Citrus Sinensis ID: 029942

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MTKHFELSEKLTTVDASIFVCGLFLCLNAECNSMRIRLKKTFFLQVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS
Secondary Structure (PSIPRED)
ccccccHHHHHHccccEEEEEEEEcHHHHHHccccccccccHHHHHHHHHHHHccccccccEEEcccccccccccccHHHHHHccHHHHHHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEcccccccccccccEEEEEEccccccccEEEEcccccHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccEccccccccccccccHHHHHHHcccHHHHHHHHHHHHHccEEEEEEEEEEccccEEEEEEEEEEcccHHHcccccEEEEEEEEccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mtkhfelseklttvdASIFVCGLFLCLNAECNSMRIRLKKTFFLQVIILARESGLklelsdlpvrsfvpeplkaCASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRrykrdhpfaqlsgsdnIIAFTTkrykeqplivrgpgagaqvtaggIFSDILRLASYLGAPS
Flexible Loop (DISEMBL)
mtkhfelseklttvdaSIFVCGLFLCLNAECNSMRIRLKKTFFLQVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAedagevlryvgvvdainKEGRVELRrykrdhpfaqlsgsdniIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS
Low Complexity Region (SEG)
MTKHFELSEKLTTVDASIFVCGLFLCLNAECNSMRIRLKKTFFLQVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS
Disordered region (IsUnstruct)
*********KLTTVDASIFVCGLFLCLNAECNSMRIRLKKTFFLQVIILARESGLKLELSDLPVRSFVPEPLKAC***************************GEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL****
Disordered Region (DISOPRED)
**KHFELSEKLTTVDASIFVCGLFLCLNAECNSMRIRLKKTFFLQVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLG***
Disordered Region (DISEMBL)
********EKLTTVDASIFVCGLFLCLNAECNSMRIRLKKTFFLQVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKE**********AGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS
Disordered Region (DISPRO)
****FELSEKLTTVDASIFVCGLFLCLNAECNSMRIRLKKTFFLQVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGA**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTKHFELSEKLTTVDASIFVCGLFLCLNAECNSMRIRLKKTFFLQVIILARESGLKLELSDLPVRSFVPEPLKACASxxxxxxxxxxxxxxxxxxxxxAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q9SA18	911	Bifunctional aspartokinas	yes	no	0.762	0.154	0.829	3e-65
O81852	916	Bifunctional aspartokinas	no	no	0.762	0.153	0.801	8e-65
P49080	917	Bifunctional aspartokinas	N/A	no	0.762	0.153	0.765	2e-63
P49079	920	Bifunctional aspartokinas	N/A	no	0.762	0.153	0.773	3e-62
P37142	921	Bifunctional aspartokinas	N/A	no	0.762	0.153	0.758	4e-61
O94671	376	Probable homoserine dehyd	yes	no	0.594	0.292	0.522	4e-28
Q5B998	368	Homoserine dehydrogenase	yes	no	0.767	0.385	0.431	9e-28
P27725	819	Bifunctional aspartokinas	N/A	no	0.713	0.161	0.413	1e-24
P44505	815	Bifunctional aspartokinas	yes	no	0.691	0.157	0.425	1e-22
P31116	359	Homoserine dehydrogenase	yes	no	0.735	0.378	0.420	1e-21

>sp|Q9SA18|AKH1_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH1 PE=1 SV=1

 Score =  247 bits (631), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 117/141 (82%), Positives = 133/141 (94%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +V ILARESGLKL+L  LPV++ VP+PL+ACASAEEFM++LPQFD+EL+KQR+EAE AGE
Sbjct: 771 KVTILARESGLKLDLEGLPVQNLVPKPLQACASAEEFMEKLPQFDEELSKQREEAEAAGE 830

Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
           VLRYVGVVDA+ K+G VEL+RYK+DHPFAQLSG+DNIIAFTTKRYKEQPLIVRGPGAGAQ
Sbjct: 831 VLRYVGVVDAVEKKGTVELKRYKKDHPFAQLSGADNIIAFTTKRYKEQPLIVRGPGAGAQ 890

Query: 165 VTAGGIFSDILRLASYLGAPS 185
           VTAGGIFSDILRLA YLGAPS
Sbjct: 891 VTAGGIFSDILRLAFYLGAPS 911

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3

>sp|O81852|AKH2_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH2 PE=1 SV=1

 Score =  246 bits (627), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 113/141 (80%), Positives = 132/141 (93%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +VIILARESGLKL+L+DLP+RS VPEPLK C S EEFM++LPQ+D +LAK+R +AE++GE
Sbjct: 776 KVIILARESGLKLDLADLPIRSLVPEPLKGCTSVEEFMEKLPQYDGDLAKERLDAENSGE 835

Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
           VLRYVGVVDA+N++G VELRRYK++HPFAQL+GSDNIIAFTT RYK+ PLIVRGPGAGAQ
Sbjct: 836 VLRYVGVVDAVNQKGTVELRRYKKEHPFAQLAGSDNIIAFTTTRYKDHPLIVRGPGAGAQ 895

Query: 165 VTAGGIFSDILRLASYLGAPS 185
           VTAGGIFSDILRLASYLGAPS
Sbjct: 896 VTAGGIFSDILRLASYLGAPS 916

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P49080|AKH2_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Zea mays GN=AKHSDH2 PE=2 SV=1

 Score =  241 bits (614), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 108/141 (76%), Positives = 130/141 (92%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +V++LARESGL+LELSD+PV+S VPE L +C+SA+EFM++LP FD++ A+QR +AE AGE
Sbjct: 777 KVVVLARESGLRLELSDIPVKSLVPETLASCSSADEFMQKLPSFDEDWARQRSDAEAAGE 836

Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
           VLRYVG +DA+N+ G+VELRRY+RDHPFAQLSGSDNIIAFTT RYKEQPLIVRGPGAGA+
Sbjct: 837 VLRYVGALDAVNRSGQVELRRYRRDHPFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAE 896

Query: 165 VTAGGIFSDILRLASYLGAPS 185
           VTAGG+F DILRLASYLGAPS
Sbjct: 897 VTAGGVFCDILRLASYLGAPS 917

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P49079|AKH1_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Zea mays GN=AKHSDH1 PE=2 SV=1

 Score =  237 bits (605), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 109/141 (77%), Positives = 129/141 (91%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +VIILARESGL LELSD+PVRS VPE LK+C SA+E+M++LP FD++ A++R+ AE AGE
Sbjct: 780 KVIILARESGLGLELSDIPVRSLVPEALKSCTSADEYMQKLPSFDEDWARERKNAEAAGE 839

Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
           VLRYVGVVD ++K+G+VELR YKRDHPFAQLSGSDNIIAFTT RYK+QPLIVRGPGAGA+
Sbjct: 840 VLRYVGVVDVVSKKGQVELRAYKRDHPFAQLSGSDNIIAFTTSRYKDQPLIVRGPGAGAE 899

Query: 165 VTAGGIFSDILRLASYLGAPS 185
           VTAGG+F DILRL+SYLGAPS
Sbjct: 900 VTAGGVFCDILRLSSYLGAPS 920

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P37142|AKH_DAUCA Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic (Fragment) OS=Daucus carota PE=1 SV=1

 Score =  233 bits (595), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 107/141 (75%), Positives = 130/141 (92%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +VIILAR SGLKLELSD+PV+S VPEPL+  ASAEEF+ QLPQFD ++ ++R++AE+AGE
Sbjct: 781 KVIILARGSGLKLELSDIPVQSLVPEPLRGIASAEEFLLQLPQFDSDMTRKREDAENAGE 840

Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
           VLRYVGVVDA+N++G VEL+RYK++HPFAQLSGSDNI AFTT+RY +QP I+RGPGAGA+
Sbjct: 841 VLRYVGVVDAVNQKGVVELKRYKKEHPFAQLSGSDNINAFTTERYNKQPPIIRGPGAGAE 900

Query: 165 VTAGGIFSDILRLASYLGAPS 185
           VTAGG+FSDILRLASYLGAPS
Sbjct: 901 VTAGGVFSDILRLASYLGAPS 921

Daucus carota (taxid: 4039)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|O94671|DHOM_SCHPO Probable homoserine dehydrogenase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC776.03 PE=1 SV=1

 Score =  124 bits (310), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 58/111 (52%), Positives = 76/111 (68%), Gaps = 1/111 (0%)

Query: 45  QVIILARESGLKLE-LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAG 103
           +V IL+R +G+ +E  S  PV+S +PEPLK+  +AEEF+  LP FD E A  R+EAE  G
Sbjct: 231 KVTILSRIAGVHVESASSFPVKSLIPEPLKSAVNAEEFLAGLPNFDSEFASMREEAEKEG 290

Query: 104 EVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPL 154
           +V+R+VG  D  NK   V+L +Y   HPFA L  SDNII+FTTKRY  +PL
Sbjct: 291 KVVRFVGEADVANKTTLVKLEKYDASHPFANLQSSDNIISFTTKRYHTRPL 341

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q5B998|DHOM_EMENI Homoserine dehydrogenase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN2882 PE=1 SV=1

 Score =  122 bits (307), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 96/153 (62%), Gaps = 11/153 (7%)

Query: 30  ECNSMRIRLKKTFFLQVIILARESGLKLELSD-LPVRSFVPEPLKACASAEE----FMKQ 84
           + N M +  K T      ILAR +GL ++  D  P+ S +P  L +  S+ +    FM +
Sbjct: 218 DLNGMDVARKLT------ILARIAGLDVQSPDSFPIESLIPAELTSLPSSADGIAQFMAR 271

Query: 85  LPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAF 144
           LP+FD ++A  ++ AE AG+V+RYVG VD   KE RV L+++ +D   A L GSDNII+F
Sbjct: 272 LPEFDSQMAAIKEGAEKAGKVVRYVGSVDVAKKEVRVGLQQFDKDSAIAGLKGSDNIISF 331

Query: 145 TTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRL 177
            T+RY   PLIV+G GAG  VTA G+ +D+L++
Sbjct: 332 YTRRYGSNPLIVQGAGAGGDVTAMGVTADLLKV 364

Involved in osmoadaptation.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P27725|AK1H_SERMA Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Serratia marcescens GN=thrA PE=3 SV=1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 87/138 (63%), Gaps = 6/138 (4%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +++ILARE+G KLELSD+ V   +P    A    + F+ +LP+ DKE A+    A + G+
Sbjct: 682 KLLILAREAGYKLELSDIEVEPVLPPSFDASGDVDTFLARLPELDKEFARNVANAAEQGK 741

Query: 105 VLRYVGVVDAINKEGRVELRRYKRD--HPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAG 162
           VLRYVG++D    EGR ++R    D   P  ++   +N +AF ++ Y+  PL++RG GAG
Sbjct: 742 VLRYVGLID----EGRCKVRIEAVDGNDPLYKVKNGENALAFYSRYYQPLPLVLRGYGAG 797

Query: 163 AQVTAGGIFSDILRLASY 180
             VTA G+F+D+LR  S+
Sbjct: 798 NDVTAAGVFADLLRTLSW 815

Serratia marcescens (taxid: 615)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P44505|AKH_HAEIN Bifunctional aspartokinase/homoserine dehydrogenase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=thrA PE=3 SV=1

 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 85/134 (63%), Gaps = 6/134 (4%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +++ILARE+G++LELSD+ V   +P+      SA+EFM  LPQ D+E   +   A+  G+
Sbjct: 682 KLLILAREAGIELELSDVEVEGVLPKGFSDGKSADEFMAMLPQLDEEFKTRVATAKAEGK 741

Query: 105 VLRYVGVVDAINKEG--RVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAG 162
           VLRYVG +     EG  +V +     ++P  ++   +N +AF T+ Y+  PL++RG GAG
Sbjct: 742 VLRYVGKI----SEGKCKVSIVAVDLNNPLYKVKDGENALAFYTRYYQPIPLLLRGYGAG 797

Query: 163 AQVTAGGIFSDILR 176
             VTA GIF+DILR
Sbjct: 798 NAVTAAGIFADILR 811

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P31116|DHOM_YEAST Homoserine dehydrogenase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HOM6 PE=1 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 94/138 (68%), Gaps = 2/138 (1%)

Query: 45  QVIILARESGLKLEL-SDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAG 103
           +V I+ R SG+++E  +  PV+S +P+PL++  SA+EF+++L  +DK+L + ++EA    
Sbjct: 223 KVTIVGRISGVEVESPTSFPVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATEN 282

Query: 104 EVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGA 163
           +VLR++G VD   K   V + +Y   HPFA L GSDN+I+  TKRY   P++++G GAGA
Sbjct: 283 KVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTKRY-TNPVVIQGAGAGA 341

Query: 164 QVTAGGIFSDILRLASYL 181
            VTA G+  D++++A  L
Sbjct: 342 AVTAAGVLGDVIKIAQRL 359

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
224145045	829	predicted protein [Populus trichocarpa]	0.762	0.170	0.858	2e-67
255569084	920	aspartate kinase, putative [Ricinus comm	0.762	0.153	0.843	3e-66
297740938	871	unnamed protein product [Vitis vinifera]	0.762	0.161	0.843	3e-65
225460063	918	PREDICTED: bifunctional aspartokinase/ho	0.762	0.153	0.843	3e-65
147856217	841	hypothetical protein VITISV_034964 [Viti	0.762	0.167	0.843	3e-65
297804164	921	AK-HSDH/AK-HSDH II [Arabidopsis lyrata s	0.762	0.153	0.822	2e-64
357518663	909	Bifunctional aspartokinase/homoserine de	0.762	0.155	0.815	3e-64
357518661	917	Bifunctional aspartokinase/homoserine de	0.762	0.153	0.815	3e-64
224136137	843	predicted protein [Populus trichocarpa]	0.762	0.167	0.836	3e-64
351721667	916	aspartokinase-homoserine dehydrogenase [	0.762	0.153	0.822	5e-64

>gi|224145045|ref|XP_002325506.1| predicted protein [Populus trichocarpa] gi|222862381|gb|EEE99887.1| predicted protein [Populus trichocarpa]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/141 (85%), Positives = 137/141 (97%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +VIILARESGLKLELSD+PV+S VP+PL+A AS EE+M++LPQFD E+A++RQEAEDAG+
Sbjct: 689 KVIILARESGLKLELSDIPVQSLVPQPLRASASVEEYMQRLPQFDSEMARERQEAEDAGD 748

Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
           VLRYVGVVDA+++EGRVELRRYK+DHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ
Sbjct: 749 VLRYVGVVDAVSEEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 808

Query: 165 VTAGGIFSDILRLASYLGAPS 185
           VTAGGIFSDILRLASYLGAPS
Sbjct: 809 VTAGGIFSDILRLASYLGAPS 829

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569084|ref|XP_002525511.1| aspartate kinase, putative [Ricinus communis] gi|223535190|gb|EEF36869.1| aspartate kinase, putative [Ricinus communis]

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 119/141 (84%), Positives = 134/141 (95%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +VIILARESGL+LELSD+PVRS VPEPL+A ASAEEFM +LP+FD+E+AK+RQE+EDAG+
Sbjct: 780 KVIILARESGLRLELSDIPVRSLVPEPLRASASAEEFMTELPKFDQEMAKERQESEDAGD 839

Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
           VLRYVGVVD + +EGRVELRRYK+DH FAQLSGSDNIIAFTT RYKEQPLIVRGPGAGAQ
Sbjct: 840 VLRYVGVVDVVRQEGRVELRRYKKDHAFAQLSGSDNIIAFTTTRYKEQPLIVRGPGAGAQ 899

Query: 165 VTAGGIFSDILRLASYLGAPS 185
           VTAGGIFSD+LRLASYLGAPS
Sbjct: 900 VTAGGIFSDVLRLASYLGAPS 920

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740938|emb|CBI31250.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/141 (84%), Positives = 132/141 (93%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +VIILARESGLKLEL+D PV+S VPEPL+A ASA+EFM+QLPQ+D++LAKQ Q+AEDAGE
Sbjct: 731 KVIILARESGLKLELADTPVQSLVPEPLRATASADEFMQQLPQYDEDLAKQLQDAEDAGE 790

Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
           VLRYVGVVD +NK+G VELRRYK DHPFAQLSGSDNIIAFTT RYK QPLIVRGPGAGAQ
Sbjct: 791 VLRYVGVVDVVNKKGLVELRRYKNDHPFAQLSGSDNIIAFTTARYKNQPLIVRGPGAGAQ 850

Query: 165 VTAGGIFSDILRLASYLGAPS 185
           VTAGGIFSD+LRLASYLGAPS
Sbjct: 851 VTAGGIFSDVLRLASYLGAPS 871

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460063|ref|XP_002271525.1| PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic-like [Vitis vinifera]

 Score =  253 bits (645), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/141 (84%), Positives = 132/141 (93%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +VIILARESGLKLEL+D PV+S VPEPL+A ASA+EFM+QLPQ+D++LAKQ Q+AEDAGE
Sbjct: 778 KVIILARESGLKLELADTPVQSLVPEPLRATASADEFMQQLPQYDEDLAKQLQDAEDAGE 837

Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
           VLRYVGVVD +NK+G VELRRYK DHPFAQLSGSDNIIAFTT RYK QPLIVRGPGAGAQ
Sbjct: 838 VLRYVGVVDVVNKKGLVELRRYKNDHPFAQLSGSDNIIAFTTARYKNQPLIVRGPGAGAQ 897

Query: 165 VTAGGIFSDILRLASYLGAPS 185
           VTAGGIFSD+LRLASYLGAPS
Sbjct: 898 VTAGGIFSDVLRLASYLGAPS 918

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856217|emb|CAN82421.1| hypothetical protein VITISV_034964 [Vitis vinifera]

 Score =  253 bits (645), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/141 (84%), Positives = 132/141 (93%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +VIILARESGLKLEL+D PV+S VPEPL+A ASA+EFM+QLPQ+D++LAKQ Q+AEDAGE
Sbjct: 701 KVIILARESGLKLELADTPVQSLVPEPLRATASADEFMQQLPQYDEDLAKQLQDAEDAGE 760

Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
           VLRYVGVVD +NK+G VELRRYK DHPFAQLSGSDNIIAFTT RYK QPLIVRGPGAGAQ
Sbjct: 761 VLRYVGVVDVVNKKGLVELRRYKNDHPFAQLSGSDNIIAFTTARYKNQPLIVRGPGAGAQ 820

Query: 165 VTAGGIFSDILRLASYLGAPS 185
           VTAGGIFSD+LRLASYLGAPS
Sbjct: 821 VTAGGIFSDVLRLASYLGAPS 841

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804164|ref|XP_002869966.1| AK-HSDH/AK-HSDH II [Arabidopsis lyrata subsp. lyrata] gi|297315802|gb|EFH46225.1| AK-HSDH/AK-HSDH II [Arabidopsis lyrata subsp. lyrata]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 116/141 (82%), Positives = 133/141 (94%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +VIILARESGLKL+LSDLP+RS VPEPLK C SAEEFM++LPQ+D +LAK+R EAE++GE
Sbjct: 781 KVIILARESGLKLDLSDLPIRSLVPEPLKGCTSAEEFMEKLPQYDGDLAKERLEAENSGE 840

Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
           VLRYVGVVDA+N++G VELRRYK++HPFAQL+GSDNIIAFTT RYK+ PLIVRGPGAGAQ
Sbjct: 841 VLRYVGVVDAVNQKGTVELRRYKKEHPFAQLAGSDNIIAFTTTRYKDHPLIVRGPGAGAQ 900

Query: 165 VTAGGIFSDILRLASYLGAPS 185
           VTAGGIFSDILRLASYLGAPS
Sbjct: 901 VTAGGIFSDILRLASYLGAPS 921

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518663|ref|XP_003629620.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula] gi|355523642|gb|AET04096.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula]

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/141 (81%), Positives = 134/141 (95%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +VIILARESGLKLELS++P+ S VPEPL+ACASA+EFM+QLP+FD+E AK++++A++AGE
Sbjct: 769 KVIILARESGLKLELSNIPIESLVPEPLRACASAQEFMQQLPKFDQEFAKKQEDADNAGE 828

Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
           VLRYVGVVD  NK+G VELR+YK+DHPFAQLSGSDNIIAFTT+RYK QPLIVRGPGAGAQ
Sbjct: 829 VLRYVGVVDVTNKKGVVELRKYKKDHPFAQLSGSDNIIAFTTRRYKNQPLIVRGPGAGAQ 888

Query: 165 VTAGGIFSDILRLASYLGAPS 185
           VTAGGIFSDILRLASYLGAPS
Sbjct: 889 VTAGGIFSDILRLASYLGAPS 909

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518661|ref|XP_003629619.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula] gi|355523641|gb|AET04095.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula]

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/141 (81%), Positives = 134/141 (95%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +VIILARESGLKLELS++P+ S VPEPL+ACASA+EFM+QLP+FD+E AK++++A++AGE
Sbjct: 777 KVIILARESGLKLELSNIPIESLVPEPLRACASAQEFMQQLPKFDQEFAKKQEDADNAGE 836

Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
           VLRYVGVVD  NK+G VELR+YK+DHPFAQLSGSDNIIAFTT+RYK QPLIVRGPGAGAQ
Sbjct: 837 VLRYVGVVDVTNKKGVVELRKYKKDHPFAQLSGSDNIIAFTTRRYKNQPLIVRGPGAGAQ 896

Query: 165 VTAGGIFSDILRLASYLGAPS 185
           VTAGGIFSDILRLASYLGAPS
Sbjct: 897 VTAGGIFSDILRLASYLGAPS 917

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136137|ref|XP_002327390.1| predicted protein [Populus trichocarpa] gi|222835760|gb|EEE74195.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (636), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 118/141 (83%), Positives = 133/141 (94%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +VIILARE+GLKLELSD+PV+S VPEPL+A ASAEEFM+QLPQFD E+A+ RQEAEDAG+
Sbjct: 703 KVIILARETGLKLELSDIPVQSLVPEPLRASASAEEFMQQLPQFDNEMARARQEAEDAGD 762

Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
           VLRYVGVVDA +++G VELRRYK+DHPFAQL+GSDNIIAFTT RYK+QPLIVRGPGAGAQ
Sbjct: 763 VLRYVGVVDAESQQGLVELRRYKKDHPFAQLAGSDNIIAFTTTRYKKQPLIVRGPGAGAQ 822

Query: 165 VTAGGIFSDILRLASYLGAPS 185
           VTAGGIFSDIL LASYLGAPS
Sbjct: 823 VTAGGIFSDILLLASYLGAPS 843

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721667|ref|NP_001237473.1| aspartokinase-homoserine dehydrogenase [Glycine max] gi|2970447|gb|AAC05981.1| aspartokinase-homoserine dehydrogenase [Glycine max]

 Score =  249 bits (635), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 116/141 (82%), Positives = 134/141 (95%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           +VIILARESGLKLELS++PV S VPEPL+ACASA+EFM++LP+FD+E  K++++AE+AGE
Sbjct: 776 KVIILARESGLKLELSNIPVESPVPEPLRACASAQEFMQELPKFDQEFTKKQEDAENAGE 835

Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
           VLRYVGVVD  NK+G VELRRYK+DHPFAQLSGSDNIIAFTT+RYK+QPLIVRGPGAGAQ
Sbjct: 836 VLRYVGVVDVTNKKGVVELRRYKKDHPFAQLSGSDNIIAFTTRRYKDQPLIVRGPGAGAQ 895

Query: 165 VTAGGIFSDILRLASYLGAPS 185
           VTAGGIFSDILRLASYLGAPS
Sbjct: 896 VTAGGIFSDILRLASYLGAPS 916

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2029564	911	AK-HSDH I "aspartate kinase-ho	0.762	0.154	0.829	2.6e-58
TAIR|locus:2133995	916	AK-HSDH II "aspartate kinase-h	0.762	0.153	0.801	2.1e-57
POMBASE|SPBC776.03	376	SPBC776.03 "homoserine dehydro	0.751	0.369	0.507	3.2e-33
UNIPROTKB|G4NCU5	370	MGG_11450 "Homoserine dehydrog	0.718	0.359	0.455	1.6e-29
SGD|S000003900	359	HOM6 "Homoserine dehydrogenase	0.735	0.378	0.420	1.3e-27
CGD|CAL0006049	359	HOM6 [Candida albicans (taxid:	0.718	0.370	0.451	1.9e-26
ASPGD|ASPL0000040676	368	AN2882 [Emericella nidulans (t	0.740	0.372	0.450	5.2e-26
UNIPROTKB|Q9KNP7	803	VC_2684 "Aspartokinase II/homo	0.729	0.168	0.416	8.1e-22
TIGR_CMR|VC_2684	803	VC_2684 "aspartokinase II/homo	0.729	0.168	0.416	8.1e-22
TIGR_CMR|SO_3415	822	SO_3415 "aspartokinase I/homos	0.713	0.160	0.420	2.9e-21

TAIR|locus:2029564 AK-HSDH I "aspartate kinase-homoserine dehydrogenase i" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 2.6e-58, P = 2.6e-58
 Identities = 117/141 (82%), Positives = 133/141 (94%)

Query:    45 QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
             +V ILARESGLKL+L  LPV++ VP+PL+ACASAEEFM++LPQFD+EL+KQR+EAE AGE
Sbjct:   771 KVTILARESGLKLDLEGLPVQNLVPKPLQACASAEEFMEKLPQFDEELSKQREEAEAAGE 830

Query:   105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
             VLRYVGVVDA+ K+G VEL+RYK+DHPFAQLSG+DNIIAFTTKRYKEQPLIVRGPGAGAQ
Sbjct:   831 VLRYVGVVDAVEKKGTVELKRYKKDHPFAQLSGADNIIAFTTKRYKEQPLIVRGPGAGAQ 890

Query:   165 VTAGGIFSDILRLASYLGAPS 185
             VTAGGIFSDILRLA YLGAPS
Sbjct:   891 VTAGGIFSDILRLAFYLGAPS 911

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009067 "aspartate family amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2133995 AK-HSDH II "aspartate kinase-homoserine dehydrogenase ii" [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 2.1e-57, P = 2.1e-57
 Identities = 113/141 (80%), Positives = 132/141 (93%)

Query:    45 QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
             +VIILARESGLKL+L+DLP+RS VPEPLK C S EEFM++LPQ+D +LAK+R +AE++GE
Sbjct:   776 KVIILARESGLKLDLADLPIRSLVPEPLKGCTSVEEFMEKLPQYDGDLAKERLDAENSGE 835

Query:   105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
             VLRYVGVVDA+N++G VELRRYK++HPFAQL+GSDNIIAFTT RYK+ PLIVRGPGAGAQ
Sbjct:   836 VLRYVGVVDAVNQKGTVELRRYKKEHPFAQLAGSDNIIAFTTTRYKDHPLIVRGPGAGAQ 895

Query:   165 VTAGGIFSDILRLASYLGAPS 185
             VTAGGIFSDILRLASYLGAPS
Sbjct:   896 VTAGGIFSDILRLASYLGAPS 916

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009067 "aspartate family amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

POMBASE|SPBC776.03 SPBC776.03 "homoserine dehydrogenase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 71/140 (50%), Positives = 96/140 (68%)

Query:    45 QVIILARESGLKLE-LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAG 103
             +V IL+R +G+ +E  S  PV+S +PEPLK+  +AEEF+  LP FD E A  R+EAE  G
Sbjct:   231 KVTILSRIAGVHVESASSFPVKSLIPEPLKSAVNAEEFLAGLPNFDSEFASMREEAEKEG 290

Query:   104 EVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGA 163
             +V+R+VG  D  NK   V+L +Y   HPFA L  SDNII+FTTKRY  +PL+V G GAGA
Sbjct:   291 KVVRFVGEADVANKTTLVKLEKYDASHPFANLQSSDNIISFTTKRYHTRPLVVIGAGAGA 350

Query:   164 QVTAGGIFSDILRLASYLGA 183
              VTA G+  D++++ S + A
Sbjct:   351 AVTAAGVLGDMIKIMSQVRA 370

GO:0004412 "homoserine dehydrogenase activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0009086 "methionine biosynthetic process" evidence=ISO

GO:0009088 "threonine biosynthetic process" evidence=ISO

GO:0009090 "homoserine biosynthetic process" evidence=ISO

GO:0009097 "isoleucine biosynthetic process" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

UNIPROTKB|G4NCU5 MGG_11450 "Homoserine dehydrogenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 61/134 (45%), Positives = 96/134 (71%)

Query:    45 QVIILARESGLKLEL-SDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAG 103
             ++ ILAR +GL++E  +  PV+S +P+ L++ AS +EF+++LP+FD E+ + +  AE  G
Sbjct:   232 KLTILARLAGLEVESPTSFPVQSLIPKALESAASGDEFLQRLPEFDSEMEEVKTAAEKEG 291

Query:   104 EVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGA 163
             +V+R+VG +D  NK+ +V L ++ R HP A L GSDNII+F TKRY   PLI++G GAG 
Sbjct:   292 KVVRFVGSIDVANKQVKVGLEKFDRSHPIAALKGSDNIISFYTKRYGSNPLIIQGAGAGG 351

Query:   164 QVTAGGIFSDILRL 177
              VTA G+  D++++
Sbjct:   352 DVTAMGVTGDLIKV 365

GO:0005575 "cellular_component" evidence=ND

SGD|S000003900 HOM6 "Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 58/138 (42%), Positives = 94/138 (68%)

Query:    45 QVIILARESGLKLEL-SDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAG 103
             +V I+ R SG+++E  +  PV+S +P+PL++  SA+EF+++L  +DK+L + ++EA    
Sbjct:   223 KVTIVGRISGVEVESPTSFPVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATEN 282

Query:   104 EVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGA 163
             +VLR++G VD   K   V + +Y   HPFA L GSDN+I+  TKRY   P++++G GAGA
Sbjct:   283 KVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTKRYTN-PVVIQGAGAGA 341

Query:   164 QVTAGGIFSDILRLASYL 181
              VTA G+  D++++A  L
Sbjct:   342 AVTAAGVLGDVIKIAQRL 359

GO:0009086 "methionine biosynthetic process" evidence=IEA;IMP

GO:0009088 "threonine biosynthetic process" evidence=IEA;IMP

GO:0009090 "homoserine biosynthetic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;ISS;IDA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA

GO:0009097 "isoleucine biosynthetic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

CGD|CAL0006049 HOM6 [Candida albicans (taxid:5476)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 61/135 (45%), Positives = 90/135 (66%)

Query:    45 QVIILARESGLKLE-LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAG 103
             +V ILAR SGL++E  +  PV S +P+ L+   S  EFM++LP +D ++ K + EA    
Sbjct:   221 KVTILARISGLEVEGPTSFPVESLIPKELECVESVAEFMEKLPNYDADIQKVKDEAFAEN 280

Query:   104 EVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGA 163
             +VLR+VG VD    +  VE+ +Y  DHPFA L GSDN+++  T RY   PLIV+G GAGA
Sbjct:   281 KVLRFVGKVDLNTNKVSVEIGKYGFDHPFASLKGSDNVVSIKTGRYPN-PLIVQGAGAGA 339

Query:   164 QVTAGGIFSDILRLA 178
             ++TA G+ +D +++A
Sbjct:   340 EITAHGVLADTIKIA 354

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009090 "homoserine biosynthetic process" evidence=IEA

GO:0009088 "threonine biosynthetic process" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA

ASPGD|ASPL0000040676 AN2882 [Emericella nidulans (taxid:162425)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 64/142 (45%), Positives = 95/142 (66%)

Query:    45 QVIILARESGLKLELSD-LPVRSFVPEPLKAC-ASAE---EFMKQLPQFDKELAKQRQEA 99
             ++ ILAR +GL ++  D  P+ S +P  L +  +SA+   +FM +LP+FD ++A  ++ A
Sbjct:   227 KLTILARIAGLDVQSPDSFPIESLIPAELTSLPSSADGIAQFMARLPEFDSQMAAIKEGA 286

Query:   100 EDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGP 159
             E AG+V+RYVG VD   KE RV L+++ +D   A L GSDNII+F T+RY   PLIV+G 
Sbjct:   287 EKAGKVVRYVGSVDVAKKEVRVGLQQFDKDSAIAGLKGSDNIISFYTRRYGSNPLIVQGA 346

Query:   160 GAGAQVTAGGIFSDILRLASYL 181
             GAG  VTA G+ +D+L++   L
Sbjct:   347 GAGGDVTAMGVTADLLKVIERL 368

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;RCA

GO:0006520 "cellular amino acid metabolic process" evidence=RCA

GO:0009090 "homoserine biosynthetic process" evidence=IEA

GO:0009088 "threonine biosynthetic process" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0071470 "cellular response to osmotic stress" evidence=IEP

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

UNIPROTKB|Q9KNP7 VC_2684 "Aspartokinase II/homoserine dehydrogenase, methionine-sensitive" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 265 (98.3 bits), Expect = 8.1e-22, P = 8.1e-22
 Identities = 57/137 (41%), Positives = 89/137 (64%)

Query:    45 QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
             +++ILARESGL++E  ++ V S VP  L++  S ++F+      +++LA++   A+  G+
Sbjct:   669 KLVILARESGLEIEPQNVKVESLVPAELRS-VSLDDFLDNSKLLNEQLAERLARAQKQGK 727

Query:   105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
             VLRYV  ++  N +  V +   ++DHP A L   DNI A  +K Y++ PL++RGPGAG +
Sbjct:   728 VLRYVARLEK-NGKASVGVEALEQDHPLANLLPCDNIFAIESKWYRDNPLVIRGPGAGRE 786

Query:   165 VTAGGIFSDILRLASYL 181
             VTAG I SD+  LAS L
Sbjct:   787 VTAGAIQSDLNLLASLL 803

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|VC_2684 VC_2684 "aspartokinase II/homoserine dehydrogenase, methionine-sensitive" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 265 (98.3 bits), Expect = 8.1e-22, P = 8.1e-22
 Identities = 57/137 (41%), Positives = 89/137 (64%)

Query:    45 QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
             +++ILARESGL++E  ++ V S VP  L++  S ++F+      +++LA++   A+  G+
Sbjct:   669 KLVILARESGLEIEPQNVKVESLVPAELRS-VSLDDFLDNSKLLNEQLAERLARAQKQGK 727

Query:   105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
             VLRYV  ++  N +  V +   ++DHP A L   DNI A  +K Y++ PL++RGPGAG +
Sbjct:   728 VLRYVARLEK-NGKASVGVEALEQDHPLANLLPCDNIFAIESKWYRDNPLVIRGPGAGRE 786

Query:   165 VTAGGIFSDILRLASYL 181
             VTAG I SD+  LAS L
Sbjct:   787 VTAGAIQSDLNLLASLL 803

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|SO_3415 SO_3415 "aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 260 (96.6 bits), Expect = 2.9e-21, P = 2.9e-21
 Identities = 58/138 (42%), Positives = 85/138 (61%)

Query:    45 QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
             +V+ILARE GLKLELSD+ V S +PE        E FM +LP+ D  +A +  EA+  G+
Sbjct:   683 KVLILAREVGLKLELSDIVVDSVLPESFDDSGDVESFMARLPEADAAIAARVAEAKAQGK 742

Query:   105 VLRYVGVVDAINKEGRVELRRYKRD--HPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAG 162
             VLRYVG ++    EG   +R  + D   P   + G +N +AF ++ Y+  P ++RG GAG
Sbjct:   743 VLRYVGQIE----EGACHVRIAEVDATDPLYSVKGGENALAFYSRYYQPIPFVLRGYGAG 798

Query:   163 AQVTAGGIFSDILRLASY 180
              +VTA G F+D+LR  ++
Sbjct:   799 TEVTAAGAFADVLRTLNW 816

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SA18	AKH1_ARATH	1, ., 1, ., 1, ., 3	0.8297	0.7621	0.1547	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!
3rd Layer	1.1.1.3	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XIX000654	hypothetical protein (829 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_scaffold_66000196	homoserine kinase (EC-2.7.1.39) (366 aa)	•		•	•		•	•		0.987
	eugene3.37950001	aspartate semialdehyde dehydrogenase (EC-1.2.1.11) (344 aa)						•	•		0.923
	grail3.0035005702	dihydrodipicolinate synthase (EC-4.2.1.52) (363 aa)						•	•		0.922
	eugene3.00081272	aspartate semialdehyde dehydrogenase (EC-1.2.1.11) (375 aa)						•	•		0.921
	eugene3.00100987	aspartate semialdehyde dehydrogenase (EC-1.2.1.11) (375 aa)						•	•		0.921
	estExt_fgenesh4_pg.C_LG_II1351	dihydrodipicolinate synthase (EC-4.2.1.52) (366 aa)						•	•		0.921
	estExt_fgenesh4_pg.C_LG_XVI0748	adenylosuccinate synthase (EC-6.3.4.4); Plays an important role in the de novo pathway of purin [...] (491 aa)				•		•			0.816
	estExt_fgenesh4_pm.C_LG_XVIII0241	SubName- Full=Putative uncharacterized protein; (407 aa)						•			0.810
	estExt_fgenesh4_pg.C_LG_VI1672	aspartate transaminase (EC-2.6.1.1) (449 aa)						•			0.807
	gw1.XIV.3012.1	aspartate transaminase (EC-2.6.1.1) (403 aa)						•			0.806

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
PRK09436	819	PRK09436, thrA, bifunctional aspartokinase I/homos	3e-58
PRK09466	810	PRK09466, metL, bifunctional aspartate kinase II/h	7e-34
pfam00742	178	pfam00742, Homoserine_dh, Homoserine dehydrogenase	4e-29
COG0460	333	COG0460, ThrA, Homoserine dehydrogenase [Amino aci	2e-26
PLN02700	377	PLN02700, PLN02700, homoserine dehydrogenase famil	7e-23
PRK06270	341	PRK06270, PRK06270, homoserine dehydrogenase; Prov	3e-06
PRK08374	336	PRK08374, PRK08374, homoserine dehydrogenase; Prov	2e-05

>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

 Score =  194 bits (496), Expect = 3e-58
 Identities = 58/138 (42%), Positives = 89/138 (64%), Gaps = 2/138 (1%)

Query: 46  VIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEV 105
           ++ILARE+G +LEL D+ V S +PE   A  S +EFM +LP+ D E A +  +A   G+V
Sbjct: 683 LLILAREAGYELELEDIEVESVLPEEFDASGSVDEFMARLPELDAEFAARVAKARAEGKV 742

Query: 106 LRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQV 165
           LRYVG ++  + + RV +     +HP  ++ G +N +AF T+ Y+  PL++RG GAG +V
Sbjct: 743 LRYVGQIE--DGKCRVGIAEVDANHPLYKVKGGENALAFYTRYYQPIPLVLRGYGAGNEV 800

Query: 166 TAGGIFSDILRLASYLGA 183
           TA G+F+D+LR  S+   
Sbjct: 801 TAAGVFADLLRTLSWKLG 818

Length = 819

>gnl|CDD|236530 PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

 Score =  126 bits (318), Expect = 7e-34
 Identities = 56/135 (41%), Positives = 86/135 (63%), Gaps = 2/135 (1%)

Query: 47  IILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVL 106
           +ILARE+G ++E  D+ V S VP  L+   S ++F +   + D+++ ++ + A + G+VL
Sbjct: 678 VILAREAGYEIEPDDVRVESLVPAHLED-GSLDQFFENGDELDEQMLQRLEAAAEQGKVL 736

Query: 107 RYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVT 166
           RYV   DA N + RV +   + DHP A L   DN+ A  ++ Y++ PL++RGPGAG +VT
Sbjct: 737 RYVARFDA-NGKARVGVEAVRPDHPLANLLPCDNVFAIESRWYRDNPLVIRGPGAGREVT 795

Query: 167 AGGIFSDILRLASYL 181
           AG I SD+ RLA  L
Sbjct: 796 AGAIQSDLNRLAQLL 810

Length = 810

>gnl|CDD|216092 pfam00742, Homoserine_dh, Homoserine dehydrogenase

 Score =  105 bits (265), Expect = 4e-29
 Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 26/132 (19%)

Query: 46  VIILARES-GLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           ++ILAR + GL +EL D+ V    P  L+    A+E                      G 
Sbjct: 70  LLILARLAFGLPVELDDVEVEGISPITLEDIEYAKEL---------------------GY 108

Query: 105 VLRYVGVVDAINKEG--RVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAG 162
           V++ V            RV      +DHP A + G DN +   T RY   PL++ GPGAG
Sbjct: 109 VIKLVAEARREGGGLEARVGPTLVPKDHPLASVDGVDNAVLIETDRY--GPLVIYGPGAG 166

Query: 163 AQVTAGGIFSDI 174
            + TA  + SD+
Sbjct: 167 GEPTASAVLSDL 178

Length = 178

>gnl|CDD|223536 COG0460, ThrA, Homoserine dehydrogenase [Amino acid transport and metabolism]

 Score =  102 bits (256), Expect = 2e-26
 Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 26/142 (18%)

Query: 46  VIILARES-GLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           ++ILAR + G    L D+ V    P   +               D E AK+       G 
Sbjct: 215 LVILARLAFGTPETLDDVEVEGITPITPE---------------DIEFAKEL------GY 253

Query: 105 VLRYVGVVDAINK--EGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAG 162
           V++ VG+ D   K  E RV      +DHP A ++G  N +A  T  Y   PL++ GPGAG
Sbjct: 254 VIKLVGIADKTGKGIEARVHPTLVPKDHPLASVNGVMNAVAIETDAYG--PLVLYGPGAG 311

Query: 163 AQVTAGGIFSDILRLASYLGAP 184
            +VTA  + SD+LR+A      
Sbjct: 312 GEVTASAVLSDLLRIARLKVGG 333

Length = 333

>gnl|CDD|215377 PLN02700, PLN02700, homoserine dehydrogenase family protein

 Score = 93.3 bits (232), Expect = 7e-23
 Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 4/140 (2%)

Query: 45  QVIILARESGLKLELSDLPVRSFVPEPLKACA-SAEEFMKQ-LPQFDKELAKQRQEAEDA 102
           + +ILAR  G ++ +  + V S  PE +     S ++F+   L + D  + ++ +EA   
Sbjct: 240 KALILARLLGKRINMDSIKVESLYPEEMGPDLMSTDDFLHSGLVELDLPIEERVKEASLK 299

Query: 103 GEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAG 162
           G VLRYV V++  + +  V +R   +D    +L GSDN++   ++ Y EQPL+++G GAG
Sbjct: 300 GCVLRYVCVIEGSSCQ--VGIRELPKDSALGRLRGSDNVVEIYSRCYSEQPLVIQGAGAG 357

Query: 163 AQVTAGGIFSDILRLASYLG 182
              TA G+ +DIL L     
Sbjct: 358 NDTTAAGVLADILDLQDLFH 377

Length = 377

>gnl|CDD|235763 PRK06270, PRK06270, homoserine dehydrogenase; Provisional

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 97  QEAEDAGEVLRYVG-VVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLI 155
           + A   G  ++ +G V     K+  V  R    DHP A +SG+ N   F T    +  + 
Sbjct: 258 ELAAKEGYRIKLIGEVSR--EKDLSVSPRLVPLDHPLA-VSGTLNAATFETDLAGD--VT 312

Query: 156 VRGPGAGAQVTAGGIFSDIL 175
           V G GAG+  TA  I SD++
Sbjct: 313 VVGRGAGSIETASAILSDLI 332

Length = 341

>gnl|CDD|169409 PRK08374, PRK08374, homoserine dehydrogenase; Provisional

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 9/84 (10%)

Query: 97  QEAEDAGEVLRYVGVVDAINKEGRVEL--RRYKRDHPFAQLSGSDNIIAFTTKRYKEQPL 154
           + A+  G  +R V  V+    EGR+ +  ++   + P A + G +N     T    E  L
Sbjct: 253 ERAKAKGRNVRLVATVE----EGRISVKPKKLPENSPLA-VEGVENAAVIKTDLLGE--L 305

Query: 155 IVRGPGAGAQVTAGGIFSDILRLA 178
           +++GPGAG + TA G+ +DI++ A
Sbjct: 306 VLKGPGAGGKETASGVVTDIIKAA 329

Length = 336

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
PLN02700	377	homoserine dehydrogenase family protein	100.0
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	100.0
PF00742	179	Homoserine_dh: Homoserine dehydrogenase; InterPro:	100.0
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	100.0
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	100.0
PRK06349	426	homoserine dehydrogenase; Provisional	100.0
PRK08374	336	homoserine dehydrogenase; Provisional	100.0
KOG0455	364	consensus Homoserine dehydrogenase [Amino acid tra	100.0
PRK06270	341	homoserine dehydrogenase; Provisional	100.0
PRK06813	346	homoserine dehydrogenase; Validated	100.0
PRK06392	326	homoserine dehydrogenase; Provisional	100.0

>PLN02700 homoserine dehydrogenase family protein

Probab=100.00  E-value=6.9e-44  Score=319.18  Aligned_cols=172  Identities=30%  Similarity=0.504  Sum_probs=158.2

Q ss_pred             hhhhhhh-cccceeeeeccccc-Cc------------------------cccCCCcCCHh-HHHHHHHHHHHHhcCCCCC
Q 029942            6 ELSEKLT-TVDASIFVCGLFLC-LN------------------------AECNSMRIRLK-KTFFLQVIILARESGLKLE   58 (185)
Q Consensus         6 ~~~~~~~-~~d~i~~~~gi~~~-~n------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~G~~i~   58 (185)
                      +..+.+. +||+|.+|+||||+ +|                        +|. ||+.||+ +|+|||++||||++|++++
T Consensus       175 ~tl~~ll~sGd~I~~I~GIlnGT~nyIl~~m~~g~~fseal~eAq~~GyaEp-DP~~Dl~G~D~ArKl~ILAr~~G~~~~  253 (377)
T PLN02700        175 ASLNRILSSGDPVHRIVGSLSGTLGYVMSELEDGKPFSEVVKQAKSLGYTEP-DPRDDLGGMDVARKALILARLLGKRIN  253 (377)
T ss_pred             HHHHHHhhccCCEEEEEEEEeChHHHHHHHHhcCCCHHHHHHHHHHcCCCCC-CCccccccHhHHHHHHHHHHHhCCCCC
Confidence            4455655 69999999999995 44                        776 9999999 9999999999999999999


Q ss_pred             CCCeeeecCCCcCCcCC-CChHHHHh-cCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCccccC
Q 029942           59 LSDLPVRSFVPEPLKAC-ASAEEFMK-QLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLS  136 (185)
Q Consensus        59 ~~dV~v~~l~p~gi~~i-~~~~~fl~-~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pLa~v~  136 (185)
                      ++||+++||+|+.+... .+.++|++ +|+++|+.|+++++.|+++|+++||||+++  +++++|+|+.+|++|||++|+
T Consensus       254 ~~dv~v~~l~p~~~~~~~~s~~~f~~~gi~~~d~~~~~~~~~A~~~g~~lR~Va~~~--~~~~~V~~~~vp~~hpla~v~  331 (377)
T PLN02700        254 MDSIKVESLYPEEMGPDLMSTDDFLHSGLVELDLPIEERVKEASLKGCVLRYVCVIE--GSSCQVGIRELPKDSALGRLR  331 (377)
T ss_pred             hhhEEEEecccccccccccchhhHhhcCCccCChHHHHHHHHHHHCCCEEEEEEEEE--CCeEEEEEEEECCCCccccCC
Confidence            99999999999988632 24899999 899999999999999999999999999997  468999999999999999999


Q ss_pred             CCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHh
Q 029942          137 GSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASY  180 (185)
Q Consensus       137 g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~  180 (185)
                      |++|+|.|+|++|+++|++++|+|||+.+||+|||+||+++++.
T Consensus       332 g~~N~v~~~t~~~~~~plvv~G~GAG~~~TA~~vl~Dll~i~~~  375 (377)
T PLN02700        332 GSDNVVEIYSRCYSEQPLVIQGAGAGNDTTAAGVLADILDLQDL  375 (377)
T ss_pred             CCceEEEEEecccCCcceEEEcCCCChhHhHHHHHHHHHHHHHh
Confidence            99999999999998889999999999999999999999999973

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=100.00  E-value=6.9e-43  Score=337.35  Aligned_cols=173  Identities=36%  Similarity=0.629  Sum_probs=162.0

Q ss_pred             hhhhhhh-cccceeeeeccccc-Cc------------------------cccCCCcCCHh-HHHHHHHHHHHHhcCCCCC
Q 029942            6 ELSEKLT-TVDASIFVCGLFLC-LN------------------------AECNSMRIRLK-KTFFLQVIILARESGLKLE   58 (185)
Q Consensus         6 ~~~~~~~-~~d~i~~~~gi~~~-~n------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~G~~i~   58 (185)
                      ..++.++ .||+|.+|+||+|+ +|                        ||. |||.||+ +|+|+|++||||++|.+++
T Consensus       611 ~~l~~l~~~gd~i~~i~GIlnGT~nyi~~~~~~g~~f~eal~~Aq~~GyaE~-DP~~Dl~G~D~a~Kl~ILa~~~g~~~~  689 (810)
T PRK09466        611 HTVRDLRNSGDSILAISGIFSGTLSWLFLQFDGSVPFSELVDQAWQQGLTEP-DPRDDLSGRDVMRKLVILAREAGYEIE  689 (810)
T ss_pred             HHHHHHHhccCcEEEEEEEEccHHHHHHHHHhcCCCHHHHHHHHHHcCCCCC-CCccccccHHHHHHHHHHHHHhCCCCC
Confidence            3455555 69999999999994 44                        777 9999999 9999999999999999999


Q ss_pred             CCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCccccCCC
Q 029942           59 LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGS  138 (185)
Q Consensus        59 ~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pLa~v~g~  138 (185)
                      ++||++++|+|+||++++ .+||+++|+.+|+.|+++++.|+++|+++||||++++ +++++|+|+++|++|||++|+|+
T Consensus       690 ~~dv~~~~l~p~~i~~i~-~~df~~~l~~~d~~~~~~i~~A~~~g~~lrlva~~~~-~~~~~V~p~~v~~~~pla~v~g~  767 (810)
T PRK09466        690 PDDVRVESLVPAHLEDGS-LDQFFENGDELDEQMLQRLEAAAEQGKVLRYVARFDA-NGKARVGVEAVRPDHPLANLLPC  767 (810)
T ss_pred             hheEEEeecCCcccccCC-HHHHhhhhhhhhhhHHHHHHHHHHCCCEEEEEEEEEe-CCEEEEEEEEECCCCcccccCCC
Confidence            999999999999999987 8999999999999999999999999999999999987 55999999999999999999999


Q ss_pred             CeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhc
Q 029942          139 DNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL  181 (185)
Q Consensus       139 ~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~  181 (185)
                      +|++.|+|++++++|++++|+|||+.+||+||++||+++++.|
T Consensus       768 ~N~v~~~t~~~~~~~l~~~G~GAG~~~TA~aVlsDll~i~~~~  810 (810)
T PRK09466        768 DNVFAIESRWYRDNPLVIRGPGAGREVTAGAIQSDLNRLAQLL  810 (810)
T ss_pred             ceEEEEEeccccCCceEEEcCCCChHHhHHHHHHHHHHHHhhC
Confidence            9999999999965589999999999999999999999999864

>PF00742 Homoserine_dh: Homoserine dehydrogenase; InterPro: IPR001342 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=100.00  E-value=2.5e-42  Score=281.91  Aligned_cols=147  Identities=31%  Similarity=0.455  Sum_probs=133.2

Q ss_pred             hhhhhhhhcccceeeeecccc-cCc-------------------------cccCCCcCCHh-HHHHHHHHHHHHh-cCCC
Q 029942            5 FELSEKLTTVDASIFVCGLFL-CLN-------------------------AECNSMRIRLK-KTFFLQVIILARE-SGLK   56 (185)
Q Consensus         5 ~~~~~~~~~~d~i~~~~gi~~-~~n-------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~-~G~~   56 (185)
                      +.+.+...++|+|.+|+||+| |+|                         ||. ||+.||+ +|+|+|++||||+ +|.+
T Consensus         3 i~~l~~~~~~~~I~~i~GIlNGT~NyIL~~m~~~g~~f~~al~eAq~lGyaE~-DP~~Dv~G~Daa~Kl~ILa~~~~g~~   81 (179)
T PF00742_consen    3 INTLRNLLAGDKIKRIEGILNGTTNYILTRMEEEGLSFSEALKEAQELGYAEA-DPSDDVDGWDAARKLVILARLAFGVD   81 (179)
T ss_dssp             HHHHHHCCTTSCEEEEEEE--HHHHHHHHHHHTHT--HHHHHHHHHHTTSS-S-STHHHHTTHHHHHHHHHHHHHHHTTT
T ss_pred             hhHHhhhcccCceEEEEEEEcCHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCC-CcccCCCCHhHHHHHHHHhHHHHCCC
Confidence            567888899999999999999 454                         888 9999999 9999999999999 7999


Q ss_pred             CCCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCC--eEEEEEEEecCCCCccc
Q 029942           57 LELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINK--EGRVELRRYKRDHPFAQ  134 (185)
Q Consensus        57 i~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~--~~~V~p~~vp~~~pLa~  134 (185)
                      ++++||++     +||++++                .+|+++|+++|+++||||++++.++  +++|+|+++|++|||++
T Consensus        82 ~~~~dv~~-----~gI~~i~----------------~~~i~~a~~~g~~~klva~~~~~~~~~~~~V~p~~v~~~~pla~  140 (179)
T PF00742_consen   82 LDPEDVPV-----EGIRDIT----------------PEDIAYAKKEGKVLKLVASADRENGGIQASVKPELVPKDHPLAS  140 (179)
T ss_dssp             -SGGGSEE-------STTGG----------------HHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEEEEETTSGGGG
T ss_pred             CCccceee-----cCCCCcC----------------HHHHHHHHHCCCEEEEEEEEEEeCCcEEEEEEEEEcCCCCcccc
Confidence            99999999     8999998                5799999999999999999998655  79999999999999999


Q ss_pred             cCCCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHH
Q 029942          135 LSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDIL  175 (185)
Q Consensus       135 v~g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll  175 (185)
                      ++|++|++.|+|+++|  +++++|+|||+.+||+||++||+
T Consensus       141 v~g~~N~v~i~t~~~g--~~~~~G~GAG~~~TA~avl~Dll  179 (179)
T PF00742_consen  141 VKGSENAVEIETDYYG--PLVLYGPGAGPLPTASAVLSDLL  179 (179)
T ss_dssp             SSTTEEEEEEEESSSE--EEEEEECSSSHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEEccccc--cEEEEcCCCChHHHHHHHHHhhC
Confidence            9999999999999998  99999999999999999999996

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the catalytic domain of homoserine dehydrogenase.; GO: 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2EJW_E 3ING_A 3JSA_A 3C8M_A 1TVE_A 1EBU_D 1EBF_B 1Q7G_A 3DO5_A 3MTJ_A.

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.6e-41  Score=297.84  Aligned_cols=155  Identities=33%  Similarity=0.480  Sum_probs=144.1

Q ss_pred             hhhhhhhhcccceeeeeccccc-Cc-------------------------cccCCCcCCHh-HHHHHHHHHHHHh-cCCC
Q 029942            5 FELSEKLTTVDASIFVCGLFLC-LN-------------------------AECNSMRIRLK-KTFFLQVIILARE-SGLK   56 (185)
Q Consensus         5 ~~~~~~~~~~d~i~~~~gi~~~-~n-------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~-~G~~   56 (185)
                      +++.+.+..+|+|.+|.||+|+ +|                         ||. |||+||+ +|+|||++||||+ +|.+
T Consensus       148 I~~lr~~l~g~~I~~i~GIlNGT~NyIlt~m~~~~~~f~dal~eAq~lGyAE~-DPt~DleG~DaA~Kl~ILa~~~~g~~  226 (333)
T COG0460         148 IKLLRELLAGDEILSIRGILNGTTNYILTRMEEGGLSFEDALAEAQELGYAEA-DPTDDLEGIDAARKLVILARLAFGTP  226 (333)
T ss_pred             HHHHHhhcccCceEEEEEEEeccHHHHHHHHHccCCCHHHHHHHHHHcCCCCC-CCCCCccchHHHHHHHHHHHHHcCCC
Confidence            4677888899999999999994 44                         888 9999999 9999999999998 6999


Q ss_pred             CCCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCC--eEEEEEEEecCCCCccc
Q 029942           57 LELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINK--EGRVELRRYKRDHPFAQ  134 (185)
Q Consensus        57 i~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~--~~~V~p~~vp~~~pLa~  134 (185)
                      ++++||++     +||+.++                .+|++.|+++|+++||||.+++.++  +++|+|++||.+|||++
T Consensus       227 ~~~~DV~v-----eGI~~i~----------------~~d~~~A~~~G~~iklvg~~~~~~~~~~~~V~p~~vp~~~pLa~  285 (333)
T COG0460         227 ETLDDVEV-----EGITPIT----------------PEDIEFAKELGYVIKLVGIADKTGKGIEARVHPTLVPKDHPLAS  285 (333)
T ss_pred             CChhheEE-----ecCcCCC----------------HHHHHHHHhCCcEEEEEEEEEecCCceEEEEEeEEeCCCCccee
Confidence            99999999     7899998                4799999999999999999998655  69999999999999999


Q ss_pred             cCCCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhcCC
Q 029942          135 LSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGA  183 (185)
Q Consensus       135 v~g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~~~  183 (185)
                      |+|.+|++.|+|+.+|  |++++|+|||+.+||+||++|++++++....
T Consensus       286 V~g~~Nav~i~td~~g--~l~~~G~GAG~~~TAsaV~sDli~i~~~~~~  332 (333)
T COG0460         286 VNGVMNAVAIETDAYG--PLVLYGPGAGGEVTASAVLSDLLRIARLKVG  332 (333)
T ss_pred             cCCcceEEEEEeeccc--eEEEEeCCCCcchhHHHHHHHHHHHHHhccC
Confidence            9999999999999999  9999999999999999999999999987654

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=100.00  E-value=1.5e-40  Score=321.73  Aligned_cols=175  Identities=38%  Similarity=0.621  Sum_probs=163.4

Q ss_pred             hhhhhhh-cccceeeeeccccc-Cc------------------------cccCCCcCCHh-HHHHHHHHHHHHhcCCCCC
Q 029942            6 ELSEKLT-TVDASIFVCGLFLC-LN------------------------AECNSMRIRLK-KTFFLQVIILARESGLKLE   58 (185)
Q Consensus         6 ~~~~~~~-~~d~i~~~~gi~~~-~n------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~G~~i~   58 (185)
                      ...+.+. +||.|.+|+||+|+ +|                        ||. |||.||+ +|+|+|++||||++|++++
T Consensus       617 ~~l~~~~~~g~~i~~i~GilnGT~nyIl~~~~~g~~f~~al~~Aq~~GyaE~-DP~~Dl~G~D~a~Kl~ILa~~~g~~~~  695 (819)
T PRK09436        617 ETLQNLLNAGDELLKFEGILSGSLSFIFGKLDEGMSFSEATRLAKEKGYTEP-DPRDDLSGMDVARKLLILAREAGYELE  695 (819)
T ss_pred             HHHHHHHhccCcEEEEEEEEeChHHHHhhhhhcCCCHHHHHHHHHHcCCCCC-CCcccccchHHHHHHHHHHHHhCCCCC
Confidence            4566666 89999999999995 44                        777 9999999 9999999999999999999


Q ss_pred             CCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCccccCCC
Q 029942           59 LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGS  138 (185)
Q Consensus        59 ~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pLa~v~g~  138 (185)
                      ++||++++++|+++....++++|++++..+|+.|.++++.|+++|+++||||+++  +++++|+|+++|++||||+|+|+
T Consensus       696 ~~dv~~~gi~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~g~~lr~va~~~--~~~~~v~~~~v~~~~~la~v~g~  773 (819)
T PRK09436        696 LEDIEVESVLPEEFDASGSVDEFMARLPELDAEFAARVAKARAEGKVLRYVGQIE--DGKCRVGIAEVDANHPLYKVKGG  773 (819)
T ss_pred             hhheeecccCchhhcccccHHHHHhhchhhhhHHHHHHHHHHHCCCEEEEEEEEe--CCeEEEEEEEECCCCccccCCCC
Confidence            9999999999998877656899999999999999999999999999999999994  56899999999999999999999


Q ss_pred             CeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhcCC
Q 029942          139 DNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGA  183 (185)
Q Consensus       139 ~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~~~  183 (185)
                      +|+|.|+|+++|++|++++|+|||+.+||+|||+||+++++++++
T Consensus       774 ~n~v~~~t~~~~~~~~~~~G~gAG~~~TA~av~~Dll~i~~~~~~  818 (819)
T PRK09436        774 ENALAFYTRYYQPIPLVLRGYGAGNEVTAAGVFADLLRTLSWKLG  818 (819)
T ss_pred             ceEEEEEecccCceeeEEEcCCCChHHhHHHHHHHHHHHHHhhcC
Confidence            999999999999778999999999999999999999999998876

>PRK06349 homoserine dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-39  Score=295.57  Aligned_cols=154  Identities=22%  Similarity=0.302  Sum_probs=142.7

Q ss_pred             hhhhhhhhcccceeeeeccccc-Cc-------------------------cccCCCcCCHh-HHHHHHHHHHHHh-cCCC
Q 029942            5 FELSEKLTTVDASIFVCGLFLC-LN-------------------------AECNSMRIRLK-KTFFLQVIILARE-SGLK   56 (185)
Q Consensus         5 ~~~~~~~~~~d~i~~~~gi~~~-~n-------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~-~G~~   56 (185)
                      +...++..++|.|.+|+||+|+ +|                         ||. |||+||+ +|+|+|++||||+ +|.+
T Consensus       139 i~~l~~~l~~~~I~~I~GIlnGT~nyIl~~m~~~g~~f~~al~~Aq~~GyaE~-DP~~Dv~G~D~a~Kl~ILa~~~~g~~  217 (426)
T PRK06349        139 IKALREGLAANRITRVMGIVNGTTNYILTKMTEEGLSFEDALKEAQRLGYAEA-DPTFDVEGIDAAHKLAILASLAFGTR  217 (426)
T ss_pred             HHHHHhhcccCCeeEEEEEEeCcHHHHHhhhhhcCCCHHHHHHHHHHcCCCCC-CCCCCCcCHHHHHHHHHHHHHHcCCC
Confidence            4566777899999999999994 54                         777 9999999 9999999999998 5999


Q ss_pred             CCCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCC--eEEEEEEEecCCCCccc
Q 029942           57 LELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINK--EGRVELRRYKRDHPFAQ  134 (185)
Q Consensus        57 i~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~--~~~V~p~~vp~~~pLa~  134 (185)
                      ++++||++     +||++++                .+|+++|+++|+++||||++++.++  +++|+|+++|++|||++
T Consensus       218 ~~~~~i~~-----~gi~~i~----------------~~di~~a~~~g~~iklv~~~~~~~~~~~~~V~p~~v~~~~pla~  276 (426)
T PRK06349        218 VDFDDVYV-----EGISKIT----------------AEDIAYAKELGYRIKLLGIAERTEEGIELRVHPTLIPKSHPLAN  276 (426)
T ss_pred             CChhheee-----eCcccCC----------------HHHHHHHHHCCCeEEEEEEEEEcCCcEEEEEEEEEECCCCccee
Confidence            99999999     8999998                5889999999999999999987543  69999999999999999


Q ss_pred             cCCCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhcC
Q 029942          135 LSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLG  182 (185)
Q Consensus       135 v~g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~~  182 (185)
                      |+|++|+|.|+|+.+|  +++++|+|||+.+||+||++||+++++...
T Consensus       277 v~g~~N~v~~~~~~~g--~~~~~G~GAG~~~Ta~av~~Di~~~~~~~~  322 (426)
T PRK06349        277 VNGVMNAVFVEGDAVG--ETMFYGPGAGGLPTASAVVADLVDIARNLV  322 (426)
T ss_pred             CCCCceEEEEEecccc--cEEEEeCCCChHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999  999999999999999999999999998754

>PRK08374 homoserine dehydrogenase; Provisional

Probab=100.00  E-value=3.1e-39  Score=285.30  Aligned_cols=153  Identities=20%  Similarity=0.262  Sum_probs=141.6

Q ss_pred             hhhhhhhhcccceeeeeccccc-Cc------------------------cccCCCcCCHh-HHHHHHHHHHHHhcCCCCC
Q 029942            5 FELSEKLTTVDASIFVCGLFLC-LN------------------------AECNSMRIRLK-KTFFLQVIILARESGLKLE   58 (185)
Q Consensus         5 ~~~~~~~~~~d~i~~~~gi~~~-~n------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~G~~i~   58 (185)
                      +...+...++|+|.+|+||+|+ +|                        ||. |||.||+ +|+|+|++||||+++.+++
T Consensus       157 i~~l~~~l~g~~i~~i~GIlnGT~nyIl~~m~~g~~f~eal~eAq~~GyaE~-DP~~Dv~G~D~a~Kl~ILa~~~~~~~~  235 (336)
T PRK08374        157 IGLLRENLLGDTVKRIEAVVNATTTFILTRMEQGKTFEEALKEAQTLGIAER-DPSKDIDGIDAGYKATILHWVAFPPIT  235 (336)
T ss_pred             hHHHHhhccccceEEEEEEEechHHHHHHHhhCCCCHHHHHHHHHHcCCCCC-CCcccccCHHHHHHHHHHHHHhCCCCC
Confidence            4567788899999999999994 54                        777 9999999 9999999999999779999


Q ss_pred             CCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCccccCCC
Q 029942           59 LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGS  138 (185)
Q Consensus        59 ~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pLa~v~g~  138 (185)
                      ++||++     +||++++                .+|++.|+++|+++||||+++.  ++++|+|+++|++|||+ ++|.
T Consensus       236 ~~dv~~-----~gi~~i~----------------~~~i~~a~~~g~~lklv~~~~~--~~~~V~p~~v~~~~pl~-v~g~  291 (336)
T PRK08374        236 FEEVGI-----RGIKDVT----------------EGEIERAKAKGRNVRLVATVEE--GRISVKPKKLPENSPLA-VEGV  291 (336)
T ss_pred             hhheee-----eccccCC----------------HHHHHHHHHCCCEEEEEEEEEC--CeEEEEEEEECCCCCee-eCCC
Confidence            999999     7999987                5899999999999999999864  58999999999999999 9999


Q ss_pred             CeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhcCCC
Q 029942          139 DNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAP  184 (185)
Q Consensus       139 ~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~~~~  184 (185)
                      +|++.|+|+.+|  +++++|+|||+.+||+|||+||+++++.+-++
T Consensus       292 ~n~v~~~t~~~g--~~~~~G~GAG~~~TA~avl~Dll~~~~~~~~~  335 (336)
T PRK08374        292 ENAAVIKTDLLG--ELVLKGPGAGGKETASGVVTDIIKAALKFPKY  335 (336)
T ss_pred             ceEEEEEccccC--cEEEEeCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999  89999999999999999999999999977554

>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.3e-39  Score=275.55  Aligned_cols=174  Identities=42%  Similarity=0.711  Sum_probs=164.8

Q ss_pred             hhhhhhcccceeeeecccccC-----------------------------ccccCCCcCCHh-HHHHHHHHHHHHhcCCC
Q 029942            7 LSEKLTTVDASIFVCGLFLCL-----------------------------NAECNSMRIRLK-KTFFLQVIILARESGLK   56 (185)
Q Consensus         7 ~~~~~~~~d~i~~~~gi~~~~-----------------------------n~~~~DPt~Dv~-~DaA~Kl~ILAr~~G~~   56 (185)
                      |-|-+.+||++.+|+|||++|                             |+|- ||+.|+. .|+|||..||+|.+|+.
T Consensus       159 L~eiI~tGDev~kIeGifSGTLsYifne~s~gk~~~~sfsdvVk~AKklGYTEP-DPRDDLnGmDVARKvtIl~Ri~Gv~  237 (364)
T KOG0455|consen  159 LNEIISTGDEVHKIEGIFSGTLSYIFNELSDGKPGTLSFSDVVKAAKKLGYTEP-DPRDDLNGMDVARKVTILARILGVR  237 (364)
T ss_pred             HHHHHhcCCceeEEEEEeeccHHHHHHHhhcCCCCcccHHHHHHHHHHcCCCCC-Ccccccccchhhhhhhhhhhhccce
Confidence            556788999999999999964                             2555 9999999 99999999999999999


Q ss_pred             CC-CCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCcccc
Q 029942           57 LE-LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQL  135 (185)
Q Consensus        57 i~-~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pLa~v  135 (185)
                      ++ ++.++++||+|+.+.++.+.+||+++|.++|..|.++.++|..+|+++|+||.++..+....|+.+.+..+|||+++
T Consensus       238 ves~~Sfpv~SLiPepl~s~~sadeFL~gl~~~D~~~~~~~keA~~egkVlRfvg~~dva~ksv~Vgiekyd~shPfa~L  317 (364)
T KOG0455|consen  238 VESMDSFPVESLIPEPLPSLMSADEFLHGLVKLDQNIEERVKEASSEGKVLRFVGVIDVANKSVQVGIEKYDKSHPFARL  317 (364)
T ss_pred             eecccccchhhcCCccccccccHHHHHhhhhhhhhhHHHHHHHhhccCcEEEEEEEEecccceEEeeeEeccccCchhhh
Confidence            98 99999999999999999999999999999999999999999999999999999998777899999999999999999


Q ss_pred             CCCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhc
Q 029942          136 SGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL  181 (185)
Q Consensus       136 ~g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~  181 (185)
                      +|++|.+.|+|++|.++|++++|.|||...||++||+|+++|+..+
T Consensus       318 ~gSDNiisi~tkrY~t~PlViqGAGAGaavTAAGVLgDiIki~~~~  363 (364)
T KOG0455|consen  318 RGSDNIISIYTKRYKTQPLVIQGAGAGAAVTAAGVLGDIIKIQDLF  363 (364)
T ss_pred             cCCCceEEEEeeecccCceEEEccCCcchhhhhHHHHHHHHHHHhh
Confidence            9999999999999988999999999999999999999999998764

>PRK06270 homoserine dehydrogenase; Provisional

Probab=100.00  E-value=9.1e-39  Score=282.38  Aligned_cols=153  Identities=27%  Similarity=0.345  Sum_probs=141.4

Q ss_pred             hhhhhhhhcccceeeeeccccc-Cc-------------------------cccCCCcCCHh-HHHHHHHHHHHHhc-CCC
Q 029942            5 FELSEKLTTVDASIFVCGLFLC-LN-------------------------AECNSMRIRLK-KTFFLQVIILARES-GLK   56 (185)
Q Consensus         5 ~~~~~~~~~~d~i~~~~gi~~~-~n-------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~-G~~   56 (185)
                      +...+++..+|+|.+|+||+|+ +|                         ||. |||.||+ +|+|+|++||||++ |.+
T Consensus       160 i~~l~~~l~g~~I~~I~GIlnGT~nyIl~~m~~~g~~f~~al~~Aq~~G~aE~-DP~~D~~G~D~a~Kl~Ila~~~~g~~  238 (341)
T PRK06270        160 INLAKETLAGNDIKSIKGILNGTTNYILTRMEEEGLSYEQALAEAQELGYAEA-DPTYDVEGIDAALKVVILANSILGAD  238 (341)
T ss_pred             HHHHHhhcccCceEEEEEEEeCcHHHHHHHHhhcCCCHHHHHHHHHHcCCCCC-CCCCCCccHHHHHHHHHHHHHHcCCC
Confidence            4567777889999999999994 44                         777 9999999 99999999999995 999


Q ss_pred             CCCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCccccC
Q 029942           57 LELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLS  136 (185)
Q Consensus        57 i~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pLa~v~  136 (185)
                      ++++||++     +||++++                ++|++.|+++|+++||||+++..++ ++|+|+++|++|||+ |+
T Consensus       239 ~~~~~v~~-----~gi~~~~----------------~~~~~~a~~~g~~~r~v~~~~~~~~-~~V~~~~~~~~~~l~-~~  295 (341)
T PRK06270        239 LTIKDVEV-----EGITKIT----------------PEAIELAAKEGYRIKLIGEVSREKD-LSVSPRLVPLDHPLA-VS  295 (341)
T ss_pred             CCHHHeee-----cCcccCC----------------HHHHHHHHHCCCEEEEEEEEEcCCC-eEEEEEEECCCCCcE-EC
Confidence            99999999     7888888                5899999999999999999987444 999999999999999 99


Q ss_pred             CCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhcCC
Q 029942          137 GSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGA  183 (185)
Q Consensus       137 g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~~~  183 (185)
                      |++|++.|+|+++|  |++++|+|||+.+||+||++||+++++..++
T Consensus       296 g~~n~~~~~~~~~~--~~~~~G~gaG~~~Ta~av~~Dl~~i~~~~~~  340 (341)
T PRK06270        296 GTLNAATFETDLAG--DVTVVGRGAGSIETASAILSDLIAIHDRYGK  340 (341)
T ss_pred             CCceEEEEEecccC--CEEEEeCCCChHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999  9999999999999999999999999998764

>PRK06813 homoserine dehydrogenase; Validated

Probab=100.00  E-value=8e-38  Score=277.69  Aligned_cols=151  Identities=18%  Similarity=0.264  Sum_probs=137.3

Q ss_pred             hhhhhhhcccceeeeeccccc-Cc-------------------------cccCCCcCCHh-HHHHHHHHHHHH-hcCCCC
Q 029942            6 ELSEKLTTVDASIFVCGLFLC-LN-------------------------AECNSMRIRLK-KTFFLQVIILAR-ESGLKL   57 (185)
Q Consensus         6 ~~~~~~~~~d~i~~~~gi~~~-~n-------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr-~~G~~i   57 (185)
                      ...+...++|+|.+|+||+|+ +|                         ||. |||+||+ +|+|+|++|||+ ++|+++
T Consensus       158 ~~l~~~~~g~~I~~i~GIlNGT~NyIL~~m~~~g~~f~eal~~Aq~lGyaE~-DP~~Dl~G~D~A~Kl~ILA~~~~G~~i  236 (346)
T PRK06813        158 DIGQFSLAGCHIEKIEGILNGTTNYILTKMNEEDITFEEALKEAQSKGIAET-NPILDVSGSDSACKLLLLTNSLMGTEN  236 (346)
T ss_pred             HHHhhhcccCcEEEEEEEEechHHHHHhhhhhcCCCHHHHHHHHHHcCCCCC-CCccccccHHHHHHHHHHHHHHcCCCC
Confidence            345778999999999999994 44                         777 9999999 999999999995 589999


Q ss_pred             CCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeC-C--eEEEEEEEecCCCCccc
Q 029942           58 ELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAIN-K--EGRVELRRYKRDHPFAQ  134 (185)
Q Consensus        58 ~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~-~--~~~V~p~~vp~~~pLa~  134 (185)
                      +++||++     +||++++                .++++.|+++|+++||||++.+.+ +  .++|+|+++|++|||++
T Consensus       237 ~~~dv~~-----eGI~~i~----------------~~~i~~A~~~g~~iklva~~~~~~~~~~~~~V~p~~vp~~~pla~  295 (346)
T PRK06813        237 KLTDIHI-----KGIEHVT----------------KQQIRNAKEQNKIIKLIASAYKDNEGNVNLNVEPYKIEKNHPLAN  295 (346)
T ss_pred             ChHheEe-----eccccCC----------------HHHHHHHHHCCCEEEEEEEEEEcCCCeEEEEEEEEEECCCCcccc
Confidence            9999999     7999988                589999999999999999998754 4  46999999999999999


Q ss_pred             cCCCCeEEEEEcCccCCcceEEEcCCCC-hHHHHHHHHHHHHHHHHhc
Q 029942          135 LSGSDNIIAFTTKRYKEQPLIVRGPGAG-AQVTAGGIFSDILRLASYL  181 (185)
Q Consensus       135 v~g~~Nav~i~td~~g~~~l~v~G~GAG-~~~TA~aVlsDll~i~~~~  181 (185)
                      |+|++|++.|+|+++|  +++++| ||| +.+||+|||+||+++++..
T Consensus       296 v~g~~N~v~~~td~~g--~~~~~G-gag~~~~TAsavl~Dii~i~~~~  340 (346)
T PRK06813        296 VNGTEKGITFFTDTMG--QVTTIG-GASNPRGAAAAALKDIINLYRKD  340 (346)
T ss_pred             CCCCceEEEEEeeecC--cEEEEc-CCCCCcccHHHHHHHHHHHHhhh
Confidence            9999999999999999  999999 666 7999999999999998753

>PRK06392 homoserine dehydrogenase; Provisional

Probab=100.00  E-value=2.4e-36  Score=266.38  Aligned_cols=145  Identities=21%  Similarity=0.212  Sum_probs=132.4

Q ss_pred             hhhhhhhhcccceeeeeccccc-Cc------------------------cccCCCcCCHh-HHHHHHHHHHHHh-cCCCC
Q 029942            5 FELSEKLTTVDASIFVCGLFLC-LN------------------------AECNSMRIRLK-KTFFLQVIILARE-SGLKL   57 (185)
Q Consensus         5 ~~~~~~~~~~d~i~~~~gi~~~-~n------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~-~G~~i   57 (185)
                      +.+.+...++|+|.+|+||+|+ +|                        ||. |||.||+ +|+|+|++||||+ +|+++
T Consensus       151 i~~~~~~~~g~~i~~i~GilnGT~nyIl~~m~~g~~f~~al~eAq~lG~aE~-DP~~Dv~G~D~a~Kl~ILa~~~~g~~~  229 (326)
T PRK06392        151 FSLRDYSTLPSRIKNFRGIVSSTINYVIRQEANGRGFLDVVKIAQKMGIAET-NYSDDLMGLDAARKSVILANHLFGKDY  229 (326)
T ss_pred             hhhhhhhcccCCEEEEEEEEeChHHHHHhhccCCCCHHHHHHHHHHcCCCCC-CCccccCCHHHHHHHHHHHHHHcCCCC
Confidence            4566778999999999999994 44                        777 9999999 9999999999998 59999


Q ss_pred             CCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCC--eEEEEEEEecCCCCcccc
Q 029942           58 ELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINK--EGRVELRRYKRDHPFAQL  135 (185)
Q Consensus        58 ~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~--~~~V~p~~vp~~~pLa~v  135 (185)
                      +++||++     +||++++ .                      +.|+++|||+++.+.++  +++|+|+.+|++|||+++
T Consensus       230 ~~~dv~~-----~gi~~i~-~----------------------~~~~~~kli~~~~~~~~~~~~~V~p~~~~~~~pla~v  281 (326)
T PRK06392        230 TLRDVTY-----DGIENID-R----------------------SSMDNERLVTEVAMINGGPHAESRIRSLSRNDFLGMI  281 (326)
T ss_pred             CHHHeee-----cCccccC-H----------------------hhCCceEEEEEEEEeCCcEEEEEEEEEcCCCCcchhc
Confidence            9999999     8999998 1                      35789999999988654  699999999999999999


Q ss_pred             CCCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHh
Q 029942          136 SGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASY  180 (185)
Q Consensus       136 ~g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~  180 (185)
                      .|.+|++.|+||.+|  +++++|+|||+.+||+|||+||++++..
T Consensus       282 ~g~~n~~~~~td~~g--~~~~~G~gaG~~~Ta~a~l~Dl~~~~~~  324 (326)
T PRK06392        282 GPLSLGYQMETDING--TINVSDNYDGPYETAGAVVNDVMLLSKY  324 (326)
T ss_pred             CCCceEEEEEecccC--cEEEEeCCCCcHHHHHHHHHHHHHHHhc
Confidence            999999999999999  9999999999999999999999998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
1q7g_A	359	Homoserine Dehydrogenase In Complex With Suicide In		1e-22
1ebf_A	358	Homoserine Dehydrogenase From S. Cerevisiae Complex		1e-22

>pdb|1Q7G|A Chain A, Homoserine Dehydrogenase In Complex With Suicide Inhibitor Complex Nad-5-Hydroxy-4-Oxonorvaline Length = 359

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 94/138 (68%), Gaps = 2/138 (1%)
Query: 45  QVIILARESGLKLEL-SDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAG 103
           +V I+ R SG+++E  +  PV+S +P+PL++  SA+EF+++L  +DK+L + ++EA    
Sbjct: 223 KVTIVGRISGVEVESPTSFPVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATEN 282
Query: 104 EVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGA 163
           +VLR++G VD   K   V + +Y   HPFA L GSDN+I+  TKRY   P++++G GAGA
Sbjct: 283 KVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTKRY-TNPVVIQGAGAGA 341
Query: 164 QVTAGGIFSDILRLASYL 181
            VTA G+  D++++A  L
Sbjct: 342 AVTAAGVLGDVIKIAQRL 359

>pdb|1EBF|A Chain A, Homoserine Dehydrogenase From S. Cerevisiae Complex With Nad+ Length = 358

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 94/138 (68%), Gaps = 2/138 (1%)
Query: 45  QVIILARESGLKLEL-SDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAG 103
           +V I+ R SG+++E  +  PV+S +P+PL++  SA+EF+++L  +DK+L + ++EA    
Sbjct: 222 KVTIVGRISGVEVESPTSFPVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATEN 281
Query: 104 EVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGA 163
           +VLR++G VD   K   V + +Y   HPFA L GSDN+I+  TKRY   P++++G GAGA
Sbjct: 282 KVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTKRY-TNPVVIQGAGAGA 340
Query: 164 QVTAGGIFSDILRLASYL 181
            VTA G+  D++++A  L
Sbjct: 341 AVTAAGVLGDVIKIAQRL 358

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	5e-57
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	2e-06
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	3e-05
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	3e-04
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	8e-04

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* Length = 358

 Score =  182 bits (463), Expect = 5e-57
 Identities = 58/137 (42%), Positives = 93/137 (67%), Gaps = 2/137 (1%)

Query: 46  VIILARESGLKLEL-SDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
           V I+ R SG+++E  +  PV+S +P+PL++  SA+EF+++L  +DK+L + ++EA    +
Sbjct: 223 VTIVGRISGVEVESPTSFPVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATENK 282

Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
           VLR++G VD   K   V + +Y   HPFA L GSDN+I+  TKRY   P++++G GAGA 
Sbjct: 283 VLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTKRYT-NPVVIQGAGAGAA 341

Query: 165 VTAGGIFSDILRLASYL 181
           VTA G+  D++++A  L
Sbjct: 342 VTAAGVLGDVIKIAQRL 358

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* Length = 331

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 8/87 (9%)

Query: 96  RQEAEDAGEVLRYVGVVDAINKEGRVELRRY----KRDHPFAQLSGSDNIIAFTTKRYKE 151
             +    G+  R V         G+            +     L          T     
Sbjct: 245 LDQDRSFGKNERLVTE--TGIVNGKPSAESRIKSLDSNDYLLTLGKGSLGYQLQTDTNGT 302

Query: 152 QPLIVRGPGAGAQVTAGGIFSDILRLA 178
             L V     G   TAG + +D++ L+
Sbjct: 303 --LNVSDLYDGPYETAGAVMNDLVILS 327

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} Length = 325

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 4/80 (5%)

Query: 101 DAGEVLRYVGVVDAINK--EGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRG 158
                 R V  V   ++       +    +D     +          T       + V  
Sbjct: 244 SYNANDRLVTEVYVDDRRPVAVSRIISLNKDDFLMSIGMDGLGYQIETDSNGT--VNVSD 301

Query: 159 PGAGAQVTAGGIFSDILRLA 178
              G   TAG + +DIL L+
Sbjct: 302 IYDGPYETAGAVVNDILLLS 321

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} Length = 444

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 99  AEDAGEVLRYVGVVDAINKEGRVELRRY----KRDHPFAQLSGSDNIIAFTTKRYKEQPL 154
           AE+ G  ++ +G+  A   E  +ELR +          A + G+ N +            
Sbjct: 245 AEELGYRIKLLGI--ARRAENGIELRVHPTLIPERRLIANVDGAMNAVLVKGDAVGP--T 300

Query: 155 IVRGPGAGAQVTAGGIFSDILRLA 178
           +  G GAG++ TA  + +D++ + 
Sbjct: 301 LYYGAGAGSEPTASAVVADLVDVT 324

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} Length = 332

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 97  QEAEDAGEVLRYVGVVDAINKEGRVELRRY----KRDHPFAQLSGSDNIIAFTTKRYKEQ 152
           Q+AE  GE +R V       + GR           +DHP A+  G  N +    +   E 
Sbjct: 227 QKAEARGERVRLVAS--LFGEGGRWRAAVAPRRLPQDHPLARARG--NALWVRARPLGE- 281

Query: 153 PLIVRGPGAGAQVTAGGIFSDILRLA 178
              V GPGAG   TA G+F+D+LR  
Sbjct: 282 -AFVTGPGAGGGATASGLFADLLRFL 306

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	100.0
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	100.0
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	100.0
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	100.0
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	100.0
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	100.0

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=100.00  E-value=3.4e-44  Score=317.61  Aligned_cols=174  Identities=38%  Similarity=0.680  Sum_probs=161.8

Q ss_pred             hhhhhhhh-cccceeeeeccccc-Cc----------------------------cccCCCcCCHh-HHHHHHHHHHHHhc
Q 029942            5 FELSEKLT-TVDASIFVCGLFLC-LN----------------------------AECNSMRIRLK-KTFFLQVIILARES   53 (185)
Q Consensus         5 ~~~~~~~~-~~d~i~~~~gi~~~-~n----------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~   53 (185)
                      +...+++. .||+|.+|.||+|+ +|                            ||. |||+||+ +|+|+|++||||++
T Consensus       152 i~~l~~~l~~G~~I~~I~GIlnGT~nyil~~m~~~~~~g~~f~~~l~eAq~~GyaE~-DP~~Dv~G~D~a~Kl~ILa~~~  230 (358)
T 1ebf_A          152 ISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTEP-DPRDDLNGLDVARKVTIVGRIS  230 (358)
T ss_dssp             HHHHHHHHHHTCCEEEEEEECCHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHTCSCS-STHHHHTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCeEEEEEEEeecceeeecccccccccCCCHHHHHHHHHHcCCCCC-CcccCCCChhHHHHHHHHHHhc
Confidence            34556666 79999999999994 33                            565 9999999 99999999999999


Q ss_pred             CCCCCCCC-eeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCc
Q 029942           54 GLKLELSD-LPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPF  132 (185)
Q Consensus        54 G~~i~~~d-V~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pL  132 (185)
                      |++++++| |++++++|+++++..+.++|+++|+.+|..|++++++|+++|+++||||.++..+++++|+|+.+|++|||
T Consensus       231 g~~~~~~d~v~~egi~p~~~~~~~~~~~f~~~l~~~d~~~~~~~~~A~~~g~~iklv~~~~~~~~~~~v~~~~v~~~~pl  310 (358)
T 1ebf_A          231 GVEVESPTSFPVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHPF  310 (358)
T ss_dssp             TCCCCCTTSSCBCCCSCGGGSTTSCTHHHHHHHGGGHHHHHHHHHHHTTTTEEEEEEEEEETTTTEEEEEEEEEESSSGG
T ss_pred             CCCCCCCCeeEEeccccccccccccHHHHHhcCcccchhhHHHHHHHHHCCCEEEEEEEEEeCCCeEEEEEEEECCCCcc
Confidence            99999999 99999999999999889999999999999999999999999999999999987545899999999999999


Q ss_pred             cccCCCCeEEEEEcCcc-CCcceEEEcCCCChHHHHHHHHHHHHHHHHhc
Q 029942          133 AQLSGSDNIIAFTTKRY-KEQPLIVRGPGAGAQVTAGGIFSDILRLASYL  181 (185)
Q Consensus       133 a~v~g~~Nav~i~td~~-g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~  181 (185)
                      ++|+|++|+|.|+|+++ +  |++|+|+|||+.+||+||++||+++++++
T Consensus       311 a~v~g~~N~v~~~~~~~~~--~~~~~G~GAG~~~TA~av~~Dii~i~~~~  358 (358)
T 1ebf_A          311 ASLKGSDNVISIKTKRYTN--PVVIQGAGAGAAVTAAGVLGDVIKIAQRL  358 (358)
T ss_dssp             GGCCTTCEEEEEEESSCSS--CEEEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCEEEEEeccccCc--cEEEEecCCChHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999 6  99999999999999999999999999864

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=100.00  E-value=3.7e-40  Score=288.82  Aligned_cols=149  Identities=26%  Similarity=0.348  Sum_probs=138.3

Q ss_pred             hhhhhhhhcccceeeeeccccc-Cc-------------------------cccCCCcCCHh-HHHHHHHHHHHHhcCCCC
Q 029942            5 FELSEKLTTVDASIFVCGLFLC-LN-------------------------AECNSMRIRLK-KTFFLQVIILARESGLKL   57 (185)
Q Consensus         5 ~~~~~~~~~~d~i~~~~gi~~~-~n-------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~G~~i   57 (185)
                      +...+++.++|.|.+|.||+|+ +|                         ||. |||+||+ +|+|||++||||++|.++
T Consensus       150 i~~l~~~l~~~~I~~I~GIlnGT~nyilt~m~~~g~~f~~~l~~Aq~~GyaE~-DP~~Dv~G~D~a~Kl~ILa~~~g~~~  228 (327)
T 3do5_A          150 VKLAKRYLALCEIESVKGIFNGTCNYILSRMEEERLPYEHILKEAQELGYAEA-DPSYDVEGIDAALKLVIIANTIGVKA  228 (327)
T ss_dssp             HHHHHTTTTTSCEEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHTTSSCS-SCHHHHTSHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHhhCCCccEEEEEECCCcCcchhhcCcCCcCHHHHHHHHHHcCCCCC-CchhhcCChhHHHHHHHHHHhhCCCC
Confidence            4456677799999999999994 43                         787 9999999 999999999999999999


Q ss_pred             CCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCccccCC
Q 029942           58 ELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSG  137 (185)
Q Consensus        58 ~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pLa~v~g  137 (185)
                      +++||++     +||++++                .+|+++|+++|+++||||.++.  ++++|+|++||++|||+ |+|
T Consensus       229 ~~~dv~~-----~gi~~i~----------------~~~~~~A~~~g~~iklv~~~~~--~~~~V~p~~v~~~~pla-v~g  284 (327)
T 3do5_A          229 SYEDVEV-----TGITQIT----------------PEAFQVAAEKGYTIRLIAEVSR--EKLKVSPRLVPFHHPLA-IKG  284 (327)
T ss_dssp             CGGGSEE-----CCSTTCC----------------HHHHHHHHTTTEEEEEEEEESS--SCEEEEEEEEETTSGGG-CCS
T ss_pred             CHHHeee-----eCCCCCC----------------HHHHHHHHHCCCEEEEEEEEEC--CeEEEEEEEECCCCceE-ECC
Confidence            9999999     7899998                5899999999999999999963  47999999999999999 999


Q ss_pred             CCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHh
Q 029942          138 SDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASY  180 (185)
Q Consensus       138 ~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~  180 (185)
                      ++|+|.|+|+++|  +++|+|+|||+.+||+||++||+++++.
T Consensus       285 ~~N~v~~~~~~~g--~~~~~G~GAG~~~TA~av~~Di~~i~~~  325 (327)
T 3do5_A          285 TMNAAMFKTDTAG--SIFVAGRGAGKEETASAILSDLYEIYAG  325 (327)
T ss_dssp             SCEEEEEEESSSC--EEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_pred             CceEEEEEecccC--cEEEEeCCCCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999  9999999999999999999999999874

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=100.00  E-value=2.9e-39  Score=293.56  Aligned_cols=153  Identities=18%  Similarity=0.253  Sum_probs=141.4

Q ss_pred             hhhhhhhhcccceeeeeccccc-Cc-------------------------cccCCCcCCHh-HHHHHHHHHHHHh-cCCC
Q 029942            5 FELSEKLTTVDASIFVCGLFLC-LN-------------------------AECNSMRIRLK-KTFFLQVIILARE-SGLK   56 (185)
Q Consensus         5 ~~~~~~~~~~d~i~~~~gi~~~-~n-------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~-~G~~   56 (185)
                      +...+++.++|.|..|.||+|+ +|                         ||+ |||+||+ +|+|+|++||||+ +|.+
T Consensus       145 i~~LrelL~~~~Ig~I~GIlnGT~nyilt~m~~~g~~f~~~l~eAq~lGyaE~-DP~~Dv~G~Daa~Kl~ILa~~a~g~~  223 (444)
T 3mtj_A          145 IKALREGLTANRIEWLAGIINGTSNFILSEMRDKGAAFDDVLKEAQRLGYAEA-DPTFDIEGIDAAHKLTILSAIAFGIP  223 (444)
T ss_dssp             HHHHHTTTTTSCEEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHTSSCS-SCHHHHTSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhCCCCceEEEEEcCCcccccccCCCCCCCHHHHHHHHHHcCCCcC-CccceecChhHHHHHHHHHHHHcCCC
Confidence            3456677799999999999994 43                         787 9999999 9999999999998 5999


Q ss_pred             CCCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCC--eEEEEEEEecCCCCccc
Q 029942           57 LELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINK--EGRVELRRYKRDHPFAQ  134 (185)
Q Consensus        57 i~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~--~~~V~p~~vp~~~pLa~  134 (185)
                      ++++||++     +||++++                ..|+++|++.|+++||||.+++.++  +++|+|++||++|||++
T Consensus       224 ~~~~dv~~-----egi~~i~----------------~~d~~~A~~~g~~ikl~~~~~~~~~~~~~~V~p~~vp~~~pla~  282 (444)
T 3mtj_A          224 MQFERAYT-----EGISQLT----------------REDVRYAEELGYRIKLLGIARRAENGIELRVHPTLIPERRLIAN  282 (444)
T ss_dssp             CCGGGCEE-----CCSTTCC----------------HHHHHHHHHTTEEEEEEEEEEECSSSEEEEEEEEEEETTSTGGG
T ss_pred             CCHHHeee-----ecCCCCC----------------HHHHHHHHHCCCEEEEEEEEEEcCCcEEEEEEEEEECCCCcccc
Confidence            99999999     7999998                5889999999999999999987543  79999999999999999


Q ss_pred             cCCCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhc
Q 029942          135 LSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL  181 (185)
Q Consensus       135 v~g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~  181 (185)
                      |+|++|+|.|+|+.+|  |++|+|+|||+.+||+||++||+++++++
T Consensus       283 v~g~~Nav~~~~~~~g--~~~~~G~GAG~~~TAsaV~~Dii~i~~~~  327 (444)
T 3mtj_A          283 VDGAMNAVLVKGDAVG--PTLYYGAGAGSEPTASAVVADLVDVTRLH  327 (444)
T ss_dssp             CCTTEEEEEEEETTTE--EEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEEecccC--cEEEEcCCCCHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999  99999999999999999999999999864

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=100.00  E-value=4.4e-37  Score=270.02  Aligned_cols=150  Identities=25%  Similarity=0.339  Sum_probs=138.6

Q ss_pred             hhhhhhhhcccceeeeeccccc-Cc------------------------cccCCCcCCHh-HHHHHHHHHHHHh-cCCCC
Q 029942            5 FELSEKLTTVDASIFVCGLFLC-LN------------------------AECNSMRIRLK-KTFFLQVIILARE-SGLKL   57 (185)
Q Consensus         5 ~~~~~~~~~~d~i~~~~gi~~~-~n------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~-~G~~i   57 (185)
                      +...+ ...+++|..|.||+|+ +|                        +|. ||++|++ +|+|+|+.|||++ +|.++
T Consensus       131 i~~l~-~l~~~~I~~I~gI~nGT~nyil~~m~~g~~f~~~l~eAq~~GyaE~-dP~~Dv~G~d~a~Kl~iLa~~~~G~~~  208 (332)
T 2ejw_A          131 LSFLE-TLRGSELLELHGILNGTTLYILQEMEKGRTYAEALLEAQRLGYAEA-DPTLDVEGIDAAHKLTLLARLLVDPGF  208 (332)
T ss_dssp             HHHHH-HHTTSEEEEEEEECCHHHHHHHHHHHTTCCHHHHHHHHHHTTSSCS-SCHHHHTTHHHHHHHHHHHHHHTCTTC
T ss_pred             HHHHH-HhcCCCcceEEEEEecccccccCccccCCCHHHHHHHHHHCCCCCC-CCccccCchhHHHHHHHHHHHHhCCCC
Confidence            34556 7799999999999994 43                        667 9999999 9999999999999 89999


Q ss_pred             CCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCC--eEEEEEEEecCCCCcccc
Q 029942           58 ELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINK--EGRVELRRYKRDHPFAQL  135 (185)
Q Consensus        58 ~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~--~~~V~p~~vp~~~pLa~v  135 (185)
                      +++||++     +||++++                .+|+++|++.|+++||||.+++.++  +++|+|+++|++|||++|
T Consensus       209 ~~~~v~~-----egi~~i~----------------~~di~~a~~~g~~ikl~~~~~~~~~~~~~~V~p~~v~~~~pla~v  267 (332)
T 2ejw_A          209 PFAEVEA-----QGIARLT----------------PEVLQKAEARGERVRLVASLFGEGGRWRAAVAPRRLPQDHPLARA  267 (332)
T ss_dssp             CGGGCEE-----CCSTTCC----------------HHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEEEEETTSHHHHC
T ss_pred             CHHHeEe-----cCcCcCC----------------HHHHHHHHHCCCEEEEEEEEEecCCcEEEEEEEEEECCCChhhcC
Confidence            9999999     7999998                5899999999999999999988655  699999999999999999


Q ss_pred             CCCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhc
Q 029942          136 SGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL  181 (185)
Q Consensus       136 ~g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~  181 (185)
                      +|  |+|.|+|+.+|  +++|+|+|||+.+||+||++||+++++..
T Consensus       268 ~g--N~v~~~~~~~g--~~~~~G~GAG~~~TAsav~~Di~~i~~~~  309 (332)
T 2ejw_A          268 RG--NALWVRARPLG--EAFVTGPGAGGGATASGLFADLLRFLSGA  309 (332)
T ss_dssp             SS--EEEEEEEETTE--EEEEEECCSSHHHHHHHHHHHHHHHHTTC
T ss_pred             CC--CEEEeeccccC--cEEEEeCCCChHHHHHHHHHHHHHHHHhc
Confidence            99  99999999999  99999999999999999999999999864

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=100.00  E-value=1.8e-36  Score=265.09  Aligned_cols=144  Identities=17%  Similarity=0.157  Sum_probs=129.9

Q ss_pred             hhhhhhhcccceeeeeccccc-Cc------------------------cccCCCcCCHh-HHHHHHHHHHHHh-cCCCCC
Q 029942            6 ELSEKLTTVDASIFVCGLFLC-LN------------------------AECNSMRIRLK-KTFFLQVIILARE-SGLKLE   58 (185)
Q Consensus         6 ~~~~~~~~~d~i~~~~gi~~~-~n------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~-~G~~i~   58 (185)
                      ...+++..+|+|..|.||+|+ +|                        ||. ||++|++ +|+|+|++||||+ +|.+++
T Consensus       157 ~~l~~~l~g~~I~~I~GI~nGT~nyil~~m~~g~~f~~~l~eAq~~GyaE~-dP~~Dv~G~D~a~Kl~iLa~~a~g~~~~  235 (331)
T 3c8m_A          157 SFIDYSVLPSRIKKFRGIVSLTINYFIRELANKREFDDVLSEATKLGIVEK-NYKDDLTGLDAARKSVILCNHLYGSSYR  235 (331)
T ss_dssp             HHHHHHSTTCCCCEEEEECCHHHHHHHHHHHTTCCHHHHHHHHHHHTSSCS-SCHHHHTTHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHhhcCcccEEEEEEeccceeEecchhcCCCHHHHHHHHHHcCCCCC-CcccCCCCccHHHHHHHHHHHHhCCCCC
Confidence            344556679999999999994 43                        777 9999999 9999999999997 799999


Q ss_pred             CCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCC--eEEEEEEEecCCCCccccC
Q 029942           59 LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINK--EGRVELRRYKRDHPFAQLS  136 (185)
Q Consensus        59 ~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~--~~~V~p~~vp~~~pLa~v~  136 (185)
                      ++||++     +||++++ .               +       .|+++||||.+++.++  +++|+|++||++|||++|+
T Consensus       236 ~~~v~~-----~gi~~~~-~---------------~-------~g~~ikl~~~~~~~~~~~~~~V~p~~v~~~~pla~v~  287 (331)
T 3c8m_A          236 LSDVFY-----EGILDQD-R---------------S-------FGKNERLVTETGIVNGKPSAESRIKSLDSNDYLLTLG  287 (331)
T ss_dssp             GGGSEE-----CCCC-CC-C---------------C-------CCTTEEEEEEEEEETTEEEEEEEEEECCTTCGGGGSC
T ss_pred             hhheEE-----eCcccCC-h---------------h-------cCCEEEEEEEEEEcCCcEEEEEEEEEECCCCccccCC
Confidence            999999     7898887 2               1       8999999999997655  7999999999999999999


Q ss_pred             CCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHh
Q 029942          137 GSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASY  180 (185)
Q Consensus       137 g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~  180 (185)
                      |++|+|.|+|+.+|  +++|+|+|||+.+||+||++||++++++
T Consensus       288 g~~N~v~~~~~~~g--~~~~~G~GAG~~~TA~av~~Di~~i~~~  329 (331)
T 3c8m_A          288 KGSLGYQLQTDTNG--TLNVSDLYDGPYETAGAVMNDLVILSMF  329 (331)
T ss_dssp             TTCCEEEEECSSSC--EEEEECSSCCHHHHHHHHHHHHHHHHC-
T ss_pred             CCcEEEEeeccccC--cEEEEeCCCChHHhHHHHHHHHHHHHhc
Confidence            99999999999999  9999999999999999999999999875

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=100.00  E-value=2.4e-36  Score=264.59  Aligned_cols=141  Identities=19%  Similarity=0.161  Sum_probs=127.7

Q ss_pred             hhhhhhhcccceeeeeccccc-Cc------------------------cccCCCcCCHh-HHHHHHHHHHHHhc-CCCCC
Q 029942            6 ELSEKLTTVDASIFVCGLFLC-LN------------------------AECNSMRIRLK-KTFFLQVIILARES-GLKLE   58 (185)
Q Consensus         6 ~~~~~~~~~d~i~~~~gi~~~-~n------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~-G~~i~   58 (185)
                      ..++++..+|+|.+|.||||+ +|                        ||. |||+||+ +|+|||++||||++ |.+++
T Consensus       153 ~~l~~~l~g~~I~~i~Gi~nGT~nyil~~m~~g~~f~~~l~~Aq~~GyaE~-DP~~Dv~G~D~a~Kl~ILa~~~~g~~~~  231 (325)
T 3ing_A          153 SVLDYSILPSKVKRFRGIVSSTINYVIRNMANGRSLRDVVDDAIKKGIAES-NPQDDLNGLDAARKSVILVNHIFGTEYT  231 (325)
T ss_dssp             HHHHHTCTTCCEEEEEEECCHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCS-STHHHHTTHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHhhCCCeeEEEEEEEeeeeEEeecccCCCCHHHHHHHHHHcCCCCC-CcccccCChhHHHHHHHHHHHHcCCCCC
Confidence            455666799999999999994 43                        787 9999999 99999999999995 99999


Q ss_pred             CCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEe--cCCCCccccC
Q 029942           59 LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRY--KRDHPFAQLS  136 (185)
Q Consensus        59 ~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~v--p~~~pLa~v~  136 (185)
                      ++||++     +||++++ +               ++++         ||||.+++.+++++|+|+++  |++|||+ |+
T Consensus       232 ~~~v~~-----~gi~~~~-~---------------~~~~---------k~v~~~~~~~~~~~V~p~~~~~~~~~pla-v~  280 (325)
T 3ing_A          232 LNDVEY-----SGVDERS-Y---------------NAND---------RLVTEVYVDDRRPVAVSRIISLNKDDFLM-SI  280 (325)
T ss_dssp             GGGSBC-----CCCCSSC-C---------------CTTE---------EEEEEEEEETTEEEEEEEEEECCTTCGGG-GS
T ss_pred             HHHeee-----eCcCcCC-H---------------HHHh---------CceEEEEecCCEEEEEEEEEcCCCCCcee-eC
Confidence            999999     7888887 2               2232         99999998778999999999  9999999 99


Q ss_pred             CCCeEE-EEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHh
Q 029942          137 GSDNII-AFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASY  180 (185)
Q Consensus       137 g~~Nav-~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~  180 (185)
                      |++|+| .|+|+++|  +++|+|+|||+.+||+||++||+++++.
T Consensus       281 g~~n~v~~~~~~~~g--~~~~~G~GAG~~~TA~av~~Di~~~~~~  323 (325)
T 3ing_A          281 GMDGLGYQIETDSNG--TVNVSDIYDGPYETAGAVVNDILLLSKV  323 (325)
T ss_dssp             CTTCCEEEEEESSSC--EEEEECSCCCHHHHHHHHHHHHHHHHTC
T ss_pred             CCceEEEEEEccccC--cEEEEcCCCChHHHHHHHHHHHHHHHhh
Confidence            999999 99999999  9999999999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d1ebfa2	190	d.81.1.2 (A:151-340) Homoserine dehydrogenase {Bak	2e-23

>d1ebfa2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 190

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Homoserine dehydrogenase-like
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.9 bits (222), Expect = 2e-23
 Identities = 50/119 (42%), Positives = 81/119 (68%), Gaps = 2/119 (1%)

Query: 45  QVIILARESGLKLE-LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAG 103
           +V I+ R SG+++E  +  PV+S +P+PL++  SA+EF+++L  +DK+L + ++EA    
Sbjct: 73  KVTIVGRISGVEVESPTSFPVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATEN 132

Query: 104 EVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAG 162
           +VLR++G VD   K   V + +Y   HPFA L GSDN+I+  TKRY   P++++G GAG
Sbjct: 133 KVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTKRYT-NPVVIQGAGAG 190

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1ebfa2	190	Homoserine dehydrogenase {Baker's yeast (Saccharom	100.0

>d1ebfa2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Homoserine dehydrogenase-like
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-37  Score=250.09  Aligned_cols=154  Identities=36%  Similarity=0.622  Sum_probs=141.2

Q ss_pred             hhhhhh-cccceeeeecccc-cCc----------------------------cccCCCcCCHh-HHHHHHHHHHHHhc-C
Q 029942            7 LSEKLT-TVDASIFVCGLFL-CLN----------------------------AECNSMRIRLK-KTFFLQVIILARES-G   54 (185)
Q Consensus         7 ~~~~~~-~~d~i~~~~gi~~-~~n----------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~-G   54 (185)
                      ..+.+. .||+|.+|+||+| |+|                            ||+ |||+||+ +|+|+|++||||++ |
T Consensus         5 ~l~~~l~~gd~I~~i~GIlNGT~NyILt~m~~~~~~g~~f~~al~~Aq~lGyaE~-DPt~Dv~G~Daa~Kl~ILa~~a~~   83 (190)
T d1ebfa2           5 FLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTEP-DPRDDLNGLDVARKVTIVGRISGV   83 (190)
T ss_dssp             HHHHHHHHTCCEEEEEEECCHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHTCSCS-STHHHHTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhccCeEEEEEEEEeccHHHHHHHhhhcccCCccHHHHHHHHHhcCccCC-CchhhhhcchHHHHHHHHHHHHcC
Confidence            345555 7899999999999 444                            777 9999999 99999999999995 7


Q ss_pred             CCCCCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCccc
Q 029942           55 LKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQ  134 (185)
Q Consensus        55 ~~i~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pLa~  134 (185)
                      ..+.++||.++++.|+||+.+++.+.|++++..+|..+....+.|..+|+++|++++++..++.++|+|++||.+|||++
T Consensus        84 ~~~~~~~v~~~~i~~~gi~~i~~~d~~~~~~~~~~~~~~~~~~~a~~~~~~l~~v~~~~~~~~~~~V~p~~vp~~~pLa~  163 (190)
T d1ebfa2          84 EVESPTSFPVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHPFAS  163 (190)
T ss_dssp             CCCCTTSSCBCCCSCGGGSTTSCTHHHHHHHGGGHHHHHHHHHHHTTTTEEEEEEEEEETTTTEEEEEEEEEESSSGGGG
T ss_pred             CccCchhcccccccccchhccchHHHHHHhccCcchHHHHHHHHhhhcCceEEEEEEEecCCccccccceeeCCCCeeee
Confidence            78889999999999999999998899999999999999999999999999999999998777799999999999999999


Q ss_pred             cCCCCeEEEEEcCccCCcceEEEcCCCC
Q 029942          135 LSGSDNIIAFTTKRYKEQPLIVRGPGAG  162 (185)
Q Consensus       135 v~g~~Nav~i~td~~g~~~l~v~G~GAG  162 (185)
                      |+|++|+|.|+|+++. ++++|+|+|||
T Consensus       164 v~G~~NaV~i~t~~~~-g~l~~~G~GAG  190 (190)
T d1ebfa2         164 LKGSDNVISIKTKRYT-NPVVIQGAGAG  190 (190)
T ss_dssp             CCTTCEEEEEEESSCS-SCEEEEECCCC
T ss_pred             cCCCcEEEEEEecCCC-CcEEEEecCCC
Confidence            9999999999999763 29999999998