Citrus Sinensis ID: 029961

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAESRGISL
Secondary Structure (PSIPRED)
cccEEEEEEEEEccHHHHHHHHHHHcccccccccccEEEEEEEEEEEEcccccEEEEEEEEEEcccccHHHHHHccccEEEEEEEEEEEccccEEEEEEEEccccEEEEEEEEEEEEEccccccccEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccHHHHHHHHHHHcccccccccccEEEEEEEEEcEccccccEEEEEEEEEEccccHHHHHHHHcccEEEEEEEEEEcccccEEEEEEEEEEcccEEEEEEEEEEEcccccccccEEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvkaytqehiykhpwervtsaswrkfadpenkrTLSHILEVDtlnhkldplsgklyttraltvhapgpwfVRKIIGqdichcvesTVVDAQSKSMQLTTRNVSLKKYIEVEEKiryephpdnptgwtvcrqetsirikplSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAESRGISL
Flexible Loop (DISEMBL)
mvkaytqehiykhpwervtsaswrkFADPENKRTLSHIlevdtlnhkldplSGKLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVvdaqsksmqlttrnvslKKYIEVEEkiryephpdnptgwtvCRQETSIRIKPLSALASMAEKVELRCAEKfmqnsvkgrevMERICKYleaesrgisl
Low Complexity Region (SEG)
MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAESRGISL
Disordered region (IsUnstruct)
*******EHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYL*********
Disordered Region (DISOPRED)
MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKF****VKGREVMERICKYLEA*******
Disordered Region (DISEMBL)
MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLE********
Disordered Region (DISPRO)
*VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAESRG***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAESRGISL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q54G07	228	Protein slowmo homolog OS	yes	no	0.843	0.684	0.351	2e-23
Q6TMK8	195	Protein slowmo homolog 2	yes	no	0.908	0.861	0.355	2e-23
Q9Y3B1	194	Protein slowmo homolog 2	yes	no	0.908	0.865	0.355	2e-23
Q58DB0	194	Protein slowmo homolog 2	yes	no	0.908	0.865	0.355	2e-23
Q4R5S9	194	Protein slowmo homolog 2	N/A	no	0.908	0.865	0.35	2e-23
Q6P9U4	195	Protein slowmo homolog 2	yes	no	0.908	0.861	0.35	6e-23
Q9CYY7	195	Protein slowmo homolog 2	yes	no	0.908	0.861	0.344	3e-22
A5GFX0	194	Protein slowmo homolog 2	yes	no	0.908	0.865	0.35	7e-22
Q96N28	172	Protein slowmo homolog 1	no	no	0.902	0.970	0.324	1e-19
Q8VE85	172	Protein slowmo homolog 1	no	no	0.902	0.970	0.312	7e-19

>sp|Q54G07|SLMO_DICDI Protein slowmo homolog OS=Dictyostelium discoideum GN=slmo PE=3 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 9/165 (5%)

Query: 6   TQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHA 65
           T +H YKH W   ++AS+RK+  PE       IL +D L+ ++DP +G L  T+ +    
Sbjct: 6   TIKHTYKHLWSDASTASFRKYPSPER----PDILSIDILSKEIDPTTGVLKCTKLIICKG 61

Query: 66  PGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTG 125
             P +++ I+G   C   E T VD ++K M L T+N++    + V+E   YE HPDN   
Sbjct: 62  NTPSWLKSILGSGECLFYEETTVDPKNKIMTLKTKNLNFTNILGVDEVCTYEQHPDNEE- 120

Query: 126 WTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVME 170
           WT+  QE ++     S++  +A K+E  C ++F+ N+ KGR++ME
Sbjct: 121 WTLFTQEATVT----SSIFGVARKMEAFCLDRFVANAGKGRKIME 161

Dictyostelium discoideum (taxid: 44689)

>sp|Q6TMK8|SLMO2_CRIGR Protein slowmo homolog 2 OS=Cricetulus griseus GN=SLMO2 PE=2 SV=1

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 102/180 (56%), Gaps = 12/180 (6%)

Query: 2   VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRAL 61
           +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L
Sbjct: 1   MKIWTSEHVFDHPWEMVTTAAMQKYPNPMNPS----VVGVDVLDRHVDP-SGKLHSHRLL 55

Query: 62  TVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPH 119
           +     P  V+ +IG  +   +  E +VVD   K+M+L + N+S    + V+E++ Y+PH
Sbjct: 56  STEWGLPSIVKSLIGAARTKTYVQEHSVVDPVKKTMELKSTNISFTNMVSVDERLTYKPH 115

Query: 120 PDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 179
           P +P   TV  QE  I +K +    S++  +E   A     N+ KGRE ME +   L AE
Sbjct: 116 PQDPEK-TVLTQEAIITVKGV----SLSSYLEGLMASTISSNANKGREAMEWVIHKLNAE 170

Cricetulus griseus (taxid: 10029)

>sp|Q9Y3B1|SLMO2_HUMAN Protein slowmo homolog 2 OS=Homo sapiens GN=SLMO2 PE=1 SV=2

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 102/180 (56%), Gaps = 12/180 (6%)

Query: 2   VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRAL 61
           +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L
Sbjct: 1   MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHIDP-SGKLHSHRLL 55

Query: 62  TVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPH 119
           +     P  V+ +IG  +   +  E +VVD   K+M+L + N+S    + V+E++ Y+PH
Sbjct: 56  STEWGLPSIVKSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPH 115

Query: 120 PDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 179
           P +P   TV  QE  I +K +    S++  +E   A     N+ KGRE ME +   L AE
Sbjct: 116 PQDPEK-TVLTQEAIITVKGV----SLSSYLEGLMASTISSNASKGREAMEWVIHKLNAE 170

Homo sapiens (taxid: 9606)

>sp|Q58DB0|SLMO2_BOVIN Protein slowmo homolog 2 OS=Bos taurus GN=SLMO2 PE=2 SV=1

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 101/180 (56%), Gaps = 12/180 (6%)

Query: 2   VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRAL 61
           +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L
Sbjct: 1   MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHIDP-SGKLHSHRLL 55

Query: 62  TVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPH 119
           +     P  V+ IIG  +   +  E +VVD   K+M+L + N+S    + V+E++ Y+PH
Sbjct: 56  STEWGLPSIVKSIIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPH 115

Query: 120 PDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 179
           P +P   T+  QE  I +K +    S+   +E   A     N+ KGRE ME +   L AE
Sbjct: 116 PQDPEK-TILTQEAIITVKGV----SLGSYLEGLMASTISSNANKGREAMEWVIHKLNAE 170

Bos taurus (taxid: 9913)

>sp|Q4R5S9|SLMO2_MACFA Protein slowmo homolog 2 OS=Macaca fascicularis GN=SLMO2 PE=2 SV=1

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 102/180 (56%), Gaps = 12/180 (6%)

Query: 2   VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRAL 61
           +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L
Sbjct: 1   MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHIDP-SGKLHSHRLL 55

Query: 62  TVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPH 119
           +     P  V+ +IG  +   +  E +VVD   K+M+L + N+S    + V+E++ Y+PH
Sbjct: 56  STEWGLPSIVKSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPH 115

Query: 120 PDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 179
           P +P   T+  QE  I +K +    S++  +E   A     N+ KGRE ME +   L AE
Sbjct: 116 PQDPDK-TILTQEAIITVKGV----SLSSYLEGLMASTISSNASKGREAMEWVIHKLNAE 170

Macaca fascicularis (taxid: 9541)

>sp|Q6P9U4|SLMO2_RAT Protein slowmo homolog 2 OS=Rattus norvegicus GN=Slmo2 PE=2 SV=1

 Score =  107 bits (266), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 102/180 (56%), Gaps = 12/180 (6%)

Query: 2   VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRAL 61
           +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L
Sbjct: 1   MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHVDP-SGKLHSHRLL 55

Query: 62  TVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPH 119
           +     P  V+ +IG  +   +  E +VVD   ++M+L + N+S    + V+E++ Y+PH
Sbjct: 56  STEWGLPSIVKSLIGAARTKTYVQEHSVVDPIRRTMELKSTNISFTNMVSVDERLTYKPH 115

Query: 120 PDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 179
           P +P   TV  QE  I +K +    S++  +E   A     N+ KGRE ME +   L AE
Sbjct: 116 PQDPEK-TVLTQEALITVKGV----SLSSYLEGLMASTISSNANKGREAMEWVIHKLNAE 170

Rattus norvegicus (taxid: 10116)

>sp|Q9CYY7|SLMO2_MOUSE Protein slowmo homolog 2 OS=Mus musculus GN=Slmo2 PE=2 SV=2

 Score =  104 bits (260), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 102/180 (56%), Gaps = 12/180 (6%)

Query: 2   VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRAL 61
           +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L
Sbjct: 1   MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHVDP-SGKLHSHRLL 55

Query: 62  TVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPH 119
           +     P  V+ +IG  +   +  E +VVD  +++M+L + N+S    + V+E++ Y+PH
Sbjct: 56  STEWGLPSIVKSLIGAARTKTYVQEHSVVDPVTRTMELKSTNISFTNMVSVDERLTYKPH 115

Query: 120 PDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 179
             +P   TV  QE  I +K +    S++  +E   A     N+ KGRE ME +   L AE
Sbjct: 116 LQDPEK-TVLTQEALITVKGV----SLSSYLEGLMASTISSNASKGREAMEWVIHKLNAE 170

Mus musculus (taxid: 10090)

>sp|A5GFX0|SLMO2_PIG Protein slowmo homolog 2 OS=Sus scrofa GN=SLMO2 PE=3 SV=1

 Score =  103 bits (257), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 100/180 (55%), Gaps = 12/180 (6%)

Query: 2   VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRAL 61
           +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +D  SGKL++ R L
Sbjct: 1   MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHIDA-SGKLHSHRLL 55

Query: 62  TVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPH 119
           +     P  V+ IIG  +   +  E +VVD  +K+M+L + N+S    + V+E++ Y+PH
Sbjct: 56  STEWGLPSIVKSIIGAARTKTYVQEHSVVDPVAKTMELKSTNISFTNMVSVDERLIYKPH 115

Query: 120 PDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 179
           P +    TV  QE  I +K +    S+   +E   A     N+ KGRE ME +   L AE
Sbjct: 116 PQDSEK-TVLTQEAIITVKGV----SLGSYLEGLMASTISSNANKGREAMEWVIHKLNAE 170

Sus scrofa (taxid: 9823)

>sp|Q96N28|SLMO1_HUMAN Protein slowmo homolog 1 OS=Homo sapiens GN=SLMO1 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 12/179 (6%)

Query: 2   VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRAL 61
           +K ++ EH++ HPW+ V  A+ RK+ +P N      +L VD L  ++D   G+L++ R L
Sbjct: 1   MKIWSSEHVFGHPWDTVIQAAMRKYPNPMNPS----VLGVDVLQRRVDG-RGRLHSLRLL 55

Query: 62  TVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPH 119
           +     P  VR I+G  + + +  E +VVD   K M+L + N++L   + V E++ Y PH
Sbjct: 56  STEWGLPSLVRAILGTSRTLTYIREHSVVDPVEKKMELCSTNITLTNLVSVNERLVYTPH 115

Query: 120 PDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEA 178
           P+NP   TV  QE  I +K +    S+   +E   A     N+ KG   +E I ++ E+
Sbjct: 116 PENPE-MTVLTQEAIITVKGI----SLGSYLESLMANTISSNAKKGWAAIEWIIEHSES 169

Homo sapiens (taxid: 9606)

>sp|Q8VE85|SLMO1_MOUSE Protein slowmo homolog 1 OS=Mus musculus GN=Slmo1 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 12/179 (6%)

Query: 2   VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRAL 61
           +K ++ EH++ HPW+ V  A+ RK+ +P N      ++ VD L   +D   G+L++ R L
Sbjct: 1   MKIWSSEHVFGHPWDTVIKAAMRKYPNPMNP----CVVGVDVLERSVDG-CGRLHSLRLL 55

Query: 62  TVHAPGPWFVRKIIGQD--ICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPH 119
           +     P  VR I+G +  + +  E +VVD  ++ M+L + N++L   + V E++ Y PH
Sbjct: 56  STEWGLPGLVRAILGANRTLTYIKERSVVDPAARKMELCSTNITLTNLVSVNERLVYTPH 115

Query: 120 PDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEA 178
           P+NP   TV  QE  I +K +    S+   +E   A     N+ KG   +E I ++ E+
Sbjct: 116 PENPEK-TVLTQEAIITVKGI----SLGSYLESLMATTISSNAKKGWAAIEWIIEHSES 169

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
225435502	185	PREDICTED: protein slowmo homolog [Vitis	1.0	1.0	0.881	5e-96
224057482	185	predicted protein [Populus trichocarpa]	1.0	1.0	0.881	2e-95
255544808	388	Protein MSF1, putative [Ricinus communis	1.0	0.476	0.843	4e-93
356557557	185	PREDICTED: protein slowmo homolog 2 isof	1.0	1.0	0.848	1e-92
255590530	185	Protein MSF1, putative [Ricinus communis	1.0	1.0	0.843	4e-92
449442517	185	PREDICTED: protein slowmo homolog 2-like	1.0	1.0	0.843	2e-91
255625851	193	unknown [Glycine max]	0.956	0.917	0.853	4e-89
15240002	183	MSF1-like protein [Arabidopsis thaliana]	0.989	1.0	0.830	6e-89
297807323	183	hypothetical protein ARALYDRAFT_488123 [	0.989	1.0	0.830	9e-89
357454333	183	Slowmo-like protein [Medicago truncatula	0.989	1.0	0.729	2e-76

>gi|225435502|ref|XP_002285535.1| PREDICTED: protein slowmo homolog [Vitis vinifera] gi|297746353|emb|CBI16409.3| unnamed protein product [Vitis vinifera]

 Score =  355 bits (910), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 163/185 (88%), Positives = 176/185 (95%)

Query: 1   MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRA 60
           MVKAYTQEH+YKHPWERVTSASWRKF DPENKR LSHI+EVDTLN KLD  SGKLYTTR 
Sbjct: 1   MVKAYTQEHVYKHPWERVTSASWRKFTDPENKRILSHIVEVDTLNRKLDSASGKLYTTRV 60

Query: 61  LTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHP 120
           +TVHAPGPWF+RKIIGQDICHCVEST+VDAQS+SMQLTTRN SL+K++EVEEKIRYEPHP
Sbjct: 61  ITVHAPGPWFIRKIIGQDICHCVESTIVDAQSRSMQLTTRNSSLQKFVEVEEKIRYEPHP 120

Query: 121 DNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAES 180
           DNP GWT+C+QETSIRIKPLSALASMAEKVE RCAEKF+QNSVKGREVMERICKYLEAES
Sbjct: 121 DNPNGWTICQQETSIRIKPLSALASMAEKVEQRCAEKFLQNSVKGREVMERICKYLEAES 180

Query: 181 RGISL 185
           RGIS+
Sbjct: 181 RGISI 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057482|ref|XP_002299237.1| predicted protein [Populus trichocarpa] gi|222846495|gb|EEE84042.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (905), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 163/185 (88%), Positives = 178/185 (96%)

Query: 1   MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRA 60
           MVKAY QEH+YKHPWERVTSASWRKF+DPENKRTLSHI+EVDTLNHKLDP SGKLYTTRA
Sbjct: 1   MVKAYGQEHVYKHPWERVTSASWRKFSDPENKRTLSHIIEVDTLNHKLDPESGKLYTTRA 60

Query: 61  LTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHP 120
           +TVHAPGPWFVRKIIGQDICHCVESTVVDA++KSMQLTT N+SL+K++EVEEKIRY+PHP
Sbjct: 61  ITVHAPGPWFVRKIIGQDICHCVESTVVDARTKSMQLTTCNISLQKFLEVEEKIRYDPHP 120

Query: 121 DNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAES 180
           DNP  WTVCRQETSIRIKPLSALASMAEKVE +CAEKFMQNS KGREVMER+CKYLEAES
Sbjct: 121 DNPNEWTVCRQETSIRIKPLSALASMAEKVEQKCAEKFMQNSAKGREVMERMCKYLEAES 180

Query: 181 RGISL 185
           RGI++
Sbjct: 181 RGIAM 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544808|ref|XP_002513465.1| Protein MSF1, putative [Ricinus communis] gi|223547373|gb|EEF48868.1| Protein MSF1, putative [Ricinus communis]

 Score =  345 bits (886), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 156/185 (84%), Positives = 174/185 (94%)

Query: 1   MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRA 60
           MV+AY QEH+YKHPWERVTSASWRKF DPENKR LSH+LEVDTLN KLD  +GKLYTTRA
Sbjct: 204 MVRAYKQEHVYKHPWERVTSASWRKFTDPENKRVLSHVLEVDTLNRKLDREAGKLYTTRA 263

Query: 61  LTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHP 120
           +TVHAPGPWF+RKIIGQ+ICHCVESTVVDAQ++SMQL++RN+SL+K+IEVEEKIRY+PHP
Sbjct: 264 VTVHAPGPWFIRKIIGQEICHCVESTVVDAQTRSMQLSSRNISLQKFIEVEEKIRYDPHP 323

Query: 121 DNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAES 180
           DNPT WT+CRQETSIRIKPLSALASMAEK+E RC EKF+QNS KGREVMERICKYLEAES
Sbjct: 324 DNPTAWTLCRQETSIRIKPLSALASMAEKIEQRCVEKFLQNSAKGREVMERICKYLEAES 383

Query: 181 RGISL 185
            GISL
Sbjct: 384 GGISL 388

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557557|ref|XP_003547082.1| PREDICTED: protein slowmo homolog 2 isoform 1 [Glycine max] gi|356557559|ref|XP_003547083.1| PREDICTED: protein slowmo homolog 2 isoform 2 [Glycine max]

 Score =  343 bits (881), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 157/185 (84%), Positives = 174/185 (94%)

Query: 1   MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRA 60
           MVKAYTQEH+YKHPWERVT ASWRKFAD ENKR LSHIL+VDTLNH LDP SG LYTTRA
Sbjct: 1   MVKAYTQEHVYKHPWERVTCASWRKFADQENKRILSHILDVDTLNHSLDPSSGMLYTTRA 60

Query: 61  LTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHP 120
           +T+H PGPWFVRKI+GQDICHCVESTVVDA+S+SMQLT+RN+SL+K+IEVEEKIRY+PHP
Sbjct: 61  ITIHCPGPWFVRKIVGQDICHCVESTVVDARSRSMQLTSRNISLQKFIEVEEKIRYDPHP 120

Query: 121 DNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAES 180
           DNPTGWT+C+QET IRIKPLSALASMAEKVE RCAEKF+QNSVKGREVMERICKYLEAES
Sbjct: 121 DNPTGWTICQQETRIRIKPLSALASMAEKVEQRCAEKFLQNSVKGREVMERICKYLEAES 180

Query: 181 RGISL 185
             ++L
Sbjct: 181 SSLAL 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255590530|ref|XP_002535293.1| Protein MSF1, putative [Ricinus communis] gi|223523530|gb|EEF27091.1| Protein MSF1, putative [Ricinus communis]

 Score =  342 bits (877), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 156/185 (84%), Positives = 174/185 (94%)

Query: 1   MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRA 60
           MV+AY QEH+YKHPWERVTSASWRKF DPENKR LSH+LEVDTLN KLD  +GKLYTTRA
Sbjct: 1   MVRAYKQEHVYKHPWERVTSASWRKFTDPENKRVLSHVLEVDTLNRKLDREAGKLYTTRA 60

Query: 61  LTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHP 120
           +TVHAPGPWF+RKIIGQ+ICHCVESTVVDAQ++SMQL++RN+SL+K+IEVEEKIRY+PHP
Sbjct: 61  VTVHAPGPWFIRKIIGQEICHCVESTVVDAQTRSMQLSSRNISLQKFIEVEEKIRYDPHP 120

Query: 121 DNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAES 180
           DNPT WT+CRQETSIRIKPLSALASMAEK+E RC EKF+QNS KGREVMERICKYLEAES
Sbjct: 121 DNPTAWTLCRQETSIRIKPLSALASMAEKIEQRCVEKFLQNSAKGREVMERICKYLEAES 180

Query: 181 RGISL 185
            GISL
Sbjct: 181 GGISL 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442517|ref|XP_004139028.1| PREDICTED: protein slowmo homolog 2-like [Cucumis sativus] gi|449476047|ref|XP_004154625.1| PREDICTED: protein slowmo homolog 2-like [Cucumis sativus]

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 156/185 (84%), Positives = 174/185 (94%)

Query: 1   MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRA 60
           MVKAY+QE+ YKHPWERVT ASWRKFADPENKRTLSHILEVDTLN K+D  SGKLYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDAESGKLYTTRA 60

Query: 61  LTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHP 120
           +T+HAPGPWFVRKI+GQDICHCVESTVVDA+S+SMQLTTRN+SL+K+IEV EKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120

Query: 121 DNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAES 180
           +NP GWT+C+QETSI+IKPLSALASMAEKVE RCAEKF+QNS KGREVMERICKYLEAES
Sbjct: 121 ENPNGWTICKQETSIQIKPLSALASMAEKVEQRCAEKFVQNSAKGREVMERICKYLEAES 180

Query: 181 RGISL 185
            G ++
Sbjct: 181 SGFAI 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255625851|gb|ACU13270.1| unknown [Glycine max]

 Score =  332 bits (851), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 151/177 (85%), Positives = 167/177 (94%)

Query: 1   MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRA 60
           MVKAYTQEH+YKHPWERVT ASWRKFAD ENKR LSHIL+VDTLNH LDP SGKLYTTRA
Sbjct: 1   MVKAYTQEHVYKHPWERVTCASWRKFADQENKRILSHILDVDTLNHSLDPSSGKLYTTRA 60

Query: 61  LTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHP 120
           +T+H PGPWFVRKI+GQDICHCVESTVVDA+S+SMQLT+RN+SL+K+IEVEEKIRY+PHP
Sbjct: 61  ITIHCPGPWFVRKIVGQDICHCVESTVVDARSRSMQLTSRNISLQKFIEVEEKIRYDPHP 120

Query: 121 DNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLE 177
           DNPTGWT+C+QET IRIKPLSALASMAEKVE RCAEKF+QNSVKGREVMERIC  L+
Sbjct: 121 DNPTGWTICQQETRIRIKPLSALASMAEKVEQRCAEKFLQNSVKGREVMERICNILK 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240002|ref|NP_196811.1| MSF1-like protein [Arabidopsis thaliana] gi|9955551|emb|CAC05435.1| putative protein [Arabidopsis thaliana] gi|62867619|gb|AAY17413.1| At5g13070 [Arabidopsis thaliana] gi|66841354|gb|AAY57314.1| At5g13070 [Arabidopsis thaliana] gi|332004464|gb|AED91847.1| MSF1-like protein [Arabidopsis thaliana]

 Score =  332 bits (850), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 152/183 (83%), Positives = 170/183 (92%)

Query: 1   MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRA 60
           MVKAY QEH+YKHPWERV++ASWRKFADPENKR LSHILEVDTLN KLD  +GKL+TTRA
Sbjct: 1   MVKAYRQEHVYKHPWERVSAASWRKFADPENKRILSHILEVDTLNRKLDTETGKLHTTRA 60

Query: 61  LTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHP 120
           LT+HAPGPWF+ +IIGQDICHCVESTVVD +S+SMQLTT+N+SLKK+IEVEE+IRY+PHP
Sbjct: 61  LTIHAPGPWFLHRIIGQDICHCVESTVVDGKSRSMQLTTKNISLKKFIEVEERIRYDPHP 120

Query: 121 DNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAES 180
           DNP+ WTVC QETSIRIKPLSALASMAEKVE +CAEKFMQNS KGREVMERICKY+EAES
Sbjct: 121 DNPSAWTVCSQETSIRIKPLSALASMAEKVEQKCAEKFMQNSAKGREVMERICKYMEAES 180

Query: 181 RGI 183
             I
Sbjct: 181 ARI 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807323|ref|XP_002871545.1| hypothetical protein ARALYDRAFT_488123 [Arabidopsis lyrata subsp. lyrata] gi|297317382|gb|EFH47804.1| hypothetical protein ARALYDRAFT_488123 [Arabidopsis lyrata subsp. lyrata]

 Score =  331 bits (848), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 152/183 (83%), Positives = 171/183 (93%)

Query: 1   MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRA 60
           MVKAY QEH+YKHPWERV++ASWRKFADPENKR LSHILEVDTLN KLD  +GKL+TTRA
Sbjct: 1   MVKAYRQEHVYKHPWERVSAASWRKFADPENKRILSHILEVDTLNRKLDTETGKLHTTRA 60

Query: 61  LTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHP 120
           LT+HAPGPWF+ +IIGQDICHCVESTVVD +S+SMQLTT+N+SLKK+IEVEE+IRY+PHP
Sbjct: 61  LTIHAPGPWFLHRIIGQDICHCVESTVVDGKSRSMQLTTKNISLKKFIEVEERIRYDPHP 120

Query: 121 DNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAES 180
           +NP+ WTVC QETSIRIKPLSALASMAEKVE +CAEKFMQNSVKGREVMERICKY+EAES
Sbjct: 121 ENPSAWTVCSQETSIRIKPLSALASMAEKVEQKCAEKFMQNSVKGREVMERICKYMEAES 180

Query: 181 RGI 183
             I
Sbjct: 181 ARI 183

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454333|ref|XP_003597447.1| Slowmo-like protein [Medicago truncatula] gi|355486495|gb|AES67698.1| Slowmo-like protein [Medicago truncatula]

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 135/185 (72%), Positives = 155/185 (83%), Gaps = 2/185 (1%)

Query: 1   MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRA 60
           MVK+Y QEH+Y HPWERVTSASWRKF D ENKR L HIL+ +TLN  LD  SGKLY TRA
Sbjct: 1   MVKSYKQEHVYNHPWERVTSASWRKFTDAENKRVLPHILDCNTLNTSLDSSSGKLYATRA 60

Query: 61  LTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHP 120
           +TV  P  W VR+IIG+DICHCVESTVVDA+S+SMQ+  RN+S++K+IEVEEK RY+PHP
Sbjct: 61  ITVRCP--WLVRRIIGEDICHCVESTVVDAKSRSMQICYRNISMEKFIEVEEKTRYDPHP 118

Query: 121 DNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAES 180
           DNP GWTVC+QET IRIKPLSALASMAEKVE RCA++F+ NS K R+VMERICKY EAES
Sbjct: 119 DNPNGWTVCQQETRIRIKPLSALASMAEKVEQRCADRFLHNSAKSRDVMERICKYHEAES 178

Query: 181 RGISL 185
              SL
Sbjct: 179 SSFSL 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2179852	183	AT5G13070 [Arabidopsis thalian	0.989	1.0	0.830	2.4e-83
DICTYBASE|DDB_G0290499	228	slmo "slowmo family protein" [	0.843	0.684	0.351	6.8e-24
UNIPROTKB|Q9Y3B1	194	SLMO2 "Protein slowmo homolog	0.908	0.865	0.366	8.7e-24
UNIPROTKB|E2QTP4	194	SLMO2 "Uncharacterized protein	0.908	0.865	0.366	1.1e-23
RGD|1594395	195	Slmo2 "slowmo homolog 2 (Droso	0.908	0.861	0.361	2.9e-23
MGI|MGI:1913640	195	Slmo2 "slowmo homolog 2 (Droso	0.908	0.861	0.355	1.3e-22
UNIPROTKB|F1MSM0	194	SLMO2 "Protein slowmo homolog	0.908	0.865	0.361	1.6e-22
UNIPROTKB|F1NMX7	196	SLMO2 "Uncharacterized protein	0.902	0.852	0.351	3.4e-22
UNIPROTKB|A5GFX0	194	SLMO2 "Protein slowmo homolog	0.908	0.865	0.361	3.4e-22
UNIPROTKB|Q96N28	172	SLMO1 "Protein slowmo homolog	0.902	0.970	0.335	1.7e-20

TAIR|locus:2179852 AT5G13070 [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 152/183 (83%), Positives = 170/183 (92%)

Query:     1 MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRA 60
             MVKAY QEH+YKHPWERV++ASWRKFADPENKR LSHILEVDTLN KLD  +GKL+TTRA
Sbjct:     1 MVKAYRQEHVYKHPWERVSAASWRKFADPENKRILSHILEVDTLNRKLDTETGKLHTTRA 60

Query:    61 LTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHP 120
             LT+HAPGPWF+ +IIGQDICHCVESTVVD +S+SMQLTT+N+SLKK+IEVEE+IRY+PHP
Sbjct:    61 LTIHAPGPWFLHRIIGQDICHCVESTVVDGKSRSMQLTTKNISLKKFIEVEERIRYDPHP 120

Query:   121 DNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAES 180
             DNP+ WTVC QETSIRIKPLSALASMAEKVE +CAEKFMQNS KGREVMERICKY+EAES
Sbjct:   121 DNPSAWTVCSQETSIRIKPLSALASMAEKVEQKCAEKFMQNSAKGREVMERICKYMEAES 180

Query:   181 RGI 183
               I
Sbjct:   181 ARI 183

GO:0005739 "mitochondrion" evidence=ISM

DICTYBASE|DDB_G0290499 slmo "slowmo family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 58/165 (35%), Positives = 94/165 (56%)

Query:     6 TQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHA 65
             T +H YKH W   ++AS+RK+  PE       IL +D L+ ++DP +G L  T+ +    
Sbjct:     6 TIKHTYKHLWSDASTASFRKYPSPERP----DILSIDILSKEIDPTTGVLKCTKLIICKG 61

Query:    66 PGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTG 125
               P +++ I+G   C   E T VD ++K M L T+N++    + V+E   YE HPDN   
Sbjct:    62 NTPSWLKSILGSGECLFYEETTVDPKNKIMTLKTKNLNFTNILGVDEVCTYEQHPDNEE- 120

Query:   126 WTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVME 170
             WT+  QE ++     S++  +A K+E  C ++F+ N+ KGR++ME
Sbjct:   121 WTLFTQEATVT----SSIFGVARKMEAFCLDRFVANAGKGRKIME 161

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q9Y3B1 SLMO2 "Protein slowmo homolog 2" [Homo sapiens (taxid:9606)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 66/180 (36%), Positives = 103/180 (57%)

Query:     2 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRAL 61
             +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L
Sbjct:     1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHIDP-SGKLHSHRLL 55

Query:    62 TVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPH 119
             +     P  V+ +IG  +   +  E +VVD   K+M+L + N+S    + V+E++ Y+PH
Sbjct:    56 STEWGLPSIVKSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPH 115

Query:   120 PDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 179
             P +P   TV  QE  I +K +S L+S  E +    A     N+ KGRE ME +   L AE
Sbjct:   116 PQDPEK-TVLTQEAIITVKGVS-LSSYLEGL---MASTISSNASKGREAMEWVIHKLNAE 170

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2QTP4 SLMO2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 66/180 (36%), Positives = 103/180 (57%)

Query:     2 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRAL 61
             +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L
Sbjct:     1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHIDP-SGKLHSHRLL 55

Query:    62 TVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPH 119
             +     P  V+ +IG  +   +  E +VVD   K+M+L + N+S    + V+E++ Y+PH
Sbjct:    56 STEWGLPSIVKSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPH 115

Query:   120 PDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 179
             P +P   TV  QE  I +K +S L+S  E +    A     N+ KGRE ME +   L AE
Sbjct:   116 PQDPEK-TVLTQEAIISVKGVS-LSSYLEGL---MASTISSNANKGREAMEWVIHKLNAE 170

GO:0005739 "mitochondrion" evidence=IEA

RGD|1594395 Slmo2 "slowmo homolog 2 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 65/180 (36%), Positives = 103/180 (57%)

Query:     2 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRAL 61
             +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L
Sbjct:     1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHVDP-SGKLHSHRLL 55

Query:    62 TVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPH 119
             +     P  V+ +IG  +   +  E +VVD   ++M+L + N+S    + V+E++ Y+PH
Sbjct:    56 STEWGLPSIVKSLIGAARTKTYVQEHSVVDPIRRTMELKSTNISFTNMVSVDERLTYKPH 115

Query:   120 PDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 179
             P +P   TV  QE  I +K +S L+S  E +    A     N+ KGRE ME +   L AE
Sbjct:   116 PQDPEK-TVLTQEALITVKGVS-LSSYLEGL---MASTISSNANKGREAMEWVIHKLNAE 170

GO:0005739 "mitochondrion" evidence=ISO

MGI|MGI:1913640 Slmo2 "slowmo homolog 2 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 64/180 (35%), Positives = 103/180 (57%)

Query:     2 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRAL 61
             +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L
Sbjct:     1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHVDP-SGKLHSHRLL 55

Query:    62 TVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPH 119
             +     P  V+ +IG  +   +  E +VVD  +++M+L + N+S    + V+E++ Y+PH
Sbjct:    56 STEWGLPSIVKSLIGAARTKTYVQEHSVVDPVTRTMELKSTNISFTNMVSVDERLTYKPH 115

Query:   120 PDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 179
               +P   TV  QE  I +K +S L+S  E +    A     N+ KGRE ME +   L AE
Sbjct:   116 LQDPEK-TVLTQEALITVKGVS-LSSYLEGL---MASTISSNASKGREAMEWVIHKLNAE 170

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1MSM0 SLMO2 "Protein slowmo homolog 2" [Bos taurus (taxid:9913)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 65/180 (36%), Positives = 100/180 (55%)

Query:     2 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRAL 61
             +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +DP SGKL++ R L
Sbjct:     1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHIDP-SGKLHSHRLL 55

Query:    62 TVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPH 119
             +     P  V+ IIG  +   +  E +VVD   K+M+L + N+S    + V+E++ Y PH
Sbjct:    56 STEWGLPSIVKSIIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYNPH 115

Query:   120 PDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 179
               +P   T+  QE  I +K +S L S  E +    A     N+ KGRE ME +   L AE
Sbjct:   116 LQDPEK-TILTQEAIITVKGVS-LGSYLEGL---MASTISSNANKGREAMEWVIHKLNAE 170

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1NMX7 SLMO2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 63/179 (35%), Positives = 100/179 (55%)

Query:     3 KAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALT 62
             K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +D  SGKL++ R L+
Sbjct:     1 KIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHIDS-SGKLHSHRLLS 55

Query:    63 VHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHP 120
                  P  V+ +IG  +   +  E ++VD   K+M+L + N+S    + V+E++ Y+PHP
Sbjct:    56 TEWGIPSIVKSLIGTSRTKTYVQEHSIVDPLKKTMELKSSNISFTNLVSVDERLVYKPHP 115

Query:   121 DNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 179
               P   TV  QE  I +K +S L+S  E +    A     N+ KGRE +E +   L AE
Sbjct:   116 HEPDK-TVLTQEAIISVKGVS-LSSYLEGL---MANTISSNANKGREALEWVINRLNAE 169

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|A5GFX0 SLMO2 "Protein slowmo homolog 2" [Sus scrofa (taxid:9823)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 65/180 (36%), Positives = 101/180 (56%)

Query:     2 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRAL 61
             +K +T EH++ HPWE VT+A+ +K+ +P N      ++ VD L+  +D  SGKL++ R L
Sbjct:     1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHIDA-SGKLHSHRLL 55

Query:    62 TVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPH 119
             +     P  V+ IIG  +   +  E +VVD  +K+M+L + N+S    + V+E++ Y+PH
Sbjct:    56 STEWGLPSIVKSIIGAARTKTYVQEHSVVDPVAKTMELKSTNISFTNMVSVDERLIYKPH 115

Query:   120 PDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 179
             P +    TV  QE  I +K +S L S  E +    A     N+ KGRE ME +   L AE
Sbjct:   116 PQDSEK-TVLTQEAIITVKGVS-LGSYLEGL---MASTISSNANKGREAMEWVIHKLNAE 170

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q96N28 SLMO1 "Protein slowmo homolog 1" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 60/179 (33%), Positives = 97/179 (54%)

Query:     2 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRAL 61
             +K ++ EH++ HPW+ V  A+ RK+ +P N      +L VD L  ++D   G+L++ R L
Sbjct:     1 MKIWSSEHVFGHPWDTVIQAAMRKYPNPMNPS----VLGVDVLQRRVDG-RGRLHSLRLL 55

Query:    62 TVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPH 119
             +     P  VR I+G  + + +  E +VVD   K M+L + N++L   + V E++ Y PH
Sbjct:    56 STEWGLPSLVRAILGTSRTLTYIREHSVVDPVEKKMELCSTNITLTNLVSVNERLVYTPH 115

Query:   120 PDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEA 178
             P+NP   TV  QE  I +K +S L S  E +    A     N+ KG   +E I ++ E+
Sbjct:   116 PENPE-MTVLTQEAIITVKGIS-LGSYLESL---MANTISSNAKKGWAAIEWIIEHSES 169

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O59707	UPS2_SCHPO	No assigned EC number	0.3121	0.8702	0.875	yes	no
Q9Y3B1	SLMO2_HUMAN	No assigned EC number	0.3555	0.9081	0.8659	yes	no
Q9CYY7	SLMO2_MOUSE	No assigned EC number	0.3444	0.9081	0.8615	yes	no
Q6P9U4	SLMO2_RAT	No assigned EC number	0.35	0.9081	0.8615	yes	no
A5GFX0	SLMO2_PIG	No assigned EC number	0.35	0.9081	0.8659	yes	no
Q6TMK8	SLMO2_CRIGR	No assigned EC number	0.3555	0.9081	0.8615	yes	no
Q58DB0	SLMO2_BOVIN	No assigned EC number	0.3555	0.9081	0.8659	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024642001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (202 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
pfam04707	157	pfam04707, PRELI, PRELI-like family	1e-54

>gnl|CDD|218219 pfam04707, PRELI, PRELI-like family

 Score =  169 bits (431), Expect = 1e-54
 Identities = 63/165 (38%), Positives = 98/165 (59%), Gaps = 9/165 (5%)

Query: 16  ERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKII 75
           E+VT+A WR++ +P +     H++ VD L  K+D   GKL+T R LT     P +++K+I
Sbjct: 1   EQVTAAFWRRYPNPYSP----HVISVDVLERKVDD-DGKLHTERLLTKQGRLPRWLKKLI 55

Query: 76  G-QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETS 134
           G  D  + +E +VVD + +++ L TRN++    + V+E+  Y PHP+NP  WT   QE S
Sbjct: 56  GVADTVYVLEVSVVDPKKRTLTLETRNLTFSSRLSVDERCTYTPHPENP-NWTCFDQEAS 114

Query: 135 IRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 179
           I +K   +    + KVE    ++F QN+ KGRE ME + + LE E
Sbjct: 115 ISVK--GSFFGFSSKVEKWSLKRFSQNAKKGREGMEYVLQELEEE 157

This family includes a conserved region found in the PRELI protein and yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. This region is also found in a number of other eukaryotic proteins. Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
KOG3336	185	consensus Predicted member of the intramitochondri	100.0
PF04707	157	PRELI: PRELI-like family; InterPro: IPR006797 Thes	100.0
KOG3337	201	consensus Protein similar to predicted member of t	100.0
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	97.39
PF02121	254	IP_trans: Phosphatidylinositol transfer protein; I	96.6
cd08889	260	SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain	89.34
cd07815	251	SRPBCC_PITP Lipid-binding SRPBCC domain of Class I	89.22
cd08905	209	START_STARD1-like Cholesterol-binding START domain	88.8
cd08888	258	SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain o	87.74
KOG3668	269	consensus Phosphatidylinositol transfer protein [L	86.97
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	85.95
cd08890	250	SRPBCC_PITPNC1_like Lipid-binding SRPBCC domain of	85.4

>KOG3336 consensus Predicted member of the intramitochondrial sorting protein family [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.8e-65  Score=397.40  Aligned_cols=175  Identities=45%  Similarity=0.767  Sum_probs=167.3

Q ss_pred             ceEEEeeEEeeCChHHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCC-ceE
Q 029961            2 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQ-DIC   80 (185)
Q Consensus         2 vk~~~~~~~y~~pwe~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~-~~~   80 (185)
                      ||+|+++|+|+||||+|++|.|+|||||++    +||+.+|||+|++|+ .|+|+|+|||++++.+|+|+.+|+|. ..|
T Consensus         1 MKi~~seh~F~hPwE~Vt~A~w~KyPnp~~----~hVi~VDvl~R~l~~-~GkL~TeRlit~~~~~P~w~~~LiG~a~~~   75 (185)
T KOG3336|consen    1 MKIFQSEHIFDHPWETVTAAAWRKYPNPIN----THVIGVDVLDRKLDD-SGKLHTERLITIHQGLPSWIHKLIGGANTC   75 (185)
T ss_pred             CccccccccccCcHHHHHHHHHHhCCCCCC----CceEEEeeeeeeecc-CceEEEeeeeeeccCCcHHHHHHhCcccce
Confidence            899999999999999999999999999987    699999999999996 78999999999999999999999987 568


Q ss_pred             EEEEEEEEeCCCCeEEEEEEeecccceEEEEEEEEEeeCCCCCCCceEEEEEEEEEEecccchHHHHHHHHHHHHHHHHH
Q 029961           81 HCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQ  160 (185)
Q Consensus        81 ~~~E~s~vD~~~r~m~~~s~Nls~~~~~~v~E~~~Y~~~penp~~~T~~~q~a~i~i~~~~~~~~~~~~iE~~~~~rf~~  160 (185)
                      |+.|.|+|||+.|+|++.|+|+||++++.|+|+++|.|||+||+ ||+|+|+|.|++++.  +..|++++|+|++++|.+
T Consensus        76 yv~E~SvVD~~~ksm~L~t~Nltf~~~l~vdE~l~Y~PhP~dps-kTv~~QEa~it~~~~--~~~ls~~~E~~~~s~fs~  152 (185)
T KOG3336|consen   76 YVREVSVVDPKRKSMTLKTCNLTFSDFLSVDERLTYSPHPEDPS-KTVLKQEAIITIKGP--LVSLSEYVEQWSASRFSQ  152 (185)
T ss_pred             EEEEEEEEcCccceEEEEecccccccceEeeeEEEecCCCCCcc-cceeeeeeEEEEecc--hhhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999996 899999999999874  446899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCC
Q 029961          161 NSVKGREVMERICKYLEAESRGIS  184 (185)
Q Consensus       161 na~kgr~~~e~vl~~l~~e~~~~~  184 (185)
                      ||.|||+|||+||+.++.|.++|+
T Consensus       153 NA~KGreg~e~Vl~~~n~e~~~i~  176 (185)
T KOG3336|consen  153 NASKGREGFEWVLKKINAEVERIS  176 (185)
T ss_pred             cccccHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999998875

>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product

Probab=100.00  E-value=1.5e-58  Score=364.62  Aligned_cols=156  Identities=42%  Similarity=0.744  Sum_probs=148.6

Q ss_pred             HHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCC-ceEEEEEEEEEeCCCCe
Q 029961           16 ERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQ-DICHCVESTVVDAQSKS   94 (185)
Q Consensus        16 e~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~-~~~~~~E~s~vD~~~r~   94 (185)
                      |+|++|||+|||||++    |||+++|||+|++|+ +|+|+|+||+.+++++|+|++||+|. ..+|++|+|+|||++|+
T Consensus         1 e~V~~a~w~kYPnp~~----~hVl~~Dvl~r~vd~-~g~l~t~Rl~~~~~~~P~w~~kl~g~~~~~~~~E~S~vD~~~k~   75 (157)
T PF04707_consen    1 ETVTSAFWRKYPNPYS----PHVLSVDVLDREVDP-DGKLHTKRLITKKNNLPRWLKKLIGVDSECYIIEESIVDPKNKT   75 (157)
T ss_pred             CHhHHHHHhhCCCCCC----CceeEEEEEEEEEcC-CCcEEEeeeeeeecCchHHHHHHhCcCceEEEEEEEEEECCCCE
Confidence            6899999999999986    799999999999998 99999999999999999999999995 67999999999999999


Q ss_pred             EEEEEEeecccceEEEEEEEEEeeCCCCCCCceEEEEEEEEEEecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029961           95 MQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICK  174 (185)
Q Consensus        95 m~~~s~Nls~~~~~~v~E~~~Y~~~penp~~~T~~~q~a~i~i~~~~~~~~~~~~iE~~~~~rf~~na~kgr~~~e~vl~  174 (185)
                      |+++|+|+||++++.|+|+|+|.|||+|| +||+|+|+|+|+++|  ++.+|+++||+|++++|.+||+|||+|||++|+
T Consensus        76 l~~~t~Nls~~~~~~v~E~~~Y~~~p~np-~~T~~~q~a~i~~~~--~~~~~~~~iE~~~~~~f~~na~kgr~~~e~vi~  152 (157)
T PF04707_consen   76 LTTKTRNLSFSSFLSVEETCVYKPHPDNP-NWTLFKQEATISIKG--SFSGFSSRIEKFSVSRFKSNAKKGREGMEWVIK  152 (157)
T ss_pred             EEEEEEEcccCceeEEEEEEEEEECCCCC-CcceEEEEEEEEEeC--chhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 699999999999865  346799999999999999999999999999999


Q ss_pred             HHhhh
Q 029961          175 YLEAE  179 (185)
Q Consensus       175 ~l~~e  179 (185)
                      +|++|
T Consensus       153 ~l~~~  157 (157)
T PF04707_consen  153 KLEEE  157 (157)
T ss_pred             HHhcC
Confidence            99875

The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].

>KOG3337 consensus Protein similar to predicted member of the intramitochondrial sorting protein family [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-50  Score=316.94  Aligned_cols=170  Identities=26%  Similarity=0.433  Sum_probs=155.7

Q ss_pred             CceEEEeeEEeeCChHHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCCceE
Q 029961            1 MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDIC   80 (185)
Q Consensus         1 Mvk~~~~~~~y~~pwe~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~   80 (185)
                      |++++...++|+++|++|.+|||.||||||+    +||+++|||+|+||+ +|.|+|+||+.|++.+|+|+.+++....+
T Consensus         1 Mvl~~~~~t~lp~s~d~VssAfw~RYPNpyS----kHVlSeDvleR~Vt~-dg~L~T~RLLvKqgRlPrWasrll~i~~v   75 (201)
T KOG3337|consen    1 MVLYDLGQTVLPSSWDQVSSAFWQRYPNPYS----KHVLSEDVLEREVTD-DGTLVTKRLLVKQGRLPRWASRLLDIQVV   75 (201)
T ss_pred             CeeEecCCCcccCcHHHHHHHHHHhCCCccc----cccccHHHHhhhcCc-ccceehhhhHHhcCCCchhhhhhccccee
Confidence            8999999999999999999999999999997    699999999999996 99999999999999999999999999999


Q ss_pred             EEEEEEEEeCCCCeEEEEEEeecccceEEEEEEEEEeeCCCCCCCceEEEEEEEEEEecccchHHHHHHHHHHHHHHHHH
Q 029961           81 HCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQ  160 (185)
Q Consensus        81 ~~~E~s~vD~~~r~m~~~s~Nls~~~~~~v~E~~~Y~~~penp~~~T~~~q~a~i~i~~~~~~~~~~~~iE~~~~~rf~~  160 (185)
                      |++|+|+|||.+++|.++|+|++|.++|.|+|.|+|..+.+|| + |+-...+.+.+   +...|+.+++++|++.+|++
T Consensus        76 ~viE~SVvdp~nqtmkTyTrNldH~~lm~v~Erc~y~~ssdns-~-ti~d~~~kfvs---s~~~G~~r~Vqe~sl~rFke  150 (201)
T KOG3337|consen   76 YVIEESVVDPVNQTMKTYTRNLDHARLMVVEERCVYCVSSDNS-G-TIEDRREKFVS---SSLFGVSRAVQEFSLARFKE  150 (201)
T ss_pred             EEeeeeecCccccceeeeeeccccceeeEEEEEEEEEecCCCC-c-chhHHHHHHhh---hhhhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999997 4 44443333331   22368999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhh
Q 029961          161 NSVKGREVMERICKYLEAES  180 (185)
Q Consensus       161 na~kgr~~~e~vl~~l~~e~  180 (185)
                      |..|+|.||+++|+++.++.
T Consensus       151 nv~ktrkGl~yvlqk~fg~a  170 (201)
T KOG3337|consen  151 NVTKTRKGLEYVLQKLFGEA  170 (201)
T ss_pred             HHHHHHhhHHHHHHHHhccc
Confidence            99999999999999998654

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=97.39  E-value=0.042  Score=43.02  Aligned_cols=142  Identities=20%  Similarity=0.195  Sum_probs=89.5

Q ss_pred             EEeeEEeeCChHHHHHHHh-----cc----CCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhh
Q 029961            5 YTQEHIYKHPWERVTSASW-----RK----FADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKII   75 (185)
Q Consensus         5 ~~~~~~y~~pwe~V~~A~w-----~K----YPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~   75 (185)
                      |+..+.|++|-+.|..+|-     +.    ...+.          ..+.+-.++. +|...+.+.-.-.-.+|..++|++
T Consensus         1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~----------~~~~~~~~~~-~g~~v~~~~~v~~~~lP~~~~k~v   69 (159)
T PF10698_consen    1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADN----------AEVESFEVDG-DGVRVTVRQTVPADKLPSAARKFV   69 (159)
T ss_pred             CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCC----------ceEEEEEEcC-CeEEEEEEEecChhhCCHHHHHhc
Confidence            6789999999999988763     22    12211          1223334553 664444333222336999999999


Q ss_pred             CCceEEEEEEEEEeCC-CCeEEEEEEeecc-cceEEEEEEEEEeeCCCCCCCceEEEEEEEEEEecccchHHHHHHHHHH
Q 029961           76 GQDICHCVESTVVDAQ-SKSMQLTTRNVSL-KKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELR  153 (185)
Q Consensus        76 g~~~~~~~E~s~vD~~-~r~m~~~s~Nls~-~~~~~v~E~~~Y~~~penp~~~T~~~q~a~i~i~~~~~~~~~~~~iE~~  153 (185)
                      |.+..+..++.+ .|. ....+- +..++. ..-+.+.=+++..|+++    .|.+.-++.++|+- .   .++.+||++
T Consensus        70 ~~~l~v~~~e~w-~~~~~g~~~g-~~~~~~~G~P~~~~G~~~L~~~~~----gt~~~~~g~v~v~V-P---lvGgkiE~~  139 (159)
T PF10698_consen   70 GGDLRVTRTETW-TPLDDGRRTG-TFTVSIPGAPVSISGTMRLRPDGG----GTRLTVEGEVKVKV-P---LVGGKIEKA  139 (159)
T ss_pred             CCCeEEEEEEEE-ecCCCCeEEE-EEEEEecCceEEEEEEEEEecCCC----CEEEEEEEEEEEEE-c---cccHHHHHH
Confidence            877666666666 653 343332 233333 45677888888888433    48888888888753 2   256799999


Q ss_pred             HHHHHHHHHHHHHH
Q 029961          154 CAEKFMQNSVKGRE  167 (185)
Q Consensus       154 ~~~rf~~na~kgr~  167 (185)
                      .+....+...+-.+
T Consensus       140 v~~~~~~~~~~e~~  153 (159)
T PF10698_consen  140 VAENLRKLLEAEQE  153 (159)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877776655433

The function is not known.

>PF02121 IP_trans: Phosphatidylinositol transfer protein; InterPro: IPR001666 Phosphatidylinositol transfer protein (PITP) is a ubiquitous cytosolic protein, thought to be involved in transport of phospholipids from their site of synthesis in the endoplasmic reticulum and Golgi to other cell membranes []

Probab=96.60  E-value=0.18  Score=42.84  Aligned_cols=76  Identities=20%  Similarity=0.228  Sum_probs=51.9

Q ss_pred             EeeeeEe--EEeCCCCe-EEEEEEEeeccCChhHHHHhhCCceEEEEEEEEE-eCCCCeEEEEEEeecccceEEEEEEEE
Q 029961           40 EVDTLNH--KLDPLSGK-LYTTRALTVHAPGPWFVRKIIGQDICHCVESTVV-DAQSKSMQLTTRNVSLKKYIEVEEKIR  115 (185)
Q Consensus        40 s~Dvl~r--~vd~~~g~-L~t~Rli~~~~~~P~w~~kl~g~~~~~~~E~s~v-D~~~r~m~~~s~Nls~~~~~~v~E~~~  115 (185)
                      ++.||..  .-|+.+|. .||++++.....+|+|++.|+....+++.|+++- .|-.++.  +|.+ -+.++.-..|+ .
T Consensus        39 GVEvl~Nep~~~~~g~~GqYT~K~y~l~sklP~~ir~l~P~~~l~v~E~aWNaYPy~~T~--~t~~-~~~kF~i~IET-~  114 (254)
T PF02121_consen   39 GVEVLKNEPYEDEPGGKGQYTHKIYHLASKLPSWIRALLPKGALYVHEKAWNAYPYCKTV--YTNP-YMDKFSIKIET-M  114 (254)
T ss_dssp             EEEEEEEEEEE-TTS-EEEEEEEEEEETTTS-HHHHTTSTTTTTEEEEEEEEETTEEEEE--EEET-TTGGEEEEEEE-E
T ss_pred             ceEEEEecccccCCCCceeeEEEEEEecccChHHHHHhCCCceEEEEEEEecccceEEEE--EecC-CCCceEEEEEE-E
Confidence            5667764  33332333 7899999999999999999998888899999987 4665543  3333 44666666777 4


Q ss_pred             EeeC
Q 029961          116 YEPH  119 (185)
Q Consensus       116 Y~~~  119 (185)
                      |.++
T Consensus       115 ~~~d  118 (254)
T PF02121_consen  115 HKPD  118 (254)
T ss_dssp             EESS
T ss_pred             EcCC
Confidence            5554

More recently, PITP has been shown to be an essential component of the polyphosphoinositide synthesis machinery and is hence required for proper signalling by epidermal growth factor and f-Met-Leu-Phe, as well as for exocytosis. The role of PITP in polyphosphoinositide synthesis may also explain its involvement in intracellular vesicular traffic [].; GO: 0006810 transport, 0005622 intracellular; PDB: 1T27_A 1KCM_A 2A1L_A 1UW5_C.

>cd08889 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs)

Probab=89.34  E-value=0.55  Score=40.07  Aligned_cols=55  Identities=18%  Similarity=0.274  Sum_probs=38.0

Q ss_pred             EeeeeEeE--EeCCCC-eEEEEEEEeeccCChhHHHHhhCCceEEEEEEEEEe-CCCCe
Q 029961           40 EVDTLNHK--LDPLSG-KLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVD-AQSKS   94 (185)
Q Consensus        40 s~Dvl~r~--vd~~~g-~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~E~s~vD-~~~r~   94 (185)
                      +|.||.-+  .|...| --+|++++.....+|+|++.+++....++.|+++=- |-.++
T Consensus        39 GVEvl~Nepy~~~~~~~GqYT~Kiyhl~sklP~wl~~~~P~~al~v~EkaWNaYPy~~T   97 (260)
T cd08889          39 GVEILENRPYTDGPGGSGQYTHKIYHIGSHIPGWFRAILPKSALRVEEEAWNAYPYTRT   97 (260)
T ss_pred             eEEEEeccccccCCCCcceeEEEEEEccccChHHHHHhCCCcceEEehhHhCCCCceEE
Confidence            67777652  332111 358999999999999999999977667777776532 44444

This subgroup includes an N-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class II phosphatidylinositol transfer protein (PITPs), PITPNM1/PITPalphaI/Nir2 (PYK2 N-terminal domain-interacting receptor2) and PITPNM2/PITPalphaII/Nir3), Drosophila RdgB, and related proteins. These are membrane associated multidomain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Ablation of the mouse gene en

>cd07815 SRPBCC_PITP Lipid-binding SRPBCC domain of Class I and Class II Phosphatidylinositol Transfer Proteins

Probab=89.22  E-value=0.54  Score=39.93  Aligned_cols=55  Identities=18%  Similarity=0.230  Sum_probs=38.8

Q ss_pred             EeeeeEeE--EeCCCC-eEEEEEEEeeccCChhHHHHhhCCceEEEEEEEEEe-CCCCe
Q 029961           40 EVDTLNHK--LDPLSG-KLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVD-AQSKS   94 (185)
Q Consensus        40 s~Dvl~r~--vd~~~g-~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~E~s~vD-~~~r~   94 (185)
                      ++.||.-+  .|...| --+|++++.....+|+|++.+++...+++.|+++=- |--++
T Consensus        37 GVEvl~Nepy~~~~~~~GqYT~Kiyhl~sklP~w~~~~~P~~al~v~EkaWNaYPy~~T   95 (251)
T cd07815          37 GVEVLKNEPYEDENGGKGQYTHKIYHLGSKLPSWLRALAPKSALTIEEKSWNAYPYCKT   95 (251)
T ss_pred             cEEEEeccCcccCCCCcceeEEEEEEccccchhHHHHhCCccceEEEhhhhCCCCceeE
Confidence            56676642  332121 358999999999999999999987778888887632 44443

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of the phosphatidylinositol transfer protein (PITP) family of lipid transfer proteins. This family of proteins includes Class 1 PITPs (PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator and related proteins), Class IIA PITPs (PITPNM1/PITPalphaI/Nir2, PITPNM2/PITPalphaII/Nir3, Drosophila RdgB, and related proteins), and Class IIB PITPs (PITPNC1/RdgBbeta and related proteins). The PITP family belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=88.80  E-value=11  Score=30.54  Aligned_cols=124  Identities=18%  Similarity=0.151  Sum_probs=69.3

Q ss_pred             eEEEeeEEeeCChHHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCCceEEE
Q 029961            3 KAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHC   82 (185)
Q Consensus         3 k~~~~~~~y~~pwe~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~   82 (185)
                      |.|..+-..+.|.+.+..+++..+.+-  +..-+++.++++|++ +|+.+-+.|.     ...+.|.|+  +-+.+.+..
T Consensus        49 k~~k~e~~i~~~~~~l~~~l~~d~e~~--~~W~~~~~~~~vl~~-id~~~~i~y~-----~~~p~p~~~--vs~RD~V~~  118 (209)
T cd08905          49 KVFRLEVVVDQPLDNLYSELVDRMEQM--GEWNPNVKEVKILQR-IGKDTLITHE-----VAAETAGNV--VGPRDFVSV  118 (209)
T ss_pred             cEEEEEEEecCCHHHHHHHHHhchhhh--ceecccchHHHHHhh-cCCCceEEEE-----EeccCCCCc--cCccceEEE
Confidence            567888899999999999998665431  113457788888887 5643333443     123334443  223344332


Q ss_pred             EEEEEE-eCCCCeEEEEEEeecc----cceEEEEEE---EEEeeCCCCCCCceEEEEEEEEEEec
Q 029961           83 VESTVV-DAQSKSMQLTTRNVSL----KKYIEVEEK---IRYEPHPDNPTGWTVCRQETSIRIKP  139 (185)
Q Consensus        83 ~E~s~v-D~~~r~m~~~s~Nls~----~~~~~v~E~---~~Y~~~penp~~~T~~~q~a~i~i~~  139 (185)
                        .... +..+-.+...+.....    .+++.++..   ...+|.+++| ++|.++..+..+.+|
T Consensus       119 --~~~~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~-~~t~v~~~~~~DpkG  180 (209)
T cd08905         119 --RCAKRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDP-SKTKLTWLLSIDLKG  180 (209)
T ss_pred             --EEEEEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCC-CceEEEEEEeecCCC
Confidence              1111 1122222222222222    345555543   4477887777 479999888887554

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs)

Probab=87.74  E-value=0.77  Score=39.14  Aligned_cols=48  Identities=17%  Similarity=0.183  Sum_probs=34.5

Q ss_pred             EeeeeEeE--EeCCCC-eEEEEEEEeeccCChhHHHHhhCCceEEEEEEEE
Q 029961           40 EVDTLNHK--LDPLSG-KLYTTRALTVHAPGPWFVRKIIGQDICHCVESTV   87 (185)
Q Consensus        40 s~Dvl~r~--vd~~~g-~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~E~s~   87 (185)
                      ++.||.-+  .|...| --+|++++.....+|+|++.++....+.+.|+++
T Consensus        37 GVEvl~Nepy~~~~~~~GqYT~Kiyhl~sklP~wir~~~P~~al~v~EkaW   87 (258)
T cd08888          37 GIEVLVNEPYEKDDGEKGQYTHKIYHLQSKVPGFVRMLAPEGSLEIHEKAW   87 (258)
T ss_pred             cEEEEeccccccCCCCcceeEEEEEEccccchhHHHHhCCCcceEEehhhh
Confidence            56677642  332111 3589999999999999999998666666777765

This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy

>KOG3668 consensus Phosphatidylinositol transfer protein [Lipid transport and metabolism; Signal transduction mechanisms]

Probab=86.97  E-value=0.9  Score=38.55  Aligned_cols=48  Identities=19%  Similarity=0.275  Sum_probs=36.2

Q ss_pred             EeeeeEe--EEeCCCCe-EEEEEEEeeccCChhHHHHhhCCceEEEEEEEE
Q 029961           40 EVDTLNH--KLDPLSGK-LYTTRALTVHAPGPWFVRKIIGQDICHCVESTV   87 (185)
Q Consensus        40 s~Dvl~r--~vd~~~g~-L~t~Rli~~~~~~P~w~~kl~g~~~~~~~E~s~   87 (185)
                      +|.||.-  ..|...|. =+|+++...+..+|+|++.|+....+.+.|+|+
T Consensus        39 GVEvl~nep~~dg~~g~GqyThKIyhl~sk~P~~~r~l~Pk~al~v~EesW   89 (269)
T KOG3668|consen   39 GVEVLKNEPYTDGPGGSGQYTHKIYHLGSKVPAWLRSLLPKGALIVHEESW   89 (269)
T ss_pred             ceEEEecCCCcCCCCCccceEEEEEEecccchHHHHHhCCccceEEeeecc
Confidence            5666653  34443222 479999999999999999999777788888876

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=85.95  E-value=16  Score=29.30  Aligned_cols=123  Identities=15%  Similarity=0.125  Sum_probs=71.7

Q ss_pred             eEEEeeEEeeCChHHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCCceEEE
Q 029961            3 KAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHC   82 (185)
Q Consensus         3 k~~~~~~~y~~pwe~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~   82 (185)
                      +.|..+-+.+.|-+.|..+++.......  ..-+++....+|++ +|..+...|.    ....++|++   +-+.+.+++
T Consensus        48 ~~~k~~~~i~~~~~~v~~~l~~d~~~~~--~Wd~~~~~~~~i~~-~d~~~~i~y~----~~~~~~~~~---vs~RDfV~~  117 (208)
T cd08868          48 KVFRLTGVLDCPAEFLYNELVLNVESLP--SWNPTVLECKIIQV-IDDNTDISYQ----VAAEAGGGL---VSPRDFVSL  117 (208)
T ss_pred             eEEEEEEEEcCCHHHHHHHHHcCccccc--eecCcccceEEEEE-ecCCcEEEEE----EecCcCCCc---ccccceEEE
Confidence            4677788999999999888876543322  13467888999998 5642222221    112222332   224465554


Q ss_pred             EEEEEEeCCCCeEEEEEEeecc------cceEEEEEE---EEEeeCCCCCCCceEEEEEEEEEEec
Q 029961           83 VESTVVDAQSKSMQLTTRNVSL------KKYIEVEEK---IRYEPHPDNPTGWTVCRQETSIRIKP  139 (185)
Q Consensus        83 ~E~s~vD~~~r~m~~~s~Nls~------~~~~~v~E~---~~Y~~~penp~~~T~~~q~a~i~i~~  139 (185)
                      .-..  ... ..+.+....+.|      .+++.+.-.   ..++|.+++| ++|.++..+.++.+|
T Consensus       118 r~~~--~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~-~~t~v~~~~~~Dp~G  179 (208)
T cd08868         118 RHWG--IRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNP-NKCNFTWLLNTDLKG  179 (208)
T ss_pred             EEEE--ecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCC-CceEEEEEEEECCCC
Confidence            3322  222 345555555555      444555543   2477888777 479999888887665

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd08890 SRPBCC_PITPNC1_like Lipid-binding SRPBCC domain of mammalian PITPNC1,and related proteins (Class IIB PITPs)

Probab=85.40  E-value=1.2  Score=37.80  Aligned_cols=46  Identities=17%  Similarity=0.346  Sum_probs=32.7

Q ss_pred             EeeeeEeE--EeCC--CCeEEEEEEEeeccCChhHHHHhhCCceEEEEEEEE
Q 029961           40 EVDTLNHK--LDPL--SGKLYTTRALTVHAPGPWFVRKIIGQDICHCVESTV   87 (185)
Q Consensus        40 s~Dvl~r~--vd~~--~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~E~s~   87 (185)
                      +|.||.-+  .|..  .|+ +|+.++.....+|+|++.+++.. .++.|+++
T Consensus        37 GVEvl~Nep~~~~~~~~Gq-YT~K~~hl~sklP~w~r~~~P~~-l~v~EkaW   86 (250)
T cd08890          37 GVEVVQNEPCEDPEHGNGQ-FTEKRVYLNSRLPSWARAVVPKI-FYVTEKAW   86 (250)
T ss_pred             cEEEEeccccccCCCCccc-eeEEEEEccccChhHHHHhCCcc-eEEehhhh
Confidence            56777653  2221  254 78888889999999999999765 66667665

This subgroup includes the N-terminal SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain of mammalian Class IIB phosphatidylinositol transfer protein (PITP), PITPNC1/RdgBbeta, and related proteins. These are metazoan proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Mammalian PITPNC1 contains an amino-terminal SRPBCC PITP-like domain and a short carboxyl-terminal domain. It is a cytoplasmic protein, and is ubiquitously

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
1kcm_A	270	PITP alpha, phosphatidylinositol transfer protein	91.08
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	83.39
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	81.96
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	81.91

>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A*

Probab=91.08  E-value=0.77  Score=38.25  Aligned_cols=77  Identities=17%  Similarity=0.227  Sum_probs=50.5

Q ss_pred             EeeeeEeE-EeCCCC--eEEEEEEEeeccCChhHHHHhhCCceEEEEEEEEEeCCCCeEEEEEEeecc-cceEEEEEEEE
Q 029961           40 EVDTLNHK-LDPLSG--KLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSL-KKYIEVEEKIR  115 (185)
Q Consensus        40 s~Dvl~r~-vd~~~g--~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~E~s~vD~~~r~m~~~s~Nls~-~~~~~v~E~~~  115 (185)
                      +|.||.-+ .+.++|  --+|++++.....+|+|++.++....+++.|+++-- ---+.+++|.+. + .++.-..|+ .
T Consensus        38 GVEvl~Nepy~~~~g~~GqYT~Kiyhl~sklP~wi~~~~P~~al~v~EkaWNa-yPy~~T~yt~~~-~~~kF~i~IET-~  114 (270)
T 1kcm_A           38 GVEVLVNEPYEKDDGEKGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWNA-YPYCRTVITNEY-MKEDFLIKIET-W  114 (270)
T ss_dssp             TEEEEEEEEEECTTSCEEEEEEEEEECGGGSCHHHHTTSCTTTTEEEEEEEEE-TTEEEEEEEETT-TGGGEEEEEEE-E
T ss_pred             eEEEEeccccccCCCCccceEEEEEEccccChHHHHHhCCccceEEEeehhcc-CcceeeEecCCC-cCcceEEEEEE-E
Confidence            46666642 321122  368999999999999999999988788899998743 223344455432 3 356566675 5


Q ss_pred             EeeC
Q 029961          116 YEPH  119 (185)
Q Consensus       116 Y~~~  119 (185)
                      |.|+
T Consensus       115 h~~d  118 (270)
T 1kcm_A          115 HKPD  118 (270)
T ss_dssp             EESS
T ss_pred             EcCC
Confidence            5554

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=83.39  E-value=12  Score=27.79  Aligned_cols=118  Identities=10%  Similarity=0.042  Sum_probs=73.7

Q ss_pred             eEEEeeEEeeCChHHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCCceEEE
Q 029961            3 KAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHC   82 (185)
Q Consensus         3 k~~~~~~~y~~pwe~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~   82 (185)
                      ..++.+...+.|-+.|-.++-..++|-..+ ++++|.++++++-  |...|.+   |.++...          |....++
T Consensus         4 ~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk-~~~~i~s~~i~eG--dgg~Gsi---r~~~~~~----------g~~~~~~   67 (158)
T 2qim_A            4 FTFQDEYTSTIAPAKLYKALVTDADIIIPK-AVETIQSVEIVEG--NGGPGTI---KKLTFIE----------GGESKYV   67 (158)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHH-HCTTEEEEEEEES--SSSTTCE---EEEEEEE----------TTEEEEE
T ss_pred             EEEEEEEEecCCHHHHHHHHhcCccchhhh-HHhhCcEEEEEec--CCCCCeE---EEEEEcC----------CCcceeE
Confidence            567889999999999999885466642111 2368889999886  3223443   3333221          3344567


Q ss_pred             EEEEE-EeCCCCeEEEEEEeecc-c-ceEEEEEEEEEeeCCCCCCCceEEEEEEEEEEec
Q 029961           83 VESTV-VDAQSKSMQLTTRNVSL-K-KYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKP  139 (185)
Q Consensus        83 ~E~s~-vD~~~r~m~~~s~Nls~-~-~~~~v~E~~~Y~~~penp~~~T~~~q~a~i~i~~  139 (185)
                      .|+-. +|..+++++-.-.-=+. . ++=+..=+....|.+++   .|.++-.+.....+
T Consensus        68 kErl~~~D~~~~~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~---gs~v~wt~~y~~~~  124 (158)
T 2qim_A           68 LHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANG---GSIGKVTIKIETKG  124 (158)
T ss_dssp             EEEEEEEEGGGTEEEEEEEEESSCCCSEEEEEEEEEEEECSTT---CEEEEEEEEEEEST
T ss_pred             EEEEEEEecCCCEEEEEEEeccCCccceEEEEEEEEEEecCCC---CEEEEEEEEEEECC
Confidence            88887 99999987655432222 1 23344445566676542   38888877777543

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=81.96  E-value=13  Score=27.40  Aligned_cols=118  Identities=10%  Similarity=0.108  Sum_probs=73.4

Q ss_pred             ceEEEeeEEeeCChHHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCCceEE
Q 029961            2 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICH   81 (185)
Q Consensus         2 vk~~~~~~~y~~pwe~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~   81 (185)
                      |..++.+...+.|-+.|-.++-..|+|-..+ ++++|.++++++-  |...|.+   |.++...          |....+
T Consensus         2 ~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk-~~~~i~s~~i~eG--~g~~Gsi---r~~~~~~----------G~~~~~   65 (155)
T 1icx_A            2 IFAFENEQSSTVAPAKLYKALTKDSDEIVPK-VIEPIQSVEIVEG--NGGPGTI---KKIIAIH----------DGHTSF   65 (155)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTTTHHHHHHH-HSTTEEEEEEEES--SSSTTCE---EEEEEES----------SSSEEE
T ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcchhcch-hhhhccEEEEEec--CCCCCeE---EEEEEec----------CCccee
Confidence            4567889999999999999985466642111 3368899999886  3223443   3333321          344456


Q ss_pred             EEEEEE-EeCCCCeEEEEEEeeccc--ceEEEEEEEEEeeCCCCCCCceEEEEEEEEEEe
Q 029961           82 CVESTV-VDAQSKSMQLTTRNVSLK--KYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIK  138 (185)
Q Consensus        82 ~~E~s~-vD~~~r~m~~~s~Nls~~--~~~~v~E~~~Y~~~penp~~~T~~~q~a~i~i~  138 (185)
                      +.|+-. +|..+++++-.-.-=+.-  ++=+..=+....|.+++   .|.++-.+.....
T Consensus        66 ~kErl~~~D~~~~~~~y~iieGd~~~~~~~~~~~~~~v~~~~~~---gs~v~w~~~y~~~  122 (155)
T 1icx_A           66 VLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDG---GSIGKINVKFHTK  122 (155)
T ss_dssp             EEEEEEEEEGGGTEEEEEEEEETTSCTTEEEEEEEEEEEECGGG---CEEEEEEEEEEES
T ss_pred             EEEEEEEEeccCCEEEEEEEecCCCccceEEEEEEEEEEecCCC---CEEEEEEEEEEEC
Confidence            778877 999999876554322221  23344445556675542   3888877777754

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=81.91  E-value=14  Score=27.46  Aligned_cols=118  Identities=8%  Similarity=0.072  Sum_probs=75.0

Q ss_pred             ceEEEeeEEeeCChHHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCCceEE
Q 029961            2 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICH   81 (185)
Q Consensus         2 vk~~~~~~~y~~pwe~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~   81 (185)
                      |..++.+...+.|-+.|-.++-..++|-..+ ++++|.++++++-  |...|.+   |.++...          |....+
T Consensus         2 ~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk-~~~~i~s~~i~eG--~g~~Gsi---r~~~~~~----------G~~~~~   65 (157)
T 1tw0_A            2 VFVFRDETSSSVAPAKLYKALTKDSDTIAQK-IDGPIQSIELVEG--NGGVGTI---KKITANE----------GDKTSF   65 (157)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHHTGGGGGGG-SCSSEEEEEEEES--SSSTTCE---EEEEEEE----------TTEEEE
T ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcchhhhh-HHhhccEEEEEeC--CCCCCeE---EEEEeeC----------CCccce
Confidence            4567889999999999999985477653222 3478899999886  3223443   3333221          334456


Q ss_pred             EEEEEE-EeCCCCeEEEEEEeeccc--ceEEEEEEEEEeeCCCCCCCceEEEEEEEEEEe
Q 029961           82 CVESTV-VDAQSKSMQLTTRNVSLK--KYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIK  138 (185)
Q Consensus        82 ~~E~s~-vD~~~r~m~~~s~Nls~~--~~~~v~E~~~Y~~~penp~~~T~~~q~a~i~i~  138 (185)
                      +.|+-. +|..+++++-.-.-=+.-  ++=+..=+....|.+++   .|.++-.+.....
T Consensus        66 ~kErl~~~D~~~~~~~y~iieGd~~~~~~~~~~~~~~v~~~~~~---gs~v~w~~~y~~~  122 (157)
T 1tw0_A           66 VLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGG---GSISKVTLKFHTK  122 (157)
T ss_dssp             EEEEEEEEETTTTEEEEEEEECTTSCTTEEEEEEEEEEEECSSS---SEEEEEEEEEEES
T ss_pred             EEEEEEEEeccCCEEEEEEEecCCCccceEEEEEEEEEEecCCC---CEEEEEEEEEEEC
Confidence            778887 999999876554332221  24344445566676542   3888877777754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1t27a_	269	Phoshatidylinositol transfer protein, PITP {Rat (R	89.44

>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Phoshatidylinositol transfer protein, PITP
domain: Phoshatidylinositol transfer protein, PITP
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.44  E-value=0.32  Score=38.57  Aligned_cols=48  Identities=19%  Similarity=0.178  Sum_probs=36.6

Q ss_pred             EeeeeEe--EEeCCCC-eEEEEEEEeeccCChhHHHHhhCCceEEEEEEEE
Q 029961           40 EVDTLNH--KLDPLSG-KLYTTRALTVHAPGPWFVRKIIGQDICHCVESTV   87 (185)
Q Consensus        40 s~Dvl~r--~vd~~~g-~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~E~s~   87 (185)
                      ++.||.-  ..|...| --+|+.++.....+|+|++.+++...+.+.|+++
T Consensus        38 GVEvl~Nepy~~~~~~~GqyT~Kiyhl~sklP~wir~~~P~~al~v~EkaW   88 (269)
T d1t27a_          38 GVEVLVNEPYEKDDGEKGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAW   88 (269)
T ss_dssp             EEEEEEEEEEECTTCCEEEEEEEEEECTTTSCHHHHTTSCTTTTCEEEEEE
T ss_pred             cEEEEEccCcccCCCCcceeEeeEEEhhhhChHHHHHhCCccccEEEEEee
Confidence            5667754  3443233 2589999999999999999999877788888874