Citrus Sinensis ID: 029924

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
MTFKVQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQG
ccccccccccccccEEEEEEcccccccccccccEEEEccccccccccccccccHHHHHHHHHccccccccccccccEEEccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHcc
ccccccccccccccEEEEEEccEEEEEEccccHEEEEcccHHHcccHHHHcccHHHHHHHHHHHHHccccccccccEEEEcccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHHHccc
mtfkvqtlsfstktslkiskgdisrwcvdrssdaivsptneilllggftaaagpdlqkacyqipeaqprvrcppgearitpgfklpvshvihtvgpvfnfhcnpeDILRSAYKNCLSvgkanniqyiafpaiscgvsqyppdeaATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQG
mtfkvqtlsfstktslkiskgdisrwCVDRSSDAIVSPTNEILLLGGFTAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQG
MTFKVQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQG
***************LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKA******
************KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQG
MTFKVQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQG
********SFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQG
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTFKVQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query185 2.2.26 [Sep-21-2011]
Q87JZ5170 Macro domain-containing p yes no 0.848 0.923 0.377 1e-25
Q8P5Z8179 Macro domain-containing p yes no 0.756 0.782 0.421 5e-24
Q8PHB6179 Macro domain-containing p yes no 0.756 0.782 0.414 6e-24
B4T2X8179 O-acetyl-ADP-ribose deace yes no 0.854 0.882 0.387 1e-23
P67341179 O-acetyl-ADP-ribose deace yes no 0.854 0.882 0.381 2e-23
P67342179 O-acetyl-ADP-ribose deace N/A no 0.854 0.882 0.381 2e-23
B5F961179 O-acetyl-ADP-ribose deace yes no 0.854 0.882 0.381 3e-23
B5RBF3179 O-acetyl-ADP-ribose deace yes no 0.854 0.882 0.375 8e-23
D3RKJ0175 O-acetyl-ADP-ribose deace yes no 0.816 0.862 0.433 2e-22
B5XXK9175 O-acetyl-ADP-ribose deace yes no 0.816 0.862 0.433 2e-22
>sp|Q87JZ5|Y4103_VIBPA Macro domain-containing protein VPA0103 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VPA0103 PE=4 SV=1 Back     alignment and function desciption
 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 97/167 (58%), Gaps = 10/167 (5%)

Query: 14  TSLKISKGDISRWCVDRSSDAIVSPTNEILLLGG-----FTAAAGPDLQKACYQIPEAQP 68
            ++ + +GDI+   VD    AIV+  N  +L GG        AAGP L  ACY + +   
Sbjct: 2   NAISLVQGDITTAHVD----AIVNAANPRMLGGGGVDGAIHRAAGPALINACYAVDDVD- 56

Query: 69  RVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIA 128
            +RCP G+ARIT    L   +VIH VGP+++   +P+ +L SAY+  L +  AN+ Q +A
Sbjct: 57  GIRCPFGDARITEAGNLNARYVIHAVGPIYDKFADPKTVLESAYQRSLDLALANHCQSVA 116

Query: 129 FPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVW 175
            PAISCGV  YPP EAA +A++  +       ++ F LF++++ ++W
Sbjct: 117 LPAISCGVYGYPPQEAAEVAMAVCQRPEYAALDMRFYLFSEEMLSIW 163

Vibrio parahaemolyticus (taxid: 670)
>sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=XCC3184 PE=4 SV=1 Back     alignment and function description
>sp|Q8PHB6|Y3343_XANAC Macro domain-containing protein XAC3343 OS=Xanthomonas axonopodis pv. citri (strain 306) GN=XAC3343 PE=4 SV=2 Back     alignment and function description
>sp|B4T2X8|YMDB_SALNS O-acetyl-ADP-ribose deacetylase OS=Salmonella newport (strain SL254) GN=ymdB PE=3 SV=1 Back     alignment and function description
>sp|P67341|YMDB_SALTY O-acetyl-ADP-ribose deacetylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ymdB PE=3 SV=1 Back     alignment and function description
>sp|P67342|YMDB_SALTI O-acetyl-ADP-ribose deacetylase OS=Salmonella typhi GN=ymdB PE=3 SV=1 Back     alignment and function description
>sp|B5F961|YMDB_SALA4 O-acetyl-ADP-ribose deacetylase OS=Salmonella agona (strain SL483) GN=ymdB PE=3 SV=1 Back     alignment and function description
>sp|B5RBF3|YMDB_SALG2 O-acetyl-ADP-ribose deacetylase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ymdB PE=3 SV=1 Back     alignment and function description
>sp|D3RKJ0|YMDB_KLEVT O-acetyl-ADP-ribose deacetylase OS=Klebsiella variicola (strain At-22) GN=ymdB PE=3 SV=1 Back     alignment and function description
>sp|B5XXK9|YMDB_KLEP3 O-acetyl-ADP-ribose deacetylase OS=Klebsiella pneumoniae (strain 342) GN=ymdB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query185
297736490190 unnamed protein product [Vitis vinifera] 0.956 0.931 0.664 1e-65
225448685231 PREDICTED: macro domain-containing prote 0.956 0.766 0.664 2e-65
449491648247 PREDICTED: macro domain-containing prote 0.940 0.704 0.636 2e-62
255559685269 Protein LRP16, putative [Ricinus communi 0.940 0.646 0.631 3e-62
23397339239 unknown protein [Arabidopsis thaliana] 0.956 0.740 0.615 9e-62
449457407247 PREDICTED: macro domain-containing prote 0.940 0.704 0.631 1e-61
297827693256 hypothetical protein ARALYDRAFT_483117 [ 0.956 0.691 0.615 1e-61
357436403233 Appr-1-p processing enzyme family protei 0.945 0.751 0.627 1e-61
224126573180 predicted protein [Populus trichocarpa] 0.913 0.938 0.666 2e-61
30688336257 appr-1-p processing enzyme family protei 0.956 0.688 0.609 7e-61
>gi|297736490|emb|CBI25361.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/182 (66%), Positives = 142/182 (78%), Gaps = 5/182 (2%)

Query: 8   LSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGG-----FTAAAGPDLQKACYQ 62
           L+ S  +SLKI KGDI++W VD SSDAIV+P NE +L GG        AAGP+L  ACY+
Sbjct: 8   LALSPTSSLKIQKGDITKWFVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELVAACYK 67

Query: 63  IPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKAN 122
           +PE +P +RCP GEARIT GFKLP +HVIHTVGP+++   NPE  L+SAY NCLS+ K N
Sbjct: 68  VPEVRPGIRCPTGEARITQGFKLPAAHVIHTVGPIYDVDSNPEASLKSAYANCLSLAKEN 127

Query: 123 NIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKEL 182
           N+QYIAFPAISCGV  YP DEAAT+AISTVKEF  D KEVHF+LF+DDIYNVWL KA EL
Sbjct: 128 NVQYIAFPAISCGVFGYPYDEAATVAISTVKEFGKDLKEVHFVLFSDDIYNVWLNKANEL 187

Query: 183 LQ 184
           LQ
Sbjct: 188 LQ 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225448685|ref|XP_002280352.1| PREDICTED: macro domain-containing protein VPA0103 [Vitis vinifera] gi|147769460|emb|CAN70345.1| hypothetical protein VITISV_012577 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449491648|ref|XP_004158963.1| PREDICTED: macro domain-containing protein VPA0103-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255559685|ref|XP_002520862.1| Protein LRP16, putative [Ricinus communis] gi|223539993|gb|EEF41571.1| Protein LRP16, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|23397339|gb|AAK93649.2| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449457407|ref|XP_004146440.1| PREDICTED: macro domain-containing protein VPA0103-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297827693|ref|XP_002881729.1| hypothetical protein ARALYDRAFT_483117 [Arabidopsis lyrata subsp. lyrata] gi|297327568|gb|EFH57988.1| hypothetical protein ARALYDRAFT_483117 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357436403|ref|XP_003588477.1| Appr-1-p processing enzyme family protein [Medicago truncatula] gi|355477525|gb|AES58728.1| Appr-1-p processing enzyme family protein [Medicago truncatula] gi|388499270|gb|AFK37701.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224126573|ref|XP_002319871.1| predicted protein [Populus trichocarpa] gi|222858247|gb|EEE95794.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|30688336|ref|NP_030605.2| appr-1-p processing enzyme family protein [Arabidopsis thaliana] gi|24030242|gb|AAN41297.1| unknown protein [Arabidopsis thaliana] gi|330254759|gb|AEC09853.1| appr-1-p processing enzyme family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query185
TAIR|locus:2061923257 AT2G40600 "AT2G40600" [Arabido 0.951 0.684 0.613 2.8e-57
UNIPROTKB|Q74FT0173 ymdB "O-acetyl-ADP-ribose deac 0.789 0.843 0.407 1e-22
TIGR_CMR|GSU_0526173 GSU_0526 "conserved hypothetic 0.789 0.843 0.407 1e-22
UNIPROTKB|P0A8D6177 ymdB "O-acetyl-ADP-ribose deac 0.821 0.858 0.383 3.5e-20
UNIPROTKB|A1Z1Q3 448 MACROD2 "O-acetyl-ADP-ribose d 0.864 0.357 0.389 1e-19
MGI|MGI:1920149 475 Macrod2 "MACRO domain containi 0.864 0.336 0.383 2e-19
RGD|1591318 531 Macrod2 "MACRO domain containi 0.864 0.301 0.383 3.6e-19
ZFIN|ZDB-GENE-040912-100248 macrod1 "MACRO domain containi 0.843 0.629 0.346 5.1e-19
UNIPROTKB|Q3AEI4181 CHY_0594 "Putative uncharacter 0.891 0.911 0.364 2.8e-18
TIGR_CMR|CHY_0594181 CHY_0594 "conserved hypothetic 0.891 0.911 0.364 2.8e-18
TAIR|locus:2061923 AT2G40600 "AT2G40600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 111/181 (61%), Positives = 138/181 (76%)

Query:     9 SFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGG-----FTAAAGPDLQKACYQI 63
             + S  + LKI KGDI++W VD SSDAIV+P NE +L GG        AAGP L+ ACY++
Sbjct:    75 NLSDSSLLKILKGDITKWSVDSSSDAIVNPANERMLGGGGADGAIHRAAGPQLRAACYEV 134

Query:    64 PEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANN 123
             PE +P VRCP GEARITPGF LP S VIHTVGP+++   NP++ L ++YKN L V K NN
Sbjct:   135 PEVRPGVRCPTGEARITPGFNLPASRVIHTVGPIYDSDVNPQESLTNSYKNSLRVAKENN 194

Query:   124 IQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELL 183
             I+YIAFPAISCG+  YP DEAA I IST+K+F+ DFKEVHF+LF DDI++VW+ KAKE+L
Sbjct:   195 IKYIAFPAISCGIYGYPFDEAAAIGISTIKQFSTDFKEVHFVLFADDIFSVWVNKAKEVL 254

Query:   184 Q 184
             Q
Sbjct:   255 Q 255
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|Q74FT0 ymdB "O-acetyl-ADP-ribose deacetylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0526 GSU_0526 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P0A8D6 ymdB "O-acetyl-ADP-ribose deacetylase, regulator of RNase III activity" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|A1Z1Q3 MACROD2 "O-acetyl-ADP-ribose deacetylase MACROD2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1920149 Macrod2 "MACRO domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1591318 Macrod2 "MACRO domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040912-100 macrod1 "MACRO domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AEI4 CHY_0594 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0594 CHY_0594 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0T5Z6YMDB_SHIF83, ., 5, ., 1, ., -0.37790.84860.8870yesno
Q985D2Y7730_RHILONo assigned EC number0.36310.86480.9090yesno
P67341YMDB_SALTY3, ., 5, ., 1, ., -0.38150.85400.8826yesno
B7LT90YMDB_ESCF33, ., 5, ., 1, ., -0.36510.86480.9039yesno
Q926Y8Y2902_LISINNo assigned EC number0.33520.81620.8579yesno
Q9KHE2Y189_STRGRNo assigned EC number0.34500.87020.9096yesno
Q32E73YMDB_SHIDS3, ., 5, ., 1, ., -0.39520.82160.8587yesno
A8AI35YMDB_CITK83, ., 5, ., 1, ., -0.36200.85940.8983yesno
A4W960YMDB_ENT383, ., 5, ., 1, ., -0.37350.85940.8833yesno
P0A8D7YMDB_ECOL63, ., 5, ., 1, ., -0.37790.84860.8870yesno
Q9ZBG3Y6450_STRCONo assigned EC number0.33520.87020.9526yesno
Q87JZ5Y4103_VIBPANo assigned EC number0.37720.84860.9235yesno
C9Y0V8YMDB_CROTZ3, ., 5, ., 1, ., -0.35080.84320.8863yesno
Q9RS39Y2288_DEIRANo assigned EC number0.34830.84860.9235yesno
Q71W03Y2748_LISMFNo assigned EC number0.32750.82160.8636yesno
E1SDF1YMDB1_PANVC3, ., 5, ., 1, ., -0.32740.84320.9122yesno
Q97AU0Y719_THEVONo assigned EC number0.35480.92970.9247yesno
Q8RB30Y995_THETNNo assigned EC number0.37070.88640.9371yesno
Q8Y2K1Y334_RALSONo assigned EC number0.37140.84320.9122yesno
Q8RHQ2Y1951_FUSNNNo assigned EC number0.35160.87560.9257yesno
Q8EYT0Y4133_LEPINNo assigned EC number0.38410.85940.9085yesno
D2TT52YMDB_CITRI3, ., 5, ., 1, ., -0.36780.85940.8983yesno
B5F961YMDB_SALA43, ., 5, ., 1, ., -0.38150.85400.8826yesno
Q72M93Y3295_LEPICNo assigned EC number0.37850.85940.9085yesno
D5CE05YMDB_ENTCC3, ., 5, ., 1, ., -0.36780.85940.8833yesno
A7MG20YMDB_CROS83, ., 5, ., 1, ., -0.35080.84320.8666yesno
B5XXK9YMDB_KLEP33, ., 5, ., 1, ., -0.43370.81620.8628yesno
B4T2X8YMDB_SALNS3, ., 5, ., 1, ., -0.38720.85400.8826yesno
Q8Y3S3Y2759_LISMONo assigned EC number0.34480.82160.8636yesno
B5RBF3YMDB_SALG23, ., 5, ., 1, ., -0.37570.85400.8826yesno
Q88SK6Y3408_LACPLNo assigned EC number0.37640.81080.8720yesno
Q44020YGB2_CUPNENo assigned EC number0.36040.84860.9075yesno
Q8TQD0Y1614_METACNo assigned EC number0.36450.93510.8871yesno
D3RKJ0YMDB_KLEVT3, ., 5, ., 1, ., -0.43370.81620.8628yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
cd02908165 cd02908, Macro_Appr_pase_like, Macro domain, Appr- 1e-57
PRK00431177 PRK00431, PRK00431, RNase III inhibitor; Provision 3e-50
COG2110179 COG2110, COG2110, Predicted phosphatase homologous 2e-39
pfam01661117 pfam01661, Macro, Macro domain 5e-39
PRK04143264 PRK04143, PRK04143, hypothetical protein; Provisio 1e-36
cd02907175 cd02907, Macro_Af1521_BAL_like, Macro domain, Af15 5e-36
cd02906147 cd02906, Macro_1, Macro domain, Unknown family 1 2e-31
smart00506133 smart00506, A1pp, Appr-1"-p processing enzyme 7e-31
cd02905140 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_lik 2e-28
cd02749147 cd02749, Macro, Macro domain, a high-affinity ADP- 2e-24
cd02903137 cd02903, Macro_BAL_like, Macro domain, BAL_like fa 2e-18
cd03330133 cd03330, Macro_2, Macro domain, Unknown family 2 5e-18
cd02904186 cd02904, Macro_H2A_like, Macro domain, Macro_H2A_l 7e-08
>gnl|CDD|239236 cd02908, Macro_Appr_pase_like, Macro domain, Appr-1"-pase_like family Back     alignment and domain information 
 Score =  178 bits (453), Expect = 1e-57
 Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 19/172 (11%)

Query: 16  LKISKGDISRWCVDRSSDAIVSPTNEILLLGG-----FTAAAGPDLQKACYQIPEAQPRV 70
           ++I +GDI++  VD    AIV+  N  LL GG        AAGP+L + C ++       
Sbjct: 2   IEIIQGDITKLEVD----AIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELRG----- 52

Query: 71  RCPPGEARITPGFKLPVSHVIHTVGPVFN-FHCNPEDILRSAYKNCLSVGKANNIQYIAF 129
            CP GEA IT G+ LP  +VIHTVGPV+     N  ++L S Y+N L + + N ++ IAF
Sbjct: 53  -CPTGEAVITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSLELARENGLRSIAF 111

Query: 130 PAISCGVSQYPPDEAATIAISTVKEFA---NDFKEVHFILFTDDIYNVWLKK 178
           PAIS GV  YP DEAA IA+ TV+EF    +  + V F+ F+++ Y ++ K 
Sbjct: 112 PAISTGVYGYPLDEAARIALKTVREFLEEHDAIERVIFVCFSEEDYEIYEKA 163

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate. Length = 165
>gnl|CDD|234759 PRK00431, PRK00431, RNase III inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|225021 COG2110, COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only] Back     alignment and domain information
>gnl|CDD|216634 pfam01661, Macro, Macro domain Back     alignment and domain information
>gnl|CDD|235225 PRK04143, PRK04143, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|239235 cd02907, Macro_Af1521_BAL_like, Macro domain, Af1521- and BAL-like family Back     alignment and domain information
>gnl|CDD|239234 cd02906, Macro_1, Macro domain, Unknown family 1 Back     alignment and domain information
>gnl|CDD|214701 smart00506, A1pp, Appr-1"-p processing enzyme Back     alignment and domain information
>gnl|CDD|239233 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_like family Back     alignment and domain information
>gnl|CDD|239150 cd02749, Macro, Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases) Back     alignment and domain information
>gnl|CDD|239231 cd02903, Macro_BAL_like, Macro domain, BAL_like family Back     alignment and domain information
>gnl|CDD|239446 cd03330, Macro_2, Macro domain, Unknown family 2 Back     alignment and domain information
>gnl|CDD|239232 cd02904, Macro_H2A_like, Macro domain, Macro_H2A_like family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 185
cd02904186 Macro_H2A_like Macro domain, Macro_H2A_like family 100.0
cd02907175 Macro_Af1521_BAL_like Macro domain, Af1521- and BA 100.0
cd02908165 Macro_Appr_pase_like Macro domain, Appr-1"-pase_li 100.0
PRK00431177 RNase III inhibitor; Provisional 100.0
PRK04143264 hypothetical protein; Provisional 100.0
cd02905140 Macro_GDAP2_like Macro domain, GDAP2_like family. 100.0
COG2110179 Predicted phosphatase homologous to the C-terminal 100.0
cd02906147 Macro_1 Macro domain, Unknown family 1. The macro 100.0
cd02903137 Macro_BAL_like Macro domain, BAL_like family. The 100.0
cd03330133 Macro_2 Macro domain, Unknown family 2. The macro 100.0
KOG2633200 consensus Hismacro and SEC14 domain-containing pro 99.97
cd02900186 Macro_Appr_pase Macro domain, Appr-1"-pase family. 99.97
smart00506133 A1pp Appr-1"-p processing enzyme. Function determi 99.97
cd02749147 Macro Macro domain, a high-affinity ADP-ribose bin 99.96
PF01661118 Macro: Macro domain; InterPro: IPR002589 The Macro 99.95
PRK13341725 recombination factor protein RarA/unknown domain f 99.94
cd02901140 Macro_Poa1p_like Macro domain, Poa1p_like family. 99.9
PHA02595154 tk.4 hypothetical protein; Provisional 99.78
PF14519280 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJ 99.26
cd03331152 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like fam 98.83
TIGR02452266 conserved hypothetical protein TIGR02452. Members 98.11
COG4295285 Uncharacterized protein conserved in bacteria [Fun 97.51
PF10154510 DUF2362: Uncharacterized conserved protein (DUF236 97.42
PHA00684128 hypothetical protein 81.16
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family Back     alignment and domain information 
Probab=100.00  E-value=1.1e-47  Score=297.07  Aligned_cols=163  Identities=25%  Similarity=0.437  Sum_probs=149.8

Q ss_pred             EeeeCCCcEEEEEEccc--cccccCCCCcEEEEccCCCCCCCch-----hhhhCHHHHHHHhhccccCCCCCCCCCcEEE
Q 029924            7 TLSFSTKTSLKISKGDI--SRWCVDRSSDAIVSPTNEILLLGGF-----TAAAGPDLQKACYQIPEAQPRVRCPPGEARI   79 (185)
Q Consensus         7 ~~~~~~~~~i~i~~GDI--~~~~~~~~~D~IVn~an~~l~~~~g-----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~   79 (185)
                      +++...+.+|.+++|||  |++++    |+|||++|++|.+++|     +++||++|++||+++.+  ..+++++|++++
T Consensus        11 ~~~~~~~~~i~i~~gDI~~t~~~v----DaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~--~~g~~~~G~~~i   84 (186)
T cd02904          11 TKSLFLGQKLSLVQSDISIGSIDV----EGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRK--SNGPLEIAGAAV   84 (186)
T ss_pred             chhhcCCCEEEEEECCccccceec----cEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHH--hcCCCCCCCEEE
Confidence            34455689999999999  99886    9999999999999988     99999999999998763  346899999999


Q ss_pred             ccCCCCCCCeEEEecCCCcCCCCChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHhc--
Q 029924           80 TPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN--  157 (185)
Q Consensus        80 T~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~~--  157 (185)
                      |++|+||||||||+|+|.|+.+ .+++.|++||++||+.|++++++|||||+||||++|||++++|++|++++++|++  
T Consensus        85 T~a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~  163 (186)
T cd02904          85 SQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVST  163 (186)
T ss_pred             ccCCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999765 4578999999999999999999999999999999999999999999999999985  


Q ss_pred             ---CCCeEEEEecChHHHHHHH
Q 029924          158 ---DFKEVHFILFTDDIYNVWL  176 (185)
Q Consensus       158 ---~l~~V~~v~~~~~~~~~f~  176 (185)
                         ++++|+||+|+++.+++|.
T Consensus       164 ~~~~l~~I~fv~~~~~~~~~y~  185 (186)
T cd02904         164 MSSSIKQIYFVLFDSESIGIYV  185 (186)
T ss_pred             CCCCccEEEEEECCHHHHHHhh
Confidence               4789999999999999984

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family Back     alignment and domain information
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family Back     alignment and domain information
>PRK00431 RNase III inhibitor; Provisional Back     alignment and domain information
>PRK04143 hypothetical protein; Provisional Back     alignment and domain information
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family Back     alignment and domain information
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only] Back     alignment and domain information
>cd02906 Macro_1 Macro domain, Unknown family 1 Back     alignment and domain information
>cd02903 Macro_BAL_like Macro domain, BAL_like family Back     alignment and domain information
>cd03330 Macro_2 Macro domain, Unknown family 2 Back     alignment and domain information
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family Back     alignment and domain information
>smart00506 A1pp Appr-1"-p processing enzyme Back     alignment and domain information
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases) Back     alignment and domain information
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family Back     alignment and domain information
>PHA02595 tk Back     alignment and domain information
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A Back     alignment and domain information
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily Back     alignment and domain information
>TIGR02452 conserved hypothetical protein TIGR02452 Back     alignment and domain information
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans Back     alignment and domain information
>PHA00684 hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
1spv_A184 Crystal Structure Of The Putative Phosphatase Of Es 4e-21
2x47_A235 Crystal Structure Of Human Macrod1 Length = 235 7e-16
3q6z_A214 Human Parp14 (Artd8)-Macro Domain 1 In Complex With 4e-15
1yd9_A193 1.6a Crystal Structure Of The Non-Histone Domain Of 2e-12
1zr3_A211 Crystal Structure Of The Macro-Domain Of Human Core 2e-12
2dx6_A159 Crystal Structure Of Conserved Hypothetical Protein 7e-10
1zr5_A214 Crystal Structure Of The Macro-Domain Of Human Core 1e-09
3q71_A221 Human Parp14 (Artd8) - Macro Domain 2 In Complex Wi 2e-08
1vhu_A211 Crystal Structure Of A Putative Phosphoesterase Len 7e-08
1hjz_A192 Crystal Structure Of Af1521 Protein Containing A Ma 7e-08
2bfr_A192 The Macro Domain Is An Adp-Ribose Binding Module Le 8e-08
4gvw_A199 Three-Dimensional Structure Of The De Novo Designed 3e-07
3v45_A167 Crystal Structure Of De Novo Designed Serine Hydrol 3e-07
4ess_A167 Crystal Structure Of E6dL155R VARIANT OF DE NOVO DE 3e-07
4etj_A167 Crystal Structure Of E6h Variant Of De Novo Designe 3e-07
4gvv_A167 Crystal Structure Of De Novo Design Serine Hydrolas 9e-07
4etk_A167 Crystal Structure Of E6aL130DA155H VARIANT OF DE NO 9e-07
4abk_A183 Human Parp14 (Artd8, Bal2) - Macro Domain 3 In Comp 4e-06
2xd7_A193 Crystal Structure Of The Macro Domain Of Human Core 7e-06
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of Escherichia Coli, Northeast Structural Genomoics Target Er58 Length = 184 Back     alignment and structure 
Iteration: 1

 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 93/174 (53%), Gaps = 15/174 (8%)
Query: 13  KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGG-----FTAAAGPDLQKACYQIPEAQ 67
           KT + + +GDI++  VD     IV+  N  L  GG        AAGP L  AC ++ + Q
Sbjct: 2   KTRIHVVQGDITKLAVD----VIVNAANPSLXGGGGVDGAIHRAAGPALLDACLKVRQQQ 57
Query: 68  PRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPED-ILRSAYKNCLSVGKANNIQY 126
               CP G A IT    LP   V+HTVGPV+      ED +L+ AY N L +  AN+   
Sbjct: 58  GD--CPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTS 115
Query: 127 IAFPAISCGVSQYPPDEAATIAISTVKEFANDF---KEVHFILFTDDIYNVWLK 177
           +AFPAIS GV  YP   AA IA+ TV EF       ++V+F+ + ++  +++ +
Sbjct: 116 VAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYER 169
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1 Length = 235 Back     alignment and structure
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With Adenosine-5- Diphosphoribose Length = 214 Back     alignment and structure
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The Histone Variant Macroh2a1.1. Length = 193 Back     alignment and structure
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.1 (Form B) Length = 211 Back     alignment and structure
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein, Ttha0132 From Thermus Thermophilus Hb8 Length = 159 Back     alignment and structure
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.2 Length = 214 Back     alignment and structure
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With Adenosine-5- Diphosphoribose Length = 221 Back     alignment and structure
>pdb|1VHU|A Chain A, Crystal Structure Of A Putative Phosphoesterase Length = 211 Back     alignment and structure
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a Domain Length = 192 Back     alignment and structure
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module Length = 192 Back     alignment and structure
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine Hydrolase 2bfq_3, Northeast Structural Genomics Consortium (Nesg) Target Or248 Length = 199 Back     alignment and structure
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium Target Or130 Length = 167 Back     alignment and structure
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED SERINE Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or187 Length = 167 Back     alignment and structure
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or185 Length = 167 Back     alignment and structure
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase Osh55.27, Northeast Structural Genomics Consortium (Nesg) Target Or246 Length = 167 Back     alignment and structure
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO DESIGNED Serine Hydrolase, Northeast Structural Genomics Consortium (Nesg) Target Or186 Length = 167 Back     alignment and structure
>pdb|4ABK|A Chain A, Human Parp14 (Artd8, Bal2) - Macro Domain 3 In Complex With Adenosine-5-Diphosphoribose Length = 183 Back     alignment and structure
>pdb|2XD7|A Chain A, Crystal Structure Of The Macro Domain Of Human Core Histone H2a Length = 193 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
2xd7_A193 Core histone macro-H2A.2; chromosomal protein, nuc 2e-63
3q6z_A214 Poly [ADP-ribose] polymerase 14; structural genomi 4e-63
1spv_A184 Putative polyprotein/phosphatase; structural genom 8e-63
1yd9_A193 Core histone macro-H2A.1; alpha-beta structure, A1 8e-63
1vhu_A211 Hypothetical protein AF1521; structural genomics, 1e-60
2dx6_A159 Hypothetical protein TTHA0132; conserved hypotheti 7e-59
3q71_A221 Poly [ADP-ribose] polymerase 14; structural genomi 8e-59
2x47_A235 Macro domain-containing protein 1; signaling prote 2e-58
3kh6_A199 Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3 4e-55
3gpg_A168 NSP3, non-structural protein 3; macro domain, X do 7e-51
3ejf_A176 Non-structural protein 3; IBV, coronavirus, X-doma 9e-50
2acf_A182 Replicase polyprotein 1AB; ADRP domain, SARS NSP-3 1e-49
3ejg_A193 Non-structural protein 3; HCOV 229E, X-domain, mac 3e-49
3eti_A168 X (ADRP) domain, macro domain of non-structural pr 5e-49
3gqe_A168 Non-structural protein 3; macro domain, X domain, 6e-49
2vri_A174 Non-structural protein 3; RNA replication, nucleot 2e-46
1njr_A284 32.1 kDa protein in ADH3-RCA1 intergenic region; s 3e-28
2eee_A149 Uncharacterized protein C6ORF130; macro domain, A1 3e-09
2jyc_A160 Uncharacterized protein C6ORF130; macro domain, A1 4e-09
3sig_A277 PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1 6e-05
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Length = 193 Back     alignment and structure
 Score =  193 bits (492), Expect = 2e-63
 Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 14/177 (7%)

Query: 16  LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTA-----AAGPDLQKACYQIPEAQPRV 70
           L +++ DIS     R  + IV PT   + L          A G +  +   ++ ++Q   
Sbjct: 21  LSLTQSDISHIGSMRV-EGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGP- 78

Query: 71  RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 130
                EA ++    L    VIH   P +      E+ L    KNCLS  +   ++ +AFP
Sbjct: 79  -LEVAEAAVSQSSGLAAKFVIHCHIPQWGSD-KCEEQLEETIKNCLSAAEDKKLKSVAFP 136

Query: 131 AISCGVSQYPPDEAATIAISTVKEF-----ANDFKEVHFILFTDDIYNVWLKKAKEL 182
               G + +P   AA + +  +        A+  K V+F+LF  +   +++++  +L
Sbjct: 137 PFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIGIYVQEMAKL 193
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Length = 214 Back     alignment and structure
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Length = 184 Back     alignment and structure
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Length = 193 Back     alignment and structure
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Length = 211 Back     alignment and structure
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Length = 159 Back     alignment and structure
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Length = 221 Back     alignment and structure
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Length = 235 Back     alignment and structure
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Length = 168 Back     alignment and structure
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Length = 176 Back     alignment and structure
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Length = 182 Back     alignment and structure
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Length = 193 Back     alignment and structure
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Length = 168 Back     alignment and structure
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Length = 168 Back     alignment and structure
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Length = 174 Back     alignment and structure
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Length = 284 Back     alignment and structure
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A* Length = 149 Back     alignment and structure
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A Length = 277 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query185
3q6z_A214 Poly [ADP-ribose] polymerase 14; structural genomi 100.0
3q71_A221 Poly [ADP-ribose] polymerase 14; structural genomi 100.0
2xd7_A193 Core histone macro-H2A.2; chromosomal protein, nuc 100.0
1spv_A184 Putative polyprotein/phosphatase; structural genom 100.0
1yd9_A193 Core histone macro-H2A.1; alpha-beta structure, A1 100.0
4abl_A183 Poly [ADP-ribose] polymerase 14; transferase, PARP 100.0
2x47_A235 Macro domain-containing protein 1; signaling prote 100.0
3kh6_A199 Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3 100.0
1vhu_A211 Hypothetical protein AF1521; structural genomics, 100.0
2dx6_A159 Hypothetical protein TTHA0132; conserved hypotheti 100.0
3eti_A168 X (ADRP) domain, macro domain of non-structural pr 100.0
3gqe_A168 Non-structural protein 3; macro domain, X domain, 100.0
3gpg_A168 NSP3, non-structural protein 3; macro domain, X do 100.0
3ejg_A193 Non-structural protein 3; HCOV 229E, X-domain, mac 100.0
3ejf_A176 Non-structural protein 3; IBV, coronavirus, X-doma 100.0
2acf_A182 Replicase polyprotein 1AB; ADRP domain, SARS NSP-3 100.0
2vri_A174 Non-structural protein 3; RNA replication, nucleot 100.0
1njr_A284 32.1 kDa protein in ADH3-RCA1 intergenic region; s 100.0
4gua_A 670 Non-structural polyprotein; viral precursor polypr 100.0
2jyc_A160 Uncharacterized protein C6ORF130; macro domain, A1 99.96
2eee_A149 Uncharacterized protein C6ORF130; macro domain, A1 99.96
2fg1_A158 Conserved hypothetical protein BT1257; structural 99.94
3sig_A277 PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1 99.27
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.1e-48  Score=308.99  Aligned_cols=172  Identities=31%  Similarity=0.436  Sum_probs=158.6

Q ss_pred             EeeeCCCcEEEEEEccccccccCCCCcEEEEccCCCCCCCch-----hhhhCHHHHHHHhhccccCCCCCCCCCcEEEcc
Q 029924            7 TLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGF-----TAAAGPDLQKACYQIPEAQPRVRCPPGEARITP   81 (185)
Q Consensus         7 ~~~~~~~~~i~i~~GDI~~~~~~~~~D~IVn~an~~l~~~~g-----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~T~   81 (185)
                      .+.+.++.+|++++||||++++    |||||++|+.+.+++|     ++++|++|++||+++.+.  .+++++|++++|+
T Consensus        30 ~~~~~~g~~I~v~~GDIt~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~  103 (214)
T 3q6z_A           30 RTVLAPGVVLIVQQGDLARLPV----DVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKR--EGRLLPGNATISK  103 (214)
T ss_dssp             EEEEETTEEEEEEECCTTSCSS----SEEEEEECTTCCCCSHHHHHHHHHHCTHHHHHHHHHHHH--HCCCCTTCEEEEE
T ss_pred             EEEcCCCcEEEEEecccccCcC----CEEEeCCCCCCCCCchHHHHHHHhhhHHHHHHHHHHHHH--cCCCCCCeEEEEc
Confidence            4567789999999999999986    9999999999999998     899999999999987632  3589999999999


Q ss_pred             CCCCCCCeEEEecCCCcCCCCC--hHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHhc--
Q 029924           82 GFKLPVSHVIHTVGPVFNFHCN--PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN--  157 (185)
Q Consensus        82 ~~~L~~k~IiH~v~P~~~~~~~--~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~~--  157 (185)
                      +++|+||||||+|+|.|+.+..  +.+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|++  
T Consensus       104 ~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~~~  183 (214)
T 3q6z_A          104 AGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFK  183 (214)
T ss_dssp             CTTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTSSC
T ss_pred             CCCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999988652  467999999999999999999999999999999999999999999999999984  


Q ss_pred             ----CCCeEEEEecChHHHHHHHHHHHHHhc
Q 029924          158 ----DFKEVHFILFTDDIYNVWLKKAKELLQ  184 (185)
Q Consensus       158 ----~l~~V~~v~~~~~~~~~f~~~~~~~~~  184 (185)
                          .+++|+||+++++++++|+++++++|+
T Consensus       184 ~~~~~l~~V~fv~~d~~~~~~f~~~l~~~f~  214 (214)
T 3q6z_A          184 KDGHCLKEIYLVDVSEKTVEAFAEAVKTVFK  214 (214)
T ss_dssp             C--CCCCEEEEEESSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCCEEEEEeCCHHHHHHHHHHHHHhhC
Confidence                478999999999999999999999984
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Back     alignment and structure
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Back     alignment and structure
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Back     alignment and structure
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Back     alignment and structure
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A Back     alignment and structure
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Back     alignment and structure
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Back     alignment and structure
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Back     alignment and structure
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Back     alignment and structure
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Back     alignment and structure
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Back     alignment and structure
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Back     alignment and structure
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Back     alignment and structure
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Back     alignment and structure
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Back     alignment and structure
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Back     alignment and structure
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} Back     alignment and structure
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A* Back     alignment and structure
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A Back     alignment and structure
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 185
d1yd9a1188 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Ratt 6e-40
d1vhua_192 c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeo 1e-37
d1spva_172 c.50.1.2 (A:) Hypothetical protein YmbD {Escherich 9e-36
d2acfa1168 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SA 6e-32
d1njra_264 c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker' 9e-27
d2fg1a1154 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Ba 1e-17
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 188 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  132 bits (332), Expect = 6e-40
 Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 22/188 (11%)

Query: 10  FSTKT-----SLKISKGDISRWCVDRSSDAIVSPTNEILLLGG-----FTAAAGPDLQKA 59
            STK+      L++ + DI+    D    A+V PTN    +GG          G +  +A
Sbjct: 5   LSTKSLFLGQKLQVVQADIASIDSD----AVVHPTNTDFYIGGEVGSTLEKKGGKEFVEA 60

Query: 60  CYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVG 119
             ++ +           A ++ G  LP   VIH   PV+       ++L    KNCL++ 
Sbjct: 61  VLELRKKNGP--LEVAGAAVSAGHGLPAKFVIHCNSPVWGSDKCE-ELLEKTVKNCLALA 117

Query: 120 KANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF-----ANDFKEVHFILFTDDIYNV 174
               ++ IAFP+I  G + +P   AA + +  +  +     ++  K V+F+LF  +   +
Sbjct: 118 DDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGI 177

Query: 175 WLKKAKEL 182
           ++++  +L
Sbjct: 178 YVQEMAKL 185
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 192 Back     information, alignment and structure
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Length = 172 Back     information, alignment and structure
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Length = 168 Back     information, alignment and structure
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 264 Back     information, alignment and structure
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 154 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query185
d1yd9a1188 Histone macro-H2a1.1 {Rat (Rattus norvegicus) [Tax 100.0
d1spva_172 Hypothetical protein YmbD {Escherichia coli [TaxId 100.0
d1vhua_192 Hypothetical protein AF1521 {Archaeon Archaeoglobu 100.0
d2acfa1168 Replicase polyprotein 1ab {SARS coronavirus [TaxId 100.0
d1njra_264 Hypothetical protein Ymr087W {Baker's yeast (Sacch 99.96
d2fg1a1154 Hypothetical protein BT1257 {Bacteroides thetaiota 99.88
d1gyta1178 Leucine aminopeptidase (Aminopeptidase A), N-termi 96.32
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.9e-45  Score=283.98  Aligned_cols=169  Identities=26%  Similarity=0.483  Sum_probs=155.9

Q ss_pred             eeCCCcEEEEEEccccccccCCCCcEEEEccCCCCCCCch-----hhhhCHHHHHHHhhccccCCCCCCCCCcEEEccCC
Q 029924            9 SFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGF-----TAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGF   83 (185)
Q Consensus         9 ~~~~~~~i~i~~GDI~~~~~~~~~D~IVn~an~~l~~~~g-----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~T~~~   83 (185)
                      ++..+.+|+|++|||+++++    |||||++|+++.+++|     ++++|++|++||+++.++  .+++++|++++|++|
T Consensus         9 ~~~~~~~i~i~~GDIt~~~~----DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~--~~~~~~g~~~vT~~~   82 (188)
T d1yd9a1           9 SLFLGQKLQVVQADIASIDS----DAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEAVLELRKK--NGPLEVAGAAVSAGH   82 (188)
T ss_dssp             ECTTSCEEEEECSCGGGCCC----SEEEEECCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHH--HCSCCTTCEEEEECT
T ss_pred             ccccCCEEEEEeCCcCcCCC----CEEEECCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHh--ccccCCCCeeecccC
Confidence            34568999999999999986    9999999999999988     889999999999987643  357899999999999


Q ss_pred             CCCCCeEEEecCCCcCCCCChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHhc-----C
Q 029924           84 KLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN-----D  158 (185)
Q Consensus        84 ~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~~-----~  158 (185)
                      +|+|+||||+++|+|+.+ .+.+.|++||++||+.|++++++|||||+||||.+|||++++|++|++++++|+.     .
T Consensus        83 ~L~~k~IiH~v~P~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIafP~igtG~~g~p~~~~a~~~~~ai~~fl~~~~~~~  161 (188)
T d1yd9a1          83 GLPAKFVIHCNSPVWGSD-KCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSS  161 (188)
T ss_dssp             TSSSSEEEEECCCCTTST-THHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTCTTCC
T ss_pred             CCCceEEeeeccccCCCc-chHHHHHHHHHHHHHHHHHcCCCeEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            999999999999999876 4678999999999999999999999999999999999999999999999999984     5


Q ss_pred             CCeEEEEecChHHHHHHHHHHHHHhc
Q 029924          159 FKEVHFILFTDDIYNVWLKKAKELLQ  184 (185)
Q Consensus       159 l~~V~~v~~~~~~~~~f~~~~~~~~~  184 (185)
                      +++|+||+++++++++|+++|.++.+
T Consensus       162 l~~V~~v~~~~~~~~~f~~~l~ki~~  187 (188)
T d1yd9a1         162 IKTVYFVLFDSESIGIYVQEMAKLDA  187 (188)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTTC
T ss_pred             ccEEEEEeCCHHHHHHHHHHHHHHhc
Confidence            78999999999999999999988764
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Back     information, alignment and structure
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1gyta1 c.50.1.1 (A:1-178) Leucine aminopeptidase (Aminopeptidase A), N-terminal domain {Escherichia coli, PepA [TaxId: 562]} Back     information, alignment and structure