Citrus Sinensis ID: 029919

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
MASTTTPSISLQSNSSRTSFLSSPGPKCPKPFQITGLKLPFLSHSIKFTHVKSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMGG
cccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHcccccccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHcccccccEEcccc
ccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccEEEcHHHHHHHHHHHcccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEccccccHEEEEEEccccccccEEccc
mastttpsislqsnssrtsflsspgpkcpkpfqitglklpflshsikfthvkssvtdkynevvVDEEMDRIRRLqngsdvrgvalegekgrtvdltPSAVEAIAESFGEWVIRSLenergrpvedvkvslgkdprvsgpslSVAVFAGLARAGCLvfdmglattpacfmstllppfaydasimgg
mastttpsislqsnssrtsfLSSPGPKCPKPFQITGLKLPFLSHSIKFthvkssvtdkynevVVDEEMdrirrlqngsdvrgvalegekgrtvdltpsAVEAIAESFGEWVIrslenergrpvedvkvslgkdprvsgpSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMGG
MASTTTPSISLQSNSSRTSFLSSPGPKCPKPFQITGLKLPFLSHSIKFTHVKSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMGG
*******************************FQITGLKLPFLSHSIKFTHVKSSVTDKYNEVVVDEEMDRIRR********GVAL******TVDLTPSAVEAIAESFGEWVIRSL************************SLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDA*****
************************************LKLPFLSHSIK*********************DRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLE*****PVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMGG
*************************PKCPKPFQITGLKLPFLSHSIKFTHVKSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMGG
**************************KCPKPFQITGLKLPFLSHSIKFTHVKSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMGG
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooo
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MASTTTPSISLQSNSSRTSFLSSPGPKCPKPFQITGLKLPFLSHSIKFTHVKSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMGG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query185 2.2.26 [Sep-21-2011]
Q88C93 463 Phosphomannomutase/phosph yes no 0.340 0.136 0.354 0.0001
Q88BD4 465 Phosphomannomutase/phosph yes no 0.459 0.182 0.305 0.0002
P26276 463 Phosphomannomutase/phosph yes no 0.410 0.164 0.301 0.0003
B8DWH9 454 Phosphoglucosamine mutase yes no 0.464 0.189 0.343 0.0004
Q03VW4 455 Phosphoglucosamine mutase yes no 0.502 0.204 0.336 0.0004
Q9CID9 452 Phosphoglucosamine mutase yes no 0.416 0.170 0.347 0.0004
B0K5X4 447 Phosphoglucosamine mutase no no 0.508 0.210 0.351 0.0005
B0KD39 447 Phosphoglucosamine mutase no no 0.508 0.210 0.351 0.0005
B2A4R9 442 Phosphoglucosamine mutase yes no 0.421 0.176 0.371 0.0005
Q6AD28 453 Phosphoglucosamine mutase yes no 0.281 0.114 0.462 0.0008
>sp|Q88C93|ALGC_PSEPK Phosphomannomutase/phosphoglucomutase OS=Pseudomonas putida (strain KT2440) GN=algC PE=3 SV=1 Back     alignment and function desciption
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 16/79 (20%)

Query: 110 WVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPA 166
           W+ R++  +   +G P    +VS+G+D R+SGP L   +  GL  AGC V D+GL  TPA
Sbjct: 34  WIGRAIGAQSLAQGEP----QVSVGRDGRLSGPMLVEQLIKGLVDAGCNVSDVGLVPTPA 89

Query: 167 CFMSTLLPPFAYDASIMGG 185
            +         Y A+++ G
Sbjct: 90  LY---------YAANVLAG 99
The phosphomannomutase activity produces a precursor for alginate polymerization. The alginate layer causes a mucoid phenotype and provides a protective barrier against host immune defenses and antibiotics. Also involved in core-LPS biosynthesis due to its phosphoglucomutase activity. Essential for biofilm production.
Pseudomonas putida (strain KT2440) (taxid: 160488)
EC: 5EC: .EC: 4EC: .EC: 2EC: .EC: 8
>sp|Q88BD4|ALGC_PSESM Phosphomannomutase/phosphoglucomutase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=algC PE=3 SV=1 Back     alignment and function description
>sp|P26276|ALGC_PSEAE Phosphomannomutase/phosphoglucomutase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=algC PE=1 SV=4 Back     alignment and function description
>sp|B8DWH9|GLMM_BIFA0 Phosphoglucosamine mutase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=glmM PE=3 SV=1 Back     alignment and function description
>sp|Q03VW4|GLMM_LEUMM Phosphoglucosamine mutase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=glmM PE=3 SV=1 Back     alignment and function description
>sp|Q9CID9|GLMM_LACLA Phosphoglucosamine mutase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=glmM PE=3 SV=1 Back     alignment and function description
>sp|B0K5X4|GLMM_THEPX Phosphoglucosamine mutase OS=Thermoanaerobacter sp. (strain X514) GN=glmM PE=3 SV=1 Back     alignment and function description
>sp|B0KD39|GLMM_THEP3 Phosphoglucosamine mutase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=glmM PE=3 SV=1 Back     alignment and function description
>sp|B2A4R9|GLMM_NATTJ Phosphoglucosamine mutase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glmM PE=3 SV=1 Back     alignment and function description
>sp|Q6AD28|GLMM_LEIXX Phosphoglucosamine mutase OS=Leifsonia xyli subsp. xyli (strain CTCB07) GN=glmM PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query185
255573758 620 phosphoglucomutase, putative [Ricinus co 0.978 0.291 0.75 1e-68
225424281 617 PREDICTED: phosphomannomutase/phosphoglu 0.967 0.290 0.715 2e-65
356576034 619 PREDICTED: phosphomannomutase/phosphoglu 0.967 0.289 0.686 6e-64
357475239 621 Phosphoglucosamine mutase [Medicago trun 0.956 0.285 0.677 2e-60
224101859 554 predicted protein [Populus trichocarpa] 0.627 0.209 0.844 3e-51
297838899 615 hypothetical protein ARALYDRAFT_476213 [ 0.945 0.284 0.629 9e-51
15223252 615 phosphoglucomutase-like protein [Arabido 0.945 0.284 0.618 2e-50
449522169 575 PREDICTED: phosphomannomutase/phosphoglu 0.621 0.2 0.741 7e-44
449466867 616 PREDICTED: phosphomannomutase/phosphoglu 0.621 0.186 0.741 8e-44
414884874 618 TPA: hypothetical protein ZEAMMB73_59454 0.637 0.190 0.754 1e-43
>gi|255573758|ref|XP_002527800.1| phosphoglucomutase, putative [Ricinus communis] gi|223532835|gb|EEF34610.1| phosphoglucomutase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 138/184 (75%), Positives = 151/184 (82%), Gaps = 3/184 (1%)

Query: 1   MASTTTPSISLQSNSSRTSFLSSPGPKCPKPFQITGLKLPFLSHSI-KFTHVKSSVTDKY 59
           MA T T SISLQ+N   TSF S P     KPFQ   +K  F   ++ K T +KSS T KY
Sbjct: 1   MAHTATSSISLQNNVPNTSFKSPPSLPT-KPFQ-NNIKFSFPPLTLTKVTRIKSSRTTKY 58

Query: 60  NEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENER 119
           NEV+VDEEMD++RRLQNGSDVRGVALEGEKGRTVDLTP AVEAIAESFGEWVI  LE E+
Sbjct: 59  NEVIVDEEMDKVRRLQNGSDVRGVALEGEKGRTVDLTPPAVEAIAESFGEWVINGLEKEK 118

Query: 120 GRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYD 179
           GR VEDV+VSLGKDPRV+G SLSVAVFAGL+RAGC+VFDMGLATTPACFMSTLL PFAYD
Sbjct: 119 GRVVEDVRVSLGKDPRVTGASLSVAVFAGLSRAGCMVFDMGLATTPACFMSTLLHPFAYD 178

Query: 180 ASIM 183
           ASIM
Sbjct: 179 ASIM 182

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424281|ref|XP_002280911.1| PREDICTED: phosphomannomutase/phosphoglucomutase [Vitis vinifera] gi|297737677|emb|CBI26878.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356576034|ref|XP_003556140.1| PREDICTED: phosphomannomutase/phosphoglucomutase-like [Glycine max] Back     alignment and taxonomy information
>gi|357475239|ref|XP_003607905.1| Phosphoglucosamine mutase [Medicago truncatula] gi|355508960|gb|AES90102.1| Phosphoglucosamine mutase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224101859|ref|XP_002312448.1| predicted protein [Populus trichocarpa] gi|222852268|gb|EEE89815.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297838899|ref|XP_002887331.1| hypothetical protein ARALYDRAFT_476213 [Arabidopsis lyrata subsp. lyrata] gi|297333172|gb|EFH63590.1| hypothetical protein ARALYDRAFT_476213 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15223252|ref|NP_177239.1| phosphoglucomutase-like protein [Arabidopsis thaliana] gi|5902394|gb|AAD55496.1|AC008148_6 Putative phosphoglucomutase [Arabidopsis thaliana] gi|20260528|gb|AAM13162.1| putative phosphoglucomutase [Arabidopsis thaliana] gi|30725426|gb|AAP37735.1| At1g70820 [Arabidopsis thaliana] gi|332196999|gb|AEE35120.1| phosphoglucomutase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449522169|ref|XP_004168100.1| PREDICTED: phosphomannomutase/phosphoglucomutase-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449466867|ref|XP_004151147.1| PREDICTED: phosphomannomutase/phosphoglucomutase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|414884874|tpg|DAA60888.1| TPA: hypothetical protein ZEAMMB73_594547 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query185
TAIR|locus:2014025 615 AT1G70820 "AT1G70820" [Arabido 0.940 0.282 0.625 5.2e-49
UNIPROTKB|Q69TT2 625 OSJNBa0026P23.2-1 "Os06g047620 0.654 0.193 0.704 2.2e-39
UNIPROTKB|Q7XHZ2 543 P0475E07.126 "Putative phospho 0.524 0.178 0.44 1e-14
UNIPROTKB|A8J352 503 CHLREDRAFT_119219 "Predicted p 0.502 0.184 0.485 1.5e-14
UNIPROTKB|A6VEC9 868 algC "Phosphomannomutase AlgC" 0.589 0.125 0.279 0.0003
UNIPROTKB|Q603M2 463 MCA2782 "Phosphoglucomutase/ph 0.416 0.166 0.354 0.00041
UNIPROTKB|Q4K3S1 465 algC "Phosphomannomutase/phosp 0.4 0.159 0.320 0.00073
UNIPROTKB|Q88BD4 465 algC "Phosphomannomutase/phosp 0.416 0.165 0.320 0.00096
TAIR|locus:2014025 AT1G70820 "AT1G70820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 117/187 (62%), Positives = 135/187 (72%)

Query:     1 MASTTTPSISLQSNS-SRTSFLSS-PGPKCPKPFQITGLKLPFLSHSIKFTHVKSSVTDK 58
             MAST+T S+       S+T+  SS PG    + F    L     S S+K   ++SS   K
Sbjct:     1 MASTSTSSLMASKTVISKTALFSSLPGI-VSRSF----LTFAPASPSVKPLRIRSSNVTK 55

Query:    59 YNEVV--VDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLE 116
             ++EV   +DE+MD+IRRLQNGSDVRGVALEGEKGRTVDLTP+AVEAIAESFGEWV  +  
Sbjct:    56 FDEVTNSLDEDMDQIRRLQNGSDVRGVALEGEKGRTVDLTPAAVEAIAESFGEWVAATES 115

Query:   117 NERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPF 176
             N  G     +K+SLG+DPRVSG  LS AVFAGLARAGCL FDMGLATTPACFMSTLL PF
Sbjct:   116 NGNGV----IKISLGRDPRVSGGKLSTAVFAGLARAGCLAFDMGLATTPACFMSTLLSPF 171

Query:   177 AYDASIM 183
              YDASIM
Sbjct:   172 EYDASIM 178
GO:0004610 "phosphoacetylglucosamine mutase activity" evidence=IBA
GO:0005829 "cytosol" evidence=IBA
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0006048 "UDP-N-acetylglucosamine biosynthetic process" evidence=IBA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016868 "intramolecular transferase activity, phosphotransferases" evidence=IEA;ISS
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0042631 "cellular response to water deprivation" evidence=RCA
UNIPROTKB|Q69TT2 OSJNBa0026P23.2-1 "Os06g0476200 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XHZ2 P0475E07.126 "Putative phosphoglucomutase, chloroplast" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A8J352 CHLREDRAFT_119219 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|A6VEC9 algC "Phosphomannomutase AlgC" [Pseudomonas aeruginosa PA7 (taxid:381754)] Back     alignment and assigned GO terms
UNIPROTKB|Q603M2 MCA2782 "Phosphoglucomutase/phosphomannomutase family protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K3S1 algC "Phosphomannomutase/phosphoglucomutase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|Q88BD4 algC "Phosphomannomutase/phosphoglucomutase" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
PLN02371 583 PLN02371, PLN02371, phosphoglucosamine mutase fami 2e-65
cd03089 443 cd03089, PMM_PGM, The phosphomannomutase/phosphogl 8e-24
pfam02878138 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphoma 6e-17
TIGR03990 443 TIGR03990, Arch_GlmM, phosphoglucosamine mutase 8e-15
COG1109 464 COG1109, {ManB}, Phosphomannomutase [Carbohydrate 4e-12
cd03087 439 cd03087, PGM_like1, This archaeal PGM-like (phosph 5e-09
PRK14318 448 PRK14318, glmM, phosphoglucosamine mutase; Provisi 2e-08
cd05802 434 cd05802, GlmM, GlmM is a bacterial phosphoglucosam 2e-08
cd05803 445 cd05803, PGM_like4, This PGM-like (phosphoglucomut 3e-08
TIGR01455 443 TIGR01455, glmM, phosphoglucosamine mutase 4e-07
cd03086 513 cd03086, PGM3, PGM3 (phosphoglucomutase 3), also k 2e-05
PLN02895 562 PLN02895, PLN02895, phosphoacetylglucosamine mutas 3e-05
PRK14316 448 PRK14316, glmM, phosphoglucosamine mutase; Provisi 3e-05
PRK14322 429 PRK14322, glmM, phosphoglucosamine mutase; Provisi 1e-04
PRK14317 465 PRK14317, glmM, phosphoglucosamine mutase; Provisi 2e-04
PRK14321 449 PRK14321, glmM, phosphoglucosamine mutase; Provisi 2e-04
PRK14323 440 PRK14323, glmM, phosphoglucosamine mutase; Provisi 4e-04
PRK14319 430 PRK14319, glmM, phosphoglucosamine mutase; Provisi 6e-04
cd03088 459 cd03088, ManB, ManB is a bacterial phosphomannomut 0.002
PRK09542 445 PRK09542, manB, phosphomannomutase/phosphoglucomut 0.003
PRK14320 443 PRK14320, glmM, phosphoglucosamine mutase; Provisi 0.004
>gnl|CDD|215211 PLN02371, PLN02371, phosphoglucosamine mutase family protein Back     alignment and domain information 
 Score =  210 bits (536), Expect = 2e-65
 Identities = 81/184 (44%), Positives = 106/184 (57%), Gaps = 14/184 (7%)

Query: 3   STTTPSISLQSNSSRTSFLSSPGPKCPKPFQITGLKLPFLSHSIKFT---HVKSSVTDKY 59
           S+  P++      + +  LS+         Q      P  S S+K T      ++     
Sbjct: 1   SSLAPTVPSDLLPATSGKLSTS------LSQSVTAPAPS-SPSLKLTRARTGTAAAASSS 53

Query: 60  NEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENER 119
            E  V +  D IR+LQNGSD+RGVA+EG +G  V LTP AVEAI  +F EW+   LE ++
Sbjct: 54  TESPVVD-KDDIRKLQNGSDIRGVAVEGVEGEPVTLTPPAVEAIGAAFAEWL---LEKKK 109

Query: 120 GRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYD 179
                +++VS+G+DPR+SGP L+ AVFAGLA AG  V DMGLATTPA FMSTL     YD
Sbjct: 110 ADGSGELRVSVGRDPRISGPRLADAVFAGLASAGLDVVDMGLATTPAMFMSTLTEREDYD 169

Query: 180 ASIM 183
           A IM
Sbjct: 170 APIM 173

Length = 583
>gnl|CDD|100091 cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e Back     alignment and domain information
>gnl|CDD|217263 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Back     alignment and domain information
>gnl|CDD|234431 TIGR03990, Arch_GlmM, phosphoglucosamine mutase Back     alignment and domain information
>gnl|CDD|224034 COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|100089 cd03087, PGM_like1, This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates Back     alignment and domain information
>gnl|CDD|237672 PRK14318, glmM, phosphoglucosamine mutase; Provisional Back     alignment and domain information
>gnl|CDD|100095 cd05802, GlmM, GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily Back     alignment and domain information
>gnl|CDD|100096 cd05803, PGM_like4, This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes Back     alignment and domain information
>gnl|CDD|130522 TIGR01455, glmM, phosphoglucosamine mutase Back     alignment and domain information
>gnl|CDD|100088 cd03086, PGM3, PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway Back     alignment and domain information
>gnl|CDD|215485 PLN02895, PLN02895, phosphoacetylglucosamine mutase Back     alignment and domain information
>gnl|CDD|237670 PRK14316, glmM, phosphoglucosamine mutase; Provisional Back     alignment and domain information
>gnl|CDD|184619 PRK14322, glmM, phosphoglucosamine mutase; Provisional Back     alignment and domain information
>gnl|CDD|237671 PRK14317, glmM, phosphoglucosamine mutase; Provisional Back     alignment and domain information
>gnl|CDD|172797 PRK14321, glmM, phosphoglucosamine mutase; Provisional Back     alignment and domain information
>gnl|CDD|184620 PRK14323, glmM, phosphoglucosamine mutase; Provisional Back     alignment and domain information
>gnl|CDD|172795 PRK14319, glmM, phosphoglucosamine mutase; Provisional Back     alignment and domain information
>gnl|CDD|100090 cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate Back     alignment and domain information
>gnl|CDD|236557 PRK09542, manB, phosphomannomutase/phosphoglucomutase; Reviewed Back     alignment and domain information
>gnl|CDD|172796 PRK14320, glmM, phosphoglucosamine mutase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 185
PLN02371 583 phosphoglucosamine mutase family protein 99.93
PF02878137 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, 99.91
PRK14323 440 glmM phosphoglucosamine mutase; Provisional 99.88
cd05802 434 GlmM GlmM is a bacterial phosphoglucosamine mutase 99.88
PRK14316 448 glmM phosphoglucosamine mutase; Provisional 99.87
PRK14324 446 glmM phosphoglucosamine mutase; Provisional 99.87
PRK14315 448 glmM phosphoglucosamine mutase; Provisional 99.87
PRK14320 443 glmM phosphoglucosamine mutase; Provisional 99.87
cd03089 443 PMM_PGM The phosphomannomutase/phosphoglucomutase 99.87
PRK14317 465 glmM phosphoglucosamine mutase; Provisional 99.87
PRK14318 448 glmM phosphoglucosamine mutase; Provisional 99.87
PRK14314 450 glmM phosphoglucosamine mutase; Provisional 99.87
PRK10887 443 glmM phosphoglucosamine mutase; Provisional 99.87
cd05805 441 MPG1_transferase GTP-mannose-1-phosphate guanyltra 99.87
PRK15414 456 phosphomannomutase CpsG; Provisional 99.87
cd05803 445 PGM_like4 This PGM-like (phosphoglucomutase-like) 99.86
TIGR01455 443 glmM phosphoglucosamine mutase. This model describ 99.86
PRK14321 449 glmM phosphoglucosamine mutase; Provisional 99.85
COG1109 464 {ManB} Phosphomannomutase [Carbohydrate transport 99.85
PRK14322 429 glmM phosphoglucosamine mutase; Provisional 99.85
cd05800 461 PGM_like2 This PGM-like (phosphoglucomutase-like) 99.85
cd03087 439 PGM_like1 This archaeal PGM-like (phosphoglucomuta 99.84
PRK09542 445 manB phosphomannomutase/phosphoglucomutase; Review 99.84
PRK14319 430 glmM phosphoglucosamine mutase; Provisional 99.83
PTZ00150 584 phosphoglucomutase-2-like protein; Provisional 99.82
cd03085 548 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bid 99.82
cd05799 487 PGM2 This CD includes PGM2 (phosphoglucomutase 2) 99.81
cd03088 459 ManB ManB is a bacterial phosphomannomutase (PMM) 99.81
PRK07564 543 phosphoglucomutase; Validated 99.81
PLN02307 579 phosphoglucomutase 99.81
TIGR01132 543 pgm phosphoglucomutase, alpha-D-glucose phosphate- 99.81
cd05801 522 PGM_like3 This bacterial PGM-like (phosphoglucomut 99.77
KOG1220 607 consensus Phosphoglucomutase/phosphomannomutase [C 99.64
PLN02895 562 phosphoacetylglucosamine mutase 98.93
cd03086 513 PGM3 PGM3 (phosphoglucomutase 3), also known as PA 98.91
PTZ00302 585 N-acetylglucosamine-phosphate mutase; Provisional 98.89
COG0033 524 Pgm Phosphoglucomutase [Carbohydrate transport and 98.89
KOG2537 539 consensus Phosphoglucomutase/phosphomannomutase [C 97.75
KOG0625 558 consensus Phosphoglucomutase [Carbohydrate transpo 97.15
cd03084 355 phosphohexomutase The alpha-D-phosphohexomutase su 96.33
PF02502140 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: 89.05
TIGR01120143 rpiB ribose 5-phosphate isomerase B. Involved in t 88.63
PRK12613141 galactose-6-phosphate isomerase subunit LacA; Prov 88.61
TIGR01118141 lacA galactose-6-phosphate isomerase, LacA subunit 88.54
COG0426388 FpaA Uncharacterized flavoproteins [Energy product 88.41
PRK08621142 galactose-6-phosphate isomerase subunit LacA; Revi 88.18
TIGR01119 171 lacB galactose-6-phosphate isomerase, LacB subunit 87.33
PTZ00215151 ribose 5-phosphate isomerase; Provisional 87.09
PRK05571148 ribose-5-phosphate isomerase B; Provisional 86.4
PRK08622 171 galactose-6-phosphate isomerase subunit LacB; Revi 85.75
PRK12615 171 galactose-6-phosphate isomerase subunit LacB; Revi 85.53
TIGR02133148 RPI_actino ribose 5-phosphate isomerase. This fami 84.59
TIGR00689144 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/La 83.59
COG0698151 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydra 82.01
>PLN02371 phosphoglucosamine mutase family protein Back     alignment and domain information 
Probab=99.93  E-value=3e-25  Score=209.27  Aligned_cols=129  Identities=54%  Similarity=0.829  Sum_probs=105.0

Q ss_pred             eeccccccccccchhhHHHhhhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEE
Q 029919           52 KSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLG  131 (185)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVG  131 (185)
                      .+....+..+|...+ ...++.||+++||||++++|+.|++++|||+++.++|+|||+|+.++.... +  ....+|+||
T Consensus        46 ~~~~~~~~~~~~~~~-~~~~~~lf~~~giRGv~~~g~~g~~v~lTpe~v~~ig~A~a~~l~~~~~~~-~--~~~~~VvVG  121 (583)
T PLN02371         46 TAAAASSSTESPVVD-KDDIRKLQNGSDIRGVAVEGVEGEPVTLTPPAVEAIGAAFAEWLLEKKKAD-G--SGELRVSVG  121 (583)
T ss_pred             eecccCCCCcCcCcc-HHHHHHhhhhcCcceEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc-c--CCCCeEEEE
Confidence            344445555655544 568999999999999999887776679999999999999999997541000 0  012479999


Q ss_pred             ecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919          132 KDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMG  184 (185)
Q Consensus       132 rD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI  184 (185)
                      ||+|.+|++|++++++||+++|++|+++|++|||+++|++...++++++||||
T Consensus       122 ~D~R~sS~~l~~a~a~gL~s~Gi~V~~~g~~pTP~~~~av~~~~~~~~gGImI  174 (583)
T PLN02371        122 RDPRISGPRLADAVFAGLASAGLDVVDMGLATTPAMFMSTLTEREDYDAPIMI  174 (583)
T ss_pred             eCCCCChHHHHHHHHHHHHHCCCEEEEecccCchHHHHHHHhccCCCceEEEE
Confidence            99999999999999999999999999999999999999994324489999998

>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) [] Back     alignment and domain information
>PRK14323 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily Back     alignment and domain information
>PRK14316 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>PRK14324 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>PRK14315 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>PRK14320 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e Back     alignment and domain information
>PRK14317 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>PRK14318 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>PRK14314 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>PRK10887 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity Back     alignment and domain information
>PRK15414 phosphomannomutase CpsG; Provisional Back     alignment and domain information
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes Back     alignment and domain information
>TIGR01455 glmM phosphoglucosamine mutase Back     alignment and domain information
>PRK14321 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK14322 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria Back     alignment and domain information
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates Back     alignment and domain information
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed Back     alignment and domain information
>PRK14319 glmM phosphoglucosamine mutase; Provisional Back     alignment and domain information
>PTZ00150 phosphoglucomutase-2-like protein; Provisional Back     alignment and domain information
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes Back     alignment and domain information
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1) Back     alignment and domain information
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate Back     alignment and domain information
>PRK07564 phosphoglucomutase; Validated Back     alignment and domain information
>PLN02307 phosphoglucomutase Back     alignment and domain information
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific Back     alignment and domain information
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily Back     alignment and domain information
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02895 phosphoacetylglucosamine mutase Back     alignment and domain information
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway Back     alignment and domain information
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional Back     alignment and domain information
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0625 consensus Phosphoglucomutase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates Back     alignment and domain information
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB) Back     alignment and domain information
>TIGR01120 rpiB ribose 5-phosphate isomerase B Back     alignment and domain information
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional Back     alignment and domain information
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed Back     alignment and domain information
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit Back     alignment and domain information
>PTZ00215 ribose 5-phosphate isomerase; Provisional Back     alignment and domain information
>PRK05571 ribose-5-phosphate isomerase B; Provisional Back     alignment and domain information
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed Back     alignment and domain information
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed Back     alignment and domain information
>TIGR02133 RPI_actino ribose 5-phosphate isomerase Back     alignment and domain information
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family Back     alignment and domain information
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
1wqa_A 455 Crystal Structure Of Pyrococcus Horikoshii Phosphom 4e-06
1p5d_X 463 Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM Lengt 2e-05
2h4l_X 463 Complex Of PmmPGM WITH RIBOSE 1-Phosphate Length = 2e-05
2fkf_A 462 PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMON 2e-05
2fkm_X 462 Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisph 2e-05
3bkq_X 463 Structure Of The P368g Mutant Of PmmPGM IN COMPLEX 2e-05
1k2y_X 463 Crystal Structure Of Phosphomannomutase/phosphogluc 2e-05
3rsm_A 463 Crystal Structure Of S108c Mutant Of PmmPGM Length 2e-05
1k35_A 463 Crystal Structure Of Phosphomannomutase/phosphogluc 6e-05
3pdk_A 469 Crystal Structure Of Phosphoglucosamine Mutase From 7e-04
>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+ Length = 455 Back     alignment and structure 
Iteration: 1

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Query: 80  VRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGP 139
           VRG+A E        +TP     I  +FG  + R     R +P+    V +G+D RVSG 
Sbjct: 10  VRGIANE-------KITPEFAMKIGMAFGTLLKRE---GRKKPL----VVVGRDTRVSGE 55
Query: 140 SLSVAVFAGLARAGCLVFDMGLATTPACFMST 171
            L  A+ +GL   GC V D+G+A TPA   +T
Sbjct: 56  MLKEALISGLLSVGCDVIDVGIAPTPAVQWAT 87
>pdb|1P5D|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM Length = 463 Back     alignment and structure
>pdb|2H4L|X Chain X, Complex Of PmmPGM WITH RIBOSE 1-Phosphate Length = 463 Back     alignment and structure
>pdb|2FKF|A Chain A, PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMONAS AERUGINOSA WITH Alpha-D-Glucose 1,6-Bisphosphate Bound Length = 462 Back     alignment and structure
>pdb|2FKM|X Chain X, Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisphosphate Bound Length = 462 Back     alignment and structure
>pdb|3BKQ|X Chain X, Structure Of The P368g Mutant Of PmmPGM IN COMPLEX WITH ITS SUBSTRATE Length = 463 Back     alignment and structure
>pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase/phosphoglucomutase S108a Mutant From P. Aeruginosa Length = 463 Back     alignment and structure
>pdb|3RSM|A Chain A, Crystal Structure Of S108c Mutant Of PmmPGM Length = 463 Back     alignment and structure
>pdb|1K35|A Chain A, Crystal Structure Of Phosphomannomutase/phosphoglucomutase From P.aeruginosa Length = 463 Back     alignment and structure
>pdb|3PDK|A Chain A, Crystal Structure Of Phosphoglucosamine Mutase From B. Anthracis Length = 469 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
3uw2_A 485 Phosphoglucomutase/phosphomannomutase family PROT; 2e-13
1p5d_X 463 PMM, phosphomannomutase; alpha/beta protein, phosp 5e-13
1wqa_A 455 Phospho-sugar mutase; alpha-beta protein, unphosph 2e-11
2f7l_A 455 455AA long hypothetical phospho-sugar mutase; phos 1e-09
3pdk_A 469 Phosphoglucosamine mutase; 4-domain architecture, 4e-08
1tuo_A 464 Putative phosphomannomutase; thermus thermophilus 1e-07
3i3w_A 443 Phosphoglucosamine mutase; csgid, IDP02164, isomer 1e-06
2dka_A 544 Phosphoacetylglucosamine mutase; isomerase; 1.93A 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis} Length = 485 Back     alignment and structure
 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 22/111 (19%)

Query: 79  DVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSG 138
           D+RGV  +        L      +I  +FG  V       +G       V + +D R+SG
Sbjct: 32  DIRGVIGK-------TLDADVARSIGRAFGSEVR-----AQGGD----AVVVARDGRLSG 75

Query: 139 PSLSVAVFAGLARAGCLVFDMGLATTP----ACFMSTLLPPFAY--DASIM 183
           P L  A+  GL  AG  V D+G+  TP    A  +   L       D+ I+
Sbjct: 76  PELVGALADGLRAAGVDVVDVGMVPTPVGYFAASVPLALSGGERRVDSCIV 126
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X* Length = 463 Back     alignment and structure
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii} Length = 455 Back     alignment and structure
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii} Length = 455 Back     alignment and structure
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis} Length = 469 Back     alignment and structure
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus} Length = 464 Back     alignment and structure
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp} Length = 443 Back     alignment and structure
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A* Length = 544 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query185
3i3w_A 443 Phosphoglucosamine mutase; csgid, IDP02164, isomer 99.89
3pdk_A 469 Phosphoglucosamine mutase; 4-domain architecture, 99.89
1p5d_X 463 PMM, phosphomannomutase; alpha/beta protein, phosp 99.88
2f7l_A 455 455AA long hypothetical phospho-sugar mutase; phos 99.88
3uw2_A 485 Phosphoglucomutase/phosphomannomutase family PROT; 99.88
1wqa_A 455 Phospho-sugar mutase; alpha-beta protein, unphosph 99.88
1tuo_A 464 Putative phosphomannomutase; thermus thermophilus 99.86
4hjh_A 481 Phosphomannomutase; structural genomics, niaid, na 99.84
2z0f_A 524 Putative phosphoglucomutase; isomerase, magnesium, 99.81
3na5_A 570 Phosphoglucomutase; isomerase, metal binding; HET: 99.81
1kfi_A 572 Phosphoglucomutase 1; parafusin, phosphoprotein PP 99.78
3pmg_A 561 Alpha-D-glucose-1,6-bisphosphate; phosphoglucomuta 99.74
2dka_A 544 Phosphoacetylglucosamine mutase; isomerase; 1.93A 98.81
1o1x_A155 Ribose-5-phosphate isomerase RPIB; structural geno 90.84
2vvr_A149 Ribose-5-phosphate isomerase B; RPIB, carbohydrate 89.73
2vvp_A162 Ribose-5-phosphate isomerase B; RPIB, RV2465C, RAR 87.31
3he8_A149 Ribose-5-phosphate isomerase; CTRPI B, isomerizati 86.67
3ph3_A169 Ribose-5-phosphate isomerase; alpha-beta-alpha san 85.96
4em8_A148 Ribose 5-phosphate isomerase B; ssgcid, seattle st 84.75
3s5p_A166 Ribose 5-phosphate isomerase; structural genomics, 80.68
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp} Back     alignment and structure
Probab=99.89  E-value=1.1e-23  Score=190.98  Aligned_cols=96  Identities=24%  Similarity=0.334  Sum_probs=88.0

Q ss_pred             hhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCC-eEEEEecCCCChHHHHHHHHHHHH
Q 029919           72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDV-KVSLGKDPRVSGPSLSVAVFAGLA  150 (185)
Q Consensus        72 ~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~-~VvVGrD~R~SS~~la~ava~gL~  150 (185)
                      +++|+++||||++++|      +||++++.++|+|||+|+.+.     +    .. +|+||||+|.+|++|++++++||+
T Consensus         2 ~~~FGt~GiRG~~~~g------~lt~~~v~~~g~a~~~~l~~~-----~----~~~~VvVG~D~R~ss~~l~~a~~~gl~   66 (443)
T 3i3w_A            2 AKYFGTDGIRGEVANS------TITVEFTQKLGNAVGSLINQK-----N----YPKFVIVGQDTRSSGGFLKFALVSGLN   66 (443)
T ss_dssp             -CCCCSSSSEEEBSSS------SBSHHHHHHHHHHHHHHHHHT-----T----CCSEEEEEECSCTTHHHHHHHHHHHHH
T ss_pred             CcccCCCCeeEEeCCC------CCCHHHHHHHHHHHHHHHHhc-----C----CCCeEEEEeCCCcCHHHHHHHHHHHHH
Confidence            5799999999999842      799999999999999999764     1    24 799999999999999999999999


Q ss_pred             hCCCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919          151 RAGCLVFDMGLATTPACFMSTLLPPFAYDASIMG  184 (185)
Q Consensus       151 s~Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI  184 (185)
                      ++|++|+++|++|||+++|++  +++++++||||
T Consensus        67 s~G~~V~~~g~~pTP~~~~av--~~~~a~~GImI   98 (443)
T 3i3w_A           67 AAGIDVLDLGVVPTPVVAFMT--VKHRAAAGFVI   98 (443)
T ss_dssp             HHTCEEEEEEECCHHHHHHHH--HHTTCSEEEEE
T ss_pred             HCCCeEEEeCCCCHHHHHHHH--HhcCCCeEEEE
Confidence            999999999999999999999  57899999998
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis} Back     alignment and structure
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X* Back     alignment and structure
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii} Back     alignment and structure
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis} Back     alignment and structure
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus} Back     alignment and structure
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV} Back     alignment and structure
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics; 2.52A {Thermus thermophilus} Back     alignment and structure
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A {Salmonella enterica subsp} PDB: 3olp_A 2fuv_A* Back     alignment and structure
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis, isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A Back     alignment and structure
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase, phosphotransferase; HET: SEP; 2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A* Back     alignment and structure
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A* Back     alignment and structure
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1 Back     alignment and structure
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A Back     alignment and structure
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A Back     alignment and structure
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A* Back     alignment and structure
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A* Back     alignment and structure
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query185
d1p5dx1146 Phosphomannomutase/phosphoglucomutase {Pseudomonas 99.94
d3pmga1190 Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) 99.83
d1kfia1203 Exocytosis-sensitive phosphoprotein, pp63/parafusi 99.72
d1nn4a_159 Alternate ribose 5-phosphate isomerase B, RpiB {Es 86.53
d7reqa2168 Methylmalonyl-CoA mutase alpha subunit, C-terminal 86.4
d2vvpa1156 Alternate ribose 5-phosphate isomerase B, RpiB {My 83.96
>d1p5dx1 c.84.1.1 (X:9-154) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphoglucomutase, first 3 domains
superfamily: Phosphoglucomutase, first 3 domains
family: Phosphoglucomutase, first 3 domains
domain: Phosphomannomutase/phosphoglucomutase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=8.7e-27  Score=182.04  Aligned_cols=95  Identities=27%  Similarity=0.437  Sum_probs=88.7

Q ss_pred             hhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029919           72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR  151 (185)
Q Consensus        72 ~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s  151 (185)
                      +++|++|||||+++       ++||++++.++|+||++|+.++.         .++|+||||+|.+|++|+++++++|++
T Consensus         3 ~sif~~~dIRGi~~-------~~lt~~~~~~ig~a~~~~~~~~~---------~~~VvIg~D~R~ss~~~~~~~~~gl~~   66 (146)
T d1p5dx1           3 ASIFRAYDIRGVVG-------DTLTAETAYWIGRAIGSESLARG---------EPCVAVGRDGRLSGPELVKQLIQGLVD   66 (146)
T ss_dssp             GGGBCSSSEEEEBT-------TTBCHHHHHHHHHHHHHHHHHTT---------CCEEEEEECSCTTHHHHHHHHHHHHHT
T ss_pred             hhhccccCEeeeCC-------CCcCHHHHHHHHHHHHHHHHhcC---------CCEEEEEECCccchhhhhhhhheeecc
Confidence            56899999999997       48999999999999999998752         368999999999999999999999999


Q ss_pred             CCCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919          152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMG  184 (185)
Q Consensus       152 ~Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI  184 (185)
                      .|++|+++|++|||+++|++  +++++++||||
T Consensus        67 ~G~~V~~~g~~pTP~l~~~~--~~~~~~~GI~I   97 (146)
T d1p5dx1          67 CGCQVSDVGMVPTPVLYYAA--NVLEGKSGVML   97 (146)
T ss_dssp             BTCEEEEEEECCHHHHHHHH--HHSSCSEEEEE
T ss_pred             CceEEEeccccccHHHHHHH--HhhccCceeEE
Confidence            99999999999999999999  57899999998
>d3pmga1 c.84.1.1 (A:1-190) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1kfia1 c.84.1.1 (A:3-205) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]} Back     information, alignment and structure
>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure