Citrus Sinensis ID: 029947

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSVAIKKD
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHcccEccHHHEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccHHccc
Coil and Loop (DISEMBL)
MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGfayggpfghFLHKLMDIIFKGKKDKKTVAKKVLLEQltsspwnnfLFMMYYGLVVEGRSWSLVknkvrkdypsvqltawrfwpivgwvnyqyipLQFRVVFHSFVASCWAIFLNLKARSVAIKKD
Flexible Loop (DISEMBL)
MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLeqltsspwnnFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSVAIKKD
Low Complexity Region (SEG)
MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKlqltrllllMFYGFAYGGPFGHFLHKLMDIIFkgkkdkktvakkVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSVAIKKD
Disordered region (IsUnstruct)
******EAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSV*****
Disordered Region (DISOPRED)
****AKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLN***********
Disordered Region (DISEMBL)
MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSVAIKKD
Disordered Region (DISPRO)
MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSV*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSVAIKKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q9ZS51	190	Peroxisomal membrane prot	no	no	0.978	0.952	0.574	8e-61
Q07066	194	Peroxisomal membrane prot	yes	no	0.913	0.871	0.311	2e-17
Q54FR4	185	PXMP2/4 family protein 4	yes	no	0.897	0.897	0.337	3e-17
Q54GD8	184	PXMP2/4 family protein 3	no	no	0.881	0.885	0.283	7e-17
Q2KIY1	196	Peroxisomal membrane prot	yes	no	0.918	0.867	0.309	5e-16
Q66GV0	177	Protein Mpv17 OS=Xenopus	N/A	no	0.908	0.949	0.317	7e-16
Q5BK62	176	Protein Mpv17 OS=Rattus n	no	no	0.918	0.965	0.302	1e-14
Q54XX9	193	PXMP2/4 family protein 2	no	no	0.902	0.865	0.272	1e-14
P19258	176	Protein Mpv17 OS=Mus musc	no	no	0.913	0.960	0.304	2e-14
P42925	194	Peroxisomal membrane prot	yes	no	0.794	0.757	0.310	2e-14

>sp|Q9ZS51|PMP22_ARATH Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1

 Score =  232 bits (592), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 104/181 (57%), Positives = 140/181 (77%)

Query: 2   SDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGF 61
           S   K   ++YL QLQ HPLRTKAITAG+L+G SD ++QK+SG++K+QL R+LL + +  
Sbjct: 4   SPPKKTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAG 63

Query: 62  AYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSWS 121
            + GP GHF H  +D  FKGKKD +TVAKKV+LEQLT SP N+ LFM+YYG+V+E   W+
Sbjct: 64  GFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWT 123

Query: 122 LVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSVA 181
           LV+ +++K YP+VQLTAW F+P+VGW+NY+Y+PL FRV+ HS VA  W IFL L+ARS+ 
Sbjct: 124 LVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRARSMT 183

Query: 182 I 182
           +
Sbjct: 184 L 184

May be involved in the metabolism of reactive oxygen species.
Arabidopsis thaliana (taxid: 3702)

>sp|Q07066|PXMP2_RAT Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 104/180 (57%), Gaps = 11/180 (6%)

Query: 1   MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKK-----LQLTRLLL 55
           +  + K A  +YL+ L+ +P+ TKA+++GIL+   + +AQ I   +K     L+++ LL 
Sbjct: 14  LRSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLR 73

Query: 56  LMFYGFAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGL-V 114
            + YG    GP  H+L+  M+     +     V K++LL++L  +P   FL + ++ + +
Sbjct: 74  YLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARV-KRLLLDRLFFAP--TFLLLFFFVMNL 130

Query: 115 VEGRSWSLVKNKVRKDY-PSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 173
           +EG++ S+   K+R  + P++Q+  WR W  + ++N  Y+PLQFRV+F +  A  W  +L
Sbjct: 131 LEGKNISVFVAKMRSGFWPALQMN-WRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q54FR4|PX24D_DICDI PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 6/172 (3%)

Query: 6   KEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKI----SGVKKLQLTRLLLLMFYGF 61
           K A   YL QL  +P+ TKA+T+G L   SD++ Q I       KK    R + +  +GF
Sbjct: 9   KLAQSHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGF 68

Query: 62  AYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSWS 121
           A  GP  H+  K +D  F  KK  +    K+ ++Q+  SP  NFLF    G ++EG+S  
Sbjct: 69  AVTGPLFHYWFKYLDKHFP-KKSYRHAFIKLTIDQVVCSPVFNFLFFSGMG-ILEGKSKD 126

Query: 122 LVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 173
            +  K++KD+ +  ++    WP + +VN+ YI    RV F +     W  FL
Sbjct: 127 DIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFL 178

Dictyostelium discoideum (taxid: 44689)

>sp|Q54GD8|PX24C_DICDI PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 93/166 (56%), Gaps = 3/166 (1%)

Query: 12  YLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHFL 71
           Y+ +L+  P++TKA+T+  L+  S  +AQK    KK+    ++    +G     P  H+ 
Sbjct: 17  YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGLI-SSPLVHYW 75

Query: 72  HKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDY 131
           H ++D +FK  KDK     K++++QL  +P+ N  F      +++G+  S++       +
Sbjct: 76  HIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLA-ILDGKPKSILFKLYFDLF 134

Query: 132 PSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKA 177
           P+++  +W+ WP+   +N++++P   RV+F + V  CW I+L++ A
Sbjct: 135 PTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILA 179

Dictyostelium discoideum (taxid: 44689)

>sp|Q2KIY1|PXMP2_BOVIN Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3

 Score = 84.0 bits (206), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 11/181 (6%)

Query: 1   MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKI-------SGVKKLQLTRL 53
           +  + + A  +YL  L+++P+ TKA T+GIL+   + +AQ I       +  +KL ++  
Sbjct: 14  LGPLPRRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGP 73

Query: 54  LLLMFYGFAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGL 113
           L    YGF + GP GHF + LM+     +     + K++LL++L  +P    LF +    
Sbjct: 74  LRYAIYGFFFTGPLGHFFYLLMERWIPSEVPLAGI-KRLLLDRLLFAPAFLSLFFLVMNF 132

Query: 114 VVEGRSWSLVKNKVRKDY-PSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIF 172
           + EG+  +    K++  + P++++  WR W  V ++N  YIP+QFRV+F + VA  W  +
Sbjct: 133 L-EGQDTAAFAAKMKSGFWPALRMN-WRVWTPVQFININYIPVQFRVLFANLVALFWYAY 190

Query: 173 L 173
           L
Sbjct: 191 L 191

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Bos taurus (taxid: 9913)

>sp|Q66GV0|MPV17_XENLA Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2

 Score = 83.6 bits (205), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 5/173 (2%)

Query: 9   WRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKI---SGVKKLQLTRLLLLMFYGFAYGG 65
           WR Y   L  HP + + +TAG L G  D I+Q++    G+K   + R + +M  GF + G
Sbjct: 5   WRAYQRLLGAHPWKVQIVTAGSLVGVGDVISQQLLERKGLKGHSIERTVKMMGIGFCFVG 64

Query: 66  PFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKN 125
           P     +K++D I  G   K    KK+LL+Q+  +P     F+      + G S   +  
Sbjct: 65  PVVGGWYKILDRIIPGS-GKPVALKKMLLDQVAFAPCFLGCFLSIAS-ALNGLSGEQIWG 122

Query: 126 KVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKAR 178
           K+++DY    +T +  WP V   N+ +IPL  R+    FVA  W  +L+ KA 
Sbjct: 123 KLKRDYKDALITNYYIWPAVQVANFYFIPLYHRLAVVQFVAIIWNSYLSWKAN 175

Involved in mitochondria homeostasis.

Xenopus laevis (taxid: 8355)

>sp|Q5BK62|MPV17_RAT Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 5/175 (2%)

Query: 9   WRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKI---SGVKKLQLTRLLLLMFYGFAYGG 65
           WR Y   L  HP + + +TAG L G  D I+Q++    G+++ Q  R L +   G  + G
Sbjct: 4   WRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQQHQTGRTLTMASLGCGFVG 63

Query: 66  PFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKN 125
           P     ++++D +  G   K    KK+LL+Q   +P     F+   G V+ G S      
Sbjct: 64  PVVGGWYRVLDHLIPGTT-KVNALKKMLLDQGGFAPCFLGCFLPLVG-VLNGMSAQDNWA 121

Query: 126 KVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSV 180
           K+++DYP   +T +  WP V   N+  +PL +R+     VA  W  +L+ KA  +
Sbjct: 122 KLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVVWNSYLSWKAHQL 176

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Rattus norvegicus (taxid: 10116)

>sp|Q54XX9|PX24B_DICDI PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 9/176 (5%)

Query: 6   KEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKIS-------GVKKLQLTRLLLLMF 58
           ++ W  YL  L  HPL TK+++ G L G  D +AQ++           KL   R+  +  
Sbjct: 2   RKLWGLYLGLLDNHPLVTKSLSTGFLMGTGDILAQRLEHKFKDEKSQFKLDYKRVATMST 61

Query: 59  YGFAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGR 118
            G  Y GP  H+ ++ +DI+ KG + +  + KK+L++QL  +P     FM     +    
Sbjct: 62  VGIFYSGPMLHYWYRSLDIMVKG-EGRSVIIKKMLIDQLLFAPVAIGGFMTVTNFINNKG 120

Query: 119 SWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLN 174
               ++N  ++ + +V++  W  WP    +N+  +P   RV++ S ++  W +FL+
Sbjct: 121 ELKNLENFTKELFYAVKIN-WLIWPAAQIINFSLVPPNLRVLYSSIISIFWGMFLS 175

Dictyostelium discoideum (taxid: 44689)

>sp|P19258|MPV17_MOUSE Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 5/174 (2%)

Query: 9   WRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKI---SGVKKLQLTRLLLLMFYGFAYGG 65
           WR Y   L  HP + + +TAG L G  D I+Q++    G+++ Q  R L ++  G  + G
Sbjct: 4   WRAYQRALAAHPWKVQVLTAGSLMGVGDMISQQLVERRGLQQHQAGRTLTMVSLGCGFVG 63

Query: 66  PFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKN 125
           P     +K++D +  G   K    KK+LL+Q   +P     F+   G ++ G S      
Sbjct: 64  PVVGGWYKVLDHLIPGTT-KVHALKKMLLDQGGFAPCFLGCFLPLVG-ILNGMSAQDNWA 121

Query: 126 KVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARS 179
           K+++DYP   +T +  WP V   N+  +PL +R+     VA  W  +L+ KA  
Sbjct: 122 KLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAIVWNSYLSWKAHQ 175

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Mus musculus (taxid: 10090)

>sp|P42925|PXMP2_MOUSE Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=2 SV=2

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 92/158 (58%), Gaps = 11/158 (6%)

Query: 23  TKAITAGILAGCSDAIAQKISGVKK-----LQLTRLLLLMFYGFAYGGPFGHFLHKLMDI 77
           TKA+++GIL+   + +AQ I   ++     L+++ LL  + YG    GP  H+L+  M+ 
Sbjct: 36  TKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLRYLVYGLFVTGPLSHYLYLFMEY 95

Query: 78  IFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGL-VVEGRSWSLVKNKVRKDY-PSVQ 135
               +    +V K++LL++L  +P   FL + ++ + ++EG++ S+   K+R  + P++Q
Sbjct: 96  SVPPEVPWASV-KRLLLDRLFFAP--TFLLLFFFVMNLLEGKNVSVFVAKMRSGFWPALQ 152

Query: 136 LTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 173
           +  WR W  + ++N  Y+PLQFRV+F +  A  W  +L
Sbjct: 153 MN-WRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
147795757	185	hypothetical protein VITISV_012682 [Viti	0.994	0.994	0.858	4e-91
225433201	185	PREDICTED: peroxisomal membrane protein	0.994	0.994	0.853	7e-91
297800820	185	predicted protein [Arabidopsis lyrata su	0.994	0.994	0.842	4e-88
79325105	185	Peroxisomal membrane 22 kDa (Mpv17/PMP22	0.994	0.994	0.836	1e-87
449458842	183	PREDICTED: peroxisomal membrane protein	0.972	0.983	0.816	5e-84
449520295	183	PREDICTED: LOW QUALITY PROTEIN: peroxiso	0.972	0.983	0.816	5e-84
351727218	185	uncharacterized protein LOC100527292 [Gl	0.989	0.989	0.792	2e-81
195611428	187	peroxisomal membrane protein PMP22 [Zea	0.994	0.983	0.751	4e-78
115477897	187	Os08g0566900 [Oryza sativa Japonica Grou	0.994	0.983	0.751	5e-78
388498670	185	unknown [Lotus japonicus]	0.994	0.994	0.771	2e-77

>gi|147795757|emb|CAN76530.1| hypothetical protein VITISV_012682 [Vitis vinifera]

 Score =  338 bits (868), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 158/184 (85%), Positives = 170/184 (92%)

Query: 1   MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYG 60
           MSD+ K AWR YL+QLQ+HPLRTKAITAG+L GCSD IAQKISG+K+LQL RL+L+M YG
Sbjct: 1   MSDLIKAAWRNYLLQLQLHPLRTKAITAGVLVGCSDVIAQKISGIKRLQLRRLILMMLYG 60

Query: 61  FAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSW 120
           FAY GPFGHFLHKLMDIIF+GKKD  TVAKKV+LEQLTSSPWNN  FMMYYGLVVEGR W
Sbjct: 61  FAYSGPFGHFLHKLMDIIFRGKKDNTTVAKKVVLEQLTSSPWNNMFFMMYYGLVVEGRGW 120

Query: 121 SLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSV 180
            LVKNKVRKDYPSVQLTAW+FWPIVGWVNYQY+PLQFRVVFHSFVASCWAIFLNLKARSV
Sbjct: 121 GLVKNKVRKDYPSVQLTAWKFWPIVGWVNYQYMPLQFRVVFHSFVASCWAIFLNLKARSV 180

Query: 181 AIKK 184
           AIKK
Sbjct: 181 AIKK 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433201|ref|XP_002285350.1| PREDICTED: peroxisomal membrane protein PMP22 [Vitis vinifera] gi|296083689|emb|CBI23678.3| unnamed protein product [Vitis vinifera]

 Score =  338 bits (866), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 157/184 (85%), Positives = 170/184 (92%)

Query: 1   MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYG 60
           MSD+ K AWR YL+QLQ+HPLRTKAITAG+L GCSD IAQKISG+K+LQL RL+L+M YG
Sbjct: 1   MSDLIKAAWRNYLLQLQLHPLRTKAITAGVLVGCSDVIAQKISGIKRLQLRRLILMMLYG 60

Query: 61  FAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSW 120
           FAY GPFGHFLHKLMDIIF+GKKD  TVAKKV+LEQLTSSPWNN  FMMYYGLVVEGR W
Sbjct: 61  FAYSGPFGHFLHKLMDIIFRGKKDNTTVAKKVVLEQLTSSPWNNMFFMMYYGLVVEGRGW 120

Query: 121 SLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSV 180
            LV+NKVRKDYPSVQLTAW+FWPIVGWVNYQY+PLQFRVVFHSFVASCWAIFLNLKARSV
Sbjct: 121 GLVRNKVRKDYPSVQLTAWKFWPIVGWVNYQYMPLQFRVVFHSFVASCWAIFLNLKARSV 180

Query: 181 AIKK 184
           AIKK
Sbjct: 181 AIKK 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800820|ref|XP_002868294.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297314130|gb|EFH44553.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  328 bits (842), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 155/184 (84%), Positives = 166/184 (90%)

Query: 1   MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYG 60
           MSD+AK+AWRKYLIQLQ HPLRTKAITAG+L GCSDAIAQKISGVK++Q  RLLLLM YG
Sbjct: 1   MSDLAKDAWRKYLIQLQAHPLRTKAITAGVLTGCSDAIAQKISGVKRIQFRRLLLLMLYG 60

Query: 61  FAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSW 120
           FAYGGPFGHF HKLMD IFKGKK   TVAKKVLLEQLTSSPWNNFLFM YYGLVVEGR W
Sbjct: 61  FAYGGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVEGRPW 120

Query: 121 SLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSV 180
            LVK KV KDYP++QLTAW+FWPIVGWVNYQY+PLQFRV+F SFVASCW+IFLNLKARS 
Sbjct: 121 KLVKQKVGKDYPTIQLTAWKFWPIVGWVNYQYVPLQFRVLFSSFVASCWSIFLNLKARSP 180

Query: 181 AIKK 184
           AIK 
Sbjct: 181 AIKN 184

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79325105|ref|NP_001031637.1| Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana] gi|62321523|dbj|BAD95003.1| hypothetical protein [Arabidopsis thaliana] gi|98961831|gb|ABF59245.1| unknown protein [Arabidopsis thaliana] gi|332658013|gb|AEE83413.1| Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana]

 Score =  327 bits (838), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 154/184 (83%), Positives = 167/184 (90%)

Query: 1   MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYG 60
           MSD+AK+AWRKYLIQLQ HPLRTKAITAG+LAGCSDAIAQKISGVK++Q  RLLLLM YG
Sbjct: 1   MSDLAKDAWRKYLIQLQAHPLRTKAITAGVLAGCSDAIAQKISGVKRIQFRRLLLLMLYG 60

Query: 61  FAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSW 120
           FAYGGPFGHF HKLMD IFKGKK   TVAKKVLLEQLTSSPWNNFLFM YYGLVVEGR W
Sbjct: 61  FAYGGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVEGRPW 120

Query: 121 SLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSV 180
            LVK+K+ KDYP++QLTAW+FWPIVGWVNYQY+PLQFRV+F SFVASCW+IFLNLKARS 
Sbjct: 121 KLVKHKLGKDYPTIQLTAWKFWPIVGWVNYQYVPLQFRVLFSSFVASCWSIFLNLKARSP 180

Query: 181 AIKK 184
            IK 
Sbjct: 181 VIKN 184

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458842|ref|XP_004147155.1| PREDICTED: peroxisomal membrane protein PMP22-like [Cucumis sativus]

 Score =  315 bits (807), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 147/180 (81%), Positives = 161/180 (89%)

Query: 1   MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYG 60
           MS +  EAW+ YL+QLQ +PLRTKAITAG+LAG SD++AQKISG+KKLQ  RLLLLM YG
Sbjct: 1   MSSIVTEAWQGYLLQLQKNPLRTKAITAGVLAGISDSVAQKISGIKKLQFRRLLLLMLYG 60

Query: 61  FAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSW 120
           FAY GPFGHFLHKLMD IFKGKK   TVAKKVLLEQ+TSSPWNN  FMMYYGLVVEGR W
Sbjct: 61  FAYAGPFGHFLHKLMDRIFKGKKGNTTVAKKVLLEQVTSSPWNNLFFMMYYGLVVEGRPW 120

Query: 121 SLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSV 180
           SLVK KVRKDYP++QLTAWRFWPIVGWVNYQY+P+QFRV+FHSFVASCW IFLNLKARSV
Sbjct: 121 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPIQFRVIFHSFVASCWGIFLNLKARSV 180

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520295|ref|XP_004167169.1| PREDICTED: LOW QUALITY PROTEIN: peroxisomal membrane protein PMP22-like [Cucumis sativus]

 Score =  315 bits (807), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 147/180 (81%), Positives = 162/180 (90%)

Query: 1   MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYG 60
           MS +  EAW+ YL+QLQ +PLRTKAITAG+LAG SD++AQKISG+KKLQ  RLLLLM YG
Sbjct: 1   MSSIVTEAWQGYLLQLQKNPLRTKAITAGVLAGISDSVAQKISGIKKLQFRRLLLLMLYG 60

Query: 61  FAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSW 120
           FAY GPFGHFLHKLMD IFKGKK   TVAKKVLLEQ+TSSPWN F+FMMYYGLVVEGR W
Sbjct: 61  FAYAGPFGHFLHKLMDRIFKGKKGNTTVAKKVLLEQVTSSPWNXFIFMMYYGLVVEGRPW 120

Query: 121 SLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSV 180
           SLVK KVRKDYP++QLTAWRFWPIVGWVNYQY+P+QFRV+FHSFVASCW IFLNLKARSV
Sbjct: 121 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPIQFRVIFHSFVASCWGIFLNLKARSV 180

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727218|ref|NP_001237665.1| uncharacterized protein LOC100527292 [Glycine max] gi|255632021|gb|ACU16363.1| unknown [Glycine max]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 145/183 (79%), Positives = 160/183 (87%)

Query: 1   MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYG 60
           MSD     ++KYL QLQ+HPLRTKAITA  LAG SDA+AQK+SG K+LQL R+LL M YG
Sbjct: 1   MSDEVNSVFKKYLNQLQLHPLRTKAITAAFLAGFSDAVAQKLSGAKELQLRRVLLFMLYG 60

Query: 61  FAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSW 120
           FAY GPFGHFLHKLMD IFKG+K   TVAKKV+LEQ+TSSPWNNFLFMMYYGLV+EGR W
Sbjct: 61  FAYSGPFGHFLHKLMDKIFKGEKGNDTVAKKVILEQITSSPWNNFLFMMYYGLVIEGRPW 120

Query: 121 SLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSV 180
           S V NKV+KDYPSVQLTAW+FWPIVGWVNYQY+PLQ RVVFHS VA+CWAIFLNLKARSV
Sbjct: 121 STVINKVKKDYPSVQLTAWKFWPIVGWVNYQYMPLQLRVVFHSSVAACWAIFLNLKARSV 180

Query: 181 AIK 183
           AIK
Sbjct: 181 AIK 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195611428|gb|ACG27544.1| peroxisomal membrane protein PMP22 [Zea mays] gi|413921704|gb|AFW61636.1| peroxisomal membrane protein PMP22 [Zea mays]

 Score =  295 bits (756), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 139/185 (75%), Positives = 159/185 (85%), Gaps = 1/185 (0%)

Query: 1   MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYG 60
           MS+V   A + Y+ QLQ HPLRTKAIT+G+LAGCSDA+AQKISGV KLQL RLLL+  YG
Sbjct: 1   MSEVVAMAGQAYMKQLQAHPLRTKAITSGVLAGCSDAVAQKISGVSKLQLRRLLLIALYG 60

Query: 61  FAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSW 120
           FAY GPFGHFLHKLMD  FKGKK K+T AKKVL+EQLT+SPWNN +FMMY+GLVVEGR +
Sbjct: 61  FAYAGPFGHFLHKLMDRFFKGKKGKETTAKKVLVEQLTASPWNNMMFMMYFGLVVEGRPF 120

Query: 121 SLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLK-ARS 179
             VKNKV+KDY SVQLTAWRFWPIV W+NY+Y+PLQ RV+FHSFVASCWA+FLNLK ARS
Sbjct: 121 GQVKNKVKKDYASVQLTAWRFWPIVSWINYEYMPLQLRVLFHSFVASCWAVFLNLKAARS 180

Query: 180 VAIKK 184
           +A  K
Sbjct: 181 IANTK 185

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115477897|ref|NP_001062544.1| Os08g0566900 [Oryza sativa Japonica Group] gi|42409095|dbj|BAD10346.1| putative peroxisomal membrane protein(22-kDa)(PMP22) [Oryza sativa Japonica Group] gi|113624513|dbj|BAF24458.1| Os08g0566900 [Oryza sativa Japonica Group] gi|215704770|dbj|BAG94798.1| unnamed protein product [Oryza sativa Japonica Group] gi|218201627|gb|EEC84054.1| hypothetical protein OsI_30329 [Oryza sativa Indica Group] gi|222641033|gb|EEE69165.1| hypothetical protein OsJ_28327 [Oryza sativa Japonica Group]

 Score =  295 bits (755), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 139/185 (75%), Positives = 159/185 (85%), Gaps = 1/185 (0%)

Query: 1   MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYG 60
           MSDV   A + Y+ QLQ HPLRTKAIT+G+LAGCSDAIAQKISGV  LQ  RLLL+M YG
Sbjct: 1   MSDVVAMAGQAYMRQLQAHPLRTKAITSGVLAGCSDAIAQKISGVPNLQRRRLLLIMLYG 60

Query: 61  FAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSW 120
           FAY GPFGHFLHKLMD  FKGKK K+T AKKVL+EQLT+SPWNN +FMMYYGLVVEGR +
Sbjct: 61  FAYAGPFGHFLHKLMDRFFKGKKGKETTAKKVLVEQLTASPWNNMMFMMYYGLVVEGRPF 120

Query: 121 SLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLK-ARS 179
           S VK+K++KDY SVQLTAW+FWPIV W+NY+Y+PLQ RV+FHSFVASCWA+FLNLK ARS
Sbjct: 121 SQVKSKLKKDYASVQLTAWKFWPIVSWINYEYMPLQLRVLFHSFVASCWAVFLNLKAARS 180

Query: 180 VAIKK 184
           +A  K
Sbjct: 181 IATSK 185

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498670|gb|AFK37401.1| unknown [Lotus japonicus]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 142/184 (77%), Positives = 164/184 (89%)

Query: 1   MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYG 60
           MSD+  +A +KYL QLQ+HPLRTKA TA  LAG SDA+AQK++G KKLQL RLLL + YG
Sbjct: 1   MSDIVNDALKKYLRQLQLHPLRTKAFTAAFLAGFSDAVAQKMAGAKKLQLRRLLLFVLYG 60

Query: 61  FAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTSSPWNNFLFMMYYGLVVEGRSW 120
           FAY GPFGHFLHKLMD IFKGK   +TVAKKV+LEQ+TSSPWNNFLFMMYYGLV+EGR W
Sbjct: 61  FAYSGPFGHFLHKLMDKIFKGKTGNETVAKKVILEQITSSPWNNFLFMMYYGLVIEGRPW 120

Query: 121 SLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSV 180
           S+V NKV+KDYPSVQLTAW+FWP+VGWVNYQY+P+QFRV+FHSFVA+CW IFLNL+AR+V
Sbjct: 121 SMVINKVKKDYPSVQLTAWKFWPVVGWVNYQYMPMQFRVIFHSFVAACWGIFLNLRARTV 180

Query: 181 AIKK 184
           AIKK
Sbjct: 181 AIKK 184

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:1009023385	185	AT4G14305 "AT4G14305" [Arabido	0.989	0.989	0.759	7.3e-75
TAIR|locus:2137124	190	PMP22 [Arabidopsis thaliana (t	0.956	0.931	0.497	2e-47
UNIPROTKB|G3V9N2	194	Pxmp2 "Peroxisomal membrane pr	0.913	0.871	0.283	4.1e-17
RGD|61812	194	Pxmp2 "peroxisomal membrane pr	0.913	0.871	0.283	5.3e-17
MGI|MGI:107487	194	Pxmp2 "peroxisomal membrane pr	0.913	0.871	0.277	6.7e-17
DICTYBASE|DDB_G0290223	184	DDB_G0290223 "pmp22 family pro	0.908	0.913	0.254	1.4e-16
UNIPROTKB|Q2KIY1	196	PXMP2 "Peroxisomal membrane pr	0.918	0.867	0.292	3.7e-16
ZFIN|ZDB-GENE-040912-184	194	zgc:92599 "zgc:92599" [Danio r	0.875	0.835	0.282	6e-16
DICTYBASE|DDB_G0290631	185	DDB_G0290631 "pmp22 family pro	0.897	0.897	0.313	7.7e-16
UNIPROTKB|Q9NR77	195	PXMP2 "Peroxisomal membrane pr	0.891	0.846	0.285	3.3e-15

TAIR|locus:1009023385 AT4G14305 "AT4G14305" [Arabidopsis thaliana (taxid:3702)]

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 139/183 (75%), Positives = 151/183 (82%)

Query:     1 MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXXMFYG 60
             MSD+AK+AWRKYLIQLQ HPLRTKAITAG+LAGCSDAIAQKISGVK+         M YG
Sbjct:     1 MSDLAKDAWRKYLIQLQAHPLRTKAITAGVLAGCSDAIAQKISGVKRIQFRRLLLLMLYG 60

Query:    61 FAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSW 120
             FAYGGPFGHF HKLMD IF            VLLEQLTSSPWNNFLFM YYGLVVEGR W
Sbjct:    61 FAYGGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVEGRPW 120

Query:   121 SLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSV 180
              LVK+K+ KDYP++QLTAW+FWPIVGWVNYQY+PLQFRV+F SFVASCW+IFLNLKARS 
Sbjct:   121 KLVKHKLGKDYPTIQLTAWKFWPIVGWVNYQYVPLQFRVLFSSFVASCWSIFLNLKARSP 180

Query:   181 AIK 183
              IK
Sbjct:   181 VIK 183

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2137124 PMP22 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 88/177 (49%), Positives = 121/177 (68%)

Query:     6 KEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXXMFYGFAYGG 65
             K   ++YL QLQ HPLRTKAITAG+L+G SD ++QK+SG++K         + +   + G
Sbjct:     8 KTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLG 67

Query:    66 PFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKN 125
             P GHF H  +D  F            V+LEQLT SP N+ LFM+YYG+V+E   W+LV+ 
Sbjct:    68 PAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRE 127

Query:   126 KVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSVAI 182
             +++K YP+VQLTAW F+P+VGW+NY+Y+PL FRV+ HS VA  W IFL L+ARS+ +
Sbjct:   128 RIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRARSMTL 184

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IDA

UNIPROTKB|G3V9N2 Pxmp2 "Peroxisomal membrane protein 2, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 51/180 (28%), Positives = 95/180 (52%)

Query:     1 MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXX---- 56
             +  + K A  +YL+ L+ +P+ TKA+++GIL+   + +AQ I   +K             
Sbjct:    14 LGSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLR 73

Query:    57 -MFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGL-V 114
              + YG    GP  H+L+  M+  +            +LL++L  +P   FL + ++ + +
Sbjct:    74 YLVYGLFVTGPLSHYLYLFMEY-WVPPEVPWARVKRLLLDRLFFAP--TFLLLFFFVMNL 130

Query:   115 VEGRSWSLVKNKVRKDY-PSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 173
             +EG++ S+   K+R  + P++Q+  WR W  + ++N  Y+PLQFRV+F +  A  W  +L
Sbjct:   131 LEGKNISVFVAKMRSGFWPALQMN-WRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

GO:0005739 "mitochondrion" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

RGD|61812 Pxmp2 "peroxisomal membrane protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 51/180 (28%), Positives = 95/180 (52%)

Query:     1 MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXX---- 56
             +  + K A  +YL+ L+ +P+ TKA+++GIL+   + +AQ I   +K             
Sbjct:    14 LRSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLR 73

Query:    57 -MFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGL-V 114
              + YG    GP  H+L+  M+  +            +LL++L  +P   FL + ++ + +
Sbjct:    74 YLVYGLFVTGPLSHYLYLFMEY-WVPPEVPWARVKRLLLDRLFFAP--TFLLLFFFVMNL 130

Query:   115 VEGRSWSLVKNKVRKDY-PSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 173
             +EG++ S+   K+R  + P++Q+  WR W  + ++N  Y+PLQFRV+F +  A  W  +L
Sbjct:   131 LEGKNISVFVAKMRSGFWPALQMN-WRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005777 "peroxisome" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=ISO;IDA

GO:0005779 "integral to peroxisomal membrane" evidence=TAS

GO:0043234 "protein complex" evidence=ISO

MGI|MGI:107487 Pxmp2 "peroxisomal membrane protein 2" [Mus musculus (taxid:10090)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 50/180 (27%), Positives = 95/180 (52%)

Query:     1 MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXX---- 56
             +  + K A  +YL+ L+++P+ TKA+++GIL+   + +AQ I   ++             
Sbjct:    14 LGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLR 73

Query:    57 -MFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGL-V 114
              + YG    GP  H+L+  M+               +LL++L  +P   FL + ++ + +
Sbjct:    74 YLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASVKR-LLLDRLFFAP--TFLLLFFFVMNL 130

Query:   115 VEGRSWSLVKNKVRKDY-PSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 173
             +EG++ S+   K+R  + P++Q+  WR W  + ++N  Y+PLQFRV+F +  A  W  +L
Sbjct:   131 LEGKNVSVFVAKMRSGFWPALQMN-WRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

DICTYBASE|DDB_G0290223 DDB_G0290223 "pmp22 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 44/173 (25%), Positives = 87/173 (50%)

Query:     5 AKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXXMFYGFAYG 64
             A   W  Y+ +L+  P++TKA+T+  L+  S  +AQK    KK           +G    
Sbjct:    12 AVTTW--YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGLI-S 68

Query:    65 GPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVK 124
              P  H+ H ++D +F            ++++QL  +P+ N  F      +++G+  S++ 
Sbjct:    69 SPLVHYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLA-ILDGKPKSILF 127

Query:   125 NKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKA 177
                   +P+++  +W+ WP+   +N++++P   RV+F + V  CW I+L++ A
Sbjct:   128 KLYFDLFPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILA 179

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q2KIY1 PXMP2 "Peroxisomal membrane protein 2" [Bos taurus (taxid:9913)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 53/181 (29%), Positives = 92/181 (50%)

Query:     1 MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXXM--- 57
             +  + + A  +YL  L+++P+ TKA T+GIL+   + +AQ I   +K         +   
Sbjct:    14 LGPLPRRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGP 73

Query:    58 ----FYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGL 113
                  YGF + GP GHF + LM+  +            +LL++L  +P    LF +    
Sbjct:    74 LRYAIYGFFFTGPLGHFFYLLMER-WIPSEVPLAGIKRLLLDRLLFAPAFLSLFFLVMNF 132

Query:   114 VVEGRSWSLVKNKVRKDY-PSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIF 172
             + EG+  +    K++  + P++++  WR W  V ++N  YIP+QFRV+F + VA  W  +
Sbjct:   133 L-EGQDTAAFAAKMKSGFWPALRMN-WRVWTPVQFININYIPVQFRVLFANLVALFWYAY 190

Query:   173 L 173
             L
Sbjct:   191 L 191

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040912-184 zgc:92599 "zgc:92599" [Danio rerio (taxid:7955)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 50/177 (28%), Positives = 93/177 (52%)

Query:     8 AWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKI---------SGVKKXXXXXXXXXMF 58
             A ++YL  L+ +P+ TK++T+GIL+   + ++Q +         S  KK           
Sbjct:    17 ALQQYLSLLKKYPIITKSVTSGILSALGNLLSQVLEYQKNVKENSPKKKISILGPVHFAI 76

Query:    59 YGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGL-VVEG 117
             YG    GP  H+ + L++++             +LLE+L  +P   FL + Y  +  +EG
Sbjct:    77 YGLFITGPVSHYFYHLLEVLLPTTVPYCLIKR-LLLERLIFAP--AFLLLFYVVMNALEG 133

Query:   118 RSWSLVKNKVRKDY-PSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 173
             ++ + V+NK++  Y P++++  W+ W    ++N  Y+P+QFRV+F + VA  W  +L
Sbjct:   134 KTLADVQNKLKTSYWPAMKMN-WKVWTPFQFININYVPVQFRVLFANMVALFWYAYL 189

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0290631 DDB_G0290631 "pmp22 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 54/172 (31%), Positives = 81/172 (47%)

Query:     6 KEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKIS----GVKKXXXXXXXXXMFYGF 61
             K A   YL QL  +P+ TKA+T+G L   SD++ Q I       KK           +GF
Sbjct:     9 KLAQSHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGF 68

Query:    62 AYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWS 121
             A  GP  H+  K +D  F            + ++Q+  SP  NFLF    G ++EG+S  
Sbjct:    69 AVTGPLFHYWFKYLDKHFPKKSYRHAFIK-LTIDQVVCSPVFNFLFFSGMG-ILEGKSKD 126

Query:   122 LVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 173
              +  K++KD+ +  ++    WP + +VN+ YI    RV F +     W  FL
Sbjct:   127 DIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFL 178

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q9NR77 PXMP2 "Peroxisomal membrane protein 2" [Homo sapiens (taxid:9606)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 50/175 (28%), Positives = 87/175 (49%)

Query:     6 KEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXX------MFY 59
             + A  +YL+ L+++P+ TKA T+GIL+   + +AQ I   +K                 Y
Sbjct:    19 RRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQMIEKKRKKENSRSLDVGGPLRYAVY 78

Query:    60 GFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRS 119
             GF + GP  HF +  M+  +            +LL++L  +P    LF +    + EG+ 
Sbjct:    79 GFFFTGPLSHFFYFFMEH-WIPPEVPLAGLRRLLLDRLVFAPAFLMLFFLIMNFL-EGKD 136

Query:   120 WSLVKNKVRKDY-PSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 173
              S    K+R  + P++++  WR W  + ++N  Y+PL+FRV+F +  A  W  +L
Sbjct:   137 ASAFAAKMRGGFWPALRMN-WRVWTPLQFININYVPLKFRVLFANLAALFWYAYL 190

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0043234 "protein complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q07066	PXMP2_RAT	No assigned EC number	0.3111	0.9135	0.8711	yes	no
Q2KIY1	PXMP2_BOVIN	No assigned EC number	0.3093	0.9189	0.8673	yes	no
Q54FR4	PX24D_DICDI	No assigned EC number	0.3372	0.8972	0.8972	yes	no
P39210	MPV17_HUMAN	No assigned EC number	0.3028	0.9189	0.9659	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020308001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (185 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
pfam04117	68	pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family	2e-17

>gnl|CDD|202894 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family

 Score = 72.6 bits (179), Expect = 2e-17
 Identities = 17/66 (25%), Positives = 37/66 (56%)

Query: 114 VVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 173
           ++EG+S   +K K+++ +       W+ WP V ++N+ ++P+ +RV+F + V   W  +L
Sbjct: 3   LLEGKSLEEIKEKLKEKFWPTLKANWKVWPPVQFINFAFVPVHYRVLFVNLVGIGWNTYL 62

Query: 174 NLKARS 179
           +     
Sbjct: 63  SYVNNK 68

The 22-kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information. Mpv17 is a closely related peroxisomal protein. In mouse, the Mpv17 protein is involved in the development of early-onset glomerulosclerosis. More recently a homolog of Mpv17 in S. cerevisiae has been been found to be an integral membrane protein of the inner mitochondrial membrane where it has been proposed to have a role in ethanol metabolism and tolerance during heat-shock. Defects in MPV17 is associated with mitochondrial DNA depletion syndrome (MDDS) and Navajo neurohepatopathy (NNH). MDDS is a clinically heterogeneous group of disorders characterized by a reduction in mitochondrial DNA (mtDNA) copy number. Primary mtDNA depletion is inherited as an autosomal recessive trait and may affect single organs, typically muscle or liver, or multiple tissues. Individuals with the hepatocerebral form of mitochondrial DNA depletion syndrome have early progressive liver failure and neurologic abnormalities, hypoglycemia, and increased lactate in body fluids. NNH is an autosomal recessive disease that is prevalent among Navajo children in the South Western states of America. The major clinical features are hepatopathy, peripheral neuropathy, corneal anesthesia and scarring, acral mutilation, cerebral leukoencephalopathy, failure to thrive, and recurrent metabolic acidosis with intercurrent infections. Infantile, childhood, and classic forms of NNH have been described. Mitochondrial DNA depletion was detected in the livers of patients, suggesting a primary defect in mtDNA maintenance. Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
KOG1944	222	consensus Peroxisomal membrane protein MPV17 and r	100.0
PF04117	68	Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR0	99.92

>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]

Probab=100.00  E-value=7.4e-42  Score=274.85  Aligned_cols=166  Identities=34%  Similarity=0.645  Sum_probs=157.4

Q ss_pred             HhhCchHHHHHHHHHHH-HHHHHHHHhhhcC-----CcchHHHHHHHHHHHhhhccchhhhHHHHHHhHccCCCchHHHH
Q 029947           16 LQVHPLRTKAITAGILA-GCSDAIAQKISGV-----KKLQLTRLLLLMFYGFAYGGPFGHFLHKLMDIIFKGKKDKKTVA   89 (185)
Q Consensus        16 l~~~Pl~t~~~t~~~l~-~~gD~~aQ~~~~~-----~~~D~~R~~~~~~~G~~~~gp~~~~wy~~L~~~~~~~~~~~~~~   89 (185)
                      ...+|+++++++++.+. ..||.++|.++.+     +.+|+.|++||+++|+++.||.+|+||+.||+.+|. ++..+++
T Consensus        46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~p~-~~~~~~~  124 (222)
T KOG1944|consen   46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLFPK-KTLITVV  124 (222)
T ss_pred             hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhheeccchhHHHHHHHHHccC-ccHHHHH
Confidence            46789888999888888 9999999999742     568999999999999889999999999999999998 7999999


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHhcCCChHhHHHHHHhhCHHHHHhCcccchHHHhHhhhcccCCchhhHHHHHHHHH
Q 029947           90 KKVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCW  169 (185)
Q Consensus        90 ~Kv~~Dq~v~~P~~~~~f~~~~~~~l~g~s~~~~~~~~~~~~~~~~~~~~~~Wp~~~~inF~~vP~~~Rv~~~~~v~~~W  169 (185)
                      +|++.||++++|+.+.+|+.+++ ++||++.++.+++++++++|++++||++||++|++||++||+++|+++.|+++++|
T Consensus       125 ~kvl~dql~~~P~~~~~ff~~~~-~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~VP~~~rvl~~~~vsl~W  203 (222)
T KOG1944|consen  125 KKVLLDQLVFAPLFIVVFFLLMG-LLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRLVPLQYRVLFVNIVSLVW  203 (222)
T ss_pred             HHHHHhhhhhchHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEEccccceehhhhhHHHHH
Confidence            99999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcchhhh
Q 029947          170 AIFLNLKARSVAIK  183 (185)
Q Consensus       170 ~~yLS~~~~~~~~~  183 (185)
                      ++|||+++++.+++
T Consensus       204 ~~~Ls~~~~~~~~~  217 (222)
T KOG1944|consen  204 NTYLSYKNASLVEL  217 (222)
T ss_pred             HHHHHHHhhccccc
Confidence            99999999998443

>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes

Probab=99.92  E-value=5.6e-26  Score=150.86  Aligned_cols=68  Identities=35%  Similarity=0.869  Sum_probs=66.1

Q ss_pred             HHHHhcCCChHhHHHHHHhhCHHHHHhCcccchHHHhHhhhcccCCchhhHHHHHHHHHHHHHHhhhcc
Q 029947          111 YGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARS  179 (185)
Q Consensus       111 ~~~~l~g~s~~~~~~~~~~~~~~~~~~~~~~Wp~~~~inF~~vP~~~Rv~~~~~v~~~W~~yLS~~~~~  179 (185)
                      |+ ++||+|++++++++|++++++++++|++|||+|++||.+||+++|++|+|+++++||+|||+++||
T Consensus         1 Mg-~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r   68 (68)
T PF04117_consen    1 MG-LLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR   68 (68)
T ss_pred             CC-cccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence            46 899999999999999999999999999999999999999999999999999999999999999986

PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00