Citrus Sinensis ID: 029953

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
MAANTFSFPANLLRYSQSFDAKRSSAPSFLPSSSMFGNKLLIRPQLNSSRFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGSLCI
cccccccccccHHcccccccccccccccccccccccHHHHHcccccccccHHHHHccccHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccc
ccccEEEcccccccccccccccccccccccccccccccEEEEcccccccccccccccccEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHccccccEEccccccccHHHHHHHHHHHHHHHHcccccc
maantfsfpanLLRYSQSfdakrssapsflpsssmfgnkllirpqlnssrfvtkyhrssatatvsfslpttvkpetaspdkipkWSARAIRSFAMAELEARklkypntgtEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLlgksdlfffsperppltEQAQRALDWAFNEklksgslci
maantfsfpaNLLRYSQSFDAKRSSAPSFLPSSSMFGNKLLIRPQLNSSRFVTKYHrssatatvsfslpttvkpetaspdkipkwSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGSLCI
MAANTFSFPANLLRYSQSFDAKRssapsflpsssMFGNKLLIRPQLNSSRFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGSLCI
***************************************LLIR******RFVTKY*****************************WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFS*************LDWAF***********
*********ANLLR***********************************************************************SARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLL*************PLTEQAQRALDWAFNEKLKSG****
MAANTFSFPANLLRYSQSFDAKRSSAPSFLPSSSMFGNKLLIRPQLNSSRFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEK********
****TFSFPANLLRY**********APSFLPSSSMFGNKLLIRPQLNSSRFVTKYHRSSATATVSFSLPTT********DKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKS*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAANTFSFPANLLRYSQSFDAKRSSAPSFLPSSSMFGNKLLIRPQLNSSRFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGSLCI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query185 2.2.26 [Sep-21-2011]
Q8GW78241 Clp protease-related prot no no 0.675 0.518 0.646 2e-41
Q9TM05 854 ATP-dependent Clp proteas N/A no 0.491 0.106 0.354 6e-08
P31541 926 ATP-dependent Clp proteas N/A no 0.518 0.103 0.326 8e-08
O78410 819 ATP-dependent Clp proteas yes no 0.518 0.117 0.316 8e-08
P46523 874 ATP-dependent Clp proteas N/A no 0.518 0.109 0.326 9e-08
Q2QVG9 919 Chaperone protein ClpC2, no no 0.518 0.104 0.326 9e-08
Q7F9I1 918 Chaperone protein ClpC1, no no 0.518 0.104 0.326 9e-08
Q9FI56 929 Chaperone protein ClpC1, no no 0.518 0.103 0.326 1e-07
P31542 923 ATP-dependent Clp proteas N/A no 0.518 0.104 0.326 1e-07
Q9SXJ7 952 Chaperone protein ClpC2, no no 0.762 0.148 0.299 2e-07
>sp|Q8GW78|CLP41_ARATH Clp protease-related protein At4g12060, chloroplastic OS=Arabidopsis thaliana GN=At4g12060 PE=1 SV=1 Back     alignment and function desciption
 Score =  168 bits (426), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/130 (64%), Positives = 100/130 (76%), Gaps = 5/130 (3%)

Query: 54  KYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAF 113
           + H+S+ +     SLPT       S  K PKWS RAI+SFAM ELEARKLKYPNTGTEA 
Sbjct: 68  RIHKSAIS-----SLPTANPDLVVSDAKKPKWSWRAIKSFAMGELEARKLKYPNTGTEAL 122

Query: 114 LMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWA 173
           LMGIL+EGTS T+KFLRAN I L+KVREET+ LLGK+D++FFSPE PPLTE AQRALD A
Sbjct: 123 LMGILIEGTSFTSKFLRANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSA 182

Query: 174 FNEKLKSGSL 183
            ++ LK+G +
Sbjct: 183 LDQNLKAGGI 192

Arabidopsis thaliana (taxid: 3702)
>sp|Q9TM05|CLPC_CYACA ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1 Back     alignment and function description
>sp|P31541|CLPAA_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1 Back     alignment and function description
>sp|O78410|CLPC_GUITH ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1 Back     alignment and function description
>sp|P46523|CLPA_BRANA ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1 Back     alignment and function description
>sp|Q2QVG9|CLPC2_ORYSJ Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPC2 PE=2 SV=2 Back     alignment and function description
>sp|Q7F9I1|CLPC1_ORYSJ Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPC1 PE=2 SV=2 Back     alignment and function description
>sp|Q9FI56|CLPC1_ARATH Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana GN=CLPC1 PE=1 SV=1 Back     alignment and function description
>sp|P31542|CLPAB_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1 Back     alignment and function description
>sp|Q9SXJ7|CLPC2_ARATH Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana GN=CLPC2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query185
255539683227 ATP-dependent clp protease, putative [Ri 0.951 0.775 0.670 4e-54
147837826231 hypothetical protein VITISV_006813 [Viti 0.789 0.632 0.738 8e-54
359490173231 PREDICTED: clp protease-related protein 0.789 0.632 0.738 9e-54
449460786234 PREDICTED: clp protease-related protein 0.951 0.752 0.642 2e-53
356530947252 PREDICTED: clp protease-related protein 0.816 0.599 0.690 8e-52
363808208260 uncharacterized protein LOC100786582 [Gl 0.816 0.580 0.690 1e-51
356530949181 PREDICTED: clp protease-related protein 0.810 0.828 0.695 3e-51
359806749252 uncharacterized protein LOC100786069 [Gl 0.816 0.599 0.677 4e-51
18416540238 Double Clp-N motif protein [Arabidopsis 0.956 0.743 0.581 1e-46
5123926234 putative protein [Arabidopsis thaliana] 0.956 0.756 0.581 1e-46
>gi|255539683|ref|XP_002510906.1| ATP-dependent clp protease, putative [Ricinus communis] gi|223550021|gb|EEF51508.1| ATP-dependent clp protease, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 122/182 (67%), Positives = 135/182 (74%), Gaps = 6/182 (3%)

Query: 1   MAANTFSFPANLLRYSQSFDAKRSSAPSFLPSSSMFGNKLLIRPQLNSSRFVTKYHRSSA 60
           MA  TFSF +  L  S+ +  K   +   LP SS  GNKLLI+ Q N S FV K H S+A
Sbjct: 1   MATQTFSFLSISLPTSKIYVEKPHHSSLLLPLSSFHGNKLLIK-QSNFSNFVLKSHGSTA 59

Query: 61  TATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120
            ATV  SLPT   P      KIPKWSARAIRSF + ELEARKLKYPNTGTEA LMGIL+E
Sbjct: 60  -ATVLSSLPTKRHPS----GKIPKWSARAIRSFGLGELEARKLKYPNTGTEALLMGILIE 114

Query: 121 GTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKS 180
           GTS  AKFLRANGIT F+VREET+NLLGKSDL++FSPE PPLTEQAQRALDWA +EKLKS
Sbjct: 115 GTSPAAKFLRANGITFFEVREETVNLLGKSDLYYFSPEHPPLTEQAQRALDWAIDEKLKS 174

Query: 181 GS 182
           G 
Sbjct: 175 GD 176

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147837826|emb|CAN60931.1| hypothetical protein VITISV_006813 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359490173|ref|XP_002268037.2| PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Vitis vinifera] gi|296084123|emb|CBI24511.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449460786|ref|XP_004148125.1| PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Cucumis sativus] gi|449499662|ref|XP_004160878.1| PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356530947|ref|XP_003534040.1| PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|363808208|ref|NP_001242487.1| uncharacterized protein LOC100786582 [Glycine max] gi|255639105|gb|ACU19852.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356530949|ref|XP_003534041.1| PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|359806749|ref|NP_001241043.1| uncharacterized protein LOC100786069 [Glycine max] gi|255641314|gb|ACU20934.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|18416540|ref|NP_567718.1| Double Clp-N motif protein [Arabidopsis thaliana] gi|14334924|gb|AAK59640.1| unknown protein [Arabidopsis thaliana] gi|16323364|gb|AAL15176.1| unknown protein [Arabidopsis thaliana] gi|21555497|gb|AAM63872.1| unknown [Arabidopsis thaliana] gi|195604812|gb|ACG24236.1| ATP-dependent Clp protease ATP-binding subunit clpA [Zea mays] gi|332659648|gb|AEE85048.1| Double Clp-N motif protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5123926|emb|CAB45514.1| putative protein [Arabidopsis thaliana] gi|7269388|emb|CAB81348.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query185
TAIR|locus:2138048238 AT4G25370 "AT4G25370" [Arabido 0.956 0.743 0.554 1.7e-43
TAIR|locus:2118066241 AT4G12060 "AT4G12060" [Arabido 0.632 0.485 0.700 2.6e-38
UNIPROTKB|Q3A9N1 811 CHY_2348 "Negative regulator o 0.518 0.118 0.387 5.9e-09
TIGR_CMR|CHY_2348 811 CHY_2348 "negative regulator o 0.518 0.118 0.387 5.9e-09
TAIR|locus:2157383 929 CLPC1 "CLPC homologue 1" [Arab 0.518 0.103 0.336 1e-07
TAIR|locus:2099433 952 HSP93-III [Arabidopsis thalian 0.664 0.129 0.310 2.9e-07
UNIPROTKB|P0A522 848 clpC "Probable ATP-dependent C 0.513 0.112 0.323 1.4e-05
TAIR|locus:2085592 341 AT3G45450 [Arabidopsis thalian 0.378 0.205 0.357 6.5e-05
UNIPROTKB|Q724I0 820 LMOf2365_0244 "ClpC ATPase" [L 0.513 0.115 0.295 0.00017
UNIPROTKB|Q81VV9 811 BAS0081 "Negative regulator of 0.362 0.082 0.358 0.00058
TAIR|locus:2138048 AT4G25370 "AT4G25370" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 102/184 (55%), Positives = 125/184 (67%)

Query:     1 MAANTFSFPANLLRYSQSFDAKRXXXXXXXX----XXXMFGNKLLIRPQLNSSRFVTKYH 56
             MA+ T SF    L   + F +++               + G KLL   Q +   FV K  
Sbjct:     1 MASYTVSFIPLTLSNPRIFVSRQNGSPSSSSRIPLTSSLLGKKLLAT-QPSHRCFVPKLR 59

Query:    57 RSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMG 116
               ++ +TV  ++P   +PE  S DKIPKWSARAI+S AM ELEARKLKYP+TGTEA LMG
Sbjct:    60 CLTSASTV-LNVPIA-QPENGSSDKIPKWSARAIKSLAMGELEARKLKYPSTGTEAILMG 117

Query:   117 ILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNE 176
             ILVEGTST AKFLR NG+TLFKVR+ETL+LLGKSD++FFSPE PPLTE AQ+A+ WA +E
Sbjct:   118 ILVEGTSTVAKFLRGNGVTLFKVRDETLSLLGKSDMYFFSPEHPPLTEPAQKAIAWAIDE 177

Query:   177 KLKS 180
             K KS
Sbjct:   178 KNKS 181
GO:0005524 "ATP binding" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0019538 "protein metabolic process" evidence=IEA
GO:0009579 "thylakoid" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009532 "plastid stroma" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
TAIR|locus:2118066 AT4G12060 "AT4G12060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3A9N1 CHY_2348 "Negative regulator of genetic competence clpC/mecB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2348 CHY_2348 "negative regulator of genetic competence clpC/mecB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TAIR|locus:2157383 CLPC1 "CLPC homologue 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099433 HSP93-III [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P0A522 clpC "Probable ATP-dependent Clp protease ATP-binding subunit" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TAIR|locus:2085592 AT3G45450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q724I0 LMOf2365_0244 "ClpC ATPase" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|Q81VV9 BAS0081 "Negative regulator of genetic competence ClpC/MecB" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00038482001
SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (231 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
CHL00095 821 CHL00095, clpC, Clp protease ATP binding subunit 7e-09
pfam0286153 pfam02861, Clp_N, Clp amino terminal domain 4e-08
CHL00095 821 CHL00095, clpC, Clp protease ATP binding subunit 5e-04
COG0542 786 COG0542, clpA, ATP-binding subunits of Clp proteas 5e-04
COG0542 786 COG0542, clpA, ATP-binding subunits of Clp proteas 0.001
>gnl|CDD|214361 CHL00095, clpC, Clp protease ATP binding subunit Back     alignment and domain information 
 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 84  KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
           +++ +AI+   +++ EAR+L +   GTE  L+G++ EGT   A+ L++ G+TL   R E 
Sbjct: 4   RFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEV 63

Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNE 176
             ++G+   F       P T +A+R L+ +  E
Sbjct: 64  EKIIGRGTGFVAV--EIPFTPRAKRVLEMSLEE 94

Length = 821
>gnl|CDD|217254 pfam02861, Clp_N, Clp amino terminal domain Back     alignment and domain information
>gnl|CDD|214361 CHL00095, clpC, Clp protease ATP binding subunit Back     alignment and domain information
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 185
CHL00095 821 clpC Clp protease ATP binding subunit 99.46
TIGR03346 852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 99.43
TIGR02639 731 ClpA ATP-dependent Clp protease ATP-binding subuni 99.33
PRK10865 857 protein disaggregation chaperone; Provisional 99.31
PF0286153 Clp_N: Clp amino terminal domain; InterPro: IPR004 99.29
TIGR03345 852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 99.28
COG0542 786 clpA ATP-binding subunits of Clp protease and DnaK 99.15
PRK11034 758 clpA ATP-dependent Clp protease ATP-binding subuni 99.0
KOG1051 898 consensus Chaperone HSP104 and related ATP-depende 98.8
CHL00095 821 clpC Clp protease ATP binding subunit 98.11
TIGR02639 731 ClpA ATP-dependent Clp protease ATP-binding subuni 97.98
TIGR03346 852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 97.75
COG0542 786 clpA ATP-binding subunits of Clp protease and DnaK 97.38
TIGR03345 852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 97.13
PRK11034 758 clpA ATP-dependent Clp protease ATP-binding subuni 97.13
PRK10865 857 protein disaggregation chaperone; Provisional 96.91
KOG1051 898 consensus Chaperone HSP104 and related ATP-depende 94.88
cd00074115 H2A Histone 2A; H2A is a subunit of the nucleosome 88.8
PTZ00017134 histone H2A; Provisional 87.47
PLN00154136 histone H2A; Provisional 86.74
KOG1756131 consensus Histone 2A [Chromatin structure and dyna 86.2
PLN00157132 histone H2A; Provisional 85.86
PLN00153129 histone H2A; Provisional 85.7
smart00414106 H2A Histone 2A. 84.96
PLN00156139 histone H2AX; Provisional 83.96
PTZ00252134 histone H2A; Provisional 80.1
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information 
Probab=99.46  E-value=5.9e-13  Score=128.71  Aligned_cols=103  Identities=30%  Similarity=0.485  Sum_probs=93.7

Q ss_pred             CchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 029953           81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP  160 (185)
Q Consensus        81 m~~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~~~~~~i  160 (185)
                      |+.+||++++++|..|+++|++++|.+|++||||+||+.++++.+.++|+.+|++.+.++..++..++..+..  .+..+
T Consensus         1 m~~rfT~~a~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~~~a~~iL~~~gid~~~l~~~l~~~l~~~~~~--~~~~~   78 (821)
T CHL00095          1 MFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEVEKIIGRGTGF--VAVEI   78 (821)
T ss_pred             ChhhHhHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHHhcCCCC--Ccccc
Confidence            5779999999999999999999999999999999999999888999999999999999999999988765432  12468


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCC
Q 029953          161 PLTEQAQRALDWAFNEKLKSGSLCI  185 (185)
Q Consensus       161 ~~s~~a~~~Le~A~~~A~~lGd~yI  185 (185)
                      ++++.++++|+.|..+|..+|+++|
T Consensus        79 ~~S~~~~~vL~~A~~~A~~~~~~~I  103 (821)
T CHL00095         79 PFTPRAKRVLEMSLEEARDLGHNYI  103 (821)
T ss_pred             ccCHHHHHHHHHHHHHHHHhCCCcc
Confidence            9999999999999999999999886

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome Back     alignment and domain information
>PTZ00017 histone H2A; Provisional Back     alignment and domain information
>PLN00154 histone H2A; Provisional Back     alignment and domain information
>KOG1756 consensus Histone 2A [Chromatin structure and dynamics] Back     alignment and domain information
>PLN00157 histone H2A; Provisional Back     alignment and domain information
>PLN00153 histone H2A; Provisional Back     alignment and domain information
>smart00414 H2A Histone 2A Back     alignment and domain information
>PLN00156 histone H2AX; Provisional Back     alignment and domain information
>PTZ00252 histone H2A; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
3fh2_A146 The Crystal Structure Of The Probable Atp-Dependent 1e-08
3pxg_A 468 Structure Of Meca121 And Clpc1-485 Complex Length = 2e-07
2y1q_A150 Crystal Structure Of Clpc N-Terminal Domain Length 4e-07
2y1r_A149 Structure Of Meca121 & Clpc N-Domain Complex Length 4e-07
2k77_A146 Nmr Solution Structure Of The Bacillus Subtilis Clp 4e-07
3pxi_A 758 Structure Of Meca108:clpc Length = 758 2e-06
>pdb|3FH2|A Chain A, The Crystal Structure Of The Probable Atp-Dependent Protease (Heat Shock Protein) From Corynebacterium Glutamicum Length = 146 Back     alignment and structure 
Iteration: 1

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 84  KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
           +++ RA R   +A+ EAR L +   GTE  L+G++ EG    AK L + GI+L  VR+E 
Sbjct: 6   RFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEV 65
Query: 144 LNLLGKSDLFFFSP--ERPPLTEQAQRALDWAFNEKLKSGS 182
             ++G+       P     P T +A++ L+ +  E L+ G 
Sbjct: 66  EEIIGQGS----QPTTGHIPFTPRAKKVLELSLREGLQMGH 102
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex Length = 468 Back     alignment and structure
>pdb|2Y1Q|A Chain A, Crystal Structure Of Clpc N-Terminal Domain Length = 150 Back     alignment and structure
>pdb|2Y1R|A Chain A, Structure Of Meca121 & Clpc N-Domain Complex Length = 149 Back     alignment and structure
>pdb|2K77|A Chain A, Nmr Solution Structure Of The Bacillus Subtilis Clpc N- Domain Length = 146 Back     alignment and structure
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc Length = 758 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
3fh2_A146 Probable ATP-dependent protease (heat shock prote; 2e-18
3fh2_A146 Probable ATP-dependent protease (heat shock prote; 3e-11
2y1q_A150 CLPC N-domain, negative regulator of genetic compe 6e-15
2y1q_A150 CLPC N-domain, negative regulator of genetic compe 2e-11
3fes_A145 ATP-dependent CLP endopeptidase; alpha-helical bun 6e-15
3fes_A145 ATP-dependent CLP endopeptidase; alpha-helical bun 5e-12
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 1e-13
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 7e-11
3pxg_A 468 Negative regulator of genetic competence CLPC/MEC; 2e-12
3pxg_A 468 Negative regulator of genetic competence CLPC/MEC; 6e-11
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 1e-10
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 5e-07
1k6k_A143 ATP-dependent CLP protease ATP-binding subunit CLP 3e-04
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum} Length = 146 Back     alignment and structure
 Score = 76.6 bits (189), Expect = 2e-18
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 2/99 (2%)

Query: 84  KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
           +++ RA R   +A+ EAR L +   GTE  L+G++ EG    AK L + GI+L  VR+E 
Sbjct: 6   RFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEV 65

Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGS 182
             ++G+      +    P T +A++ L+ +  E L+ G 
Sbjct: 66  EEIIGQGSQ--PTTGHIPFTPRAKKVLELSLREGLQMGH 102
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum} Length = 146 Back     alignment and structure
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A Length = 150 Back     alignment and structure
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A Length = 150 Back     alignment and structure
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile} Length = 145 Back     alignment and structure
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile} Length = 145 Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Length = 758 Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Length = 758 Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Length = 468 Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Length = 468 Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Length = 758 Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Length = 758 Back     alignment and structure
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A* Length = 143 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query185
3fh2_A146 Probable ATP-dependent protease (heat shock prote; 99.85
1khy_A148 CLPB protein; alpha helix, chaperone; 1.95A {Esche 99.83
3fes_A145 ATP-dependent CLP endopeptidase; alpha-helical bun 99.83
3zri_A171 CLPB protein, CLPV; chaperone, HSP100 proteins, AA 99.82
2y1q_A150 CLPC N-domain, negative regulator of genetic compe 99.81
1k6k_A143 ATP-dependent CLP protease ATP-binding subunit CLP 99.73
3pxg_A 468 Negative regulator of genetic competence CLPC/MEC; 99.7
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 99.66
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 99.6
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 99.48
3fh2_A146 Probable ATP-dependent protease (heat shock prote; 99.3
3fes_A145 ATP-dependent CLP endopeptidase; alpha-helical bun 99.24
2y1q_A150 CLPC N-domain, negative regulator of genetic compe 99.17
1khy_A148 CLPB protein; alpha helix, chaperone; 1.95A {Esche 99.1
1k6k_A143 ATP-dependent CLP protease ATP-binding subunit CLP 99.06
3pxg_A 468 Negative regulator of genetic competence CLPC/MEC; 98.78
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 98.67
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 98.4
3zri_A171 CLPB protein, CLPV; chaperone, HSP100 proteins, AA 98.3
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 97.33
2f8n_G120 Core histone macro-H2A.1; nucleosome, NCP, macroh2 84.34
2nqb_C123 Histone H2A; nucleosome, NCP, chromatin, structura 82.99
1f66_C128 Histone H2A.Z; nucleosome, chromatin, histone vari 82.16
1tzy_A129 Histone H2A-IV; histone-fold, tetramer-dimer-dimer 82.11
1id3_C131 Histone H2A.1; nucleosome core particle, chromatin 81.77
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
Probab=99.85  E-value=1.8e-20  Score=144.11  Aligned_cols=103  Identities=32%  Similarity=0.490  Sum_probs=96.8

Q ss_pred             CchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 029953           81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP  160 (185)
Q Consensus        81 m~~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~~~~~~i  160 (185)
                      |+++||++++++|..|+++|++++|++|++||||+||+.++++.+.++|+++|+|.+.+++.++..+++.|..  .+..+
T Consensus         3 m~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~~~~~~--~~~~~   80 (146)
T 3fh2_A            3 MFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQP--TTGHI   80 (146)
T ss_dssp             GGGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHCCCSCC--CCSCC
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhccCCCC--CcCCC
Confidence            6789999999999999999999999999999999999999889999999999999999999999999988753  23568


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCC
Q 029953          161 PLTEQAQRALDWAFNEKLKSGSLCI  185 (185)
Q Consensus       161 ~~s~~a~~~Le~A~~~A~~lGd~yI  185 (185)
                      ++|+.++++|+.|+.+|+++||+||
T Consensus        81 ~~s~~~~~vL~~A~~~a~~~~~~~i  105 (146)
T 3fh2_A           81 PFTPRAKKVLELSLREGLQMGHKYI  105 (146)
T ss_dssp             CBCHHHHHHHHHHHHHHHHTTCSSB
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCCcC
Confidence            9999999999999999999999997
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1 Back     alignment and structure
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile} Back     alignment and structure
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A Back     alignment and structure
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A Back     alignment and structure
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A* Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile} Back     alignment and structure
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A Back     alignment and structure
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1 Back     alignment and structure
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A* Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C Back     alignment and structure
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C* Back     alignment and structure
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1 Back     alignment and structure
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ... Back     alignment and structure
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 185
d1qvra1145 a.174.1.1 (A:4-148) N-terminal domain of ClpB (hea 1e-05
d1k6ka_142 a.174.1.1 (A:) N-terminal, ClpS-binding domain of 1e-04
d1khya_139 a.174.1.1 (A:) N-terminal domain of ClpB (heat sho 2e-04
>d1qvra1 a.174.1.1 (A:4-148) N-terminal domain of ClpB (heat shock protein F84.1) {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure

class: All alpha proteins
fold: Double Clp-N motif
superfamily: Double Clp-N motif
family: Double Clp-N motif
domain: N-terminal domain of ClpB (heat shock protein F84.1)
species: Thermus thermophilus [TaxId: 274]

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 17/98 (17%), Positives = 36/98 (36%)

Query: 84  KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
           +W+  A  + A A++ A+++K+           +L +  S   + L   G     ++E  
Sbjct: 2   RWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQ 61

Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
              L +      +     LT +   AL+ A     +  
Sbjct: 62  ERELARLPKVEGAEVGQYLTSRLSGALNRAEGLMEELK 99
>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone {Escherichia coli [TaxId: 562]} Length = 142 Back     information, alignment and structure
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock protein F84.1) {Escherichia coli [TaxId: 562]} Length = 139 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query185
d1qvra1145 N-terminal domain of ClpB (heat shock protein F84. 99.82
d1khya_139 N-terminal domain of ClpB (heat shock protein F84. 99.81
d1k6ka_142 N-terminal, ClpS-binding domain of ClpA, an Hsp100 99.65
d1khya_139 N-terminal domain of ClpB (heat shock protein F84. 99.12
d1k6ka_142 N-terminal, ClpS-binding domain of ClpA, an Hsp100 99.12
d1qvra1145 N-terminal domain of ClpB (heat shock protein F84. 98.73
d1u35c1106 macro-H2A.1, histone domain {Human (Homo sapiens) 88.74
d1tzya_106 Histone H2A {Chicken (Gallus gallus), erythrocytes 86.88
d1f66c_103 Histone H2A {Human (Homo sapiens), variant H2A.Z [ 82.72
d1q9ca_172 Histone domain of Son of sevenless protein {Human 81.88
>d1qvra1 a.174.1.1 (A:4-148) N-terminal domain of ClpB (heat shock protein F84.1) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: All alpha proteins
fold: Double Clp-N motif
superfamily: Double Clp-N motif
family: Double Clp-N motif
domain: N-terminal domain of ClpB (heat shock protein F84.1)
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=1.9e-20  Score=142.76  Aligned_cols=102  Identities=17%  Similarity=0.114  Sum_probs=96.8

Q ss_pred             hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 029953           84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLT  163 (185)
Q Consensus        84 ~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~~~~~~i~~s  163 (185)
                      +||++++++|..|+++|.+++|++|+++|||+||+.++++.+.++|+++|||.+.+++.++..+.+.|.+.+....+++|
T Consensus         2 kfT~~a~~~l~~A~~~A~~~~~~~i~~~HlL~all~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~~~~~~~~~~~s   81 (145)
T d1qvra1           2 RWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVGQYLT   81 (145)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCCCCGGGTTCEEC
T ss_pred             ccCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCCcchHHHHHHHcCCCHHHHHHHHHHHhhcccccCCCcccCCCC
Confidence            79999999999999999999999999999999999998889999999999999999999999999988765545678999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCC
Q 029953          164 EQAQRALDWAFNEKLKSGSLCI  185 (185)
Q Consensus       164 ~~a~~~Le~A~~~A~~lGd~yI  185 (185)
                      +.+.++|+.|+.+|.++||+||
T Consensus        82 ~~l~~il~~A~~~a~~~gd~~I  103 (145)
T d1qvra1          82 SRLSGALNRAEGLMEELKDRYV  103 (145)
T ss_dssp             HHHHHHHHHHHHHHHTTTCSSC
T ss_pred             HHHHHHHHHHHHHHHHcCCccc
Confidence            9999999999999999999997
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock protein F84.1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock protein F84.1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra1 a.174.1.1 (A:4-148) N-terminal domain of ClpB (heat shock protein F84.1) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Back     information, alignment and structure
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]} Back     information, alignment and structure
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure