998754

>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum}

Probab=99.94  E-value=1.5e-26  Score=187.50  Aligned_cols=156  Identities=22%  Similarity=0.332  Sum_probs=129.8

Q ss_pred             HcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCCceEE
Q 029908            6 EAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRY   85 (185)
Q Consensus         6 ~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~   85 (185)
                      +.+.++++||.   .+|.  +...+.+.++++++|++++|++|++.|++..+. .+.++++.+.|++.|+||.|++|+++
T Consensus       141 ~~~~~v~~Dp~---~~~~--~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~-~~~~~~l~~~g~~~vvvt~G~~G~~~  214 (313)
T 3kd6_A          141 DDPKLVVCDTM---NFWI--EGKPEELKKVLARVDVFIVNDSEARLLSGDPNL-VKTARIIREMGPKTLIIKKGEHGALL  214 (313)
T ss_dssp             SSCSEEEEECC---HHHH--HHCHHHHHHHHTTCSEEEEEHHHHHHHHSCSCH-HHHHHHHHTTSCSEEEEECTTSCEEE
T ss_pred             hhCCEEEEcCh---hhhh--hhhHHHHHHHHhcCCEEEeCHHHHHHHhCCCCH-HHHHHHHHHcCCCEEEEeeCCCcEEE
Confidence            46889999993   2232  334667788999999999999999999986532 23345777889999999999999999


Q ss_pred             EEcCceeEecCccc-ccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCC-CCCHHHHH
Q 029908           86 YTKSFKGAVDAFRV-KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPA-LPTESEAL  163 (185)
Q Consensus        86 ~~~~~~~~~~~~~~-~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~-~~~~~~i~  163 (185)
                      +++++.+++|++++ +++|++||||+|+|+|+++|++|.+  .+.+++++|+++|+++|+.++++.|+.+. .|++++++
T Consensus       215 ~~~~~~~~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~--~~~~~l~~a~~~a~~~aa~~v~~~G~~~~~~~~~~ev~  292 (313)
T 3kd6_A          215 FTDNGIFAAPAFPLESIYDPTGAGDTFAGGFIGHLARCGN--TSEAEMRKAVLYGSAMASFCVEQFGPYRYNDLDLLEVD  292 (313)
T ss_dssp             EETTEEEEECCCTTCCCSCCTTHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHTTSSTTGGGGTCCHHHHH
T ss_pred             EECCceEEeCCCCCCCcCCCCCccHHHHHHHHHHHHcCCC--ccccCHHHHHHHHHHHHHHHHeecCCCCCCCCCHHHHH
Confidence            99999999999998 7999999999999999999999871  11122999999999999999999999753 58999999


Q ss_pred             HHHhcC
Q 029908          164 ALLKRS  169 (185)
Q Consensus       164 ~~~~~~  169 (185)
                      +++++.
T Consensus       293 ~~l~~~  298 (313)
T 3kd6_A          293 DRYQSF  298 (313)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988654

>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A*

Probab=99.94  E-value=2e-26  Score=189.77  Aligned_cols=150  Identities=23%  Similarity=0.299  Sum_probs=127.3

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhc--cccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWD--KAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLG   79 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G   79 (185)
                      +.++++|+++++||+...    ..+...+.+.++++  ++|++++|++|++.|++..+  .+.+.+.+..+++.|+||.|
T Consensus       196 ~~a~~~g~~v~~D~~~~~----~~~~~~~~l~~ll~~~~~dil~~N~~Ea~~l~g~~~--~~~a~~~l~~~~~~vvvT~G  269 (352)
T 4e3a_A          196 RIAHQHGREMSMTLSDSF----CVDRYRGEFLDLMRSGKVDIVFANRQEALSLYQTDD--FEEALNRIAADCKIAAVTMS  269 (352)
T ss_dssp             HHHHHTTCEEEEECCCHH----HHHHHHHHHHHHHHTTSCCEEEEEHHHHHHHTTCSC--HHHHHHHHHHHSSEEEEECG
T ss_pred             HHHHHcCCEEEEECCchh----hHHHHHHHHHHHhcccCCcEEEeCHHHHHHHhCCCC--HHHHHHHHhcCCCEEEEEEC
Confidence            568899999999997310    02345677888999  99999999999999998753  23333223347899999999


Q ss_pred             CCceEEEEcCceeEecCcccc-cccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCC
Q 029908           80 EHGCRYYTKSFKGAVDAFRVK-TVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPT  158 (185)
Q Consensus        80 ~~G~~~~~~~~~~~~~~~~~~-~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~  158 (185)
                      .+|++++++++.+++|+++++ ++|++||||+|+|||+++|++|.+       +++|+++|+++|+.+|++.|+.+.+|.
T Consensus       270 ~~G~~~~~~~~~~~~~~~~v~~vvDttGAGDaF~agfl~~l~~g~~-------l~~a~~~A~~aAa~~v~~~G~~~~~~~  342 (352)
T 4e3a_A          270 ENGAVILKGRERYYVNAIRIREVVDTTGAGDLFASGFLYGYTQGRS-------LEDCGKLGCLAAGIVIQQIGPRPMTSL  342 (352)
T ss_dssp             GGCEEEEETTEEEEECCCCCSCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHTTSSSSSCSSCH
T ss_pred             CCceEEEECCEEEEECCccCCCCcCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcCCCCCCCcCH
Confidence            999999999999999999985 899999999999999999999999       999999999999999999999988877


Q ss_pred             HHHHHH
Q 029908          159 ESEALA  164 (185)
Q Consensus       159 ~~~i~~  164 (185)
                      ++.+++
T Consensus       343 ~~~~~~  348 (352)
T 4e3a_A          343 SEAAKQ  348 (352)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776664

>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*

Probab=99.94  E-value=2.3e-26  Score=189.57  Aligned_cols=139  Identities=21%  Similarity=0.303  Sum_probs=121.2

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcC-CCCcEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWH-PNLKLLLV   76 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~-~g~~~vvi   76 (185)
                      +.++++|++|++||+++  .|           ++++++|++++|++|++.|++ ...+.+++    +++.+ .|++.|||
T Consensus       208 ~~a~~~g~~v~~D~~~~--~~-----------~~l~~~dil~pN~~Ea~~l~g-~~~~~~~~~~~a~~l~~~~g~~~Vvv  273 (352)
T 4e84_A          208 EKARAAGKAVLVDPKGD--DW-----------ARYRGASLITPNRAELREVVG-QWKSEDDLRARVANLRAELDIDALLL  273 (352)
T ss_dssp             HHHHHTTCEEEEECCSS--CC-----------STTTTCSEECCBHHHHHHHHC-CCSSHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHhcCCEEEEECCCc--ch-----------hhccCCcEEcCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            57889999999999863  22           367899999999999999998 33333332    25553 69999999


Q ss_pred             EcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCC
Q 029908           77 TLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPAL  156 (185)
Q Consensus        77 t~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~  156 (185)
                      |+|++|++++++++.+++|+++++++|++||||+|+|||+++|++|.+       +++|+++|+++|+.++++.|+.+  
T Consensus       274 T~G~~Ga~~~~~~~~~~~pa~~v~vvDttGAGDaF~ag~l~~l~~g~~-------l~~al~~A~aaaa~~v~~~Ga~~--  344 (352)
T 4e84_A          274 TRSEEGMTLFSAGGELHAPALAREVFDVSGAGDTVIATVATMLGAGVP-------LVDAVVLANRAAGIVVGKLGTAT--  344 (352)
T ss_dssp             ECGGGCEEEEETTEEEEECCCCSCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSSSCC--
T ss_pred             EcCCCcEEEEECCceEEecCCCcCccCCccccHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCCCcc--
Confidence            999999999999999999999999999999999999999999999999       99999999999999999999875  


Q ss_pred             CCHHHHH
Q 029908          157 PTESEAL  163 (185)
Q Consensus       157 ~~~~~i~  163 (185)
                      ++++||+
T Consensus       345 ~t~~el~  351 (352)
T 4e84_A          345 VDYDELF  351 (352)
T ss_dssp             CCHHHHT
T ss_pred             CCHHHhc
Confidence            6888875

>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1

Probab=99.94  E-value=1.2e-26  Score=189.42  Aligned_cols=149  Identities=18%  Similarity=0.182  Sum_probs=127.3

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhc---cccEEEcCHHH-HhHhhCCCCCCHHH----HHHhcCCCCcE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWD---KAEVIKVSDVE-LEFLTGSDKIDDES----ALSLWHPNLKL   73 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~---~~dii~~n~~E-~~~l~~~~~~~~~~----~~~l~~~g~~~   73 (185)
                      +.++++|+++++||+.        .    .+.++++   ++|++++|++| ++.|++....+.++    +.++.+. ++.
T Consensus       170 ~~a~~~g~~v~~D~~~--------~----~~~~~l~~~~~~dil~~N~~E~~~~l~g~~~~~~~~~~~~~~~l~~~-~~~  236 (331)
T 2ajr_A          170 RLARERGVFVFVEQTP--------R----LLERIYEGPEFPNVVKPDLRGNHASFLGVDLKTFDDYVKLAEKLAEK-SQV  236 (331)
T ss_dssp             HHHHHTTCEEEEECCH--------H----HHHHHHHSSCCCSEECCCCTTCCSCBTTBCCCSHHHHHHHHHHHHHH-SSE
T ss_pred             HHHHHcCCEEEEECCh--------H----HHHHHHhcCCCCeEEEeCccchHHHHhCCCCCCHHHHHHHHHHHHHh-cCE
Confidence            5678899999999972        2    2444555   49999999999 99998876543332    2355556 899


Q ss_pred             EEEEcCCCceEEEEcCceeEec-CcccccccCCCcchHHHHHHHHHHH-ccCCCCCChHHHHHHHHHHHHHhHHHhhccC
Q 029908           74 LLVTLGEHGCRYYTKSFKGAVD-AFRVKTVDTTGAGDAFVGALLCKIV-DDQSAIEDEPRLREILKFANACGALSTTKKG  151 (185)
Q Consensus        74 vvit~G~~G~~~~~~~~~~~~~-~~~~~~~d~~GaGDaf~A~~~~~l~-~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g  151 (185)
                      |++|+|++|++++++++.+++| +++++++|++||||+|+|+|+++|+ +|.+       +++|+++|+++|+.++++.|
T Consensus       237 vvvT~G~~Ga~~~~~~~~~~~~~~~~v~vvDttGAGDaF~ag~l~~l~~~g~~-------~~~al~~A~a~aa~~v~~~G  309 (331)
T 2ajr_A          237 SVVSYEVKNDIVATREGVWLIRSKEEIDTSHLLGAGDAYVAGMVYYFIKHGAN-------FLEMAKFGFASALAATRRKE  309 (331)
T ss_dssp             EEEEETTTEEEEECSSCEEEEEESSCCCGGGCTTHHHHHHHHHHHHHHHHCSC-------HHHHHHHHHHHHHHHTTSSS
T ss_pred             EEEeecCCceEEEeCCcEEEEecCCcccccCCCchHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcCcC
Confidence            9999999999999888888999 9889999999999999999999999 9999       99999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHhcCcch
Q 029908          152 AIPALPTESEALALLKRSTII  172 (185)
Q Consensus       152 ~~~~~~~~~~i~~~~~~~~~~  172 (185)
                      +.  +|++++++++++++.++
T Consensus       310 ~~--~~~~~ev~~~~~~~~~~  328 (331)
T 2ajr_A          310 KY--MPDLEAIKKEYDHFTVE  328 (331)
T ss_dssp             CC--CCCHHHHHTTGGGEEEE
T ss_pred             cC--CCCHHHHHHHHhhcEEE
Confidence            74  69999999999887764

>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A*

Probab=99.93  E-value=1.4e-25  Score=185.84  Aligned_cols=149  Identities=17%  Similarity=0.218  Sum_probs=123.8

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCC---CHHH-HHHhcCC-------C
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI---DDES-ALSLWHP-------N   70 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~---~~~~-~~~l~~~-------g   70 (185)
                      +.++++|+++++||..  +.|  .+...+.+.++++++|++++|++|++.|++....   +.+. ++++.+.       +
T Consensus       201 ~~a~~~g~~v~ld~~~--~~~--~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~g  276 (370)
T 3vas_A          201 KHSLENEKLFCFNLSA--PFL--SQFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLEDTVHATARYIADLPFADGKKR  276 (370)
T ss_dssp             HHHHHTTCEEEEECCC--HHH--HHHCHHHHHHHHTTCSEEEEEHHHHHHHHHHTTCCSSHHHHHHHHHHHSCCTTCCCC
T ss_pred             HHHHHcCCEEEEECCc--HHH--HHHHHHHHHHHHhhCCEEEcCHHHHHHHhcccCCCccCHHHHHHHHHhhcccccccC
Confidence            5688899999999963  111  1234577889999999999999999999876432   2222 2345443       8


Q ss_pred             CcEEEEEcCCCceEEEE--cCceeEecCccc---ccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHH
Q 029908           71 LKLLLVTLGEHGCRYYT--KSFKGAVDAFRV---KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGAL  145 (185)
Q Consensus        71 ~~~vvit~G~~G~~~~~--~~~~~~~~~~~~---~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~  145 (185)
                      ++.||||+|++|+++++  +++.+++|++++   +++|++||||+|+|||+++|++|.+       +++|+++|+++|+.
T Consensus       277 ~~~VvvT~G~~Ga~~~~~~~~~~~~~~~~~v~~~~vvDttGAGDaF~ag~l~~l~~g~~-------l~~a~~~A~aaAa~  349 (370)
T 3vas_A          277 KRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIRGKP-------MITSLHAAVKAAAY  349 (370)
T ss_dssp             CCEEEEEETTEEEEEEETTCSSCEEECCCCCCTTTCSCCTTHHHHHHHHHHHHHTTTCC-------HHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCceEEEEcCCCeEEEEecccccCCCcCCCCChHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHH
Confidence            99999999999999999  788899999987   8999999999999999999999999       99999999999999


Q ss_pred             HhhccCCCCCCCCHHHHH
Q 029908          146 STTKKGAIPALPTESEAL  163 (185)
Q Consensus       146 ~~~~~g~~~~~~~~~~i~  163 (185)
                      +|++.|+.  +|+++++.
T Consensus       350 ~v~~~G~~--~p~~~~~~  365 (370)
T 3vas_A          350 IICRSGFS--LGSRDSYS  365 (370)
T ss_dssp             HHTSSSSC--CCCGGGGC
T ss_pred             HHcccCCc--CCCCccce
Confidence            99999985  57777664

>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A*

Probab=99.92  E-value=1.9e-25  Score=185.23  Aligned_cols=153  Identities=15%  Similarity=0.173  Sum_probs=117.2

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCC---HHHH-HHh-------cCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKID---DESA-LSL-------WHPN   70 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~---~~~~-~~l-------~~~g   70 (185)
                      +.++++|+++++|++....    .+..++.+.++++++|++++|++|+..|++.....   .+.+ +.+       ...+
T Consensus       203 ~~a~~~g~~v~ldls~~~~----~~~~~~~l~~ll~~~Dil~~Ne~Ea~~l~~~~~~~~~~~~~~a~~l~~~~~~~~~~~  278 (372)
T 3uq6_A          203 KHSLENEKLFCFNLSAPFL----SQFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLEDTVHATARYIADLPFADGKKR  278 (372)
T ss_dssp             HHHHHTTCEEEEECCCHHH----HHHCHHHHHHHHTTCSEEEEEHHHHHHHHHHTTCCSSHHHHHHHHHHHSCCTTCCCC
T ss_pred             HHHHHcCCeEeeccccchh----hhhhHHHHHHHhhcCCcccCCHHHHHHHhCCCCCchhHHHHHHHHHhhhhhhhhcCC
Confidence            5688999999999974210    23446778889999999999999999998654322   2222 111       1357


Q ss_pred             CcEEEEEcCCCceEEEEcCc--eeEecCcc---cccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHH
Q 029908           71 LKLLLVTLGEHGCRYYTKSF--KGAVDAFR---VKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGAL  145 (185)
Q Consensus        71 ~~~vvit~G~~G~~~~~~~~--~~~~~~~~---~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~  145 (185)
                      ++.||+|+|++|+++++++.  ...+|.++   .+++|||||||+|+|||+++|++|++       +++|+++|+.+|+.
T Consensus       279 ~~~vvvT~G~~G~~~~~~~~~~~~~~~v~~~~~~~vVDTtGAGDaF~agfl~~l~~g~~-------l~~a~~~a~~aAa~  351 (372)
T 3uq6_A          279 KRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIRGKP-------MITSLHAAVKAAAY  351 (372)
T ss_dssp             CCEEEEEETTEEEEEEESSCSSCEEECCCCCCGGGCCCCTTHHHHHHHHHHHHHTTTCC-------HHHHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCceEEecCCCceeeeeeccCCCCCceeCCCchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHH
Confidence            88999999999999998663  23344333   37899999999999999999999999       99999999999999


Q ss_pred             HhhccCCCCCCCCHHHHHHHHh
Q 029908          146 STTKKGAIPALPTESEALALLK  167 (185)
Q Consensus       146 ~~~~~g~~~~~~~~~~i~~~~~  167 (185)
                      +|++.|+.  +|++++++-.++
T Consensus       352 vv~~~Ga~--lp~r~~~~lkln  371 (372)
T 3uq6_A          352 IICRSGFS--LGSRDSYSLKIN  371 (372)
T ss_dssp             HHTSSSSC--CCCGGGCC----
T ss_pred             HHcCCCCC--CCChhHHHHHhc
Confidence            99999974  678877765544

>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*

Probab=99.92  E-value=1.8e-24  Score=177.40  Aligned_cols=145  Identities=17%  Similarity=0.171  Sum_probs=117.7

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCC---CCCHHHH-HHhc------CCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSD---KIDDESA-LSLW------HPNL   71 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~---~~~~~~~-~~l~------~~g~   71 (185)
                      +.++++|+++++||...  .|  .+...+.+.++++++|++++|++|++.|++..   ..+.+.+ +++.      ..++
T Consensus       185 ~~a~~~g~~v~~d~~~~--~~--~~~~~~~l~~~l~~~dil~~N~~Ea~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  260 (347)
T 3otx_A          185 RKAREVDGLFMINLSAP--FI--MQFFSAQLGEVLPYTDIIVANRHEAKEFANMMKWDTDCVEEIARRAVSEVPYTGTKG  260 (347)
T ss_dssp             HHHHHTTCEEEEECCCH--HH--HHHCHHHHHHHGGGCSEEEEEHHHHHHHHHHHTCCCCCHHHHHHHHHHTSCCCCSSC
T ss_pred             HHHHHhCCEEEeeCchh--hh--HHHHHHHHHHHHhhCCEEecCHHHHHHHhcccCCCcCCHHHHHHHHHhhhccccCCC
Confidence            57888999999999631  11  12346778899999999999999999998642   2233333 3444      4799


Q ss_pred             cEEEEEcCCCceEEEEcCceeEecCccc---ccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhh
Q 029908           72 KLLLVTLGEHGCRYYTKSFKGAVDAFRV---KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTT  148 (185)
Q Consensus        72 ~~vvit~G~~G~~~~~~~~~~~~~~~~~---~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~  148 (185)
                      +.|+||+|++|++++++++.+++|++++   +++|++||||+|+|||+++|++|++       +++|+++|+++|+.+|+
T Consensus       261 ~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~-------l~~a~~~a~~~aa~~v~  333 (347)
T 3otx_A          261 RVVVFTRDIESTVLATKDGVETVPVPQLDQDKVIDMNGAGDAFMGGFLSAYAVGKD-------LRRCCETGHYTAQEVIQ  333 (347)
T ss_dssp             CEEEEEETTEEEEEEETTEEEEECCCCCCGGGCCSSCCSHHHHHHHHHHHHTTTCC-------HHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEeCCCCeEEEECCeEEEEEecccCCCCCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHc
Confidence            9999999999999999988889998877   7899999999999999999999999       99999999999999999


Q ss_pred             ccCCCCCCCCH
Q 029908          149 KKGAIPALPTE  159 (185)
Q Consensus       149 ~~g~~~~~~~~  159 (185)
                      +.|+.  +|++
T Consensus       334 ~~G~~--~p~~  342 (347)
T 3otx_A          334 RDGCS--FPEK  342 (347)
T ss_dssp             CC------CCS
T ss_pred             ccCCC--CCCC
Confidence            99964  4543

>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=6.7e-25  Score=181.40  Aligned_cols=141  Identities=18%  Similarity=0.248  Sum_probs=115.1

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCC---CCCHHHH-HHhcC------CCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSD---KIDDESA-LSLWH------PNL   71 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~---~~~~~~~-~~l~~------~g~   71 (185)
                      +.++++|+++++||...  .|  .+..++.+.++++++|++++|++|++.|++..   ..+.+.+ +++.+      .++
T Consensus       199 ~~a~~~g~~v~~d~~~~--~~--~~~~~~~l~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~g~  274 (365)
T 3loo_A          199 KEAAATGRMFMMNLSAP--FV--PQFYKNNLEEIFPYVDVLFGNETEAIALAKEFNYGTEDLREIGKRIAALPKENGKRK  274 (365)
T ss_dssp             HHHHHTTCEEEEECCST--HH--HHHCHHHHHHHGGGCSEEEEEHHHHHHHHHHTTCCCCCHHHHHHHHHTSCCSSTTSC
T ss_pred             HHHHHcCCEEEEECCch--hh--hHHHHHHHHHHHHhCCEEecCHHHHHHHhcccCCCCCCHHHHHHHHHhhhhhccCCC
Confidence            56788999999998631  11  23446778899999999999999999998753   2233333 35544      389


Q ss_pred             cEEEEEcCCCceEEE--EcCceeEecCccc---ccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHH
Q 029908           72 KLLLVTLGEHGCRYY--TKSFKGAVDAFRV---KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALS  146 (185)
Q Consensus        72 ~~vvit~G~~G~~~~--~~~~~~~~~~~~~---~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~  146 (185)
                      +.||||+|++|++++  ++++.+++|++++   +++|++||||+|+|||+++|++|++       +++|+++|+++|+.+
T Consensus       275 ~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~v~~~~vvDttGAGDaF~agfl~~l~~g~~-------l~~a~~~a~~~Aa~~  347 (365)
T 3loo_A          275 RIVIITQGSDPVLLIEAGTDNVREFPVQKLAPEQMVDTNGAGDAFVGGFLAQLLQSRT-------VDVCIKCGIWAAREI  347 (365)
T ss_dssp             CEEEEEETTEEEEEEETTCSCCEEECCCCCC------CTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCEEEEEecCCeEEEEeccccCCCCccCCCChHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHH
Confidence            999999999999999  7778889999987   8999999999999999999999999       999999999999999


Q ss_pred             hhccCCC
Q 029908          147 TTKKGAI  153 (185)
Q Consensus       147 ~~~~g~~  153 (185)
                      +++.|+.
T Consensus       348 v~~~G~~  354 (365)
T 3loo_A          348 IQRSGCT  354 (365)
T ss_dssp             HHHGGGG
T ss_pred             HcCCCCC
Confidence            9999986

>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1

Probab=99.92  E-value=2.7e-25  Score=178.98  Aligned_cols=150  Identities=20%  Similarity=0.145  Sum_probs=119.6

Q ss_pred             hHHHHcCCeEEEcCCC-CCCCCCCh--HHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEc
Q 029908            2 KAAKEAGALLSYDPNL-RLPLWPSP--EEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTL   78 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~-~~~~~~~~--~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~   78 (185)
                      +.++++|++|++||+. ....|...  ....+.+.++++++|++++|++|++.|++.... .+.++++.+.|++.||||.
T Consensus       139 ~~~~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~-~~~~~~l~~~g~~~vvvT~  217 (298)
T 1vk4_A          139 PVLRRKVMFLSADAQGFVRVPENEKLVYRDWEMKEKYLKYLDLFKVDSREAETLTGTNDL-RESCRIIRSFGAKIILATH  217 (298)
T ss_dssp             HHHHHHCSEEEEETHHHHEEEETTEEEECCCTTHHHHGGGCSEEEEEHHHHHHHHSCSCH-HHHHHHHHHTTCSSEEEEE
T ss_pred             HHHHHcCCEEEEecCccccccccccccccchHHHHhhcccCCEEecCHHHHHHHhCCCCH-HHHHHHHHhcCCCEEEEEc
Confidence            5678889999999972 11111000  000123567899999999999999999987532 2233466678999999999


Q ss_pred             CCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHc-cCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCC
Q 029908           79 GEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVD-DQSAIEDEPRLREILKFANACGALSTTKKGAIPALP  157 (185)
Q Consensus        79 G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~-g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~  157 (185)
                       ++|++++++ +.+++|+++++++|++||||+|+|+|+++|++ |.+       +++|+++|+++|+.++++.|+.+. |
T Consensus       218 -~~G~~~~~~-~~~~~~~~~v~vvDttGAGDaF~a~~~~~l~~~g~~-------~~~a~~~A~a~aa~~v~~~G~~~~-~  287 (298)
T 1vk4_A          218 -ASGVIVFDG-NFYEASFRSWSLEGRTGRGDTCTAAFLVGFVFKKMS-------IEKATKFAAAVTSVKMRHPGPLRR-E  287 (298)
T ss_dssp             -TTEEEEESS-SEEEEECCCSSGGGGTTHHHHHHHHHHHHHHTSCCC-------HHHHHHHHHHHHHHHTTSSSSCCG-G
T ss_pred             -CCCcEEEeC-CEEEeccCCcccCCCcCccHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHccCCCCCC-C
Confidence             999999887 78899999999999999999999999999999 999       999999999999999999998754 5


Q ss_pred             CHHHH
Q 029908          158 TESEA  162 (185)
Q Consensus       158 ~~~~i  162 (185)
                      +++++
T Consensus       288 ~~~el  292 (298)
T 1vk4_A          288 DLEAI  292 (298)
T ss_dssp             GGGGC
T ss_pred             CHHHH
Confidence            55544

>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}

Probab=99.92  E-value=1.6e-25  Score=181.19  Aligned_cols=139  Identities=15%  Similarity=0.234  Sum_probs=118.4

Q ss_pred             eEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCCceEEEEcC
Q 029908           10 LLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKS   89 (185)
Q Consensus        10 ~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~   89 (185)
                      +|++||+.+...|     ..+.+.++++++|++++|++|++.|++....+..   ++      .|++|+|++|+++++++
T Consensus       162 ~v~~D~~~~~~~~-----~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~---~l------~vvvT~G~~Ga~~~~~~  227 (306)
T 3bf5_A          162 KIIFDPSQEIHKY-----SKDELKKFHEISYMSIFNDHEYRVFREMTGLSSP---KV------TTIVTNGERGSSLFMDG  227 (306)
T ss_dssp             EEEECCGGGGGGS-----CHHHHHHHHHHCSEEEEEHHHHHHHHHHHCCSSC---SS------CEEEEEGGGEEEEEETT
T ss_pred             cEEEcCchhhhhc-----cHHHHHHHHhcCCEEEcCHHHHHHHhCCCCcCcc---cE------EEEEeecccCeEEEeCC
Confidence            8999998532222     1456678889999999999999999865433211   22      19999999999999988


Q ss_pred             ceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhc--cCCCCCCCCHHHHHHHHh
Q 029908           90 FKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTK--KGAIPALPTESEALALLK  167 (185)
Q Consensus        90 ~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~--~g~~~~~~~~~~i~~~~~  167 (185)
                      +.+++|+++++ +|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++  .|+.+.+|++++++++++
T Consensus       228 ~~~~~~~~~v~-vDttGAGDaF~ag~~~~l~~g~~-------~~~a~~~A~~~aa~~v~~~~~G~~~~~p~~~ev~~~~~  299 (306)
T 3bf5_A          228 KKYDFPAIPSS-GDTVGAGDSFRAGLYLALYNRRS-------IEKGMIYGTIIAHHVIDDGIENFSLNMEDLERETENYR  299 (306)
T ss_dssp             EEEEEECCCCC-SCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHHHCSTTCCCCHHHHHHHHHHHH
T ss_pred             cEEEecCCcCC-CCCCCccHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhccCCccccccCCCHHHHHHHHH
Confidence            88899999999 99999999999999999999999       999999999999999999  999877899999999987


Q ss_pred             cCc
Q 029908          168 RST  170 (185)
Q Consensus       168 ~~~  170 (185)
                      +.+
T Consensus       300 ~~~  302 (306)
T 3bf5_A          300 RMF  302 (306)
T ss_dssp             HHC
T ss_pred             hhc
Confidence            654

>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A*

Probab=99.91  E-value=7e-24  Score=173.67  Aligned_cols=141  Identities=21%  Similarity=0.330  Sum_probs=118.1

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCC---CCCHHH-HHHhcC------CCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSD---KIDDES-ALSLWH------PNL   71 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~---~~~~~~-~~~l~~------~g~   71 (185)
                      +.++++|+++++||..  +.|  .+...+.+.++++++|++++|++|++.|++..   ..+.+. ++++.+      .|+
T Consensus       184 ~~a~~~g~~v~~d~~~--~~~--~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~g~  259 (345)
T 1bx4_A          184 HHASENNRIFTLNLSA--PFI--SQFYKESLMKVMPYVDILFGNETEAATFAREQGFETKDIKEIAKKTQALPKMNSKRQ  259 (345)
T ss_dssp             HHHHHTTCEEEEECCS--HHH--HHHTHHHHHHHGGGCSEEEEEHHHHHHHHHHTTCCCCCHHHHHHHHHTSCCSCTTSC
T ss_pred             HHHHHcCCEEEEeCCc--HHH--HHHHHHHHHHHhccCCEEeCCHHHHHHHhcccCCCCCCHHHHHHHHHhcccccccCC
Confidence            5678889999999963  122  12345667889999999999999999997643   223333 335666      599


Q ss_pred             cEEEEEcCCCceEEEEcCceeEecCccc---ccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhh
Q 029908           72 KLLLVTLGEHGCRYYTKSFKGAVDAFRV---KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTT  148 (185)
Q Consensus        72 ~~vvit~G~~G~~~~~~~~~~~~~~~~~---~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~  148 (185)
                      +.|++|+|++|++++++++.+++|++++   +++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.+++
T Consensus       260 ~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~~~vvDttGAGDaf~ag~~~~l~~g~~-------~~~a~~~A~~~aa~~v~  332 (345)
T 1bx4_A          260 RIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGAGDAFVGGFLSQLVSDKP-------LTECIRAGHYAASIIIR  332 (345)
T ss_dssp             CEEEEEETTEEEEEECSSCEEEECCCCCCCTTCCCHHHHHHHHHHHHHHHHTTTCC-------HHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEeCCCCeEEEECCeEEEEeccccCcCccccCCCcchHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHh
Confidence            9999999999999998888889999887   8999999999999999999999999       99999999999999999


Q ss_pred             ccCCC
Q 029908          149 KKGAI  153 (185)
Q Consensus       149 ~~g~~  153 (185)
                      +.|+.
T Consensus       333 ~~G~~  337 (345)
T 1bx4_A          333 RTGCT  337 (345)
T ss_dssp             SSSSC
T ss_pred             ccCCC
Confidence            99986

>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*

Probab=99.91  E-value=1.1e-23  Score=168.31  Aligned_cols=143  Identities=24%  Similarity=0.249  Sum_probs=115.1

Q ss_pred             hHHHH--cCCeEEEcCCCCC---CCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHH----HHHhcCCCCc
Q 029908            2 KAAKE--AGALLSYDPNLRL---PLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDES----ALSLWHPNLK   72 (185)
Q Consensus         2 ~~a~~--~g~~v~~D~~~~~---~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~----~~~l~~~g~~   72 (185)
                      +.+++  +|++|++||+++.   ..|.+.+.......++++++|++++|+.|++.|++....+.++    ++++.+.|++
T Consensus       111 ~~a~~~~~g~~vv~Dp~~~~~~~~~~~~~~~~~~~~~~ll~~~dil~pN~~E~~~L~g~~~~~~~~~~~~a~~l~~~g~~  190 (283)
T 2ddm_A          111 TALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLK  190 (283)
T ss_dssp             HHHHTTCTTCEEEECCCCEETTTEECSCTTHHHHHHHTTGGGCSEECCBHHHHHHHHTSCCSSHHHHHHHHHHHCCSSCC
T ss_pred             HHHHhcCCCCeEEECCcccCCCCCcccCHHHHHHHHHhhhhhceEecCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCC
Confidence            34555  7999999999875   4665333334444578999999999999999999976544332    2367778999


Q ss_pred             EEEEEcCCC-------ceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHH
Q 029908           73 LLLVTLGEH-------GCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGAL  145 (185)
Q Consensus        73 ~vvit~G~~-------G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~  145 (185)
                      .|++|.|..       |++++++++.+++|++++. +|++||||+|+|+|+++|++|.+       +.+|+++|+++++.
T Consensus       191 ~Vvvt~G~~~~~~~~~G~~~~~~~~~~~~~~~~v~-vdt~GAGDaf~a~~~~~l~~g~~-------~~~A~~~A~a~a~~  262 (283)
T 2ddm_A          191 WVVVTSASGNEENQEMQVVVVTADSVNVISHSRVK-TDLKGTGDLFCAQLISGLLKGKA-------LTDAVHRAGLRVLE  262 (283)
T ss_dssp             EEEEEC-------CEEEEEEEETTEEEEEEEECCC-CCCCCHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHH
T ss_pred             EEEEccccCccCCCceeEEEEeCCceEEEeeceeC-CCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHH
Confidence            999999998       8888888888888888886 79999999999999999999999       99999999999999


Q ss_pred             HhhccCC
Q 029908          146 STTKKGA  152 (185)
Q Consensus       146 ~~~~~g~  152 (185)
                      ++++...
T Consensus       263 ~v~~~~~  269 (283)
T 2ddm_A          263 VMRYTQQ  269 (283)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9987643

>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2

Probab=99.90  E-value=4e-23  Score=162.84  Aligned_cols=140  Identities=23%  Similarity=0.210  Sum_probs=112.5

Q ss_pred             hHHHHcC-CeEEEcCCCCCC----CCCChHHHHHHH-HHhhccccEEEcCHHHHhHhhCCCCCCHHH----HHHhcCCCC
Q 029908            2 KAAKEAG-ALLSYDPNLRLP----LWPSPEEAREQI-MSIWDKAEVIKVSDVELEFLTGSDKIDDES----ALSLWHPNL   71 (185)
Q Consensus         2 ~~a~~~g-~~v~~D~~~~~~----~~~~~~~~~~~~-~~~l~~~dii~~n~~E~~~l~~~~~~~~~~----~~~l~~~g~   71 (185)
                      +.+++++ +++++||+++..    +|.  +...+.+ .++++++|+++||+.|++.|++....+.++    ++++.+.|+
T Consensus        90 ~~~~~~~~~~vv~Dp~~~~~~g~~l~~--~~~~~~~~~~ll~~~dil~pN~~E~~~L~g~~~~~~~~~~~~a~~l~~~g~  167 (258)
T 1ub0_A           90 EAVRRFGVRPLVVDPVMVAKSGDPLLA--KEAAAALKERLFPLADLVTPNRLEAEALLGRPIRTLKEAEEAAKALLALGP  167 (258)
T ss_dssp             HHHHHTTCCSEEECCCC---------C--HHHHHHHHHHTGGGCSEECCBHHHHHHHHCSCCCSHHHHHHHHHHHHTTSC
T ss_pred             HHHHhCCCCcEEECCeeecCCCCcccC--hHHHHHHHHhhcccCeEEeCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Confidence            4567788 899999998754    453  2233344 568999999999999999999876544332    236667899


Q ss_pred             cEEEEEcCCC-c----eEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHH
Q 029908           72 KLLLVTLGEH-G----CRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALS  146 (185)
Q Consensus        72 ~~vvit~G~~-G----~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~  146 (185)
                      +.|++|.|.. |    ++++++++.+++|+++++++|++||||+|+|+|+++|++|.+       +.+|+++|+++++.+
T Consensus       168 ~~vvvt~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~dt~GaGD~f~a~~~~~l~~g~~-------~~~a~~~a~~~~~~~  240 (258)
T 1ub0_A          168 KAVLLKGGHLEGEEAVDLLATRGGVLRFSAPRVHTRNTHGTGCTLSAAIAALLAKGRP-------LAEAVAEAKAYLTRA  240 (258)
T ss_dssp             SCEEEEEEECC---EEEEEEETTEEEEEEECCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHH
T ss_pred             CEEEEccCCCCCCceEEEEEeCCeEEEEeccccCCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHH
Confidence            9999999998 8    788888788889988889999999999999999999999999       999999999999998


Q ss_pred             hhcc
Q 029908          147 TTKK  150 (185)
Q Consensus       147 ~~~~  150 (185)
                      +++.
T Consensus       241 ~~~~  244 (258)
T 1ub0_A          241 LKTA  244 (258)
T ss_dssp             HHTC
T ss_pred             HHHh
Confidence            8764

>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*

Probab=99.89  E-value=1e-22  Score=163.40  Aligned_cols=141  Identities=18%  Similarity=0.146  Sum_probs=110.0

Q ss_pred             hHHHHcCCe-EEEcCCCCC----CCCCChHHHHHHHH-HhhccccEEEcCHHHHhHhhCC-CCCCHHH----HHHhcCCC
Q 029908            2 KAAKEAGAL-LSYDPNLRL----PLWPSPEEAREQIM-SIWDKAEVIKVSDVELEFLTGS-DKIDDES----ALSLWHPN   70 (185)
Q Consensus         2 ~~a~~~g~~-v~~D~~~~~----~~~~~~~~~~~~~~-~~l~~~dii~~n~~E~~~l~~~-~~~~~~~----~~~l~~~g   70 (185)
                      +.+++.+.+ |++||+++.    .+|.  +...+.+. ++++++|+++||+.|++.|++. ...+.++    ++++.+.|
T Consensus       114 ~~~~~~~~~~vvlDp~~~~~~g~~l~~--~~~~~~l~~~ll~~~dil~pN~~Ea~~L~g~~~~~~~~~~~~~a~~l~~~g  191 (288)
T 1jxh_A          114 ERLQRHHVRNVVLDTVMLAKSGDPLLS--PSAIETLRVRLLPQVSLITPNLPEAAALLDAPHARTEQEMLAQGRALLAMG  191 (288)
T ss_dssp             HHHHHTTCCSEEEECCCC------CCC--HHHHHHHHHHTGGGCSEEECBHHHHHHHHTCCCCCSHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCCeEEEcCcccCCCCCccCC--HHHHHHHHHHHHhhCcEEcCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Confidence            467788986 999999874    3453  23334455 4899999999999999999987 5444333    23666789


Q ss_pred             CcEEEEEcCCCc-----eEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHH
Q 029908           71 LKLLLVTLGEHG-----CRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGAL  145 (185)
Q Consensus        71 ~~~vvit~G~~G-----~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~  145 (185)
                      ++.|++|.|.+|     ++++++++.+++|+++++++|++||||+|+|+|+++|++|.+       +.+|+++|+++++.
T Consensus       192 ~~~Vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~vdttGAGD~f~a~~~a~l~~g~~-------~~~A~~~A~a~a~~  264 (288)
T 1jxh_A          192 CEAVLMKGGHLEDAQSPDWLFTREGEQRFSAPRVNTKNTHGTGCTLSAALAALRPRHRS-------WGETVNEAKAWLSA  264 (288)
T ss_dssp             CSEEEEBC---------CEEECSSCEEEC---CCCCSCCBTHHHHHHHHHHHHGGGSSS-------HHHHHHHHHHHHHH
T ss_pred             CCEEEEeccCCCCCceeEEEEECCeEEEEeccccCCCCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHH
Confidence            999999999999     888888888889998899999999999999999999999999       99999999999999


Q ss_pred             HhhccC
Q 029908          146 STTKKG  151 (185)
Q Consensus       146 ~~~~~g  151 (185)
                      ++++..
T Consensus       265 ~v~~~~  270 (288)
T 1jxh_A          265 ALAQAD  270 (288)
T ss_dssp             HHTTGG
T ss_pred             HHHhhc
Confidence            997763

>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis}

Probab=99.89  E-value=3.6e-22  Score=158.51  Aligned_cols=143  Identities=18%  Similarity=0.138  Sum_probs=118.0

Q ss_pred             hHHHHcCC-eEEEcCCCCCCCCCC--hHHHHHHHH-HhhccccEEEcCHHHHhHhhCCC-CCCHHH----HHHhcCCCCc
Q 029908            2 KAAKEAGA-LLSYDPNLRLPLWPS--PEEAREQIM-SIWDKAEVIKVSDVELEFLTGSD-KIDDES----ALSLWHPNLK   72 (185)
Q Consensus         2 ~~a~~~g~-~v~~D~~~~~~~~~~--~~~~~~~~~-~~l~~~dii~~n~~E~~~l~~~~-~~~~~~----~~~l~~~g~~   72 (185)
                      +.+++++. ++++||+++...|..  .+...+.+. ++++++|+++||..|++.|++.. ..+.++    ++++.+.|++
T Consensus        94 ~~~~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~l~~~ll~~~diltpN~~E~~~L~g~~~~~~~~~~~~~a~~l~~~g~~  173 (271)
T 2i5b_A           94 KTIKEKQLKNVVIDPVMVCKGANEVLYPEHAQALREQLAPLATVITPNLFEASQLSGMDELKTVDDMIEAAKKIHALGAQ  173 (271)
T ss_dssp             HHHHHTTCSSEEECCCCSSBCSSSBSSHHHHHHHHHHTGGGCSEECCBHHHHHHHHTCCCCCSHHHHHHHHHHHHTTTCS
T ss_pred             HHHHhCCCCCEEEcCCcCCCCCCcCcCHHHHHHHHHHhHhhCcEEcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC
Confidence            45677888 699999988765542  233444554 78999999999999999999876 443332    2367778999


Q ss_pred             EEEEEcCC--Cce----EEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHH
Q 029908           73 LLLVTLGE--HGC----RYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALS  146 (185)
Q Consensus        73 ~vvit~G~--~G~----~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~  146 (185)
                      .|++|.|.  +|+    +++++++.+++++++++++|++|+||+|+|+|+++|++|.+       +.+|+++|+++++.+
T Consensus       174 ~Vvvt~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~dt~GaGD~f~a~~~~~l~~g~~-------~~~A~~~A~~~~~~~  246 (271)
T 2i5b_A          174 YVVITGGGKLKHEKAVDVLYDGETAEVLESEMIDTPYTHGAGCTFSAAVTAELAKGAE-------VKEAIYAAKEFITAA  246 (271)
T ss_dssp             EEEEECGGGSCSSSEEEEEECSSCEEEEEECCCCCSCCBTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCCCceEEEEEeCCeEEEEeccccCCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHH
Confidence            99999998  784    67777778889998889999999999999999999999999       999999999999999


Q ss_pred             hhccC
Q 029908          147 TTKKG  151 (185)
Q Consensus       147 ~~~~g  151 (185)
                      +++..
T Consensus       247 ~~~~~  251 (271)
T 2i5b_A          247 IKESF  251 (271)
T ss_dssp             HHTCC
T ss_pred             HHHhh
Confidence            98753

>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A*

Probab=99.88  E-value=1.3e-22  Score=168.51  Aligned_cols=141  Identities=22%  Similarity=0.309  Sum_probs=113.9

Q ss_pred             hHHHH-cCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCC-C---C--------HHH----HH
Q 029908            2 KAAKE-AGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDK-I---D--------DES----AL   64 (185)
Q Consensus         2 ~~a~~-~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~-~---~--------~~~----~~   64 (185)
                      +.+++ +|+++++||..  ..|  .+...+.+.++++++|++++|++|++.|++... .   +        .++    ++
T Consensus       203 ~~a~~~~g~~v~~d~~~--~~~--~~~~~~~l~~ll~~~dil~pN~~Ea~~L~g~~~~~~~~~~~~s~~~~~~~~~~~a~  278 (383)
T 2abs_A          203 GYAHGIPNAIFTLNLSA--PFC--VELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKTALSTANKEHAVEVCTG  278 (383)
T ss_dssp             HHHHTSTTCEEEEECCC--HHH--HHHCHHHHHHHHHTCSEEEEEHHHHHHHHHHHTCC----------CHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEeCCc--HHH--HHHHHHHHHHHHhhCCEEeCCHHHHHHHhcccCcccccccccccccccccHHHHHH
Confidence            46777 89999999863  122  133456678899999999999999999976431 1   0        111    22


Q ss_pred             HhcC------C-CCcEEEEEcCCCceEEE-----EcCceeEecCccc---ccccCCCcchHHHHHHHHHHHccCCCCCCh
Q 029908           65 SLWH------P-NLKLLLVTLGEHGCRYY-----TKSFKGAVDAFRV---KTVDTTGAGDAFVGALLCKIVDDQSAIEDE  129 (185)
Q Consensus        65 ~l~~------~-g~~~vvit~G~~G~~~~-----~~~~~~~~~~~~~---~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~  129 (185)
                      ++.+      . |++.||||+|.+|++++     .+++.+++|++++   +++|++||||+|+|+|+++|++|.+     
T Consensus       279 ~l~~~~~~~~~~g~~~VvvT~G~~Ga~~~~~~~~~~~~~~~~~~~~v~~~~vvDttGAGDaF~ag~~~~l~~g~~-----  353 (383)
T 2abs_A          279 ALRLLTAGQNTSATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKT-----  353 (383)
T ss_dssp             HHHHHHTTCCCSSCCEEEEECTTSCEEEEEECTTSCEEEEEECCCCCCGGGCCCCTTHHHHHHHHHHHHHHTTCC-----
T ss_pred             HHHhccccccccCCCEEEEEcCCCCeEEEEeecCCCCeEEEecCccCCcCCcCcCCChHHHHHHHHHHHHHcCCC-----
Confidence            4443      3 89999999999999998     5556778888776   8999999999999999999999999     


Q ss_pred             HHHHHHHHHHHHHhHHHhhccCCC
Q 029908          130 PRLREILKFANACGALSTTKKGAI  153 (185)
Q Consensus       130 ~~~~~a~~~a~~~aa~~~~~~g~~  153 (185)
                        +++|+++|+++|+.++++.|+.
T Consensus       354 --l~~al~~A~a~aa~~v~~~Ga~  375 (383)
T 2abs_A          354 --VKQCIMCGNACAQDVIQHVGFS  375 (383)
T ss_dssp             --HHHHHHHHHHHHHHHHTSSSCC
T ss_pred             --HHHHHHHHHHHHHHHHhcCCcc
Confidence              9999999999999999999986

>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*

Probab=99.87  E-value=3.7e-22  Score=161.55  Aligned_cols=139  Identities=17%  Similarity=0.172  Sum_probs=108.6

Q ss_pred             hHHHHcCC--eEEEcCCCCCC------CCCChHHHHHHHHH-hhccccEEEcCHHHHhHhhCCCCCCHHH----HHHhcC
Q 029908            2 KAAKEAGA--LLSYDPNLRLP------LWPSPEEAREQIMS-IWDKAEVIKVSDVELEFLTGSDKIDDES----ALSLWH   68 (185)
Q Consensus         2 ~~a~~~g~--~v~~D~~~~~~------~~~~~~~~~~~~~~-~l~~~dii~~n~~E~~~l~~~~~~~~~~----~~~l~~   68 (185)
                      +.++++|.  ++++||+++..      +|. .+...+.+.+ +++++|+++||++|++.|++....+.++    ++++.+
T Consensus        99 ~~a~~~g~~~~vv~Dp~~~~~~~~sg~~~~-~~~~~~~l~~~ll~~~dil~pN~~Ea~~L~g~~~~~~~~~~~~~~~l~~  177 (312)
T 2yxt_A           99 QELKQQNPRLVYVCDPVLGDKWDGEGSMYV-PEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHS  177 (312)
T ss_dssp             HHHHHHCTTCEEEECCCCEEC--CCCEESS-CTTHHHHHHHTTGGGCSEECCCHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCCeEEECCCcCCCCCCCCCeeC-CHHHHHHHHHHhhhhCCEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            45677775  48999998754      454 2345556664 8999999999999999999876544332    235666


Q ss_pred             CCCcEEEEEcCCCc------eEEE-------Ec-C----ceeEecCcccccccCCCcchHHHHHHHHHHHc-cCCCCCCh
Q 029908           69 PNLKLLLVTLGEHG------CRYY-------TK-S----FKGAVDAFRVKTVDTTGAGDAFVGALLCKIVD-DQSAIEDE  129 (185)
Q Consensus        69 ~g~~~vvit~G~~G------~~~~-------~~-~----~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~-g~~~~~~~  129 (185)
                      .|++.|+||.|..|      ++++       ++ +    +.+++|++++++ |++||||+|+|+|+++|++ |.+     
T Consensus       178 ~g~~~VvvT~G~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v-dttGAGDaf~a~~~~~l~~~g~~-----  251 (312)
T 2yxt_A          178 MGPDTVVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDA-VFVGTGDLFAAMLLAWTHKHPNN-----  251 (312)
T ss_dssp             HSCSEEEECCCSCCCTTCTTEEEEEEEEEC----CCCCEEEEEEEEECCSS-CCSSHHHHHHHHHHHHHHHSTTC-----
T ss_pred             cCCCEEEEecccCCCCCCCceEEEEEeccccccccccccceEEEeecccCC-CCCCchHHHHHHHHHHHHhcCCC-----
Confidence            89999999988764      6665       43 2    567888888887 9999999999999999998 999     


Q ss_pred             HHHHHHHHHHHHHhHHHhhc
Q 029908          130 PRLREILKFANACGALSTTK  149 (185)
Q Consensus       130 ~~~~~a~~~a~~~aa~~~~~  149 (185)
                        +.+|+++|+++++.++++
T Consensus       252 --l~~a~~~A~a~a~~~v~~  269 (312)
T 2yxt_A          252 --LKVACEKTVSTLHHVLQR  269 (312)
T ss_dssp             --HHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHH
Confidence              999999999999887753

>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*

Probab=99.87  E-value=8.6e-22  Score=158.42  Aligned_cols=139  Identities=19%  Similarity=0.185  Sum_probs=112.6

Q ss_pred             HHHcCCeEEEcCCCCCC--CCC-ChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCC---CHHH----HHHhcCCCCcE
Q 029908            4 AKEAGALLSYDPNLRLP--LWP-SPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI---DDES----ALSLWHPNLKL   73 (185)
Q Consensus         4 a~~~g~~v~~D~~~~~~--~~~-~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~---~~~~----~~~l~~~g~~~   73 (185)
                      +++.+++|++||+++..  +|. ..++..+.+.++++++|+++||..|++.|++....   +.++    ++++.+.|++.
T Consensus       102 ~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L~g~~~~~~~~~~~~~~aa~~L~~~g~~~  181 (291)
T 3mbh_A          102 FRQPDSLIVADPVLGDNGRLYTNFDMEMVKEMRHLITKADVITPNLTELFYLLDEPYKADSTDEELKEYLRLLSDKGPQV  181 (291)
T ss_dssp             HCCTTCEEEECCCCEETTEECTTCCHHHHHHHHHHGGGCSEECCBHHHHHHHHTCCCCSCCCHHHHHHHHHHHHHTSCSE
T ss_pred             hcCCCCcEEECceeeeCCCCCCCCCHHHHHHHHHHhccCCEEeCCHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhCCCE
Confidence            33457999999999864  575 24666777889999999999999999999998643   2222    23677789999


Q ss_pred             EEEEcCC-------CceEEEEcC--ceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhH
Q 029908           74 LLVTLGE-------HGCRYYTKS--FKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGA  144 (185)
Q Consensus        74 vvit~G~-------~G~~~~~~~--~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa  144 (185)
                      |++|.|.       .|+++++++  +.++++.+++. +|++|+||+|+|+|+++|++|.+       +.+|+++|++++.
T Consensus       182 Vvvtgg~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~-~dt~GaGD~f~aai~a~l~~g~~-------l~~A~~~A~~~~~  253 (291)
T 3mbh_A          182 VIITSVPVHDEPHKTSVYAYNRQGNRYWKVTCPYLP-AHYPGTGDTFTSVITGSLMQGDS-------LPMALDRATQFIL  253 (291)
T ss_dssp             EEEEEEEETTEEEEEEEEEEETTTTEEEEEEESCCG-GGSTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHH
T ss_pred             EEEEeccccCCCCcEEEEEEeCCCCeEEEEEecccC-CCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHH
Confidence            9999764       467777763  45677877775 89999999999999999999999       9999999999988


Q ss_pred             HHhhcc
Q 029908          145 LSTTKK  150 (185)
Q Consensus       145 ~~~~~~  150 (185)
                      .++++.
T Consensus       254 ~ai~~~  259 (291)
T 3mbh_A          254 QGIRAT  259 (291)
T ss_dssp             HHHHTT
T ss_pred             HHHHHH
Confidence            888653

>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A

Probab=99.86  E-value=1.2e-21  Score=158.64  Aligned_cols=126  Identities=24%  Similarity=0.316  Sum_probs=103.1

Q ss_pred             CCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH-HHhcCCCC--cEEEEEcCCCceE
Q 029908            8 GALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA-LSLWHPNL--KLLLVTLGEHGCR   84 (185)
Q Consensus         8 g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~-~~l~~~g~--~~vvit~G~~G~~   84 (185)
                      ++++++||...          .+.+.++++++|++++|++|++.+ +..  +.+++ ..+.+.+.  +.|++|+|.+|++
T Consensus       179 ~~~v~~d~~~~----------~~~~~~~l~~~dil~~n~~ea~~l-g~~--~~~~~~~~l~~~~~~g~~vvvt~G~~G~~  245 (312)
T 2hlz_A          179 KIRVSVEVEKP----------REELFQLFGYGDVVFVSKDVAKHL-GFQ--SAEEALRGLYGRVRKGAVLVCAWAEEGAD  245 (312)
T ss_dssp             CCEEEEEECSC----------CGGGGGGGGSSSEEEECHHHHHHT-TCC--SHHHHHHHHGGGSCTTCEEEEECGGGCEE
T ss_pred             CeEEEEEcccc----------hHHHHHHHhcCCEEEEcHHHHHHc-CCC--CHHHHHHHHHHhcCCCCEEEEEecccCeE
Confidence            78999998642          234577899999999999999987 432  23332 34443222  8999999999999


Q ss_pred             EEEc-CceeEecCc-ccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCC
Q 029908           85 YYTK-SFKGAVDAF-RVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAI  153 (185)
Q Consensus        85 ~~~~-~~~~~~~~~-~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~  153 (185)
                      +++. +..+++|++ +++++|++||||+|+|+|+++|++|.+       +++|+++|+++|+.++++.|+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~a~~~~~l~~g~~-------~~~a~~~a~~~aa~~v~~~G~~  309 (312)
T 2hlz_A          246 ALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRS-------VQEALRFGCQVAGKKCGLQGFD  309 (312)
T ss_dssp             EECTTCCEEEECCCCCSSCCCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSSSG
T ss_pred             EEccCCCEEECCCCCCCCcccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhhcCcc
Confidence            9875 457788985 468999999999999999999999999       9999999999999999999964

>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*

Probab=99.86  E-value=2.7e-21  Score=154.88  Aligned_cols=135  Identities=20%  Similarity=0.190  Sum_probs=112.2

Q ss_pred             cCCeEEEcCCCCC--CCCC-ChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCC---CH-HHHHHhcC-CCC-cEEEEE
Q 029908            7 AGALLSYDPNLRL--PLWP-SPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI---DD-ESALSLWH-PNL-KLLLVT   77 (185)
Q Consensus         7 ~g~~v~~D~~~~~--~~~~-~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~---~~-~~~~~l~~-~g~-~~vvit   77 (185)
                      .+.+|++||+++.  .+|. ..+...+.+.++++++|+++||..|++.|++....   +. +.++++.+ .|+ +.|++|
T Consensus       100 ~~~~vv~DPv~~~~g~l~~l~~~~~~~~l~~ll~~adiitpN~~Ea~~L~g~~~~~~~~~~~aa~~L~~~~g~~~~Vvvt  179 (282)
T 3h74_A          100 TLSLLVVDPVLGDLGQLYQGFDQDYVAAMRQLIQQADVILPNTTEAALLTGAPYQVTPDLEVILPALQAQLKTGAHAVIT  179 (282)
T ss_dssp             CCSEEEECCCCEETTEECTTCCHHHHHHHHHHGGGCSEECCCHHHHHHHHTCCCCSSCCHHHHHHHHHTTSCTTCEECEE
T ss_pred             CCCcEEEcCeeecCCCCCCCCCHHHHHHHHHHhccCCEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            4789999999985  4565 24666777789999999999999999999988643   22 23347777 899 999999


Q ss_pred             cCC----CceEEEE-cCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhc
Q 029908           78 LGE----HGCRYYT-KSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTK  149 (185)
Q Consensus        78 ~G~----~G~~~~~-~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~  149 (185)
                      .|.    .|+++++ +++.++++.+++. +|++|+||+|+|+|+++|++|.+       +.+|+++|+++++.++++
T Consensus       180 ~G~~~~~~g~~~~~~~~~~~~~~~~~v~-~dt~GaGD~fsaai~a~l~~g~~-------l~~A~~~A~~~~~~ai~~  248 (282)
T 3h74_A          180 DVQRADQIGCAWLDEAGHVQYCGARRLP-GHYNGTGDTLAAVIAGLLGRGYP-------LAPTLARANQWLNMAVAE  248 (282)
T ss_dssp             EEEETTEEEEEEECTTSCEEEEEEECCS-SCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCceEEEEEeCCCeEEEEEecCCC-CCCcCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHH
Confidence            984    6888785 6667788887775 89999999999999999999999       999999999998888765

>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*

Probab=99.85  E-value=9.1e-21  Score=152.19  Aligned_cols=139  Identities=23%  Similarity=0.179  Sum_probs=112.1

Q ss_pred             hHHHHcC--CeEEEcCCCCC----CCCCChHHHHHHHH-HhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCC
Q 029908            2 KAAKEAG--ALLSYDPNLRL----PLWPSPEEAREQIM-SIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPN   70 (185)
Q Consensus         2 ~~a~~~g--~~v~~D~~~~~----~~~~~~~~~~~~~~-~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g   70 (185)
                      +.+++++  +++++||+++.    .+|.  +...+.+. .+++++|+++||..|++.|+|.+..+.+++    +++.+.|
T Consensus       100 ~~~~~~~~~~~vv~DPVm~~~~~~~~~~--~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~~~~~aa~~l~~~g  177 (289)
T 3pzs_A          100 AQVKQANPDAWYFCDPVMGHPEKGCIVA--PGVAEFFCNEALPASDMIAPNLLELEQLSGERVENVEQAVQVARSLCARG  177 (289)
T ss_dssp             HHHHHHCTTCEEEECCCCEETTTEECSC--HHHHHHHHHTHHHHCSEECCCHHHHHHHHTSCCCSHHHHHHHHHHHHTTS
T ss_pred             HHHHhhCCCCeEEEcCccccCCCCcccC--HHHHHHHHHHhhccCCEEeCCHHHHHHHhCCCCCCHHHHHHHHHHHHHHC
Confidence            3455555  89999997654    2343  45555666 489999999999999999999876554433    3677889


Q ss_pred             CcEEEEEcC-CCce-------EEEEcCceeEecCccccc--ccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 029908           71 LKLLLVTLG-EHGC-------RYYTKSFKGAVDAFRVKT--VDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFAN  140 (185)
Q Consensus        71 ~~~vvit~G-~~G~-------~~~~~~~~~~~~~~~~~~--~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~  140 (185)
                      ++.|++|.| ..|+       +++++++.++++.++++.  +|++|+||+|+|+|++++++|.+       +.+|+++|+
T Consensus       178 ~~~Vvvt~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dt~GaGD~f~a~~~~~l~~g~~-------~~~A~~~A~  250 (289)
T 3pzs_A          178 PKVVLVKHLSRAGYHADCFEMLLVTADDAWHICRPLVDFGKRQPVGVGDLTSGLLLVNLLKGEP-------LDKALEHVT  250 (289)
T ss_dssp             CSEEEECCCGGGSSCTTEEEEEEECSSCEEEEEEECCCCTTSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHH
T ss_pred             CCEEEEecccCCCCCCCeEEEEEEeCCeEEEEEeeeecCCCCCCCcHHHHHHHHHHHHHHCCCC-------HHHHHHHHH
Confidence            999999985 4776       777777888888888776  89999999999999999999999       999999999


Q ss_pred             HHhHHHhhc
Q 029908          141 ACGALSTTK  149 (185)
Q Consensus       141 ~~aa~~~~~  149 (185)
                      ++++..+++
T Consensus       251 ~~~~~~i~~  259 (289)
T 3pzs_A          251 AAVYEVMLK  259 (289)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            987777664

>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}

Probab=99.83  E-value=3e-20  Score=150.00  Aligned_cols=132  Identities=15%  Similarity=0.090  Sum_probs=101.7

Q ss_pred             CeEEEcCCCCCC--CCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCcEEEEEcCCCc
Q 029908            9 ALLSYDPNLRLP--LWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLKLLLVTLGEHG   82 (185)
Q Consensus         9 ~~v~~D~~~~~~--~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~~vvit~G~~G   82 (185)
                      .++++||+++..  +|. .+...+.+.++++++|+|+||..|++.|+|.+..+.+++    ++|.+.|++.|+||.|..|
T Consensus       112 ~~vv~DPVm~d~G~~~~-~~~~~~~~~~Ll~~adiitPN~~Ea~~L~g~~~~~~~~~~~aa~~L~~~G~~~Vvvt~g~~g  190 (300)
T 3zs7_A          112 LTFICDPVMGDDGIMYC-KKEVLDAYRELVPLADIVTPNYFEASLLSGVTVNDLSSAILAADWFHNCGVAHVIIKSFREQ  190 (300)
T ss_dssp             CEEEECCCC----------CTHHHHHHHHGGGCSEECCCHHHHHHHHSSCCCSHHHHHHHHHHHHHHTCSEEEEEEEC--
T ss_pred             ceEEEccccccCCCeec-CHHHHHHHHHHhhhCCEecCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCEEEEecCcCC
Confidence            799999988764  665 455667777899999999999999999999876554433    3666789999999999887


Q ss_pred             ----e--EEEE-c------CceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhc
Q 029908           83 ----C--RYYT-K------SFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTK  149 (185)
Q Consensus        83 ----~--~~~~-~------~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~  149 (185)
                          .  .++. .      ++.++++.++++. +++|+||+|+|+|+++| +|.+       +.+|+++|+++....+.+
T Consensus       191 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~-~~~GtGD~fsaal~a~l-~g~~-------~~~Av~~A~~~v~~~i~~  261 (300)
T 3zs7_A          191 ENPTHLRFLYSVKEGSEAAVRRFSGVVPYHEG-RYTGTGDVFAACLLAFS-HSHP-------MDVAIGKSMAVLQELIIA  261 (300)
T ss_dssp             -CCSEEEEEEEECCSTTSCCEEEEEEEECCSS-CBTTHHHHHHHHHHHHH-TTSC-------HHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEeccccccCCCeEEEEEeccCCC-CCcCHHHHHHHHHHHHH-cCCC-------HHHHHHHHHHHHHHHHHH
Confidence                1  3333 4      4567788887776 89999999999999999 9999       999999999997777665


Q ss_pred             c
Q 029908          150 K  150 (185)
Q Consensus       150 ~  150 (185)
                      .
T Consensus       262 t  262 (300)
T 3zs7_A          262 T  262 (300)
T ss_dssp             T
T ss_pred             H
Confidence            3

>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.4e-16  Score=138.07  Aligned_cols=135  Identities=18%  Similarity=0.068  Sum_probs=99.2

Q ss_pred             HHcCCeEEEcCCCCC----CCCCChHHHHHHHH-HhhccccEEEcCHHHHhHhhCCC--CCCHHH----HHHhcCCCC-c
Q 029908            5 KEAGALLSYDPNLRL----PLWPSPEEAREQIM-SIWDKAEVIKVSDVELEFLTGSD--KIDDES----ALSLWHPNL-K   72 (185)
Q Consensus         5 ~~~g~~v~~D~~~~~----~~~~~~~~~~~~~~-~~l~~~dii~~n~~E~~~l~~~~--~~~~~~----~~~l~~~g~-~   72 (185)
                      ++.+.+|++||+.+.    .++.  +...+.+. ++++.+|+|+||..|++.|+|..  ..+.++    ++++.+.|. +
T Consensus       116 ~~~~~~vVlDPvm~a~~g~~l~~--~~~~~~l~~~Ll~~a~iitPN~~Ea~~L~g~~~~i~~~~d~~~aa~~L~~~g~~~  193 (550)
T 3rm5_A          116 GENRPKLVVDPVLVATSGSSLAG--KDIVSLITEKVAPFADILTPNIPECYKLLGEERKVNGLQDIFQIAKDLAKITKCS  193 (550)
T ss_dssp             GGGSCEEEECCCC---------C--TTHHHHHHHHTGGGCSEECCBHHHHHHHHSCCCCCCSSHHHHHHHHHHHHHHCCS
T ss_pred             cccCCCEEEecceecCCCCcCCC--HHHHHHHHHHhhCcceEEecCHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence            345899999998763    2332  33444444 79999999999999999999974  222222    235666666 8


Q ss_pred             EEEEEcCCCc--------e--EEEE--cCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 029908           73 LLLVTLGEHG--------C--RYYT--KSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFAN  140 (185)
Q Consensus        73 ~vvit~G~~G--------~--~~~~--~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~  140 (185)
                      .||||.|..+        +  +++.  +++.++++.++++.++++|+||+|+|++++.|++|.+       +.+|++.|+
T Consensus       194 ~VvvkgG~~~~~g~~~~~~~d~l~~~~~~~~~~~~~~~v~~~~t~GtGD~fsaaiaa~La~G~~-------l~eAv~~A~  266 (550)
T 3rm5_A          194 NILVKGGHIPWNDEKEKYITDVLFLGAEQKFIIFKGNFVNTTHTHGTGCTLASAIASNLARGYS-------LPQSVYGGI  266 (550)
T ss_dssp             CEEEEECC-------CCEEEEEEEETTTTEEEEEEEECCCCSCCBTHHHHHHHHHHHHHHTTCC-------HHHHHHHHH
T ss_pred             EEEEeCCCCCcccCCCCeEEEEEEEcCCCeEEEEEecCcCCCCCcChhHHHHHHHHHHHHcCCC-------HHHHHHHHH
Confidence            9999998753        3  4553  4567778888888899999999999999999999999       999999999


Q ss_pred             HHhHHHhh
Q 029908          141 ACGALSTT  148 (185)
Q Consensus       141 ~~aa~~~~  148 (185)
                      ......++
T Consensus       267 ~~v~~ai~  274 (550)
T 3rm5_A          267 EYVQNAVA  274 (550)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            75554443

>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A*

Probab=99.64  E-value=2e-15  Score=120.19  Aligned_cols=127  Identities=16%  Similarity=0.035  Sum_probs=89.7

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhc--cccEEEcCHHHHhHhhCCC-C--------CCHHHH----HHh
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWD--KAEVIKVSDVELEFLTGSD-K--------IDDESA----LSL   66 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dii~~n~~E~~~l~~~~-~--------~~~~~~----~~l   66 (185)
                      +.++++|+|+++||.....    .....+.+.++++  ++++|+||..|++.|+|.. .        .+.++.    +++
T Consensus        82 ~~a~~~~~pvVlDp~g~~~----~~~~~~~~~~ll~~~~~~vitPN~~E~~~L~g~~~~~~~gvd~~~~~~~~~~aa~~l  157 (272)
T 1ekq_A           82 KSANEHGVPVILDPVGAGA----TPFRTESARDIIREVRLAAIRGNAAEIAHTVGVTDWLIKGVDAGEGGGDIIRLAQQA  157 (272)
T ss_dssp             HHHHHTTCCEEEECTTBTT----BHHHHHHHHHHHHHSCCSEEEECHHHHHHHCC---------------HHHHHHHHHH
T ss_pred             HHHHhcCCeEEEeCCCcCc----ccchHHHHHHHHccCCCeEECCCHHHHHHHhCCCcccccCccCCCCHHHHHHHHHHH
Confidence            4567889999999975321    1222334456776  8999999999999999865 3        122222    244


Q ss_pred             cCCCCcEEEEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 029908           67 WHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANA  141 (185)
Q Consensus        67 ~~~g~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~  141 (185)
                      .+.+...|++| |..+ ++.++++.++++.+...+.+++|+||+|.|++++.+.+|.+       +.+|+++|+.
T Consensus       158 ~~~~~~vVv~~-G~~~-~i~~~~~~~~~~~~~~~~~~ttGaGD~lag~iaa~la~g~~-------~~~A~~~A~~  223 (272)
T 1ekq_A          158 AQKLNTVIAIT-GEVD-VIADTSHVYTLHNGHKLLTKVTGAGCLLTSVVGAFCAVEEN-------PLFAAIAAIS  223 (272)
T ss_dssp             HHHHTSEEEEC-SSSE-EEECSSCEEEECCCCGGGGGSTTHHHHHHHHHHHHHTTCSS-------HHHHHHHHHH
T ss_pred             HHHcCCEEEEE-CCCC-EEEeCCEEEEEcCCCccccCccCchHHHHHHHHHHHhcCCC-------HHHHHHHHHH
Confidence            44433445555 8776 56666677888887777789999999999888888888998       9999999985

>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A

Probab=99.27  E-value=1.2e-11  Score=97.93  Aligned_cols=125  Identities=17%  Similarity=0.037  Sum_probs=83.2

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhc-cccEEEcCHHHHhHhhCCCC---------CCHHH----HHHhc
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWD-KAEVIKVSDVELEFLTGSDK---------IDDES----ALSLW   67 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~-~~dii~~n~~E~~~l~~~~~---------~~~~~----~~~l~   67 (185)
                      +.+++.++|+++||.....    .....+...++++ .+++|+||..|++.|+|...         ...++    ++++.
T Consensus        80 ~~a~~~~~pvVlDpv~~~~----~~~~~~~~~~ll~~~~~vITPN~~E~~~L~g~~~~~~gvd~~~~~~~~~~~aa~~la  155 (265)
T 1v8a_A           80 EIANELGKPIVLDPVGAGA----TKFRTRVSLEILSRGVDVLKGNFGEISALLGEEGKTRGVDSLEYGEEEAKKLTMNAA  155 (265)
T ss_dssp             HHHHHHTCCEEEECTTBTT----BHHHHHHHHHHHHHCCSEEEEEHHHHHHHHHHHC----------CHHHHHHHHHHHH
T ss_pred             HHHHHcCCcEEEcCccccc----cccCHHHHHHHHHhCCcEEcCCHHHHHHHhCCcccccCcCcccccHHHHHHHHHHHH
Confidence            3567789999999975321    1122233344444 39999999999999987542         01122    22444


Q ss_pred             CCCCcEEEEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 029908           68 HPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFAN  140 (185)
Q Consensus        68 ~~g~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~  140 (185)
                      +.+...|++| |..+ ++++++..+.++.......+++|+||+|+|.+++.+++|.+        .+|+..|.
T Consensus       156 ~~~~~~Vvlk-G~~d-~i~~~~~~~~~~~g~~~~~~~~GtGD~Lsg~iaa~lA~g~~--------~~Aa~~a~  218 (265)
T 1v8a_A          156 REFNTTVAVT-GAVD-YVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFVAVTEP--------LKATTSAL  218 (265)
T ss_dssp             HHTTSEEEEE-SSSE-EEECSSCEEEECCCCGGGGGSTTHHHHHHHHHHHHHTTSCH--------HHHHHHHH
T ss_pred             HHhCcEEEEc-CCCc-EEEcCCEEEEEcCCCcCcCCccChhHHHHHHHHHHHhcCCC--------HHHHHHHH
Confidence            4444466776 6555 45666777788776656669999999999999999999864        45555554

>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}

Probab=99.13  E-value=1.4e-09  Score=86.27  Aligned_cols=128  Identities=13%  Similarity=-0.051  Sum_probs=87.8

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhh-ccccEEEcCHHHHhHhhCCCCC----C-------HH---H----
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIW-DKAEVIKVSDVELEFLTGSDKI----D-------DE---S----   62 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l-~~~dii~~n~~E~~~l~~~~~~----~-------~~---~----   62 (185)
                      +.+++.++|+++||.....   + ....+...+++ ..+++|+||..|+..|.|....    +       .+   +    
T Consensus        82 ~~a~~~~~PvVlDPVg~ga---s-~~r~~~~~~Ll~~~~~VItpN~~E~~~L~g~~~~~~GVds~~~~~~~~~~~d~~~a  157 (273)
T 3dzv_A           82 DYARQVNKLTVVDLVGYGA---S-DIRNEVGEKLVHNQPTVVKGNLSEMRTFCQLVSHGRGVDGSPLDQSEEAIEELIQA  157 (273)
T ss_dssp             HHHHHTTCCEEEECTTTTS---C-HHHHHHHHHHHHTCCSEEEEEHHHHHHHTTCCCC-------CGGGSHHHHHHHHHH
T ss_pred             HHHHHcCCcEEEchhhcCC---c-ccCHHHHHHHHhcCCcEECCCHHHHHHHhCCcccccccccccccchhhhhHHHHHH
Confidence            4577889999999975432   1 12222333332 3789999999999999986531    1       01   1    


Q ss_pred             HHHhcCCCC-cEEEEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 029908           63 ALSLWHPNL-KLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANA  141 (185)
Q Consensus        63 ~~~l~~~g~-~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~  141 (185)
                      ++++.+... ..|++|.+  ..++++++..+.++........++|+||++.|.+++.+.+|.+       +.+|+..|..
T Consensus       158 a~~la~~~~~~~VvlkG~--~D~i~dg~~~~~~~~G~~~~~~v~GtGc~Ls~~Iaa~lA~g~~-------~~~Aa~~A~~  228 (273)
T 3dzv_A          158 LRQQTQKFPQTVFLATGI--QDVLVSQEQVIVLQNGVPELDCFTGTGDLVGALVAALLGEGNA-------PMTAAVAAVS  228 (273)
T ss_dssp             HHHHHHHSTTCEEEEESS--SEEEECSSCEEEECCCCGGGGSSTTHHHHHHHHHHHHHHHTCC-------HHHHHHHHHH
T ss_pred             HHHHHHHhCCeEEEEECC--eeEEEcCCEEEEeCCCCcccCCcCCchHHHHHHHHHHHhCCCC-------HHHHHHHHHH
Confidence            224444333 57777764  3466666677777665555556799999999999999999998       8999888875


Q ss_pred             H
Q 029908          142 C  142 (185)
Q Consensus       142 ~  142 (185)
                      .
T Consensus       229 ~  229 (273)
T 3dzv_A          229 Y  229 (273)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans}

Probab=99.10  E-value=3.9e-10  Score=91.17  Aligned_cols=138  Identities=17%  Similarity=0.140  Sum_probs=86.8

Q ss_pred             cCCeEEEcCCCCCCCCCChHHHHHHHHHh-h-ccccEEEcCHHHHhHhhCCCCCCH-HHH-----HHhcCCCCcEEEEEc
Q 029908            7 AGALLSYDPNLRLPLWPSPEEAREQIMSI-W-DKAEVIKVSDVELEFLTGSDKIDD-ESA-----LSLWHPNLKLLLVTL   78 (185)
Q Consensus         7 ~g~~v~~D~~~~~~~~~~~~~~~~~~~~~-l-~~~dii~~n~~E~~~l~~~~~~~~-~~~-----~~l~~~g~~~vvit~   78 (185)
                      .++|+++||..        ..+...-.++ + +.+++|+||..|++.|++....+. ++.     +++.+ +  .+|+..
T Consensus       154 ~~~pvVlDa~g--------~~ll~~~~~l~L~~~~~viTPN~~E~~~L~g~~~~~~~~d~~~~aa~~l~~-g--~~Vvlk  222 (311)
T 3bgk_A          154 PKQTLIIDGSA--------INLLAKRKPAIWPTKQIILTPHQKEWERLSGLTIPEQIEAATQTALAHFPK-E--TILVAK  222 (311)
T ss_dssp             TTSEEEEETHH--------HHHHHHCC-CCCSCSCEEEECCSCC-CTTTCCCSTTCCHHHHHHHHTTSCT-T--CEEEEC
T ss_pred             CCCeEEEeCCh--------hhhhccChhhcCCCCCEEECCcHHHHHHHhCCCCCcchhhHHHHHHHHHhc-C--CEEEEe
Confidence            38899999951        2221110112 3 478999999999999998765432 222     24444 3  455555


Q ss_pred             CCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHc-cCCCCCChHHHHHHHHHHHHHhHHHhh---ccCCCC
Q 029908           79 GEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVD-DQSAIEDEPRLREILKFANACGALSTT---KKGAIP  154 (185)
Q Consensus        79 G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~-g~~~~~~~~~~~~a~~~a~~~aa~~~~---~~g~~~  154 (185)
                      | .+.++++ ++.+++..+..+..+++|+||+|.+.+++.+++ |.+       +.+++++|+.+....-+   ..|  .
T Consensus       223 G-~~~~i~~-~~~~~~~~~~~~~~~t~GtGD~Lag~iaa~lA~~g~~-------~~eA~~~A~~~~~~ag~~a~~~g--~  291 (311)
T 3bgk_A          223 S-HQTKIYQ-GQKIGHIQVGGPYQATGGMGDTLAGMIAGFVAQFHTD-------RFEVAAAAVFLHSYIADQLSKEA--Y  291 (311)
T ss_dssp             S-SSCEEEE-TTEEEEECCCCGGGCSTTHHHHHHHHHHHHHHHCCSC-------HHHHHHHHHHHHHHHHHHHHTTC--S
T ss_pred             C-CCeEEEE-CCEEEEECCCCCCCCCCcHHHHHHHHHHHHHHccCCC-------HHHHHHHHHHHHHHHHHHHHhhC--C
Confidence            5 5677777 444455566677789999999985555555568 999       99999999766555322   224  2


Q ss_pred             CCCCHHHHHHHHh
Q 029908          155 ALPTESEALALLK  167 (185)
Q Consensus       155 ~~~~~~~i~~~~~  167 (185)
                      ++ ...+|.+.+.
T Consensus       292 ~~-~a~dl~~~l~  303 (311)
T 3bgk_A          292 VV-LPTRISAEIT  303 (311)
T ss_dssp             SC-CHHHHHHHHH
T ss_pred             CC-CHHHHHHHHH
Confidence            33 5666666554

>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A

Probab=99.07  E-value=8.7e-10  Score=89.08  Aligned_cols=117  Identities=15%  Similarity=0.028  Sum_probs=76.9

Q ss_pred             cCCeEEEcCCCCCCCCCChHHHHHHHHHhh--ccccEEEcCHHHHhHhhCCCCCCHH-HH-----HHhcCCCCcEEEEEc
Q 029908            7 AGALLSYDPNLRLPLWPSPEEAREQIMSIW--DKAEVIKVSDVELEFLTGSDKIDDE-SA-----LSLWHPNLKLLLVTL   78 (185)
Q Consensus         7 ~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l--~~~dii~~n~~E~~~l~~~~~~~~~-~~-----~~l~~~g~~~vvit~   78 (185)
                      .++|+++||+.        ..+...-.+++  +.+++|+||..|++.|++....+.+ +.     +++   ++  +|+..
T Consensus       140 ~~~pvVlDa~g--------~~ll~~~~~~l~~~~~~viTPN~~E~~~L~g~~~~~~~~~~a~~aA~~l---g~--~VvlK  206 (310)
T 2r3b_A          140 KQQWLIIDGSA--------ITLFSQGNFSLTYPEKVVFTPHQMEWQRLSHLPIEQQTLANNQRQQAKL---GS--TIVLK  206 (310)
T ss_dssp             TTCEEEEETHH--------HHHHHHTTCCCSSGGGEEEECCHHHHHHHHCCCGGGCCHHHHHHHHHHH---TS--EEEEC
T ss_pred             CCCcEEEcCCc--------chhcccchhhhcCCCCEEEcCCHHHHHHHhCCCCCcccchHHHHHHHHh---Cc--EEEEe
Confidence            48999999952        22211101123  4688999999999999987643221 22     233   43  55555


Q ss_pred             CCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHH
Q 029908           79 GEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGAL  145 (185)
Q Consensus        79 G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~  145 (185)
                      | .+.++++ ++..++..+..+..+++|+||++.+.+++.+++|.+       +.+++..|+.+.+.
T Consensus       207 G-~~~vi~~-~~~~~~~~~g~~~~~t~GtGD~Lag~Iaa~lA~g~~-------~~eA~~~A~~~~~~  264 (310)
T 2r3b_A          207 S-HRTTIFH-AGEPFQNTGGNPGMATGGTGDTLAGIIAGFLAQFKP-------TIETIAGAVYLHSL  264 (310)
T ss_dssp             S-TTCEEEC-SSSCEECCCCCGGGCSTTHHHHHHHHHHHHHHHSCS-------SHHHHHHHHHHHHH
T ss_pred             C-CceEEEE-CCEEEEECCCCCCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHH
Confidence            5 4677776 433445555667788999999986666555679998       88999888755555

>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*

Probab=98.85  E-value=1.7e-08  Score=86.44  Aligned_cols=145  Identities=17%  Similarity=0.060  Sum_probs=91.7

Q ss_pred             HHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCC----CHHHHHHhcCCCCcEEEEEcC
Q 029908            4 AKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI----DDESALSLWHPNLKLLLVTLG   79 (185)
Q Consensus         4 a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~----~~~~~~~l~~~g~~~vvit~G   79 (185)
                      +++.++|+++||..-.-+   .   .+.+ +..+..++|+||..|++.|++....    +.+.++++.+.+ ..+|+..|
T Consensus       344 l~~~~~pvVlDadgl~~l---~---~~ll-~~~~~~~vlTPN~~E~~~L~g~~~~~~~~d~~aa~~la~~~-~~~VvlKG  415 (502)
T 3rss_A          344 LKTLEKPAVIDADAINVL---D---TSVL-KERKSPAVLTPHPGEMARLVKKTVGDVKYNYELAEEFAKEN-DCVLVLKS  415 (502)
T ss_dssp             HHHCCSCEEECHHHHHTC---C---HHHH-HHCSSCEEECCCHHHHHHHHTCCHHHHTTCHHHHHHHHHHH-TSEEEECS
T ss_pred             HHhcCCCEEEeCcccchh---c---HHHH-hccCCCEEEeCCHHHHHHHhCCCccchHHHHHHHHHHHHHc-CCEEEEeC
Confidence            456799999999521100   0   1122 2235689999999999999986531    123333444332 23555566


Q ss_pred             CCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHH---hhccCCCCCC
Q 029908           80 EHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALS---TTKKGAIPAL  156 (185)
Q Consensus        80 ~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~---~~~~g~~~~~  156 (185)
                      . +.++++++..+ +.....+..+++|+||+|++.+.+.+++|.+       +.+++..|+.....+   ... |.. ++
T Consensus       416 ~-~~vi~~~~~~~-~~~~g~~~~at~GsGD~Lag~iaa~lA~g~~-------~~~Aa~~A~~~hg~Ag~~aa~-g~~-~~  484 (502)
T 3rss_A          416 A-TTIVTDGEKTL-FNITGNTGLSKGGSGDVLTGMIAGFIAQGLS-------PLEASTVSVYLHGFAAELFEQ-DER-GL  484 (502)
T ss_dssp             S-SEEEECSSCEE-EECCCCGGGSSTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHHTCSS-CGG-GC
T ss_pred             C-CeEEEcCCEEE-EECCCCCccccCCchHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHHHHhc-CCC-Cc
Confidence            4 56666666444 4334556778999999998888888889999       999999987655554   332 322 33


Q ss_pred             CCHHHHHHHHhc
Q 029908          157 PTESEALALLKR  168 (185)
Q Consensus       157 ~~~~~i~~~~~~  168 (185)
                       ...+|.+.+.+
T Consensus       485 -~a~dl~~~lp~  495 (502)
T 3rss_A          485 -TASELLRLIPE  495 (502)
T ss_dssp             -CHHHHHHHHHH
T ss_pred             -CHHHHHHHHHH
Confidence             55666665543

>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A

Probab=98.85  E-value=1.4e-08  Score=80.82  Aligned_cols=144  Identities=16%  Similarity=0.104  Sum_probs=89.8

Q ss_pred             HHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCC----H-HHHHHhcCCCCcEEEEEc
Q 029908            4 AKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKID----D-ESALSLWHPNLKLLLVTL   78 (185)
Q Consensus         4 a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~----~-~~~~~l~~~g~~~vvit~   78 (185)
                      +.+.+.|+++|...-..         +. .......++|+||..|++.|++....+    . +.++++.+.+. .+|+-.
T Consensus       121 ~l~~~~p~VlDAdal~~---------~~-l~~~~~~~vlTPN~~E~~~L~g~~~~~~~~d~~~aa~~la~~~~-~~VvlK  189 (279)
T 3rpz_A          121 VLTADCPVILDAGALAK---------RT-YPKREGPVILTPHPGEFFRMTGVPVNELQKKRAEYAKEWAAQLQ-TVIVLK  189 (279)
T ss_dssp             HTTSSSCEEECGGGCCS---------CC-CCCCSSCEEECCCHHHHHHHHCCCHHHHTTSHHHHHHHHHHHHT-SEEEEC
T ss_pred             HHhhCCCEEEECCccch---------hh-hhhccCCEEEecCHHHHHHHhCCCccchHHHHHHHHHHHHHHcC-eEEEEe
Confidence            34467899999853210         00 001245789999999999999876322    1 12234433222 244444


Q ss_pred             CCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHH----HhHHHhhccCCCC
Q 029908           79 GEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANA----CGALSTTKKGAIP  154 (185)
Q Consensus        79 G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~----~aa~~~~~~g~~~  154 (185)
                      |. +.+++++++.+++.....+...++|+||++.+.+...+.+|.+       +.+++..|+.    ++-...++.|.. 
T Consensus       190 G~-~~vi~~~~g~~~~~~~g~~~~at~GtGD~Lag~iaa~lA~g~~-------~~~A~~~a~~lh~~Ag~~a~~~~g~~-  260 (279)
T 3rpz_A          190 GN-QTVIAFPDGDCWLNPTGNGALAKGGTGDTLTGMILGMLCCHED-------PKHAVLNAVYLHGACAELWTDEHSAH-  260 (279)
T ss_dssp             ST-TCEEECTTSCEEECCCCCGGGCSTTHHHHHHHHHHHHHHHCSS-------HHHHHHHHHHHHHHHHHHHHHHSCTT-
T ss_pred             CC-CcEEECCCceEEEeCCCCCCCCCCChHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence            53 5666766655566555566778999999987777777789998       9999998863    344445555543 


Q ss_pred             CCCCHHHHHHHHhc
Q 029908          155 ALPTESEALALLKR  168 (185)
Q Consensus       155 ~~~~~~~i~~~~~~  168 (185)
                      ++ ...||.+.+.+
T Consensus       261 ~~-~a~dl~~~lp~  273 (279)
T 3rpz_A          261 TL-LAHELSDILPR  273 (279)
T ss_dssp             SC-CHHHHHHHHHH
T ss_pred             Cc-CHHHHHHHHHH
Confidence            33 55666665543

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=98.58  E-value=7.3e-07  Score=76.96  Aligned_cols=127  Identities=17%  Similarity=0.006  Sum_probs=82.1

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhc--cccEEEcCHHHHhHhhCCCC------C-----CHHH----HH
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWD--KAEVIKVSDVELEFLTGSDK------I-----DDES----AL   64 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dii~~n~~E~~~l~~~~~------~-----~~~~----~~   64 (185)
                      +.+++.++|+++||.....    .....+...++++  .+++|+||..|+..|.|...      +     +.++    ++
T Consensus       328 ~~a~~~~~PvVlDPVg~~a----~~~r~~~~~~Ll~~~~~~vItpN~~E~~~L~g~~~~~~~GVds~~~~~~~d~~~aA~  403 (540)
T 3nl6_A          328 RAYNDVKRPIVFDPVGYSA----TETRLLLNNKLLTFGQFSCIKGNSSEILGLAELNKERMKGVDASSGISNELLIQATK  403 (540)
T ss_dssp             HHHHTTTCCEEEECTTCTT----SHHHHHHHHHHTTSCCCSEEEECHHHHHHHTTC--------------CCHHHHHHHH
T ss_pred             HHHHHcCCCEEEChHHhhc----ccccHHHHHHHHhhCCCeEECCCHHHHHHHhCCCcccccccccccccCHHHHHHHHH
Confidence            3567889999999976432    2333455667777  79999999999999998652      0     0122    22


Q ss_pred             HhcCCCCcEEEEEcCCCceEEEEc-------------------CceeEecCcc-cccccCCCcchHHHHHHHHHHHccC-
Q 029908           65 SLWHPNLKLLLVTLGEHGCRYYTK-------------------SFKGAVDAFR-VKTVDTTGAGDAFVGALLCKIVDDQ-  123 (185)
Q Consensus        65 ~l~~~g~~~vvit~G~~G~~~~~~-------------------~~~~~~~~~~-~~~~d~~GaGDaf~A~~~~~l~~g~-  123 (185)
                      ++.+.....|++|. . ..++.++                   +..+.++... .-....+|.||++.+.+++.+..+. 
T Consensus       404 ~lA~~~~~vVvlkG-~-~D~I~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~m~~vtGtGc~Lsg~Iaa~la~~~~  481 (540)
T 3nl6_A          404 IVAFKYKTVAVCTG-E-FDFIADGTIEGKYSLSKGTNGTSVEDIPCVAVEAGPIEIMGDITASGCSLGSTIACMIGGQPS  481 (540)
T ss_dssp             HHHHHTTSEEEECS-S-SEEEEECCGGGBCCSSSCCSSCCTTSSCEEEEECSCCGGGGSSTTHHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHhCCEEEEcC-C-CeEEECCCccccccccccccccccCCccEEEECCCChhhccCccCchHHHHHHHHHHHhcCcC
Confidence            44333334555554 2 4555665                   3455555544 2233469999999999999998886 


Q ss_pred             --CCCCChHHHHHHHHHHHH
Q 029908          124 --SAIEDEPRLREILKFANA  141 (185)
Q Consensus       124 --~~~~~~~~~~~a~~~a~~  141 (185)
                        +       +.+|+..|..
T Consensus       482 ~~~-------~~~Aa~~a~~  494 (540)
T 3nl6_A          482 EGN-------LFHAVVAGVM  494 (540)
T ss_dssp             TCB-------HHHHHHHHHH
T ss_pred             CCC-------HHHHHHHHHH
Confidence              5       6777776663

>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}

Probab=98.56  E-value=4.9e-07  Score=71.26  Aligned_cols=125  Identities=18%  Similarity=0.011  Sum_probs=76.2

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhh-ccccEEEcCHHHHhHhhCCCCC---------CHHHH----HHhc
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIW-DKAEVIKVSDVELEFLTGSDKI---------DDESA----LSLW   67 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l-~~~dii~~n~~E~~~l~~~~~~---------~~~~~----~~l~   67 (185)
                      +.|++.|+|+++||.....    .....+...+++ .++++|++|..|...|.|....         ..++.    +++.
T Consensus        80 ~~A~~~~~PvVLDPVg~ga----s~~R~~~~~~ll~~~~~vIrgN~sEi~~L~g~~~~~~gvds~~~~~~d~~~~a~~lA  155 (265)
T 3hpd_A           80 EIANELGKPIVLDPVGAGA----TKFRTRVSLEILSRGVDVLKGNFGEISALLGEEGKTRGVDSLEYGEEEAKKLTMNAA  155 (265)
T ss_dssp             HHHHHHTCCEEEECTTBTT----BHHHHHHHHHHHHHCCSEEEEEHHHHHHHHHHHC----------CHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEcCCCCCC----cHHHHHHHHHHHhcCCcEEcCCHHHHHHHhcccCCCCCccCccccHHHHHHHHHHHH
Confidence            4678899999999975321    222333344433 3689999999999999864311         11222    2332


Q ss_pred             CCCCcEEEEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 029908           68 HPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFAN  140 (185)
Q Consensus        68 ~~g~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~  140 (185)
                      +..-..|++| | ...++.+++..+.++.-....-..+|.||++.+.+.+.+.++ +       +.+++..|+
T Consensus       156 ~~~~~vVvlk-G-~~d~I~dg~~~~~~~~G~~~m~~vtGtGc~Lsg~iaa~lA~~-~-------~~~Aa~~a~  218 (265)
T 3hpd_A          156 REFNTTVAVT-G-AVDYVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFVAVT-E-------PLKATTSAL  218 (265)
T ss_dssp             HHTTSEEEEE-S-SSEEEECSSCEEEECCCCGGGGGSTTHHHHHHHHHHHHHTTS-C-------HHHHHHHHH
T ss_pred             HHhCCEEEEe-C-CCeEEEcCCEEEEECCCChHhhcCCccchHHHHHHHHHHhcC-C-------hHHHHHHHH
Confidence            2222245554 4 356667777666665544444445899999887777776676 4       456666555

>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori}

Probab=97.68  E-value=0.00056  Score=58.08  Aligned_cols=141  Identities=16%  Similarity=0.126  Sum_probs=83.4

Q ss_pred             eEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCC-----CCCCH-----HHHHHhcCCC-CcEEEEEc
Q 029908           10 LLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGS-----DKIDD-----ESALSLWHPN-LKLLLVTL   78 (185)
Q Consensus        10 ~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~-----~~~~~-----~~~~~l~~~g-~~~vvit~   78 (185)
                      |+++|...-   +.      ..+.+.++...+|+||..|++.|++.     +..+.     +.++++.+.. ...|+++.
T Consensus       317 p~VlDADaL---~~------~~~~~~~~~~~VlTPh~~E~~rL~g~~~~~v~~~~~~~d~~~aa~~la~~~g~~~VvlKG  387 (475)
T 3k5w_A          317 PCVLDAGVF---YH------KEILQALEKEAVLTPHPKEFLSLLNLVGINISMLELLDNKLEIARDFSQKYPKVVLLLKG  387 (475)
T ss_dssp             CEEEEGGGG---GS------GGGGTTTTSSEEEECCHHHHHHHHHHTSCCCCTTSGGGSCC--CHHHHHHCTTEEEEECS
T ss_pred             CEEEECccc---CC------chhhhccCCCEEECCCHHHHHHHhCCccCCCCcchhHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            889987421   00      01123445668999999999999875     32221     1122343333 33455554


Q ss_pred             CCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhc-cCCCCCCC
Q 029908           79 GEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTK-KGAIPALP  157 (185)
Q Consensus        79 G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~-~g~~~~~~  157 (185)
                      +  ..++.+++..+..+ ....-..+.|+||++++.+.+.+++|.+       +.+++..|...-..+-+. .+. .++ 
T Consensus       388 ~--~~vI~~~~~~~~~~-~g~~~mat~GtGdvLsg~Iaa~lA~g~~-------~~~Aa~~a~~lhg~ag~~a~~~-~~~-  455 (475)
T 3k5w_A          388 A--NTLIAHQGQVFINI-LGSVALAKAGSGDVLAGLILSLLSQNYT-------PLDAAINASLAHALASLEFKNN-YAL-  455 (475)
T ss_dssp             S--SEEEEETTEEEEEC-CCCGGGCSTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHGGGGCSST-TCC-
T ss_pred             C--CCEEECCCEEEEEC-CCCCCCCCCCHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHhccC-CCc-
Confidence            3  34455544444333 3344556899999999999999999998       888888776443333222 121 244 


Q ss_pred             CHHHHHHHHhcCcc
Q 029908          158 TESEALALLKRSTI  171 (185)
Q Consensus       158 ~~~~i~~~~~~~~~  171 (185)
                      ...+|.+.+.+.+.
T Consensus       456 ~a~dl~~~l~~~~~  469 (475)
T 3k5w_A          456 TPLDLIEKIKQLEG  469 (475)
T ss_dssp             CHHHHHHHHHTCC-
T ss_pred             CHHHHHHHhhhhhc
Confidence            66788777766543

>3drw_A ADP-specific phosphofructokinase; AMP, GLYC kinase, magnesium, metal-binding, transferase, structural G PSI-2, protein structure initiative; HET: AMP; 1.90A {Pyrococcus horikoshii} PDB: 1u2x_A

Probab=96.10  E-value=0.027  Score=47.67  Aligned_cols=47  Identities=11%  Similarity=0.131  Sum_probs=38.7

Q ss_pred             HHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCC
Q 029908            5 KEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGS   55 (185)
Q Consensus         5 ~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~   55 (185)
                      ++.+++|-|....-    .+.+-....+..++|++|.+=+|++|+..+.+.
T Consensus       273 ~~~~~~iH~E~As~----~~~~l~~~i~~~i~p~vDSlGmNEqELa~l~~~  319 (474)
T 3drw_A          273 KEKDVKIHVEFASV----QDRKLRKKIITNILPFVDSVGIDEAEIAQILSV  319 (474)
T ss_dssp             HHTTCEEEEECCCC----SCHHHHHHHHHHTGGGSSEEEEEHHHHHHHHHH
T ss_pred             cCCCCeEEEEeCcc----ccHHHHHHHHHHhcccccccccCHHHHHHHHHH
Confidence            46799999998753    346677777889999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d1rkda_	306	c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId:	2e-27
d1vm7a_	299	c.72.1.1 (A:) Ribokinase {Thermotoga maritima [Tax	4e-22
d1v19a_	302	c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Ther	5e-22
d2afba1	333	c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase	3e-21
d1tyya_	304	c.72.1.1 (A:) Aminoimidazole riboside kinase {Salm	1e-20
d2dcna1	308	c.72.1.1 (A:2-309) Hypothetical fructokinase ST247	3e-20
d2fv7a1	308	c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapien	3e-18
d2absa1	350	c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma g	2e-17
d1bx4a_	342	c.72.1.1 (A:) Adenosine kinase {Human (Homo sapien	7e-17
d1vk4a_	288	c.72.1.1 (A:) Hypothetical protein TM0415 {Thermot	2e-16
d2abqa1	306	c.72.1.1 (A:1-306) Fructose 1-phosphate kinase Fru	6e-14
d2ajra1	319	c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {T	6e-13
d2f02a1	313	c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase Lac	7e-12
d1vi9a_	288	c.72.1.5 (A:) Pyridoxamine kinase {Escherichia col	7e-05

>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]} Length = 306

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (255), Expect = 2e-27
 Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 11/151 (7%)

Query: 22  WPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLW----HPNLKLLLVT 77
             +P  ARE    +    ++I  ++ E E LTG    +DE A           ++ +L+T
Sbjct: 161 ALNPAPARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLIT 220

Query: 78  LGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILK 137
           LG  G           V  FRV+ VDT  AGD F GAL+  +++++        L E ++
Sbjct: 221 LGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALLEEKP-------LPEAIR 273

Query: 138 FANACGALSTTKKGAIPALPTESEALALLKR 168
           FA+A  A++ T+KGA P++P   E  A L R
Sbjct: 274 FAHAAAAIAVTRKGAQPSVPWREEIDAFLDR 304

>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]} Length = 299

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Thermotoga maritima [TaxId: 2336]

 Score = 88.6 bits (218), Expect = 4e-22
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 67  WHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAI 126
               +K ++V LG+ G     K+ K     F+VK VDTT AGD F GA    + + ++  
Sbjct: 204 LELGVKNVIVKLGDKGVLLVNKNEKKHFPTFKVKAVDTTAAGDVFNGAFAVALSEGKN-- 261

Query: 127 EDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
                  E + F  A  A+S T+ GA  ++P   E  A LK
Sbjct: 262 -----PEEAVIFGTAAAAISVTRLGAQSSIPAREEVEAFLK 297

>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: 2-keto-3-deoxygluconate kinase
species: Thermus thermophilus [TaxId: 274]

 Score = 88.3 bits (217), Expect = 5e-22
 Identities = 46/167 (27%), Positives = 66/167 (39%), Gaps = 14/167 (8%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           M+ AK  G  +S D N R  LW  PEEAR  +       +++ +S+ E E L G  +   
Sbjct: 150 MEEAKRRGVRVSLDVNYRQTLWS-PEEARGFLERALPGVDLLFLSEEEAELLFGRVEEAL 208

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
                    +   +++  G  G   +    +    AF V+ VD  GAGDAF    L   V
Sbjct: 209 ------RALSAPEVVLKRGAKGAWAFVDGRRVEGSAFAVEAVDPVGAGDAFAAGYLAGAV 262

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
                      + E L+ AN  GA     +G     P   +   LLK
Sbjct: 263 WGLP-------VEERLRLANLLGASVAASRGDHEGAPYREDLEVLLK 302

>d2afba1 c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase {Thermotoga maritima, TM0067 [TaxId: 2336]} Length = 333

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: 2-keto-3-deoxygluconate kinase
species: Thermotoga maritima, TM0067 [TaxId: 2336]

 Score = 87.0 bits (214), Expect = 3e-21
 Identities = 36/188 (19%), Positives = 66/188 (35%), Gaps = 31/188 (16%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
           +K A E G  +S D N R     + EEA++ ++   +  +V+  ++ ++E + G      
Sbjct: 154 LKVANEKGVTVSCDLNYRAR-LWTKEEAQKVMIPFMEYVDVLIANEEDIEKVLGISVEGL 212

Query: 61  ESALS--------------LWHPNLKLLLVTL--------GEHGCRYYTKSFKGAVDAFR 98
           +                      N K + +TL               +        + + 
Sbjct: 213 DLKTGKLNREAYAKIAEEVTRKYNFKTVGITLRESISATVNYWSVMVFENGQPHFSNRYE 272

Query: 99  VKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPT 158
           +  VD  GAGD+F GAL+   +            ++  +FA A   L  T  G    + +
Sbjct: 273 IHIVDRVGAGDSFAGALIYGSLMGFD-------SQKKAEFAAAASCLKHTIPGDFV-VLS 324

Query: 159 ESEALALL 166
             E   L 
Sbjct: 325 IEEIEKLA 332

>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]} Length = 304

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Aminoimidazole riboside kinase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 84.9 bits (208), Expect = 1e-20
 Identities = 59/166 (35%), Positives = 80/166 (48%), Gaps = 3/166 (1%)

Query: 1   MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
            +  +EAG  + +D NLR  +W + +E  E I      A + KVS  EL  L+G+    D
Sbjct: 141 ARRMREAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQD 200

Query: 61  ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
            +   L        +++LG  G    T   +    A RV  VDTTGAGDAFVG LL  + 
Sbjct: 201 -ARYYLRDLGCDTTIISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTLS 259

Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALL 166
                  D   L E +  ANACGA++ T KGA+ ALP   +    L
Sbjct: 260 RANCW--DHALLAEAISNANACGAMAVTAKGAMTALPFPDQLNTFL 303

>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]} Length = 308

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Hypothetical fructokinase ST2478
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 83.7 bits (205), Expect = 3e-20
 Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 8/155 (5%)

Query: 13  YDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLK 72
           +D N+RL LW + E A+ +I+ +  K  +  +     +      + D + A   +    +
Sbjct: 160 FDTNIRLKLWSAEE-AKREILKLLSKFHLKFLITDTDDSKIILGESDPDKAAKAFSDYAE 218

Query: 73  LLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRL 132
           ++++ LG  G   Y    K     ++V   D TGAGDA  G  L               +
Sbjct: 219 IIVMKLGPKGAIVYYDGKKYYSSGYQVPVEDVTGAGDALGGTFLSLYYKGFE-------M 271

Query: 133 REILKFANACGALSTTKKGAIPALPTESEALALLK 167
            + L +A     L+   +G    LPT  +    L+
Sbjct: 272 EKALDYAIVASTLNVMIRGDQENLPTTKDIETFLR 306

>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (191), Expect = 3e-18
 Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 11/152 (7%)

Query: 21  LWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL----SLWHPNLKLLLV 76
           L+       +     +  ++V   ++ E E LTG        A      L     +++++
Sbjct: 161 LFNPAPAIADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVII 220

Query: 77  TLGEHGCRYYTKSFK--GAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLRE 134
           TLG  GC   +++      +   +VK VDTTGAGD+FVGAL   +     A      L +
Sbjct: 221 TLGAEGCVVLSQTEPEPKHIPTEKVKAVDTTGAGDSFVGALAFYL-----AYYPNLSLED 275

Query: 135 ILKFANACGALSTTKKGAIPALPTESEALALL 166
           +L  +N   A+S    G   + P + +    L
Sbjct: 276 MLNRSNFIAAVSVQAAGTQSSYPYKKDLPLTL 307

>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii [TaxId: 5811]} Length = 350

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Adenosine kinase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 76.0 bits (185), Expect = 2e-17
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 38/167 (22%)

Query: 17  LRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNL----- 71
           L L      E  ++ + S+     ++  ++ E   L     +      +L   N      
Sbjct: 186 LNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKTALSTANKEHAVE 245

Query: 72  ------------------KLLLVTLGEHGCRYYTKSFKGAVDAFRV--------KTVDTT 105
                             KL+++T G +      ++  G V    V        K VDT 
Sbjct: 246 VCTGALRLLTAGQNTSATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTN 305

Query: 106 GAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGA 152
           GAGDAFVG  L  +   ++       +++ +   NAC        G 
Sbjct: 306 GAGDAFVGGFLYALSQGKT-------VKQCIMCGNACAQDVIQHVGF 345

>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Adenosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 7e-17
 Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 21/151 (13%)

Query: 22  WPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD----------ESALSLWHPNL 71
               +  +E +M +    +++  ++ E          +           ++   +     
Sbjct: 197 PFISQFYKESLMKVMPYVDILFGNETEAATFAREQGFETKDIKEIAKKTQALPKMNSKRQ 256

Query: 72  KLLLVTLGEHGCRYYTKS---FKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIED 128
           ++++ T G       T+S       +D  + + +DT GAGDAFVG  L ++V D+     
Sbjct: 257 RIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGAGDAFVGGFLSQLVSDKP---- 312

Query: 129 EPRLREILKFANACGALSTTKKGA-IPALPT 158
              L E ++  +   ++   + G   P  P 
Sbjct: 313 ---LTECIRAGHYAASIIIRRTGCTFPEKPD 340

>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]} Length = 288

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Hypothetical protein TM0415
species: Thermotoga maritima [TaxId: 2336]

 Score = 73.1 bits (178), Expect = 2e-16
 Identities = 25/167 (14%), Positives = 46/167 (27%), Gaps = 14/167 (8%)

Query: 1   MKAAKEAGALLSYDPNLRLP---LWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDK 57
           +   +     LS D    +             E         ++ KV   E E LTG++ 
Sbjct: 133 IPVLRRKVMFLSADAQGFVRVPENEKLVYRDWEMKEKYLKYLDLFKVDSREAETLTGTND 192

Query: 58  IDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLC 117
           + +         +    ++                            TG GD    A L 
Sbjct: 193 LRESCR---IIRSFGAKIILATHASGVIVFDGNFYEASFRSWSLEGRTGRGDTCTAAFLV 249

Query: 118 KIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALA 164
                   +  +  + +  KFA A  ++     G  P    + EA++
Sbjct: 250 ------GFVFKKMSIEKATKFAAAVTSVKMRHPG--PLRREDLEAIS 288

>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]} Length = 306

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Fructose 1-phosphate kinase FruB
species: Bacillus halodurans [TaxId: 86665]

 Score = 66.2 bits (160), Expect = 6e-14
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 11/102 (10%)

Query: 67  WHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAI 126
               ++ +LV+    G  + +      V+    +  ++ GAGD+ V   L  + + +S  
Sbjct: 207 IGEGIESILVSFAGDGALFASAEGMFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKS-- 264

Query: 127 EDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
                L + + FA A G+ +    G      T  E   L ++
Sbjct: 265 -----LEDAVPFAVAAGSATAFSDG----FCTREEVERLQQQ 297

>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]} Length = 319

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Putative sugar kinase TM0828
species: Thermotoga maritima [TaxId: 2336]

 Score = 63.5 bits (153), Expect = 6e-13
 Identities = 21/155 (13%), Positives = 43/155 (27%), Gaps = 13/155 (8%)

Query: 22  WPSPEEAREQIMSIWDKAEVIKVSD----VELEFLTGSDKIDDESALSLWHPNLKLLLVT 77
                   E+I    +   V+K            +      D            ++ +V+
Sbjct: 169 VEQTPRLLERIYEGPEFPNVVKPDLRGNHASFLGVDLKTFDDYVKLAEKLAEKSQVSVVS 228

Query: 78  LG-EHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREIL 136
              ++      +          + T    GAGDA+V  ++   +   +         E+ 
Sbjct: 229 YEVKNDIVATREGVWLIRSKEEIDTSHLLGAGDAYVAGMVYYFIKHGANFL------EMA 282

Query: 137 KFANACGALSTTKKGAIPALPTESEALALLKRSTI 171
           KF  A    +T +K     +P            T+
Sbjct: 283 KFGFASALAATRRKEK--YMPDLEAIKKEYDHFTV 315

>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Tagatose-6-phosphate kinase LacC
species: Enterococcus faecalis [TaxId: 1351]

 Score = 60.5 bits (145), Expect = 7e-12
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 9/93 (9%)

Query: 81  HGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFAN 140
            G           V    ++  +  G+GDA +  L   +  D           E+LK+  
Sbjct: 227 DGAIAKHHDQFYRVKIPTIQAKNPVGSGDATIAGLAYGLAKDAP-------AAELLKWGM 279

Query: 141 ACGALSTTKKGAIPALPTESEALALLKRSTIID 173
           A G  +  ++               L    +++
Sbjct: 280 AAGMANAQERMT--GHVDVENVKKHLMNIQVVE 310

>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli [TaxId: 562]} Length = 288

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: PfkB-like kinase
domain: Pyridoxamine kinase
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (92), Expect = 7e-05
 Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 23/153 (15%)

Query: 22  WPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALS----LWHPNLKLLLVT 77
             +P  A   +      +++I  + VELE L      + E A+     L     +++LV 
Sbjct: 123 IVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLVK 182

Query: 78  LGEHGCRYY----------TKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIE 127
                               +++  +            G GD   G LL K++   +   
Sbjct: 183 HLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGAT--- 239

Query: 128 DEPRLREILKFANAC--GALSTTKKGAIPALPT 158
               L+E L+   A     + TTK      L  
Sbjct: 240 ----LQEALEHVTAAVYEIMVTTKAMQEYELQV 268

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1v19a_	302	2-keto-3-deoxygluconate kinase {Thermus thermophil	99.95
d2f02a1	313	Tagatose-6-phosphate kinase LacC {Enterococcus fae	99.94
d1rkda_	306	Ribokinase {Escherichia coli [TaxId: 562]}	99.94
d1tyya_	304	Aminoimidazole riboside kinase {Salmonella typhimu	99.93
d2abqa1	306	Fructose 1-phosphate kinase FruB {Bacillus halodur	99.93
d2afba1	333	2-keto-3-deoxygluconate kinase {Thermotoga maritim	99.93
d2dcna1	308	Hypothetical fructokinase ST2478 {Sulfolobus tokod	99.92
d2ajra1	319	Putative sugar kinase TM0828 {Thermotoga maritima	99.92
d1vm7a_	299	Ribokinase {Thermotoga maritima [TaxId: 2336]}	99.91
d2fv7a1	308	Ribokinase {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1bx4a_	342	Adenosine kinase {Human (Homo sapiens) [TaxId: 960	99.88
d2absa1	350	Adenosine kinase {Toxoplasma gondii [TaxId: 5811]}	99.84
d1vk4a_	288	Hypothetical protein TM0415 {Thermotoga maritima [	99.82
d1vi9a_	288	Pyridoxamine kinase {Escherichia coli [TaxId: 562]	99.76
d1ub0a_	258	4-amino-5-hydroxymethyl-2-methylpyrimidine phospha	99.69
d1jxha_	266	4-amino-5-hydroxymethyl-2-methylpyrimidine phospha	99.62
d1lhpa_	309	Pyridoxal kinase {Sheep (Ovis aries) [TaxId: 9940]	99.61
d1ekqa_	269	Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Ba	98.92
d1v8aa_	264	Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Ar	98.65
d1kyha_	275	Hypothetical protein YxkO {Bacillus subtilis [TaxI	98.49
d2ax3a1	278	Hypothetical protein TM0922, C-terminal domain {Th	97.79
d1u2xa_	450	ADP-specific phosphofructokinase {Pyrococcus horik	93.58

>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: 2-keto-3-deoxygluconate kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=1.4e-27  Score=189.04  Aligned_cols=152  Identities=30%  Similarity=0.412  Sum_probs=134.5

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      +.+++.++++.+|++.++..+. .....+.+.+.++++|++++|++|+..+.+....      .+...+.+.+|||+|.+
T Consensus       151 ~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~e~~~~~~~~~~------~~~~~~~~~viit~G~~  223 (302)
T d1v19a_         151 EEAKRRGVRVSLDVNYRQTLWS-PEEARGFLERALPGVDLLFLSEEEAELLFGRVEE------ALRALSAPEVVLKRGAK  223 (302)
T ss_dssp             HHHHTTTCEEEEECCCCTTTCC-HHHHHHHHHHHGGGCSEEEEEHHHHHHHHSSTTH------HHHHTCCSEEEEECTTS
T ss_pred             HHHHhcCCccccccchhhhccc-hhhhHHHHHhhhhhccchhhhhhhhhhhhhhhhh------hhhhccceEEEEecCCC
Confidence            4567889999999998876655 4566677888999999999999999988765432      22236889999999999


Q ss_pred             ceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHHH
Q 029908           82 GCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESE  161 (185)
Q Consensus        82 G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~~  161 (185)
                      |++++++++.+++|+++++++|++||||+|+|||++++++|.+       +++|+++|+++|+.++++.|+.+++|+++|
T Consensus       224 G~~~~~~~~~~~~p~~~v~vvDttGAGDaf~a~~~~~~~~g~~-------~~~a~~~a~~~Aa~~v~~~G~~~~~p~~~~  296 (302)
T d1v19a_         224 GAWAFVDGRRVEGSAFAVEAVDPVGAGDAFAAGYLAGAVWGLP-------VEERLRLANLLGASVAASRGDHEGAPYRED  296 (302)
T ss_dssp             CEEEEETTEEEECCCCCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSSSSTTCCCHHH
T ss_pred             CCccccccccccccccccccCCCCChhHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcCCCCCCCCCCHHH
Confidence            9999999999999999999999999999999999999999999       999999999999999999999999999999


Q ss_pred             HHHHHh
Q 029908          162 ALALLK  167 (185)
Q Consensus       162 i~~~~~  167 (185)
                      ++++++
T Consensus       297 i~~~l~  302 (302)
T d1v19a_         297 LEVLLK  302 (302)
T ss_dssp             HHHCC-
T ss_pred             HHHHhC
Confidence            998864

>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Tagatose-6-phosphate kinase LacC
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.94  E-value=3.4e-26  Score=182.87  Aligned_cols=155  Identities=19%  Similarity=0.202  Sum_probs=132.8

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCC--HHHH----HHhcCCCCcEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKID--DESA----LSLWHPNLKLLL   75 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~--~~~~----~~l~~~g~~~vv   75 (185)
                      +.++++|+++++|+..        .... ...+.+.+++++++|+.|+..+++....+  .+..    .++...|++.++
T Consensus       151 ~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~~g~~~vi  221 (313)
T d2f02a1         151 QKAHAQEVKVLLDTSG--------DSLR-QVLQGPWKPYLIKPNLEELEGLLGQDFSENPLAAVQTALTKPMFAGIEWIV  221 (313)
T ss_dssp             HHHHHTTCEEEEECCT--------HHHH-HHHHSSCCCSEECCBHHHHHHHHTCCCCSSCHHHHHHHHTSGGGTTCSEEE
T ss_pred             HHHHhcCCceeecchH--------HHHH-HHhhhcccceEEEehhhhHHHhhccccccchhhHHHHHHHHHHhcCCceeE
Confidence            4678899999999863        2233 23445678999999999999999875432  2222    255568999999


Q ss_pred             EEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCC
Q 029908           76 VTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPA  155 (185)
Q Consensus        76 it~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~  155 (185)
                      +|+|++|++++++++.+++++++++++|++||||+|+|||+++|++|++       +++|+++|+++|++++++.|+  .
T Consensus       222 vT~G~~Ga~~~~~~~~~~~~~~~v~vvDttGAGD~f~ag~i~~l~~g~~-------~~~al~~A~a~aa~~~~~~g~--~  292 (313)
T d2f02a1         222 ISLGKDGAIAKHHDQFYRVKIPTIQAKNPVGSGDATIAGLAYGLAKDAP-------AAELLKWGMAAGMANAQERMT--G  292 (313)
T ss_dssp             EECGGGCEEEEETTEEEEEECCCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHHSSSS--S
T ss_pred             EecccceEEEEeCCceEecccccCCCCCCcCHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhCCCCC--C
Confidence            9999999999999999999999999999999999999999999999999       999999999999999999996  5


Q ss_pred             CCCHHHHHHHHhcCcchhh
Q 029908          156 LPTESEALALLKRSTIIDK  174 (185)
Q Consensus       156 ~~~~~~i~~~~~~~~~~~~  174 (185)
                      .|+.+++++++++++++|.
T Consensus       293 ~~~~e~~~~~~~~~~~~~~  311 (313)
T d2f02a1         293 HVDVENVKKHLMNIQVVEI  311 (313)
T ss_dssp             CCCHHHHHHHHTTCEEEEC
T ss_pred             CCCHHHHHHHHhcCceEEc
Confidence            6899999999999988764

>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=9.5e-26  Score=177.35  Aligned_cols=150  Identities=31%  Similarity=0.481  Sum_probs=129.5

Q ss_pred             HHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHH----HhcCCCCcEEEEEcC
Q 029908            4 AKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL----SLWHPNLKLLLVTLG   79 (185)
Q Consensus         4 a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~----~l~~~g~~~vvit~G   79 (185)
                      ..+.+.....+|.....          ...++++++|++++|.+|+..+++.......+..    .+...+.+.+++|.|
T Consensus       153 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~d~~~~n~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vivt~G  222 (306)
T d1rkda_         153 AHQNKTIVALNPAPARE----------LPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLG  222 (306)
T ss_dssp             HHHTTCEEEECCCSCCC----------CCHHHHTTCSEECCCHHHHHHHHSCCCSSHHHHHHHHHHHHHTTCSEEEEECG
T ss_pred             hhhcccccccCchhhhh----------hHHHHHhhcccccCCHHHHHHHhCCCcccchhHHHHHHHHhhcCCcEEEEecC
Confidence            34566677777754332          2345788999999999999999988876543321    445689999999999


Q ss_pred             CCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCH
Q 029908           80 EHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTE  159 (185)
Q Consensus        80 ~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~  159 (185)
                      +.|+.++++++.+++|+++++++|++||||+|+|||+++|++|.+       +++|+++|+++|+++|++.|+.+++|++
T Consensus       223 ~~g~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~Ag~l~~l~~g~~-------~~~a~~~a~~~aa~~v~~~G~~~~~p~~  295 (306)
T d1rkda_         223 SRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALLEEKP-------LPEAIRFAHAAAAIAVTRKGAQPSVPWR  295 (306)
T ss_dssp             GGCEEEEETTEEEEECCCCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHTSSSSGGGCCCH
T ss_pred             CceEEEeecCceEEeCCccCccccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhCCCCCCCCCCCH
Confidence            999999999999999999999999999999999999999999999       9999999999999999999999899999


Q ss_pred             HHHHHHHhcCc
Q 029908          160 SEALALLKRST  170 (185)
Q Consensus       160 ~~i~~~~~~~~  170 (185)
                      +||++++++++
T Consensus       296 ~ev~~~l~~~~  306 (306)
T d1rkda_         296 EEIDAFLDRQR  306 (306)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHhcC
Confidence            99999998764

>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Aminoimidazole riboside kinase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.93  E-value=5.4e-26  Score=179.22  Aligned_cols=163  Identities=36%  Similarity=0.476  Sum_probs=142.8

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEH   81 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~~   81 (185)
                      ++++++++++++|++.+...|.........+.+.+...+....+.............. .....+.+.|++.+++|.|++
T Consensus       142 ~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~g~~~vivt~G~~  220 (304)
T d1tyya_         142 RRMREAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQ-DARYYLRDLGCDTTIISLGAD  220 (304)
T ss_dssp             HHHHHTTCEEEEECCCCGGGCSCGGGHHHHHHHHHHHCSEEEEEHHHHHHHHCCSSGG-GGSSTTGGGTCSCEEEECGGG
T ss_pred             HHhhhcCceEeeccccccccccchhhhhhhhhhcccccccccccccccccccccchHH-HHHHHHHhcccceeeeecccc
Confidence            5678899999999999988888777888888888999999999999888776655432 122244568999999999999


Q ss_pred             ceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHHH
Q 029908           82 GCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESE  161 (185)
Q Consensus        82 G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~~  161 (185)
                      |++++++++.+++|+++++++|++||||+|+|||+++|++|.+  .++.++.+|+++|+++|+.+|++.|+.+++|+.+|
T Consensus       221 Ga~~~~~~~~~~~p~~~v~vvdt~GAGDaf~ag~~~~l~~g~~--~~~~~l~~al~~a~~~As~~v~~~G~~~~~P~~~e  298 (304)
T d1tyya_         221 GALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTLSRANC--WDHALLAEAISNANACGAMAVTAKGAMTALPFPDQ  298 (304)
T ss_dssp             CEEEESSSCEEEECCCCCCCSCCTTHHHHHHHHHHHHHTTSSS--CCHHHHHHHHHHHHHHHHHGGGSSSTTTTCCCHHH
T ss_pred             eeeeeccCCccccCcccccCCCCCCchHHHHHHHHHHHHhCCC--ccchHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHH
Confidence            9999999999999999999999999999999999999999976  35566899999999999999999999999999999


Q ss_pred             HHHHHh
Q 029908          162 ALALLK  167 (185)
Q Consensus       162 i~~~~~  167 (185)
                      |+++++
T Consensus       299 v~~~l~  304 (304)
T d1tyya_         299 LNTFLS  304 (304)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            999873

>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Fructose 1-phosphate kinase FruB
species: Bacillus halodurans [TaxId: 86665]

Probab=99.93  E-value=9.8e-26  Score=179.38  Aligned_cols=147  Identities=24%  Similarity=0.267  Sum_probs=128.9

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~~vvit   77 (185)
                      +.+++++.++++|++.           +.........++++++|..|+..+.+....+.+..    +++.+.+++.++||
T Consensus       149 ~~a~~~~~~~~~d~~~-----------~~~~~~~~~~~~~l~~n~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvit  217 (306)
T d2abqa1         149 QIAKERGAFVAVDTSG-----------EALHEVLAAKPSFIKPNHHELSELVSKPIASIEDAIPHVQRLIGEGIESILVS  217 (306)
T ss_dssp             HHHHTTTCEEEEECCH-----------HHHHHHGGGCCSEECCBHHHHHHHHTSCCCSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHcCCceeccchh-----------hHHHHHhhhcceeecccccccccccccccccccchhhcccccccccccceeee
Confidence            4678899999999872           23345667899999999999999999876655332    36667899999999


Q ss_pred             cCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCC
Q 029908           78 LGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALP  157 (185)
Q Consensus        78 ~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~  157 (185)
                      +|++|++++++++.+++|+++++++|++||||+|+|||+++|++|++       +++|+++|+++|++++++.|.    |
T Consensus       218 ~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~-------~~~al~~a~a~aa~~~~~~G~----~  286 (306)
T d2abqa1         218 FAGDGALFASAEGMFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKS-------LEDAVPFAVAAGSATAFSDGF----C  286 (306)
T ss_dssp             CGGGCEEEEETTEEEEECCCCCCCCCCSSHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHHSSSC----C
T ss_pred             ecccCcccccccccccccccCCccCCCCcHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCCC----C
Confidence            99999999999999999999999999999999999999999999999       999999999999999999883    6


Q ss_pred             CHHHHHHHHhcCc
Q 029908          158 TESEALALLKRST  170 (185)
Q Consensus       158 ~~~~i~~~~~~~~  170 (185)
                      +++++++++++.+
T Consensus       287 ~~~~v~~~~~~~~  299 (306)
T d2abqa1         287 TREEVERLQQQLQ  299 (306)
T ss_dssp             CHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHH
Confidence            8999999988744

>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Hypothetical fructokinase ST2478
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.92  E-value=1.6e-24  Score=171.28  Aligned_cols=157  Identities=24%  Similarity=0.402  Sum_probs=132.0

Q ss_pred             HHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhc--cccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEEcCC
Q 029908            3 AAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWD--KAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGE   80 (185)
Q Consensus         3 ~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit~G~   80 (185)
                      .+.+.+....+|.+.+...|.... ......+.+.  ..+.+.+|.++...+.+....  +.+.+++..+++.|++|+|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~vvvt~G~  226 (308)
T d2dcna1         150 KAFEIASNRSFDTNIRLKLWSAEE-AKREILKLLSKFHLKFLITDTDDSKIILGESDP--DKAAKAFSDYAEIIVMKLGP  226 (308)
T ss_dssp             HHHHHCSSEEEECCCCTTTSCHHH-HHHHHHHHHHHCCEEEEEEEHHHHHHHHSCCCH--HHHHHHHTTTEEEEEEEEET
T ss_pred             HHHhhccccccccceeccccchhh-hhhhhhhhccccccccccchhhhhhhhcchhhh--hhhhhhcccceeEEeecccc
Confidence            345567778899988877776332 3333333333  457788999999998866543  44556777899999999999


Q ss_pred             CceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCCHH
Q 029908           81 HGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTES  160 (185)
Q Consensus        81 ~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~~~  160 (185)
                      +|+++++++..+++|+++++++|++||||+|+|||+++|++|.+       +.+++++|+++|++++++.|+.+++|+.+
T Consensus       227 ~G~~~~~~~~~~~~~~~~v~vvDt~GAGDaf~ag~i~~l~~g~~-------~~~a~~~a~~~aa~~~~~~G~~~~~p~~~  299 (308)
T d2dcna1         227 KGAIVYYDGKKYYSSGYQVPVEDVTGAGDALGGTFLSLYYKGFE-------MEKALDYAIVASTLNVMIRGDQENLPTTK  299 (308)
T ss_dssp             TEEEEEETTEEEEEECCCCCCSCCTTHHHHHHHHHHHHHTTTCC-------HHHHHHHHHHHHHHHTTSSSSSTTCCCHH
T ss_pred             CceeeecCCcccccccceeeecCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhCcCCCCcCCCCHH
Confidence            99999999999999999999999999999999999999999999       99999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 029908          161 EALALLKRS  169 (185)
Q Consensus       161 ~i~~~~~~~  169 (185)
                      +++++++++
T Consensus       300 ~~~~~l~~~  308 (308)
T d2dcna1         300 DIETFLREM  308 (308)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhhC
Confidence            999999874

>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Putative sugar kinase TM0828
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=4.1e-25  Score=177.78  Aligned_cols=153  Identities=18%  Similarity=0.188  Sum_probs=125.5

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcC-HHHHhHhhCCCCCCHHHHH----HhcCCCCcEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVS-DVELEFLTGSDKIDDESAL----SLWHPNLKLLLV   76 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n-~~E~~~l~~~~~~~~~~~~----~l~~~g~~~vvi   76 (185)
                      +.++++|++|++|++        + ...+.+.+....++++++| ++|++.+++.+..+.++..    .+.+.+ +.+||
T Consensus       158 ~~a~~~~~~v~~D~s--------~-~~~~~~~~~~~~~~~ikpn~~~e~~~l~g~~~~~~~d~~~~~~~l~~~~-~~vvv  227 (319)
T d2ajra1         158 RLARERGVFVFVEQT--------P-RLLERIYEGPEFPNVVKPDLRGNHASFLGVDLKTFDDYVKLAEKLAEKS-QVSVV  227 (319)
T ss_dssp             HHHHHTTCEEEEECC--------H-HHHHHHHHSSCCCSEECCCCTTCCSCBTTBCCCSHHHHHHHHHHHHHHS-SEEEE
T ss_pred             HHHHhcCCcccccch--------h-hHHHHHhhhcccCcEEeeccHHHHHHHHhhccCCHHHHHHHHhhhhhhc-ceeee
Confidence            568899999999985        2 2334455667788999998 5688888888766655543    444454 57789


Q ss_pred             EcCCCceEEEEcCceeEe-cCcccccccCCCcchHHHHHHHHHHH-ccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCC
Q 029908           77 TLGEHGCRYYTKSFKGAV-DAFRVKTVDTTGAGDAFVGALLCKIV-DDQSAIEDEPRLREILKFANACGALSTTKKGAIP  154 (185)
Q Consensus        77 t~G~~G~~~~~~~~~~~~-~~~~~~~~d~~GaGDaf~A~~~~~l~-~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~  154 (185)
                      |.|.+|+.++++++.++. ++++++++|++||||+|+|||+++++ +|.+       +++|+++|+++|+.++++.|+  
T Consensus       228 t~G~~G~~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~i~~~l~~g~~-------~~~a~~~a~a~aa~~~~~~g~--  298 (319)
T d2ajra1         228 SYEVKNDIVATREGVWLIRSKEEIDTSHLLGAGDAYVAGMVYYFIKHGAN-------FLEMAKFGFASALAATRRKEK--  298 (319)
T ss_dssp             EETTTEEEEECSSCEEEEEESSCCCGGGCTTHHHHHHHHHHHHHHHHCSC-------HHHHHHHHHHHHHHHTTSSSC--
T ss_pred             ecccceeeeeccCCceEecccccCCCCCCCChHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHhCCCCC--
Confidence            999999999887765554 56678999999999999999999987 5899       999999999999999999995  


Q ss_pred             CCCCHHHHHHHHhcCcchh
Q 029908          155 ALPTESEALALLKRSTIID  173 (185)
Q Consensus       155 ~~~~~~~i~~~~~~~~~~~  173 (185)
                      .+|++++++++++++++++
T Consensus       299 ~~~~~~~~~~~~~~~~i~~  317 (319)
T d2ajra1         299 YMPDLEAIKKEYDHFTVER  317 (319)
T ss_dssp             CCCCHHHHHTTGGGEEEEE
T ss_pred             CCCCHHHHHHHHhcCcEEE
Confidence            5799999999999988765

>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1e-24  Score=172.46  Aligned_cols=150  Identities=29%  Similarity=0.406  Sum_probs=128.4

Q ss_pred             HHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCC---CCCHHHH-HHhcCCCCcEEEEEc
Q 029908            3 AAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSD---KIDDESA-LSLWHPNLKLLLVTL   78 (185)
Q Consensus         3 ~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~---~~~~~~~-~~l~~~g~~~vvit~   78 (185)
                      .+.+.+.++++|+......+          ..+++.+|++++|.+|+.......   ..+.+.. ..+...+++.+++|.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvvt~  215 (299)
T d1vm7a_         146 CAKRFNGIVIFDPAPAQGIN----------EEIFQYLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIVKL  215 (299)
T ss_dssp             HHHHCCSEEEECCCSCTTCC----------GGGGGGCSEECCBHHHHHHHHHHHHSCCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred             hhhhcCceEEEecCcchhhh----------HHHHhhcccccccHHHHHhhhccccccchhhhhhhhhhhcCCCcEEEEeC
Confidence            45678999999997654332          345789999999999988765332   2222222 356678999999999


Q ss_pred             CCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCCCC
Q 029908           79 GEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPT  158 (185)
Q Consensus        79 G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~~~  158 (185)
                      |+.|++++++++.+++|+++++++|++||||+|+|||+++|++|.+       +++|+++|+++|+++|++.|+.+++|+
T Consensus       216 G~~g~~~~~~~~~~~~~~~~~~vvDttGAGDaf~Ag~i~~l~~g~~-------~~~al~~a~~~aa~~~~~~G~~~~~p~  288 (299)
T d1vm7a_         216 GDKGVLLVNKNEKKHFPTFKVKAVDTTAAGDVFNGAFAVALSEGKN-------PEEAVIFGTAAAAISVTRLGAQSSIPA  288 (299)
T ss_dssp             GGGCEEEEETTEEEEECCCCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHTTSSSSGGGCCC
T ss_pred             CCCceEEEeccceEEEeeeeeeeECCCCccHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhCcCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999       999999999999999999999999999


Q ss_pred             HHHHHHHHhcC
Q 029908          159 ESEALALLKRS  169 (185)
Q Consensus       159 ~~~i~~~~~~~  169 (185)
                      ++||++++++.
T Consensus       289 ~~ei~~~lk~~  299 (299)
T d1vm7a_         289 REEVEAFLKNL  299 (299)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhcC
Confidence            99999999763

>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.1e-24  Score=167.59  Aligned_cols=149  Identities=28%  Similarity=0.410  Sum_probs=124.1

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~~vvit   77 (185)
                      +.+++.+.++++|+..+...+.         .......+++..+..|..........+....    ..+++.+++.+++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivT  221 (308)
T d2fv7a1         151 TMARRSGVKTLFNPAPAIADLD---------PQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIIT  221 (308)
T ss_dssp             HHHHHTTCEEEECCCSCCTTCC---------THHHHTCSEEEEEHHHHHHHHSSCCCSHHHHHHHHHHHHTTTCSEEEEE
T ss_pred             HHhhhcCceEEecccchhhhhh---------hhHHhhhhhhhhhHHHHHHhhhhhccchhhhhhHHHHHHhcCCCEEEEE
Confidence            4677899999999987765554         2233467889999998887776665543322    26677899999999


Q ss_pred             cCCCceEEEEcC--ceeEecCcccccccCCCcchHHHHHHHHHH--HccCCCCCChHHHHHHHHHHHHHhHHHhhccCCC
Q 029908           78 LGEHGCRYYTKS--FKGAVDAFRVKTVDTTGAGDAFVGALLCKI--VDDQSAIEDEPRLREILKFANACGALSTTKKGAI  153 (185)
Q Consensus        78 ~G~~G~~~~~~~--~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l--~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~  153 (185)
                      +|++|+++++++  ..+++|+++++++|++||||+|+|+|++++  .+|.+       +++|+++|+++|+++|++.|++
T Consensus       222 ~G~~G~~~~~~~~~~~~~~p~~~v~vvDttGAGDaF~ag~~~~l~~~~~~~-------~~~a~~~a~~~aa~~v~~~G~~  294 (308)
T d2fv7a1         222 LGAEGCVVLSQTEPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLAYYPNLS-------LEDMLNRSNFIAAVSVQAAGTQ  294 (308)
T ss_dssp             CGGGCEEEEESSCCSCEEECCCCCCCSCCTTHHHHHHHHHHHHHHHCTTSC-------HHHHHHHHHHHHHHHHTSSSGG
T ss_pred             ecccceeeecccccceeecccccccccCCCChhHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999854  578899999999999999999999999987  58888       9999999999999999999999


Q ss_pred             CCCCCHHHHHHHH
Q 029908          154 PALPTESEALALL  166 (185)
Q Consensus       154 ~~~~~~~~i~~~~  166 (185)
                      +++|+++||+++|
T Consensus       295 ~~~p~~~ei~~~l  307 (308)
T d2fv7a1         295 SSYPYKKDLPLTL  307 (308)
T ss_dssp             GGCCCGGGSCGGG
T ss_pred             CCCCCHHHHHHhh
Confidence            8899999998764

>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Adenosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.4e-23  Score=167.42  Aligned_cols=146  Identities=20%  Similarity=0.327  Sum_probs=115.1

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCC---CHHHHH-------HhcCCCC
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI---DDESAL-------SLWHPNL   71 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~---~~~~~~-------~l~~~g~   71 (185)
                      +.+++.+.++++|+...    ...+..+..+.++++++|++++|++|+..+++....   +.+.+.       .+...+.
T Consensus       181 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~dil~~Ne~Ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (342)
T d1bx4a_         181 HHASENNRIFTLNLSAP----FISQFYKESLMKVMPYVDILFGNETEAATFAREQGFETKDIKEIAKKTQALPKMNSKRQ  256 (342)
T ss_dssp             HHHHHTTCEEEEECCSH----HHHHHTHHHHHHHGGGCSEEEEEHHHHHHHHHHTTCCCCCHHHHHHHHHTSCCSCTTSC
T ss_pred             HHhhhccceeecccccc----cchhccccchhhhhccccEEeecHHHHHHhhCcCCcccchhhhhHHHHHHHHhhcccCc
Confidence            45677889999997531    012344667788999999999999999999876532   222221       2234678


Q ss_pred             cEEEEEcCCCceEEEEcCceeEecCc---ccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhh
Q 029908           72 KLLLVTLGEHGCRYYTKSFKGAVDAF---RVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTT  148 (185)
Q Consensus        72 ~~vvit~G~~G~~~~~~~~~~~~~~~---~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~  148 (185)
                      +.+++|+|.+|++++++++..+++++   ..+++|++||||+|+|||+++|++|++       +++|+++|+++|+.+|+
T Consensus       257 ~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~l~~g~~-------~~~a~~~a~~~Aa~~v~  329 (342)
T d1bx4a_         257 RIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGAGDAFVGGFLSQLVSDKP-------LTECIRAGHYAASIIIR  329 (342)
T ss_dssp             CEEEEEETTEEEEEECSSCEEEECCCCCCCTTCCCHHHHHHHHHHHHHHHHTTTCC-------HHHHHHHHHHHHHHHTT
T ss_pred             eEEEEEcccceEEEEeCCceEEEecCCCCCCCccCCCcHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHc
Confidence            88999999999999998876665544   347899999999999999999999999       99999999999999999


Q ss_pred             ccCCC-CCCCC
Q 029908          149 KKGAI-PALPT  158 (185)
Q Consensus       149 ~~g~~-~~~~~  158 (185)
                      +.|++ |.+|+
T Consensus       330 ~~Ga~~p~~~d  340 (342)
T d1bx4a_         330 RTGCTFPEKPD  340 (342)
T ss_dssp             SSSSCCCSSCC
T ss_pred             CcCCCCCCCCC
Confidence            99985 44443

>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Adenosine kinase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.84  E-value=4.3e-21  Score=154.37  Aligned_cols=140  Identities=22%  Similarity=0.293  Sum_probs=105.5

Q ss_pred             HHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCC-----------HHH-------HHH
Q 029908            4 AKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKID-----------DES-------ALS   65 (185)
Q Consensus         4 a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~-----------~~~-------~~~   65 (185)
                      ++.++.++.+|++...    ..+.......++++++|++++|++|+..|.+.....           .+.       ..+
T Consensus       177 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~di~~~N~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (350)
T d2absa1         177 HGIPNAIFTLNLSAPF----CVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKTALSTANKEHAVEVCTGALR  252 (350)
T ss_dssp             HTSTTCEEEEECCCHH----HHHHCHHHHHHHHHTCSEEEEEHHHHHHHHHHHTCC----------CHHHHHHHHHHHHH
T ss_pred             hhhccceEEEecchhh----hhhhhhcchhhhcccCCEEEecHHHHHHHhCCCCchhhHHHHhhhcchhhHHHHHHHHHH
Confidence            4457788999986311    022335667778999999999999999987643211           000       011


Q ss_pred             h-----cCCCCcEEEEEcCCCceEEEEcCc-----eeEecCc--cc-ccccCCCcchHHHHHHHHHHHccCCCCCChHHH
Q 029908           66 L-----WHPNLKLLLVTLGEHGCRYYTKSF-----KGAVDAF--RV-KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRL  132 (185)
Q Consensus        66 l-----~~~g~~~vvit~G~~G~~~~~~~~-----~~~~~~~--~~-~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~  132 (185)
                      +     ...+++.+|+|+|++|+++++++.     ..+++.+  +. +++|++||||+|+|||+++|++|++       +
T Consensus       253 ~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~g~~~~~~~~~p~~~~~~VVDttGAGDaF~ag~l~~ll~g~~-------~  325 (350)
T d2absa1         253 LLTAGQNTSATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKT-------V  325 (350)
T ss_dssp             HHHTTCCCSSCCEEEEECTTSCEEEEEECTTSCEEEEEECCCCCCGGGCCCCTTHHHHHHHHHHHHHHTTCC-------H
T ss_pred             HHHhhhhccCccEEEEECCCCCceeecCCCCcceeeeecccccCCCCCccCCCcHHHHHHHHHHHHHHCCCC-------H
Confidence            1     125788999999999999988652     2334333  33 6899999999999999999999999       9


Q ss_pred             HHHHHHHHHHhHHHhhccCCCC
Q 029908          133 REILKFANACGALSTTKKGAIP  154 (185)
Q Consensus       133 ~~a~~~a~~~aa~~~~~~g~~~  154 (185)
                      ++|+++|+.+|+.+|++.|++.
T Consensus       326 ~~al~~a~~~Aa~~v~~~Ga~l  347 (350)
T d2absa1         326 KQCIMCGNACAQDVIQHVGFSL  347 (350)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCCC
T ss_pred             HHHHHHHHHHHHHHhcccCCCC
Confidence            9999999999999999999874

>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Hypothetical protein TM0415
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=4.9e-21  Score=150.00  Aligned_cols=148  Identities=20%  Similarity=0.142  Sum_probs=109.5

Q ss_pred             hHHHHcCCeEEEcCCCCC----CCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHHHhcCCCCcEEEEE
Q 029908            2 KAAKEAGALLSYDPNLRL----PLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVT   77 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~----~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~~l~~~g~~~vvit   77 (185)
                      +.+++.++++++|++...    ..+. .....+.+.++++++|++++|++|+..+.+..... +....+...+.. ++++
T Consensus       134 ~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~i~~N~~E~~~l~~~~~~~-~~~~~~~~~~~~-~v~~  210 (288)
T d1vk4a_         134 PVLRRKVMFLSADAQGFVRVPENEKL-VYRDWEMKEKYLKYLDLFKVDSREAETLTGTNDLR-ESCRIIRSFGAK-IILA  210 (288)
T ss_dssp             HHHHHHCSEEEEETHHHHEEEETTEE-EECCCTTHHHHGGGCSEEEEEHHHHHHHHSCSCHH-HHHHHHHHTTCS-SEEE
T ss_pred             HHHHHhCcceeecccccccccccccc-ccccHHHHHHHHHhCCcccCCHHHHHHHhhhhhHH-HHHhhhhcccce-eeec
Confidence            456788999999984211    0000 11123346778999999999999999998876532 222233344544 4555


Q ss_pred             cCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHH-ccCCCCCChHHHHHHHHHHHHHhHHHhhccCCCCCC
Q 029908           78 LGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV-DDQSAIEDEPRLREILKFANACGALSTTKKGAIPAL  156 (185)
Q Consensus        78 ~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~-~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~g~~~~~  156 (185)
                      .|..|+.+ ..+..++.+.++++++|++||||+|+|||+++++ +|.+       +++++++|+++|+.++++.|+    
T Consensus       211 ~g~~~~~~-~~~~~~~~~~~~~~vvDttGAGDsF~ag~i~~~l~~g~~-------~~~a~~~A~~~Aa~~v~~~Gp----  278 (288)
T d1vk4a_         211 THASGVIV-FDGNFYEASFRSWSLEGRTGRGDTCTAAFLVGFVFKKMS-------IEKATKFAAAVTSVKMRHPGP----  278 (288)
T ss_dssp             EETTEEEE-ESSSEEEEECCCSSGGGGTTHHHHHHHHHHHHHHTSCCC-------HHHHHHHHHHHHHHHTTSSSS----
T ss_pred             cccceeec-cccccccccCCCCccCCCCCHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHhCcCCC----
Confidence            56666655 4667888899999999999999999999999976 6888       999999999999999999995    


Q ss_pred             CCHHHHHH
Q 029908          157 PTESEALA  164 (185)
Q Consensus       157 ~~~~~i~~  164 (185)
                      ++++|+++
T Consensus       279 ~~~~~~~~  286 (288)
T d1vk4a_         279 LRREDLEA  286 (288)
T ss_dssp             CCGGGGGG
T ss_pred             CCHHHHHh
Confidence            46777765

>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: PfkB-like kinase
domain: Pyridoxamine kinase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3e-18  Score=135.61  Aligned_cols=136  Identities=21%  Similarity=0.164  Sum_probs=106.7

Q ss_pred             cCCeEEEcCCCCC--C-CCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHH----HhcCCCCcEEEEEcC
Q 029908            7 AGALLSYDPNLRL--P-LWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL----SLWHPNLKLLLVTLG   79 (185)
Q Consensus         7 ~g~~v~~D~~~~~--~-~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~----~l~~~g~~~vvit~G   79 (185)
                      .+.++++||....  . ....++.....+.+++|++|+|+||..|++.|+|.+..+.+++.    +|.+.|++.|++|.+
T Consensus       105 p~~~~v~DPVm~d~~~~~~~~~~~~~~~~~~Llp~adiitPN~~Ea~~L~g~~i~~~~~~~~aa~~L~~~g~~~Vvvt~~  184 (288)
T d1vi9a_         105 PQAKYFCDPVMGHPEKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLVKHL  184 (288)
T ss_dssp             TTCEEEECCCCEETTTEECSCTTHHHHHHHTHHHHCSEECCCHHHHHHHHTSCCCSHHHHHHHHHHHHHTSCSEEEECCC
T ss_pred             CCccEEEcceeecCCCCcCCChHHHHHHHHHhcccCCEEecCHHHHHHhhccccchhHHHHHHHHHHHhcCCCEEEEEec
Confidence            4789999997642  1 22234566677788999999999999999999999877665543    677899999999976


Q ss_pred             CCc--------eEEEEcCceeEecCc--ccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhc
Q 029908           80 EHG--------CRYYTKSFKGAVDAF--RVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTK  149 (185)
Q Consensus        80 ~~G--------~~~~~~~~~~~~~~~--~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~  149 (185)
                      ..|        ..++++++.+++..|  +....+++|+||+|+|+|+++|++|.+       +++|+++|.+.....++.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~GtGD~fsa~l~a~l~~G~~-------l~~A~~~A~~~v~~~l~~  257 (288)
T d1vi9a_         185 ARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGAT-------LQEALEHVTAAVYEIMVT  257 (288)
T ss_dssp             GGGSSSTTEEEEEEECSSCEEEEEEECCCCTTCCCSCHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHHH
T ss_pred             CccccccCceeEEEEeCCceEEecccccccCCCCCCChhHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHh
Confidence            543        356666666665444  446789999999999999999999999       999999999876666543

>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Thiamin biosynthesis kinases
domain: 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD)
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=3.7e-16  Score=121.60  Aligned_cols=137  Identities=20%  Similarity=0.117  Sum_probs=108.7

Q ss_pred             HcCCeEEEcCCCCCCC---CCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHH----HHhcCCCCcEEEEEc
Q 029908            6 EAGALLSYDPNLRLPL---WPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA----LSLWHPNLKLLLVTL   78 (185)
Q Consensus         6 ~~g~~v~~D~~~~~~~---~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~----~~l~~~g~~~vvit~   78 (185)
                      ....++++||......   ....+.....+.+++|.+|+|+||..|++.|++....+.+++    ++|.+.|++.|++|.
T Consensus        95 ~~~~~~v~dpv~~~~~~~~~~~~~~~~~~~~~Llp~adiiTPN~~Ea~~L~g~~~~~~~d~~~aa~~L~~~g~~~Vlitg  174 (258)
T d1ub0a_          95 FGVRPLVVDPVMVAKSGDPLLAKEAAAALKERLFPLADLVTPNRLEAEALLGRPIRTLKEAEEAAKALLALGPKAVLLKG  174 (258)
T ss_dssp             TTCCSEEECCCC---------CHHHHHHHHHHTGGGCSEECCBHHHHHHHHCSCCCSHHHHHHHHHHHHTTSCSCEEEEE
T ss_pred             hccccceEeeeeecccCccccchhHHHHHHHhhcccceeecCCHHHHhhhcCCCCCCHHHHHHHHHHHHHhCCCeEEEec
Confidence            3567899999765421   112456677777899999999999999999999887766544    377889999999998


Q ss_pred             CCCc-----eEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhc
Q 029908           79 GEHG-----CRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTK  149 (185)
Q Consensus        79 G~~G-----~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~  149 (185)
                      |...     ..+++++..+....++....+.+|+||+|.|+|++.|++|.+       +++|++.|.......+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtGd~~asaia~~La~G~~-------l~~Av~~A~~~v~~~i~~  243 (258)
T d1ub0a_         175 GHLEGEEAVDLLATRGGVLRFSAPRVHTRNTHGTGCTLSAAIAALLAKGRP-------LAEAVAEAKAYLTRALKT  243 (258)
T ss_dssp             EECC---EEEEEEETTEEEEEEECCCCCSCCTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccceeccCCeEEecccceecCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHh
Confidence            6432     345567777788888777888999999999999999999999       999999999988777654

>d1jxha_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Thiamin biosynthesis kinases
domain: 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD)
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.62  E-value=4.5e-15  Score=115.85  Aligned_cols=136  Identities=17%  Similarity=0.109  Sum_probs=100.7

Q ss_pred             cCCeEEEcCCCCCCC---CCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCC-CHHH----HHHhcCCCCcEEEEEc
Q 029908            7 AGALLSYDPNLRLPL---WPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI-DDES----ALSLWHPNLKLLLVTL   78 (185)
Q Consensus         7 ~g~~v~~D~~~~~~~---~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~-~~~~----~~~l~~~g~~~vvit~   78 (185)
                      ...++++||...+..   ....+.......+++|++|+|+||..|++.|++.... +.++    ++.+.+.|++.|++|.
T Consensus        98 ~~~~~vvdpv~~~~~~~~~~~~~~~~~~~~~Llp~adviTPN~~Ea~~Ll~~~~~~~~~~~~~aa~~l~~~g~~~Vlikg  177 (266)
T d1jxha_          98 HVRNVVLDTVMLAKSGDPLLSPSAIETLRVRLLPQVSLITPNLPEAAALLDAPHARTEQEMLAQGRALLAMGCEAVLMKG  177 (266)
T ss_dssp             TCCSEEEECCCC------CCCHHHHHHHHHHTGGGCSEEECBHHHHHHHHTCCCCCSHHHHHHHHHHHHHTTCSEEEEBC
T ss_pred             cCCceEEeccccccccchhhHHHHHHHHHHHhhhhhheecCCHHHHHHHhcCCcccChHHHHHHHHHHHhcCCceEEEec
Confidence            467899999765421   1224455555567999999999999999988776543 2222    2367779999999998


Q ss_pred             CCCc-----eEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhHHHhhc
Q 029908           79 GEHG-----CRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTK  149 (185)
Q Consensus        79 G~~G-----~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~  149 (185)
                      |...     .+++++++......++....+++|+||+|.|++++.|++|.+       +++|++.|.......++.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hGTGc~lasaiaa~La~G~~-------l~~Av~~A~~~v~~~i~~  246 (266)
T d1jxha_         178 GHLEDAQSPDWLFTREGEQRFSAPRVNTKNTHGTGCTLSAALAALRPRHRS-------WGETVNEAKAWLSAALAQ  246 (266)
T ss_dssp             ---------CEEECSSCEEEC---CCCCSCCBTHHHHHHHHHHHHGGGSSS-------HHHHHHHHHHHHHHHHTT
T ss_pred             cccCCCcceEEEEcCCceEEEeeccccCCCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHh
Confidence            7543     356677777777777777788899999999999999999999       999999999988888764

>d1lhpa_ c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: PfkB-like kinase
domain: Pyridoxal kinase
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=99.61  E-value=4.7e-15  Score=118.12  Aligned_cols=133  Identities=17%  Similarity=0.149  Sum_probs=94.7

Q ss_pred             cCCeEEEcCCCCC------CCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHHHHH----HhcCCCCcEEEE
Q 029908            7 AGALLSYDPNLRL------PLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL----SLWHPNLKLLLV   76 (185)
Q Consensus         7 ~g~~v~~D~~~~~------~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~~~~----~l~~~g~~~vvi   76 (185)
                      .+.++++||....      ..+.+++........++|.+|+|+||..|++.|+|.+..+.+++.    +|.+.|++.|+|
T Consensus       103 p~~~~v~DPVmgd~~~g~g~~~~~~~~~~~~~~~Llp~adiITPN~~Ea~~Ltg~~~~~~~~~~~aa~~L~~~g~~~Vvv  182 (309)
T d1lhpa_         103 PRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVI  182 (309)
T ss_dssp             TTCEEEECCCCSSCCCSSSCSCCCGGGHHHHHHTTGGGCSEECCCHHHHHHHHTCCCCSHHHHHHHHHHHHHHSCSEEEE
T ss_pred             CCCcEEEeccccccccccccccCCHHHHHHHHHhhcCcCcEEeccHHHHhHHhccccCCHHHHHHHHHHHHhcCCCEEEE
Confidence            4788999998743      234444444444456999999999999999999998876655443    566789999999


Q ss_pred             EcCCC------ceEEEEcC------------ceeEecCcccccccCCCcchHHHHHHHHHHHccC-CCCCChHHHHHHHH
Q 029908           77 TLGEH------GCRYYTKS------------FKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQ-SAIEDEPRLREILK  137 (185)
Q Consensus        77 t~G~~------G~~~~~~~------------~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~-~~~~~~~~~~~a~~  137 (185)
                      |.|..      +..+..+.            ..+.++.++++ .+++|+||+|+|+|++++++|. +       +++|++
T Consensus       183 Tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~GtGD~fsa~l~a~l~~g~~~-------L~~A~~  254 (309)
T d1lhpa_         183 TSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVD-AVFVGTGDLFAAMLLAWTHKHPNN-------LKVACE  254 (309)
T ss_dssp             CCCCCCCTTCTTEEEEEEEEEEC---CCCEEEEEEEEEECCS-SCCSSHHHHHHHHHHHHHHHSTTC-------HHHHHH
T ss_pred             EccccCCCCCCcEEEEeccceeeeccccceeeeEEEeecccC-CCCCcccHHHHHHHHHHHHhCCCC-------HHHHHH
Confidence            98742      22222111            11233444443 3679999999999999999874 7       999999


Q ss_pred             HHHHHhHHHh
Q 029908          138 FANACGALST  147 (185)
Q Consensus       138 ~a~~~aa~~~  147 (185)
                      .|.+.-...+
T Consensus       255 ~A~~~v~~~l  264 (309)
T d1lhpa_         255 KTVSAMHHVL  264 (309)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9987755443

>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Thiamin biosynthesis kinases
domain: Hydroxyethylthiazole kinase (THZ kinase, ThiK)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.92  E-value=6.9e-09  Score=80.20  Aligned_cols=128  Identities=16%  Similarity=0.035  Sum_probs=85.3

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhc--cccEEEcCHHHHhHhhCCCCC---------CHHH----HHHh
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWD--KAEVIKVSDVELEFLTGSDKI---------DDES----ALSL   66 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dii~~n~~E~~~l~~~~~~---------~~~~----~~~l   66 (185)
                      +.+++.++|+++||.....    .....+...++++  +.++|++|..|+..|.|....         ..++    ++++
T Consensus        82 ~~a~~~~~PvVLDPVgvga----s~~R~~~~~~ll~~~~~tVI~gN~~Ei~~L~g~~~~~~~gvd~~~~~~d~~~~A~~l  157 (269)
T d1ekqa_          82 KSANEHGVPVILDPVGAGA----TPFRTESARDIIREVRLAAIRGNAAEIAHTVGVTDWLIKGVDAGEGGGDIIRLAQQA  157 (269)
T ss_dssp             HHHHHTTCCEEEECTTBTT----BHHHHHHHHHHHHHSCCSEEEECHHHHHHHCC---------------HHHHHHHHHH
T ss_pred             HHHHHcCCCEEECCcCCCC----chhHHHHHHHHHHhCCCceEcCCHHHHHHHhCCccCCcCCcCCcccHHHHHHHHHHH
Confidence            5678899999999965321    2444556666665  569999999999999885421         1112    1233


Q ss_pred             cCCCCcEEEEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHH
Q 029908           67 WHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANAC  142 (185)
Q Consensus        67 ~~~g~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~~  142 (185)
                      .+.....|++| | ...++.+++..+.++.........+|+||.+.+.+.+.+.++.+       +.+++..|...
T Consensus       158 a~~~~~vVvlk-G-~~D~I~dg~~~~~~~~G~~~m~~itGtGc~Ls~~iaa~la~~~~-------~~~A~~~A~~~  224 (269)
T d1ekqa_         158 AQKLNTVIAIT-G-EVDVIADTSHVYTLHNGHKLLTKVTGAGCLLTSVVGAFCAVEEN-------PLFAAIAAISS  224 (269)
T ss_dssp             HHHHTSEEEEC-S-SSEEEECSSCEEEECCCCGGGGGSTTHHHHHHHHHHHHHTTCSS-------HHHHHHHHHHH
T ss_pred             HHhcCCEEEec-C-CceEEEeCCeeEEecCCChhhccCCcchHHHHHHHHHHHhCCCC-------HHHHHHHHHHH
Confidence            33333355555 4 34666777777777655444445589999999999999999988       88887777644

>d1v8aa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Thiamin biosynthesis kinases
domain: Hydroxyethylthiazole kinase (THZ kinase, ThiK)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.65  E-value=1.3e-07  Score=72.71  Aligned_cols=126  Identities=17%  Similarity=0.003  Sum_probs=77.6

Q ss_pred             hHHHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhh-ccccEEEcCHHHHhHhhCCCCC---------CHHHH----HHhc
Q 029908            2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIW-DKAEVIKVSDVELEFLTGSDKI---------DDESA----LSLW   67 (185)
Q Consensus         2 ~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l-~~~dii~~n~~E~~~l~~~~~~---------~~~~~----~~l~   67 (185)
                      +.|++.++|+++||.....    .....+...+++ .++++|++|..|+..|.|....         ..++.    +.+.
T Consensus        80 ~~A~~~~~PvVLDPVgvga----s~~R~~~~~~ll~~~~~vItgN~~Ei~~L~g~~~~~~gvd~~~~~~~d~~~~a~~lA  155 (264)
T d1v8aa_          80 EIANELGKPIVLDPVGAGA----TKFRTRVSLEILSRGVDVLKGNFGEISALLGEEGKTRGVDSLEYGEEEAKKLTMNAA  155 (264)
T ss_dssp             HHHHHHTCCEEEECTTBTT----BHHHHHHHHHHHHHCCSEEEEEHHHHHHHHHHHC----------CHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEcCcccCc----chhHHHHHHHHhccCCcEEcCCHHHHHHHhCcccCCCCCCcccccHHHHHHHHHHHH
Confidence            5678899999999965321    222333444433 3679999999999999865321         11221    2333


Q ss_pred             CCCCcEEEEEcCCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 029908           68 HPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANA  141 (185)
Q Consensus        68 ~~g~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~~  141 (185)
                      +..-..|++ .|. ..++.++++.+.++.........+|.||.+.+.+.+.+..+ +       ..+++..|..
T Consensus       156 ~~~~~vVvl-kG~-~D~I~dg~~~~~~~~G~~~m~~itGtGc~Ls~~iaa~la~~-~-------~~~Aa~~A~~  219 (264)
T d1v8aa_         156 REFNTTVAV-TGA-VDYVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFVAVT-E-------PLKATTSALV  219 (264)
T ss_dssp             HHTTSEEEE-ESS-SEEEECSSCEEEECCCCGGGGGSTTHHHHHHHHHHHHHTTS-C-------HHHHHHHHHH
T ss_pred             HHhCCEEEe-cCC-eeEEEcCCEEEEeCCCCchhccCCcccHHHHHHHHHHHhcC-C-------HHHHHHHHHH
Confidence            222224444 453 46667777777777655555556899999877777666666 4       4456555553

>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: YjeF C-terminal domain-like
domain: Hypothetical protein YxkO
species: Bacillus subtilis [TaxId: 1423]

Probab=98.49  E-value=7.7e-08  Score=74.51  Aligned_cols=144  Identities=15%  Similarity=0.080  Sum_probs=89.8

Q ss_pred             HHHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCHH-----HHHHhcCCCCcEEEEEc
Q 029908            4 AKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE-----SALSLWHPNLKLLLVTL   78 (185)
Q Consensus         4 a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~~-----~~~~l~~~g~~~vvit~   78 (185)
                      ..+.++|+++|...-...          .....+...+|+||.-|++.|++....+.+     .++++.+. ...+|+-.
T Consensus       117 l~~~~~p~VlDAdal~~~----------~~~~~~~~~IiTPH~gE~~rL~g~~~~~~~~~~~~~a~~~~~~-~~~~vllK  185 (275)
T d1kyha_         117 VLTADCPVILDAGALAKR----------TYPKREGPVILTPHPGEFFRMTGVPVNELQKKRAEYAKEWAAQ-LQTVIVLK  185 (275)
T ss_dssp             HTTSSSCEEECGGGCCSC----------CCCCCSSCEEECCCHHHHHHHHCCCHHHHTTSHHHHHHHHHHH-HTSEEEEC
T ss_pred             HhhccCceeehhhhhhhh----------hcccccCceEecccHHHHHHhcCcccchhhccHHHHHHHHHHH-hCCeEEec
Confidence            445788999998642211          012235678999999999999987643221     12233322 22355555


Q ss_pred             CCCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHH---HHhHHH-hhccCCCC
Q 029908           79 GEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFAN---ACGALS-TTKKGAIP  154 (185)
Q Consensus        79 G~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~---~~aa~~-~~~~g~~~  154 (185)
                      |.. .++.+.++..++.........+.|.||++++.++..++++.+       +.+|+..|+   ..|+.. ..+.|.. 
T Consensus       186 G~~-t~I~~~~g~~~~~~~g~~~lat~GsGDvLaGiIa~~lAq~~~-------~~~Aa~~a~~lh~~aa~~~~~~~~~~-  256 (275)
T d1kyha_         186 GNQ-TVIAFPDGDCWLNPTGNGALAKGGTGDTLTGMILGMLCCHED-------PKHAVLNAVYLHGACAELWTDEHSAH-  256 (275)
T ss_dssp             STT-CEEECTTSCEEECCCCCGGGCSTTHHHHHHHHHHHHHHHCSS-------HHHHHHHHHHHHHHHHHHHHHHSCGG-
T ss_pred             cCc-ceEEcCCCceeecCCCCccccCCccccHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence            643 444554444555555556678899999999999999999999       999999995   334433 3444432 


Q ss_pred             CCCCHHHHHHHHhc
Q 029908          155 ALPTESEALALLKR  168 (185)
Q Consensus       155 ~~~~~~~i~~~~~~  168 (185)
                      ++ ..+||.+.+.+
T Consensus       257 ~~-~asdi~~~ip~  269 (275)
T d1kyha_         257 TL-LAHELSDILPR  269 (275)
T ss_dssp             GC-CTHHHHHHHHH
T ss_pred             CC-CHHHHHHHHHH
Confidence            33 34555555443

>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: YjeF C-terminal domain-like
domain: Hypothetical protein TM0922, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.79  E-value=2.4e-05  Score=60.13  Aligned_cols=143  Identities=17%  Similarity=0.047  Sum_probs=84.0

Q ss_pred             HHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhCCCCCCH----HHHHHhcC-CCCcEEEEEcC
Q 029908            5 KEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD----ESALSLWH-PNLKLLLVTLG   79 (185)
Q Consensus         5 ~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~~~~~~~----~~~~~l~~-~g~~~vvit~G   79 (185)
                      ...+.++++|...-.       ...+....-.+...+++|+.-|++.|++....+.    +.++++.+ .++  +|+-.|
T Consensus       122 ~~~~~~~vldadal~-------~~~~~~l~~~~~~~IlTPH~gE~~rL~~~~~~~~~~~~~~a~~~a~~~~~--~vvlKG  192 (278)
T d2ax3a1         122 KTLEKPAVIDADAIN-------VLDTSVLKERKSPAVLTPHPGEMARLVKKTVGDVKYNYELAEEFAKENDC--VLVLKS  192 (278)
T ss_dssp             HHCCSCEEECHHHHH-------TCCHHHHHTCSSCEEECCCHHHHHHHHTCCHHHHTTCHHHHHHHHHHHTS--EEEECS
T ss_pred             hccchheecchhhhh-------hhhhhhhhhcCCCEEeCCCHhHHHHHhhcccchhhhHHHHHHHHHHHcCC--cEEecC
Confidence            456778888863210       0011111222456799999999999998763321    22222222 233  444444


Q ss_pred             CCceEEEEcCceeEecCcccccccCCCcchHHHHHHHHHHHccCCCCCChHHHHHHHHHHH---HHhHHHhhccCCCCCC
Q 029908           80 EHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFAN---ACGALSTTKKGAIPAL  156 (185)
Q Consensus        80 ~~G~~~~~~~~~~~~~~~~~~~~d~~GaGDaf~A~~~~~l~~g~~~~~~~~~~~~a~~~a~---~~aa~~~~~~g~~~~~  156 (185)
                      . ..++.+++..+..+. ......+.|.||++++.++.-++++.+       +.+++..|+   ..|+....+.+  .++
T Consensus       193 ~-~t~i~~~~~~~~~~~-g~~~la~~GtGDvLaGiIaallAq~~~-------~~~A~~~a~~lhg~aa~~a~~~~--~g~  261 (278)
T d2ax3a1         193 A-TTIVTDGEKTLFNIT-GNTGLSKGGSGDVLTGMIAGFIAQGLS-------PLEASTVSVYLHGFAAELFEQDE--RGL  261 (278)
T ss_dssp             S-SEEEECSSCEEEECC-CC-CCSSTTHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHHTCSSCG--GGC
T ss_pred             c-cccccCcccceeecC-CCCccccccchhHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHcCC--CCc
Confidence            3 344455555554443 445567899999999999999999999       999999885   33333333332  233


Q ss_pred             CCHHHHHHHHhc
Q 029908          157 PTESEALALLKR  168 (185)
Q Consensus       157 ~~~~~i~~~~~~  168 (185)
                       ...+|-+.+..
T Consensus       262 -~Asdi~~~ip~  272 (278)
T d2ax3a1         262 -TASELLRLIPE  272 (278)
T ss_dssp             -CHHHHHHHHHH
T ss_pred             -CHHHHHHHHHH
Confidence             56676665543

>d1u2xa_ c.72.1.3 (A:) ADP-specific phosphofructokinase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: ADP-specific Phosphofructokinase/Glucokinase
domain: ADP-specific phosphofructokinase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.58  E-value=0.22  Score=39.84  Aligned_cols=46  Identities=11%  Similarity=0.141  Sum_probs=36.9

Q ss_pred             HHcCCeEEEcCCCCCCCCCChHHHHHHHHHhhccccEEEcCHHHHhHhhC
Q 029908            5 KEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTG   54 (185)
Q Consensus         5 ~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~~   54 (185)
                      ++.+++|-|...+.    .+.+-....+..++|++|-+=+|+.|+..|..
T Consensus       251 ~~~~i~iHlElAs~----~d~~l~~~i~~~ilp~vDSlGmNEqEL~~l~~  296 (450)
T d1u2xa_         251 KEKDVKIHVEFASV----QDRKLRKKIITNILPFVDSVGIDEAEIAQILS  296 (450)
T ss_dssp             HHTTCEEEEECCCC----CCHHHHHHHHHHHGGGSSEEEEEHHHHHHHHH
T ss_pred             CCCCCeEEEEeccc----chHHHHHHHHHHhccccccCCCCHHHHHHHHH
Confidence            35688998988753    34667777888899999999999999987753