Citrus Sinensis ID: 029968

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEERLVF
Secondary Structure (PSIPRED)
cccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccHHHHccccccEEEEEcccccccccccHHHHHHHccccEEEEEEcccccccEEEEEEEccccccccccEEEEEEEEcccccccEEEEEEcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHcHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEHHHHcccHHHHHHHcHHHHHHHHHHHccEEEEcccccccEEEEEEEcccccccccEEEEEEEEEcccccEEEEcccEEEcccccccccccccccccccccccccHcc
Coil and Loop (DISEMBL)
mvadkgkktkveeENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIrkpvydkrndIIKSIPDFWLTAFishpalgellseEDQKIFRYLSslevedfkdvksgysitfnfspnpyfednkltktftfldddgsmkITATSIKwkegmgipngvnhekkgnkrplaeerlvf
Flexible Loop (DISEMBL)
mvadkgkktkveeenaeqidselvlSIEKLQEIQDELEKINeeasekvleveqkyseirkpvydkrnDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSlevedfkdvKSGYSITfnfspnpyfedNKLTKTftfldddgsmKITATsikwkegmgipngvnhekkgnkrplaeerlvf
Low Complexity Region (SEG)
MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEERLVF
Disordered region (IsUnstruct)
******************************************************YSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGM************************
Disordered Region (DISOPRED)
**************************IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEG************************F
Disordered Region (DISEMBL)
*****************QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEERLVF
Disordered Region (DISPRO)
******************IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGM************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVADKGKKTKVEEENxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEERLVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q01105	290	Protein SET OS=Homo sapie	yes	no	0.722	0.458	0.470	2e-33
P53997	269	Protein SET OS=Drosophila	yes	no	0.864	0.591	0.426	2e-33
Q9EQU5	289	Protein SET OS=Mus muscul	yes	no	0.722	0.460	0.470	2e-33
Q63945	289	Protein SET OS=Rattus nor	no	no	0.722	0.460	0.470	2e-33
Q9H2G4	693	Testis-specific Y-encoded	no	no	0.771	0.204	0.353	9e-23
Q7TQI8	677	Testis-specific Y-encoded	no	no	0.771	0.209	0.340	2e-22
Q8N831	410	Testis-specific Y-encoded	no	no	0.788	0.353	0.340	3e-22
Q9BE64	695	Testis-specific Y-encoded	N/A	no	0.777	0.205	0.344	5e-22
Q9UJ04	414	Testis-specific Y-encoded	no	no	0.815	0.362	0.324	9e-22
Q8VD63	406	Testis-specific Y-encoded	no	no	0.815	0.369	0.324	3e-21

>sp|Q01105|SET_HUMAN Protein SET OS=Homo sapiens GN=SET PE=1 SV=3

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/134 (47%), Positives = 100/134 (74%), Gaps = 1/134 (0%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP
Sbjct: 44  AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 103

Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G
Sbjct: 104 QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESG 162

Query: 146 SMKITATSIKWKEG 159
                +T IKWK G
Sbjct: 163 DPSSKSTEIKWKSG 176

Multitasking protein, involved in apoptosis, transcription, nucleosome assembly and histone binding. Isoform 2 anti-apoptotic activity is mediated by inhibition of the GZMA-activated DNase, NME1. In the course of cytotoxic T-lymphocyte (CTL)-induced apoptosis, GZMA cleaves SET, disrupting its binding to NME1 and releasing NME1 inhibition. Isoform 1 and isoform 2 are potent inhibitors of protein phosphatase 2A. Isoform 1 and isoform 2 inhibit EP300/CREBBP and PCAF-mediated acetylation of histones (HAT) and nucleosomes, most probably by masking the accessibility of lysines of histones to the acetylases. The predominant target for inhibition is histone H4. HAT inhibition leads to silencing of HAT-dependent transcription and prevents active demethylation of DNA. Both isoforms stimulate DNA replication of the adenovirus genome complexed with viral core proteins; however, isoform 2 specific activity is higher.
Homo sapiens (taxid: 9606)

>sp|P53997|SET_DROME Protein SET OS=Drosophila melanogaster GN=Set PE=1 SV=2

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 112/164 (68%), Gaps = 5/164 (3%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           ++E++   Q+E++ +NE+ASE++L+VEQKY+++RKP Y+KR++++K IP+FW+T+FI+HP
Sbjct: 32  ALEQIDACQNEIDALNEKASEEILKVEQKYNKLRKPCYEKRSELVKRIPNFWVTSFINHP 91

Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTF----L 141
            +  +L EE+++    L+ LEVE+F+D+KSGY I F+F  NPYFE+  LTK F       
Sbjct: 92  QVSGILDEEEEECLHALNKLEVEEFEDIKSGYRINFHFDENPYFENKVLTKEFHLNSAAA 151

Query: 142 DDDGSMKI-TATSIKWKEGMGIPNGVNHEKKGNKRPLAEERLVF 184
            ++G     T+T IKWKEG  +   +  +  GNK+    E   F
Sbjct: 152 SENGDWPASTSTPIKWKEGKNLLKLLLTKPYGNKKKRNSEYKTF 195

Drosophila melanogaster (taxid: 7227)

>sp|Q9EQU5|SET_MOUSE Protein SET OS=Mus musculus GN=Set PE=1 SV=1

 Score =  141 bits (356), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/134 (47%), Positives = 100/134 (74%), Gaps = 1/134 (0%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP
Sbjct: 43  AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 102

Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G
Sbjct: 103 QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESG 161

Query: 146 SMKITATSIKWKEG 159
                +T IKWK G
Sbjct: 162 DPSSKSTEIKWKSG 175

Multitasking protein, involved in apoptosis, transcription, nucleosome assembly and histone binding. Isoform 2 anti-apoptotic activity is mediated by inhibition of the GZMA-activated DNase, NME1. In the course of cytotoxic T-lymphocyte (CTL)-induced apoptosis, GZMA cleaves SET, disrupting its binding to NME1 and releasing NME1 inhibition. Isoform 1 and isoform 2 are potent inhibitors of protein phosphatase 2A. Isoform 1 and isoform 2 inhibit EP300/CREBBP and PCAF-mediated acetylation of histones (HAT) and nucleosomes, most probably by masking the accessibility of lysines of histones to the acetylases. The predominant target for inhibition is histone H4. HAT inhibition leads to silencing of HAT-dependent transcription and prevents active demethylation of DNA. Both isoforms stimulate DNA replication of the adenovirus genome complexed with viral core proteins; however, isoform 2 specific activity is higher.

Mus musculus (taxid: 10090)

>sp|Q63945|SET_RAT Protein SET OS=Rattus norvegicus GN=Set PE=1 SV=2

 Score =  141 bits (356), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/134 (47%), Positives = 100/134 (74%), Gaps = 1/134 (0%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP
Sbjct: 43  AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 102

Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G
Sbjct: 103 QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESG 161

Query: 146 SMKITATSIKWKEG 159
                +T IKWK G
Sbjct: 162 DPSSKSTEIKWKSG 175

Multitasking protein, involved in apoptosis, transcription, nucleosome assembly and histone binding. Isoform 2 anti-apoptotic activity is mediated by inhibition of the GZMA-activated DNase, NME1. In the course of cytotoxic T-lymphocyte (CTL)-induced apoptosis, GZMA cleaves SET, disrupting its binding to NME1 and releasing NME1 inhibition. Isoform 1 and isoform 2 are potent inhibitors of protein phosphatase 2A. Isoform 1 and isoform 2 inhibit EP300/CREBBP and PCAF-mediated acetylation of histones (HAT) and nucleosomes, most probably by masking the accessibility of lysines of histones to the acetylases. The predominant target for inhibition is histone H4. HAT inhibition leads to silencing of HAT-dependent transcription and prevents active demethylation of DNA. Both isoforms stimulate DNA replication of the adenovirus genome complexed with viral core proteins; however, isoform 2 specific activity is higher.

Rattus norvegicus (taxid: 10116)

>sp|Q9H2G4|TSYL2_HUMAN Testis-specific Y-encoded-like protein 2 OS=Homo sapiens GN=TSPYL2 PE=1 SV=1

 Score =  106 bits (264), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 93/147 (63%), Gaps = 5/147 (3%)

Query: 13  EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72
           E NAE+++S L    + L++IQ +LE +N +A +  L +++K+ ++R+P  ++R+ II+ 
Sbjct: 206 ERNAERMESIL----QALEDIQLDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQH 261

Query: 73  IPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDN 132
           IP FW+ AF++HP +  L++  D+ IFRYL++L+V+D + +  GY +   F  NPYF + 
Sbjct: 262 IPGFWVKAFLNHPRISILINRRDEDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNM 321

Query: 133 KLTKTFTFLDDDGSMKITATSIKWKEG 159
            + K F   +  G +   +T I+W  G
Sbjct: 322 VIVKEFQ-RNRSGRLVSHSTPIRWHRG 347

Part of the CASK/TRB1/TSPYL2 transcriptional complex which modulates gene expression in response to neuronal synaptic activity, probably by facilitating nucleosome assembly. May inhibit cell proliferation by inducing p53-dependent CDKN1A expression.

Homo sapiens (taxid: 9606)

>sp|Q7TQI8|TSYL2_MOUSE Testis-specific Y-encoded-like protein 2 OS=Mus musculus GN=Tspyl2 PE=1 SV=1

 Score =  105 bits (262), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 93/147 (63%), Gaps = 5/147 (3%)

Query: 13  EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72
           E +A++++S L    + L+ IQ +LE +N +A +  L +++K+ ++R+P  ++R+ II+ 
Sbjct: 199 ERSAQRMESIL----QALESIQMDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQH 254

Query: 73  IPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDN 132
           IP FW+ AF++HP +  L+++ D+ IFRYL++L+V+D + +  GY +   F  NPYF + 
Sbjct: 255 IPGFWVKAFLNHPRISILINQRDRDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNM 314

Query: 133 KLTKTFTFLDDDGSMKITATSIKWKEG 159
            + K F   +  G +   +T I+W  G
Sbjct: 315 VIVKEFQ-RNRSGRLVSHSTPIRWHRG 340

Part of the CASK/TRB1/TSPYL2 transcriptional complex which modulates gene expression in response to neuronal synaptic activity, probably by facilitating nucleosome assembly. May inhibit cell proliferation by inducing p53-dependent CDKN1A expression.

Mus musculus (taxid: 10090)

>sp|Q8N831|TSYL6_HUMAN Testis-specific Y-encoded-like protein 6 OS=Homo sapiens GN=TSPYL6 PE=2 SV=1

 Score =  104 bits (260), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 86/147 (58%), Gaps = 2/147 (1%)

Query: 25  LSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISH 84
           L +  L+ IQ EL+ +N EA   +L+VE+++ +I +   ++RNDII++IP FW+TAF  H
Sbjct: 200 LHLNPLESIQLELDSVNAEADRALLQVERRFGQIHEYYLEQRNDIIRNIPGFWVTAFRHH 259

Query: 85  PALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDD 144
           P L  ++  +D ++  YL++LEV++ +  ++G    F F  NPYF +  + K +  +   
Sbjct: 260 PQLSAMIRGQDAEMLSYLTNLEVKELRHPRTGCKFKFFFQRNPYFRNKLIVKVYE-VRSF 318

Query: 145 GSMKITATSIKWKEGMGIPNGVNHEKK 171
           G +   +T I W+ G G P    H  +
Sbjct: 319 GQVVSFSTLIMWRRGHG-PQSFIHRNR 344

Homo sapiens (taxid: 9606)

>sp|Q9BE64|TSYL2_MACFA Testis-specific Y-encoded-like protein 2 OS=Macaca fascicularis GN=TSPYL2 PE=1 SV=1

 Score =  103 bits (258), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 93/148 (62%), Gaps = 5/148 (3%)

Query: 13  EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72
           + NAE+++S L    + L++IQ +LE +N +A +  L +++K+ ++R+P  ++R+ II+ 
Sbjct: 206 QRNAERMESIL----QALEDIQLDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQH 261

Query: 73  IPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDN 132
           IP FW+ AF++HP +  L++  D+ IFRYL++L+V+D + +  GY +   F  NPYF + 
Sbjct: 262 IPGFWVKAFLNHPRIPILINRRDEDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNM 321

Query: 133 KLTKTFTFLDDDGSMKITATSIKWKEGM 160
            + K F   +  G +   +T I+W  G 
Sbjct: 322 VIVKEFQ-RNRSGRLVSHSTPIRWHRGQ 348

Part of the CASK/TRB1/TSPYL2 transcriptional complex which modulates gene expression in response to neuronal synaptic activity, probably by facilitating nucleosome assembly. May inhibit cell proliferation by inducing p53-dependent CDKN1A expression.

Macaca fascicularis (taxid: 9541)

>sp|Q9UJ04|TSYL4_HUMAN Testis-specific Y-encoded-like protein 4 OS=Homo sapiens GN=TSPYL4 PE=2 SV=2

 Score =  103 bits (256), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 85/151 (56%), Gaps = 1/151 (0%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
            ++ L+ I  EL  +N +A    L++E+K+  +R+    +R+ II++IP FW+TAF +HP
Sbjct: 203 CMDSLEAIDQELSNVNAQADRAFLQLERKFGRMRRLHMQRRSFIIQNIPGFWVTAFRNHP 262

Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            L  ++S +D+ + RY+ +LEVE+ K  ++G    F F  NPYF +  L K +      G
Sbjct: 263 QLSPMISGQDEDMLRYMINLEVEELKHPRAGCKFKFIFQGNPYFRNEGLVKEYE-RRSSG 321

Query: 146 SMKITATSIKWKEGMGIPNGVNHEKKGNKRP 176
            +   +T I+W  G      ++  ++GN  P
Sbjct: 322 RVVSLSTPIRWHRGQDPQAHIHRNREGNTIP 352

Homo sapiens (taxid: 9606)

>sp|Q8VD63|TSYL4_MOUSE Testis-specific Y-encoded-like protein 4 OS=Mus musculus GN=Tspyl4 PE=1 SV=1

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 84/151 (55%), Gaps = 1/151 (0%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
            ++ L+ I  EL  +N +A    L++E+K+  +R+    +R+ II++IP FW+TAF +HP
Sbjct: 195 CMDSLEAIDQELSNVNAQADRAFLQLERKFGRMRRLHMQRRSFIIQNIPGFWVTAFRNHP 254

Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            L  ++S +D+ + RY+ +LEVE+ K  + G    F F  NPYF +  L K +      G
Sbjct: 255 QLSPMISGQDEDMMRYMINLEVEELKQPRVGCKFKFIFQSNPYFRNEGLVKEYE-RRSSG 313

Query: 146 SMKITATSIKWKEGMGIPNGVNHEKKGNKRP 176
            +   +T I+W  G      ++  ++GN  P
Sbjct: 314 RVVSLSTPIRWHRGQEPQAHIHRNREGNTIP 344

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
147765303	249	hypothetical protein VITISV_038571 [Viti	0.967	0.714	0.825	3e-80
225456743	268	PREDICTED: protein SET [Vitis vinifera]	0.967	0.664	0.825	4e-80
255541007	267	set, putative [Ricinus communis] gi|2235	0.978	0.674	0.804	9e-78
26451105	228	unknown protein [Arabidopsis thaliana] g	0.983	0.793	0.796	3e-77
6730705	255	Putative phospatase 2A inhibitor [Arabid	0.983	0.709	0.796	4e-77
18394656	256	template-activating factor I [Arabidopsi	0.983	0.707	0.796	4e-77
356516794	193	PREDICTED: protein SET-like isoform 2 [G	0.945	0.901	0.819	2e-76
356508564	261	PREDICTED: protein SET-like [Glycine max	0.945	0.666	0.813	3e-76
356516792	263	PREDICTED: protein SET-like isoform 1 [G	0.945	0.661	0.819	3e-76
297850270	252	hypothetical protein ARALYDRAFT_889308 [	0.983	0.718	0.796	4e-76

>gi|147765303|emb|CAN60194.1| hypothetical protein VITISV_038571 [Vitis vinifera]

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 151/183 (82%), Positives = 168/183 (91%), Gaps = 5/183 (2%)

Query: 1   MVADKGKKTKV----EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYS 56
           MVADKGKK K     EE N++ ID +LVLSIEKLQEIQD+LEKINEEAS+KVLEVEQKY+
Sbjct: 1   MVADKGKKLKQSEKEEEVNSDHIDGDLVLSIEKLQEIQDDLEKINEEASDKVLEVEQKYN 60

Query: 57  EIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSG 116
           EIRKP+YDKRNDIIKSIPDFWLTAF+SHPALG+LLSEEDQKIF+YLSSLEVEDFKDVKSG
Sbjct: 61  EIRKPIYDKRNDIIKSIPDFWLTAFLSHPALGDLLSEEDQKIFKYLSSLEVEDFKDVKSG 120

Query: 117 YSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRP 176
           YSITFNF+PNP+FED KL KTFTFL D+G  KI+ TSIKWK+GMGIPNGVNHEKKGNKRP
Sbjct: 121 YSITFNFNPNPFFEDTKLKKTFTFL-DEGITKISVTSIKWKDGMGIPNGVNHEKKGNKRP 179

Query: 177 LAE 179
           +A+
Sbjct: 180 IAD 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456743|ref|XP_002275632.1| PREDICTED: protein SET [Vitis vinifera] gi|297733991|emb|CBI15238.3| unnamed protein product [Vitis vinifera]

 Score =  302 bits (774), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 151/183 (82%), Positives = 168/183 (91%), Gaps = 5/183 (2%)

Query: 1   MVADKGKKTKV----EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYS 56
           MVADKGKK K     EE N++ ID +LVLSIEKLQEIQD+LEKINEEAS+KVLEVEQKY+
Sbjct: 1   MVADKGKKLKQSEKEEEVNSDHIDGDLVLSIEKLQEIQDDLEKINEEASDKVLEVEQKYN 60

Query: 57  EIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSG 116
           EIRKP+YDKRNDIIKSIPDFWLTAF+SHPALG+LLSEEDQKIF+YLSSLEVEDFKDVKSG
Sbjct: 61  EIRKPIYDKRNDIIKSIPDFWLTAFLSHPALGDLLSEEDQKIFKYLSSLEVEDFKDVKSG 120

Query: 117 YSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRP 176
           YSITFNF+PNP+FED KL KTFTFL D+G  KI+ TSIKWK+GMGIPNGVNHEKKGNKRP
Sbjct: 121 YSITFNFNPNPFFEDTKLKKTFTFL-DEGITKISVTSIKWKDGMGIPNGVNHEKKGNKRP 179

Query: 177 LAE 179
           +A+
Sbjct: 180 IAD 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541007|ref|XP_002511568.1| set, putative [Ricinus communis] gi|223550683|gb|EEF52170.1| set, putative [Ricinus communis]

 Score =  294 bits (753), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 152/189 (80%), Positives = 165/189 (87%), Gaps = 9/189 (4%)

Query: 1   MVADKGKKTKV-------EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQ 53
           MVADKGKK KV       EEEN  QID  LVLSIEKLQEIQ++LEKINEEAS+KVLEVEQ
Sbjct: 1   MVADKGKKMKVASATEKGEEEN-NQIDEALVLSIEKLQEIQEDLEKINEEASDKVLEVEQ 59

Query: 54  KYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDV 113
           KY+EIRKPVYDKRN+IIKSIPDFWLTAF+SHPAL  +LSEEDQKIF+YLSSLEVEDFKDV
Sbjct: 60  KYNEIRKPVYDKRNEIIKSIPDFWLTAFLSHPALNAILSEEDQKIFKYLSSLEVEDFKDV 119

Query: 114 KSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGN 173
           KSGYSITFNF PNPYFED KLTK+FTFL D+G+ +ITAT IKWK+GMGI NGV HEKKGN
Sbjct: 120 KSGYSITFNFEPNPYFEDTKLTKSFTFL-DEGTTEITATPIKWKQGMGIANGVTHEKKGN 178

Query: 174 KRPLAEERL 182
           KRPL EE  
Sbjct: 179 KRPLIEESF 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451105|dbj|BAC42657.1| unknown protein [Arabidopsis thaliana] gi|28950777|gb|AAO63312.1| At1g18800 [Arabidopsis thaliana]

 Score =  293 bits (749), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 145/182 (79%), Positives = 164/182 (90%), Gaps = 1/182 (0%)

Query: 1   MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60
           MV DK KK K EEEN EQID+ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+ IRK
Sbjct: 1   MVTDKSKKAKTEEENVEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRK 60

Query: 61  PVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSIT 120
           PVYDKRN+IIK+IPDFWLTAF+SHPALGELL+EEDQKIF+YLSSL+VED KDVKSGYSIT
Sbjct: 61  PVYDKRNEIIKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSIT 120

Query: 121 FNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE 180
           F+F+PNP+FED KLTKTFTFL ++G+ KITAT IKWKEG G+ NGVNHEK GNKR L EE
Sbjct: 121 FSFNPNPFFEDGKLTKTFTFL-EEGTTKITATPIKWKEGKGLANGVNHEKNGNKRALPEE 179

Query: 181 RL 182
             
Sbjct: 180 SF 181

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6730705|gb|AAF27100.1|AC011809_9 Putative phospatase 2A inhibitor [Arabidopsis thaliana]

 Score =  292 bits (748), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 145/182 (79%), Positives = 164/182 (90%), Gaps = 1/182 (0%)

Query: 1   MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60
           MV DK KK K EEEN EQID+ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+ IRK
Sbjct: 1   MVTDKSKKAKTEEENVEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRK 60

Query: 61  PVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSIT 120
           PVYDKRN+IIK+IPDFWLTAF+SHPALGELL+EEDQKIF+YLSSL+VED KDVKSGYSIT
Sbjct: 61  PVYDKRNEIIKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSIT 120

Query: 121 FNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE 180
           F+F+PNP+FED KLTKTFTFL ++G+ KITAT IKWKEG G+ NGVNHEK GNKR L EE
Sbjct: 121 FSFNPNPFFEDGKLTKTFTFL-EEGTTKITATPIKWKEGKGLANGVNHEKNGNKRALPEE 179

Query: 181 RL 182
             
Sbjct: 180 SF 181

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394656|ref|NP_564063.1| template-activating factor I [Arabidopsis thaliana] gi|21555241|gb|AAM63812.1| putative SET protein, phospatase 2A inhibitor [Arabidopsis thaliana] gi|332191644|gb|AEE29765.1| template-activating factor I [Arabidopsis thaliana]

 Score =  292 bits (748), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 145/182 (79%), Positives = 164/182 (90%), Gaps = 1/182 (0%)

Query: 1   MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60
           MV DK KK K EEEN EQID+ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+ IRK
Sbjct: 1   MVTDKSKKAKTEEENVEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRK 60

Query: 61  PVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSIT 120
           PVYDKRN+IIK+IPDFWLTAF+SHPALGELL+EEDQKIF+YLSSL+VED KDVKSGYSIT
Sbjct: 61  PVYDKRNEIIKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSIT 120

Query: 121 FNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE 180
           F+F+PNP+FED KLTKTFTFL ++G+ KITAT IKWKEG G+ NGVNHEK GNKR L EE
Sbjct: 121 FSFNPNPFFEDGKLTKTFTFL-EEGTTKITATPIKWKEGKGLANGVNHEKNGNKRALPEE 179

Query: 181 RL 182
             
Sbjct: 180 SF 181

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516794|ref|XP_003527078.1| PREDICTED: protein SET-like isoform 2 [Glycine max]

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 145/177 (81%), Positives = 162/177 (91%), Gaps = 3/177 (1%)

Query: 1   MVADKGKKTKVEE--ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEI 58
           MVAD+ KK KV E  EN ++ID ELVLSIEKLQEIQDELEKINEEAS+KVLE+EQKY+EI
Sbjct: 1   MVADRSKKPKVSEKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEI 60

Query: 59  RKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS 118
           RKPVYDKRNDIIK+IPDFWLTAF+SHPALG+LL+EEDQKIF+YLSSLEVEDFKDVKSGYS
Sbjct: 61  RKPVYDKRNDIIKAIPDFWLTAFLSHPALGDLLNEEDQKIFKYLSSLEVEDFKDVKSGYS 120

Query: 119 ITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKR 175
           ITFNF+ NPYFED KL KT+TFL ++G+ K+TAT IKWKEG GIPNGVNHEKK NKR
Sbjct: 121 ITFNFNANPYFEDTKLVKTYTFL-EEGTTKVTATPIKWKEGKGIPNGVNHEKKRNKR 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508564|ref|XP_003523025.1| PREDICTED: protein SET-like [Glycine max]

 Score =  289 bits (740), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 144/177 (81%), Positives = 162/177 (91%), Gaps = 3/177 (1%)

Query: 1   MVADKGKKTKVEE--ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEI 58
           MVAD+ KK KV +  EN ++ID ELVLSIEKLQEIQDELEKINEEAS+KVLE+EQKY+EI
Sbjct: 1   MVADRSKKPKVSDKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEI 60

Query: 59  RKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS 118
           RKPVYDKRNDII +IPDFWLTAF+SHPALG+LL+EEDQKIF+YLSSLEVEDFKDVKSGYS
Sbjct: 61  RKPVYDKRNDIINAIPDFWLTAFLSHPALGDLLNEEDQKIFKYLSSLEVEDFKDVKSGYS 120

Query: 119 ITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKR 175
           ITFNF+ NPYFED KL KT+TFL ++G+ K+TAT IKWKEG GIPNGVNHEKKGNKR
Sbjct: 121 ITFNFNANPYFEDTKLVKTYTFL-EEGTTKVTATPIKWKEGKGIPNGVNHEKKGNKR 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516792|ref|XP_003527077.1| PREDICTED: protein SET-like isoform 1 [Glycine max]

 Score =  289 bits (740), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 145/177 (81%), Positives = 162/177 (91%), Gaps = 3/177 (1%)

Query: 1   MVADKGKKTKVEE--ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEI 58
           MVAD+ KK KV E  EN ++ID ELVLSIEKLQEIQDELEKINEEAS+KVLE+EQKY+EI
Sbjct: 1   MVADRSKKPKVSEKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEI 60

Query: 59  RKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS 118
           RKPVYDKRNDIIK+IPDFWLTAF+SHPALG+LL+EEDQKIF+YLSSLEVEDFKDVKSGYS
Sbjct: 61  RKPVYDKRNDIIKAIPDFWLTAFLSHPALGDLLNEEDQKIFKYLSSLEVEDFKDVKSGYS 120

Query: 119 ITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKR 175
           ITFNF+ NPYFED KL KT+TFL ++G+ K+TAT IKWKEG GIPNGVNHEKK NKR
Sbjct: 121 ITFNFNANPYFEDTKLVKTYTFL-EEGTTKVTATPIKWKEGKGIPNGVNHEKKRNKR 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850270|ref|XP_002893016.1| hypothetical protein ARALYDRAFT_889308 [Arabidopsis lyrata subsp. lyrata] gi|297338858|gb|EFH69275.1| hypothetical protein ARALYDRAFT_889308 [Arabidopsis lyrata subsp. lyrata]

 Score =  289 bits (739), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 145/182 (79%), Positives = 163/182 (89%), Gaps = 1/182 (0%)

Query: 1   MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60
           MVADK KK K EEE+ EQID ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+ IRK
Sbjct: 1   MVADKSKKAKTEEEDVEQIDRELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRK 60

Query: 61  PVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSIT 120
           PVYDKRN+IIKSIPDFWLTAF+SHPALGELL+EEDQKIF++LSSL+VED KDVKSGYSIT
Sbjct: 61  PVYDKRNEIIKSIPDFWLTAFLSHPALGELLTEEDQKIFKFLSSLDVEDAKDVKSGYSIT 120

Query: 121 FNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE 180
           F F+PNP+FED KLTKTFTFL ++G+ KITAT IKWKEG G+ NGVNHEK GNKR L EE
Sbjct: 121 FYFNPNPFFEDGKLTKTFTFL-EEGTTKITATPIKWKEGKGLSNGVNHEKNGNKRALPEE 179

Query: 181 RL 182
             
Sbjct: 180 SF 181

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2034995	256	NRP2 "AT1G18800" [Arabidopsis	0.972	0.699	0.805	3.5e-75
TAIR|locus:2019075	264	NRP1 "AT1G74560" [Arabidopsis	0.972	0.678	0.767	6.7e-72
ZFIN|ZDB-GENE-030131-433	275	setb "SET translocation (myelo	0.913	0.610	0.419	9.2e-36
UNIPROTKB|F1RR69	289	SET "Uncharacterized protein"	0.913	0.581	0.405	3.1e-35
UNIPROTKB|F2Z4L4	277	SET "Uncharacterized protein"	0.891	0.592	0.408	6.5e-35
UNIPROTKB|Q5VXV2	268	SET "Protein SET" [Homo sapien	0.875	0.600	0.411	8.3e-35
FB|FBgn0014879	269	Set "Set" [Drosophila melanoga	0.934	0.639	0.414	1.1e-34
MGI|MGI:1860267	289	Set "SET nuclear oncogene" [Mu	0.923	0.588	0.397	1.1e-34
RGD|1307467	289	Set "SET nuclear oncogene" [Ra	0.923	0.588	0.397	1.1e-34
UNIPROTKB|Q01105	290	SET "Protein SET" [Homo sapien	0.836	0.531	0.423	1.3e-34

TAIR|locus:2034995 NRP2 "AT1G18800" [Arabidopsis thaliana (taxid:3702)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 145/180 (80%), Positives = 164/180 (91%)

Query:     1 MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60
             MV DK KK K EEEN EQID+ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+ IRK
Sbjct:     1 MVTDKSKKAKTEEENVEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRK 60

Query:    61 PVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSIT 120
             PVYDKRN+IIK+IPDFWLTAF+SHPALGELL+EEDQKIF+YLSSL+VED KDVKSGYSIT
Sbjct:    61 PVYDKRNEIIKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSIT 120

Query:   121 FNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE 180
             F+F+PNP+FED KLTKTFTFL++ G+ KITAT IKWKEG G+ NGVNHEK GNKR L EE
Sbjct:   121 FSFNPNPFFEDGKLTKTFTFLEE-GTTKITATPIKWKEGKGLANGVNHEKNGNKRALPEE 179

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0003682 "chromatin binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0008283 "cell proliferation" evidence=IGI

GO:0010311 "lateral root formation" evidence=IGI

GO:0030154 "cell differentiation" evidence=IGI

GO:0042393 "histone binding" evidence=IPI

TAIR|locus:2019075 NRP1 "AT1G74560" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 142/185 (76%), Positives = 167/185 (90%)

Query:     1 MVADKGKKTKVEE----ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYS 56
             MVADK KK+K+EE    EN EQID+ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+
Sbjct:     1 MVADKSKKSKIEEKGEEENLEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYN 60

Query:    57 EIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSG 116
              IRKPVYDKRN++I+SIP FW+TAF+SHPALG+LL+EEDQKIF+YL+SLEVED KDVKSG
Sbjct:    61 VIRKPVYDKRNEVIQSIPGFWMTAFLSHPALGDLLTEEDQKIFKYLNSLEVEDAKDVKSG 120

Query:   117 YSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHE-KKGNKR 175
             YSITF+F+ NP+FED KLTKTFTFL++ G+ KITAT IKWKEG G+PNGVNH+ KKGNKR
Sbjct:   121 YSITFHFTSNPFFEDAKLTKTFTFLEE-GTTKITATPIKWKEGKGLPNGVNHDDKKGNKR 179

Query:   176 PLAEE 180
              L EE
Sbjct:   180 ALPEE 184

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0003682 "chromatin binding" evidence=IPI

GO:0008283 "cell proliferation" evidence=IGI

GO:0010311 "lateral root formation" evidence=IGI

GO:0030154 "cell differentiation" evidence=IGI

GO:0042393 "histone binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

ZFIN|ZDB-GENE-030131-433 setb "SET translocation (myeloid leukemia-associated) B" [Danio rerio (taxid:7955)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 73/174 (41%), Positives = 114/174 (65%)

Query:    13 EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72
             +E +E+   E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  
Sbjct:    21 DETSEKEQQE---AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAK 77

Query:    73 IPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDN 132
             IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+ 
Sbjct:    78 IPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENK 137

Query:   133 KLTKTFTFLDDDGSMKITATSIKWKEGMGIPN--GVNHEKKGNKRPLAEERLVF 184
              L+K F  L++ G     +T IKWK G  +    G    K G KR   E    F
Sbjct:   138 VLSKEF-HLNESGDPSSKSTEIKWKAGKDLTKRTGQTPNKAGKKRQHEEPESFF 190

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|F1RR69 SET "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 69/170 (40%), Positives = 114/170 (67%)

Query:    12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK 71
             E  N  + + E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I 
Sbjct:    29 ETSNLPKEEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIA 88

Query:    72 SIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFED 131
              IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+
Sbjct:    89 KIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFEN 148

Query:   132 NKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNH-EKKGNKRPLAEE 180
               L+K F  L++ G     +T IKWK G  +    +  + K +++   EE
Sbjct:   149 KVLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEE 197

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|F2Z4L4 SET "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 69/169 (40%), Positives = 115/169 (68%)

Query:    13 EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72
             +E +E+   E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  
Sbjct:    21 DETSEKEQQE---AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAK 77

Query:    73 IPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDN 132
             IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+ 
Sbjct:    78 IPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENK 137

Query:   133 KLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNH-EKKGNKRPLAEE 180
              L+K F  L++ G     +T IKWK G  +    +  + K +++   EE
Sbjct:   138 VLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEE 185

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|Q5VXV2 SET "Protein SET" [Homo sapiens (taxid:9606)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 67/163 (41%), Positives = 112/163 (68%)

Query:    19 IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWL 78
             ++ E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+
Sbjct:    15 LEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWV 74

Query:    79 TAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTF 138
             T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F
Sbjct:    75 TTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF 134

Query:   139 TFLDDDGSMKITATSIKWKEGMGIPNGVNH-EKKGNKRPLAEE 180
               L++ G     +T IKWK G  +    +  + K +++   EE
Sbjct:   135 -HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEE 176

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

FB|FBgn0014879 Set "Set" [Drosophila melanogaster (taxid:7227)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 75/181 (41%), Positives = 119/181 (65%)

Query:     9 TKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRND 68
             T     N E+ +SE   ++E++   Q+E++ +NE+ASE++L+VEQKY+++RKP Y+KR++
Sbjct:    19 TSAAAGNNEE-ESE---ALEQIDACQNEIDALNEKASEEILKVEQKYNKLRKPCYEKRSE 74

Query:    69 IIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPY 128
             ++K IP+FW+T+FI+HP +  +L EE+++    L+ LEVE+F+D+KSGY I F+F  NPY
Sbjct:    75 LVKRIPNFWVTSFINHPQVSGILDEEEEECLHALNKLEVEEFEDIKSGYRINFHFDENPY 134

Query:   129 FEDNKLTKTFTF----LDDDGSMKI-TATSIKWKEGMGIPNGVNHEKKGNKRPLAEERLV 183
             FE+  LTK F        ++G     T+T IKWKEG  +   +  +  GNK+    E   
Sbjct:   135 FENKVLTKEFHLNSAAASENGDWPASTSTPIKWKEGKNLLKLLLTKPYGNKKKRNSEYKT 194

Query:   184 F 184
             F
Sbjct:   195 F 195

GO:0005634 "nucleus" evidence=ISS

GO:0030332 "cyclin binding" evidence=NAS

GO:0006334 "nucleosome assembly" evidence=IEA

MGI|MGI:1860267 Set "SET nuclear oncogene" [Mus musculus (taxid:10090)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 70/176 (39%), Positives = 119/176 (67%)

Query:    10 KVEEENAE----QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDK 65
             K+E+++A     + + E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + K
Sbjct:    23 KLEDKSASPGLPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQK 82

Query:    66 RNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSP 125
             R+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  
Sbjct:    83 RSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDE 142

Query:   126 NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNH-EKKGNKRPLAEE 180
             NPYFE+  L+K F  L++ G     +T IKWK G  +    +  + K +++   EE
Sbjct:   143 NPYFENKVLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEE 197

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

RGD|1307467 Set "SET nuclear oncogene" [Rattus norvegicus (taxid:10116)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 70/176 (39%), Positives = 119/176 (67%)

Query:    10 KVEEENAE----QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDK 65
             K+E+++A     + + E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + K
Sbjct:    23 KLEDKSASPGLPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQK 82

Query:    66 RNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSP 125
             R+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  
Sbjct:    83 RSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDE 142

Query:   126 NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNH-EKKGNKRPLAEE 180
             NPYFE+  L+K F  L++ G     +T IKWK G  +    +  + K +++   EE
Sbjct:   143 NPYFENKVLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEE 197

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0005829 "cytosol" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS

UNIPROTKB|Q01105 SET "Protein SET" [Homo sapiens (taxid:9606)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 66/156 (42%), Positives = 109/156 (69%)

Query:    26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
             +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP
Sbjct:    44 AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 103

Query:    86 ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
              +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G
Sbjct:   104 QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESG 162

Query:   146 SMKITATSIKWKEGMGIPNGVNH-EKKGNKRPLAEE 180
                  +T IKWK G  +    +  + K +++   EE
Sbjct:   163 DPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEE 198

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0006337 "nucleosome disassembly" evidence=TAS

GO:0042393 "histone binding" evidence=TAS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006913 "nucleocytoplasmic transport" evidence=NAS

GO:0035067 "negative regulation of histone acetylation" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0004864 "protein phosphatase inhibitor activity" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IGI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	NRP2	NRP2 (NAP1-RELATED PROTEIN 2); DNA binding / chromatin binding / histone binding; Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP1. Bind histones Histone2A and Histone2B and associate with chromatin in vivo. (256 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	NRP1	NRP1 (NAP1-RELATED PROTEIN 1); DNA binding / chromatin binding / histone binding; Double nrp1-1 [...] (264 aa)				•		•	•	•	0.984
	VPS9B	VPS9B; VPS9B; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- cel [...] (712 aa)					•				0.802
	AT3G23620	brix domain-containing protein; brix domain-containing protein; FUNCTIONS IN- molecular_functio [...] (314 aa)				•					0.797
	AT3G53770	late embryogenesis abundant protein-related / LEA protein-related; late embryogenesis abundant [...] (124 aa)							•		0.788
	ROC2	ROC2 (ROTAMASE CYCLOPHILIN 2); cyclosporin A binding / peptidyl-prolyl cis-trans isomerase; rot [...] (176 aa)				•					0.742
	AT1G52930	brix domain-containing protein; brix domain-containing protein; LOCATED IN- cellular_component [...] (320 aa)				•					0.739
	HDA3	HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding; Enc [...] (245 aa)				•					0.706
	AT3G57000	nucleolar essential protein-related; nucleolar essential protein-related; FUNCTIONS IN- molecul [...] (298 aa)				•			•		0.702
	AT2G37990	ribosome biogenesis regulatory protein (RRS1) family protein; ribosome biogenesis regulatory pr [...] (318 aa)				•					0.697
	IMP4	IMP4; Small nucleolar ribonucleoprotein protein involved in ribosomal RNA processing. Located i [...] (294 aa)				•					0.697

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
pfam00956	236	pfam00956, NAP, Nucleosome assembly protein (NAP)	4e-41
PTZ00007	337	PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr	1e-18
PTZ00008	185	PTZ00008, PTZ00008, (NAP-S) nucleosome assembly pr	1e-17

>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP)

 Score =  138 bits (349), Expect = 4e-41
 Identities = 62/169 (36%), Positives = 100/169 (59%), Gaps = 18/169 (10%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII--------------- 70
            +E L+ +Q EL+++  +  E+VLE+E+KY ++ +P+YDKR +II               
Sbjct: 3   RVEALKALQKELDELEAKFQEEVLELERKYDKLYQPLYDKRREIINGAREPTEVEEEEPE 62

Query: 71  -KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYF 129
            K IP FWLTA  +HP L E+++E D++  +YL+ + VE  +D K G+ + F+F+PNPYF
Sbjct: 63  EKGIPGFWLTALKNHPLLSEMITERDEEALKYLTDIRVEYLEDPKKGFKLIFHFAPNPYF 122

Query: 130 EDNKLTKTFTFLDDDGS--MKITATSIKWKEGMGIPNGVNHEKKGNKRP 176
            +  LTKT+   D+     +K   T I+WKEG  +      +K+ NK+ 
Sbjct: 123 TNEVLTKTYHLKDEGDPFELKSEGTPIEWKEGKNLTVKTVKKKQRNKKT 171

NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes. Length = 236

>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional

 Score = 81.4 bits (201), Expect = 1e-18
 Identities = 53/185 (28%), Positives = 93/185 (50%), Gaps = 16/185 (8%)

Query: 7   KKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR 66
              ++++E    +  E   +++KLQ +Q E + +  E + ++ ++  KY ++  P+YDKR
Sbjct: 23  DSIELDDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKR 82

Query: 67  NDII----------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVK-S 115
            + +            +P FWLTA  ++  LG  + E D+ I  YLS +  E  +  K  
Sbjct: 83  KEALVQNGGAEIGTPGLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQE 142

Query: 116 GYSITFNFSPNPYFEDNKLTKTFTFLDDDGS-----MKITATSIKWKEGMGIPNGVNHEK 170
           G+ + F F+PNP+F +  LTKT+     DG          AT I WK+G  +   V  +K
Sbjct: 143 GFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDEPLLSNTVATEIDWKQGKDVTKKVVTKK 202

Query: 171 KGNKR 175
           + +K+
Sbjct: 203 QRHKK 207

Length = 337

>gnl|CDD|185394 PTZ00008, PTZ00008, (NAP-S) nucleosome assembly protein-S; Provisional

 Score = 76.0 bits (187), Expect = 1e-17
 Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 4/124 (3%)

Query: 38  EKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQK 97
            +++EE +++ + +++++ E +KP+++KR +II+ IP FW      HPAL  L+  ED  
Sbjct: 1   MELDEECAKEQMNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALSYLVP-EDID 59

Query: 98  IFRYLSSLEVEDFKDVKSGYSITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIK 155
           I  +L  +++ED  D    Y IT  F      + E   L K   F  ++    +  T IK
Sbjct: 60  ILEHLKKIDLEDNLDNNGSYKITLIFDEKAKEFMEPLVLVKHVIF-KNNQEKVVEVTKIK 118

Query: 156 WKEG 159
           WKEG
Sbjct: 119 WKEG 122

Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
PTZ00007	337	(NAP-L) nucleosome assembly protein -L; Provisiona	100.0
KOG1507	358	consensus Nucleosome assembly protein NAP-1 [Chrom	100.0
PF00956	244	NAP: Nucleosome assembly protein (NAP); InterPro:	100.0
PTZ00008	185	(NAP-S) nucleosome assembly protein-S; Provisional	100.0
KOG1508	260	consensus DNA replication factor/protein phosphata	99.93
PF11629	49	Mst1_SARAH: C terminal SARAH domain of Mst1; Inter	96.52
PF07352	149	Phage_Mu_Gam: Bacteriophage Mu Gam like protein; I	93.39
COG4396	170	Mu-like prophage host-nuclease inhibitor protein G	90.94

>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional

Probab=100.00  E-value=6.8e-49  Score=338.56  Aligned_cols=173  Identities=31%  Similarity=0.605  Sum_probs=158.3

Q ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhc----------cCcchHHHHH
Q 029968           12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK----------SIPDFWLTAF   81 (184)
Q Consensus        12 ~~e~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~----------~Ip~FW~~vl   81 (184)
                      +++++..+|+.++.++.+|+.||.++..+++++++++++|+++|.++++|+|++|++||.          |||+||++||
T Consensus        28 ~~~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G~~~~e~~~~gIP~FWl~vL  107 (337)
T PTZ00007         28 DDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQNGGAEIGTPGLPQFWLTAM  107 (337)
T ss_pred             ccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCcccccccCCcccHHHHHH
Confidence            447788999999999999999999999999999999999999999999999999999999          7999999999


Q ss_pred             hcCccccccCChhhHhhhcccceeEEEEecCCC-cceEEEEEeCCCCcccCCeEEEEEEeeCCC---CC--ceeeeeccc
Q 029968           82 ISHPALGELLSEEDQKIFRYLSSLEVEDFKDVK-SGYSITFNFSPNPYFEDNKLTKTFTFLDDD---GS--MKITATSIK  155 (184)
Q Consensus        82 ~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~~~~-~~f~i~F~F~~N~yF~N~~L~K~~~~~~~~---g~--~~~~~t~I~  155 (184)
                      .||+.++.+|++.|+++|+||+||+|+++.+.. +||+|+|+|.|||||+|++|+|+|++...+   |+  ..+++|+|+
T Consensus       108 ~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~~p~~~~~~~t~I~  187 (337)
T PTZ00007        108 KNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDEPLLSNTVATEID  187 (337)
T ss_pred             HcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCCCceeecceeeece
Confidence            999999999999999999999999999887654 899999999999999999999999986523   33  356899999


Q ss_pred             ccCCCCCCCcceeccCCCCc---------cCCCCCCCC
Q 029968          156 WKEGMGIPNGVNHEKKGNKR---------PLAEERLVF  184 (184)
Q Consensus       156 Wk~gk~~t~~~~~~k~~~~~---------~~~~~sfF~  184 (184)
                      ||+|+|||+++++|||++|+         +++.+|||+
T Consensus       188 WK~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFn  225 (337)
T PTZ00007        188 WKQGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFN  225 (337)
T ss_pred             eeCCCCchhhhcccccccccCCCceeeccCCCCCChHH
Confidence            99999999999998877765         356789996

>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.4e-48  Score=327.46  Aligned_cols=171  Identities=33%  Similarity=0.633  Sum_probs=158.3

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh-----------------------
Q 029968           14 ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII-----------------------   70 (184)
Q Consensus        14 e~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI-----------------------   70 (184)
                      +|+..+|+.|+.+|.+|++||.+.+.++.++.+++++||++|..+++|+|++|.+||                       
T Consensus        66 ~~v~~Lp~~Vk~Rv~aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~~EP~eee~e~~~~~~de~~~  145 (358)
T KOG1507|consen   66 DMVENLPPAVKNRVLALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGEVEPTEEEIEWPEEIEDEGNL  145 (358)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCCccCccccccccccccccccc
Confidence            888999999999999999999999999999999999999999999999999999998                       


Q ss_pred             ------------ccCcchHHHHHhcCccccccCChhhHhhhcccceeEEEEecCCCcceEEEEEeCCCCcccCCeEEEEE
Q 029968           71 ------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTF  138 (184)
Q Consensus        71 ------------~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~~~~~~f~i~F~F~~N~yF~N~~L~K~~  138 (184)
                                  +|||+||++||+|++.++++|+++|++||+||.||++.+.+++..||+|.|||.|||||+|++|||+|
T Consensus       146 ~e~~~~~~~~d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY  225 (358)
T KOG1507|consen  146 AEDTEEAEKEDPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTY  225 (358)
T ss_pred             ccchhhhccccccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeee
Confidence                        37999999999999999999999999999999999999998877999999999999999999999999


Q ss_pred             Eee---CCCCC--------ceeeeecccccCCCCCCCcceeccCCCC---------ccCCCCCCCC
Q 029968          139 TFL---DDDGS--------MKITATSIKWKEGMGIPNGVNHEKKGNK---------RPLAEERLVF  184 (184)
Q Consensus       139 ~~~---~~~g~--------~~~~~t~I~Wk~gk~~t~~~~~~k~~~~---------~~~~~~sfF~  184 (184)
                      ++.   +.++|        ..|+||.|+|++|||+|++.++|||++|         ++++.+||||
T Consensus       226 ~l~~~~D~~~P~~~~G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFN  291 (358)
T KOG1507|consen  226 FLKSEPDEDDPFAFDGPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFN  291 (358)
T ss_pred             eeeccCCCcCCcccCCceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhh
Confidence            998   33343        3579999999999999999888876554         3477899997

>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus

Probab=100.00  E-value=1.8e-44  Score=300.64  Aligned_cols=160  Identities=40%  Similarity=0.774  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc-------------------CcchHHHHHhcC
Q 029968           24 VLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS-------------------IPDFWLTAFISH   84 (184)
Q Consensus        24 ~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~-------------------Ip~FW~~vl~n~   84 (184)
                      ++++.+|+.||.+++.++.++++++++|+.+|+++++|+|++|++||+|                   ||+||++||.||
T Consensus         1 ~~~i~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~~~~~~~~~~~~~~~~~~gIP~FW~~vl~n~   80 (244)
T PF00956_consen    1 KQRIEALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGKREPTEIEWEERQEEKPKGIPGFWLTVLKNH   80 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---HHHH-----SSSTTSTTHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccccccccccccchhhccccCCCCccccccccC
Confidence            4789999999999999999999999999999999999999999999999                   999999999999


Q ss_pred             ccccccCChhhHhhhcccceeEEEEecCCCcceEEEEEeCCCCcccCCeEEEEEEeeCCCCC------ceeeeecccccC
Q 029968           85 PALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGS------MKITATSIKWKE  158 (184)
Q Consensus        85 ~~l~~~i~~~D~~iL~~L~dI~ve~~~~~~~~f~i~F~F~~N~yF~N~~L~K~~~~~~~~g~------~~~~~t~I~Wk~  158 (184)
                      +.++++|++.|.++|+||+||+|++..++.++|+|+|+|++||||+|++|+|+|++.. .|.      .++++|+|+||+
T Consensus        81 ~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~-~~~~~~~~~~~~~~t~I~Wk~  159 (244)
T PF00956_consen   81 PLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKK-EGDEEDPDELKSESTPIDWKP  159 (244)
T ss_dssp             HHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEES-SSSTTTT-EEEEEE---EBST
T ss_pred             chhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEec-cCCCCCCCcceeeeecccccC
Confidence            9999999999999999999999999988889999999999999999999999999998 443      789999999999


Q ss_pred             CCCCCCcceeccCCCCcc---------CCCCCCCC
Q 029968          159 GMGIPNGVNHEKKGNKRP---------LAEERLVF  184 (184)
Q Consensus       159 gk~~t~~~~~~k~~~~~~---------~~~~sfF~  184 (184)
                      |+|+|.+.+.+|+++++.         .+.+|||+
T Consensus       160 gkd~t~~~~~~k~~~k~~~~~~~~~~~~~~~SFF~  194 (244)
T PF00956_consen  160 GKDLTKKEVKKKQKNKGTKQVRTITKEVPTESFFN  194 (244)
T ss_dssp             TTCTTCCCCECECCSCCCH-ECCCCCCCC--SGGG
T ss_pred             CCCccchhhhhcccccccccccceeecccCcchhh
Confidence            999999999887766542         45679985

The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....

>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional

Probab=100.00  E-value=6.6e-44  Score=286.08  Aligned_cols=144  Identities=28%  Similarity=0.524  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCcchHHHHHhcCccccccCChhhHhhhcccceeEEEEecCCCcceE
Q 029968           39 KINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS  118 (184)
Q Consensus        39 ~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~~~~~~f~  118 (184)
                      +|+.++++++++|+++|+++++|+|++|++||+|||+||++||.||+.++ +|++.|+++|+||+||+|++..++..||+
T Consensus         2 ~l~~e~~~e~~~le~ky~~~~~p~y~kR~~II~gIP~FW~~vl~n~~~~~-~I~~~D~~~L~~L~dI~ve~~~~~~~~f~   80 (185)
T PTZ00008          2 ELDEECAKEQMNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLEDNLDNNGSYK   80 (185)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCccHHHHHHHcCcccc-ccCHHHHHHHHHhCceEEEEeecCCCCEE
Confidence            47889999999999999999999999999999999999999999999999 99999999999999999997555578999


Q ss_pred             EEEEeCC--CCcccCCeEEEEEEeeCCCCCceeeeecccccCCCCCCCcceeccCCCCccCCCCCCCC
Q 029968          119 ITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEERLVF  184 (184)
Q Consensus       119 i~F~F~~--N~yF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~~~~~~~sfF~  184 (184)
                      |+|+|.+  ||||+|++|+|+|.+.. +++.++++|+|+||+|+|+|.+.+++++..+++.+..|||+
T Consensus        81 i~F~F~~~~N~yF~n~~LtK~y~~~~-~~~~~~~~t~I~Wk~gkn~t~~~~kk~~~~~~~~~~~SFF~  147 (185)
T PTZ00008         81 ITLIFDEKAKEFMEPLVLVKHVIFKN-NQEKVVEVTKIKWKEGKSPIAAAEKARSDLDDECIVWSIFE  147 (185)
T ss_pred             EEEEECCCCCCCcCCCEEEEEEEEec-CCCceeeeeecccCCCCCcceeeeeccCccccCCCCCChhh
Confidence            9999965  89999999999999987 66778899999999999999998886554556777899996

>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]

Probab=99.93  E-value=5.1e-27  Score=197.28  Aligned_cols=168  Identities=40%  Similarity=0.765  Sum_probs=153.2

Q ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCcchHHHHHhcCccccccCChh
Q 029968           15 NAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEE   94 (184)
Q Consensus        15 ~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip~FW~~vl~n~~~l~~~i~~~   94 (184)
                      .....+.+++.+++.|++||.+++.++++..++++.++++|...++|+|++|+.||+.||+||.+++.+|+.++.++.+.
T Consensus        22 ~l~~~~~~~~~~~~~l~~i~~e~~~~~~~a~~~~l~l~~~~~~~r~p~~~~r~~ii~~i~~fw~~~~~~hp~~~~~i~~~  101 (260)
T KOG1508|consen   22 HLSRRGREIEEALETLENIQHELDRMNAKAEVEVLKLEQKFNRFRRPVYEKRRELIKEIPNFWVTAFLNHPTLSEWIPEE  101 (260)
T ss_pred             ccccchhHHHhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhCchhhhhhHHHhhcccceeEEEecCCcHhhhhhhh
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhhcccceeEEEEecCCCcceEEEEEeCCCCcccCCeEEEEEEeeCCCCCceeeeecccccCCCCCCCcceeccCCCC
Q 029968           95 DQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNK  174 (184)
Q Consensus        95 D~~iL~~L~dI~ve~~~~~~~~f~i~F~F~~N~yF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~  174 (184)
                      |.+++.||.++.|+.+.+..+||++.|+|.+|+||.|..++|+|.+.. .|.+.+.+|+|.|+.|+++.........+++
T Consensus       102 ~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~-~~~~~s~~t~i~w~~~~~~~~~~~~~~~~~k  180 (260)
T KOG1508|consen  102 DEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKE-SGKPSSESTPISWKEGKPLPNPVKRGELKNK  180 (260)
T ss_pred             hhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeec-ccCcccccccccccCCCCCcccccccccccc
Confidence            999999999999999988899999999999999999999999999988 8888899999999999999988773333344


Q ss_pred             ccCCCCCCC
Q 029968          175 RPLAEERLV  183 (184)
Q Consensus       175 ~~~~~~sfF  183 (184)
                      +-....|||
T Consensus       181 ~~~~~~s~f  189 (260)
T KOG1508|consen  181 NGDGPKSFF  189 (260)
T ss_pred             cCcccccHH
Confidence            444456666

>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name

Probab=96.52  E-value=0.012  Score=37.29  Aligned_cols=38  Identities=26%  Similarity=0.553  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 029968           29 KLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR   66 (184)
Q Consensus        29 ~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R   66 (184)
                      .+.+||..+..|+.++++|+-++.+.|..+++|+.+.-
T Consensus         9 s~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldAi   46 (49)
T PF11629_consen    9 SYEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDAI   46 (49)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            35678899999999999999999999999999998753

In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.

>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []

Probab=93.39  E-value=0.32  Score=37.56  Aligned_cols=54  Identities=19%  Similarity=0.358  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCc
Q 029968           21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIP   74 (184)
Q Consensus        21 ~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip   74 (184)
                      +++-.++..+..+|.+++.++..+..++.+++..|.....|+-.+...+-..|-
T Consensus         3 ~~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~   56 (149)
T PF07352_consen    3 EEADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQ   56 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999999999999999988777654443

This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.

>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]

Probab=90.94  E-value=0.49  Score=36.58  Aligned_cols=65  Identities=18%  Similarity=0.353  Sum_probs=55.5

Q ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCcch
Q 029968           12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF   76 (184)
Q Consensus        12 ~~e~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip~F   76 (184)
                      .+....+--.+|...|..+-+||.|...|+.++..++.+++..|.-+..|+-++-..+.++|..|
T Consensus         9 ~A~~a~q~~eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~y   73 (170)
T COG4396           9 PAIEAAQDKEEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAY   73 (170)
T ss_pred             hHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            33444455578999999999999999999999999999999999999999998877777777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	184
2e50_A	225	Crystal Structure Of SetTAF-1betaINHAT Length = 225		2e-34
3kyp_A	193	Crystal Structure Of Nucleosome Assembly Protein S		5e-17
3hfd_A	276	Nucleosome Assembly Protein 1 From Plasmodium Knowl		1e-12
3gyv_A	249	Crystal Structure Of Nucleosome Assembly Protein Fr		2e-11
3fs3_A	359	Crystal Structure Of Malaria Parasite Nucleosome As		3e-11
2z2r_A	292	Nucleosome Assembly Proteins I (Nap-1, 74-365) Leng		3e-09
2ayu_A	417	The Structure Of Nucleosome Assembly Protein Sugges		3e-09

>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT Length = 225

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 62/134 (46%), Positives = 100/134 (74%), Gaps = 1/134 (0%)
Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP
Sbjct: 31  AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 90
Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  +++ G
Sbjct: 91  QVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HMNESG 149
Query: 146 SMKITATSIKWKEG 159
                +T IKWK G
Sbjct: 150 DPSSKSTEIKWKSG 163

>pdb|3KYP|A Chain A, Crystal Structure Of Nucleosome Assembly Protein S (Pfnaps) Plasmodium Falciparum Length = 193

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Query: 27  IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPA 86
           ++  ++IQ ++E+++ + + + + ++++Y E +KP+++KR++II+ IP FW      HPA
Sbjct: 2   MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPA 61
Query: 87  LGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFS--PNPYFEDNKLTKTFTFLDDD 144
           L +++  ED  I  +L  L+++D  D    Y ITF F      + E   L K  TF D++
Sbjct: 62  LSDIVP-EDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTF-DNN 119
Query: 145 GSMKITATSIKWKEGMGIPNGVNHEK 170
               +  T IKWKEG      V H +
Sbjct: 120 QEKVVECTRIKWKEGKNPIAAVTHNR 145

>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi Length = 276

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 20/170 (11%)
Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------KSIPD 75
           +++KL+  Q E      +   ++  + QKY ++  P+YDKR + +           ++P+
Sbjct: 20  TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 79
Query: 76  FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFK---DVKSGYSITFNFSPNPYFEDN 132
           FWL A  ++  +  ++ + D++I  YL+ +  +  K   + K G+ ++F+F+PNP+F ++
Sbjct: 80  FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFHFAPNPFFSNS 139
Query: 133 KLTKTFTF--LDDDGS---MKITATSIKWKEGMGI--PNGVNHEKKGNKR 175
            LTKT+    +D D     +   AT I W +   I   N V  +   N R
Sbjct: 140 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSR 189

>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From Plasmodium Falciparum Length = 249

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 20/170 (11%)
Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------KSIPD 75
           +++KL+  Q E      +   ++  + QKY ++  P+YDKR + +           ++P+
Sbjct: 10  TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 69
Query: 76  FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFK---DVKSGYSITFNFSPNPYFEDN 132
           FWL A  ++  +  ++ + D++I  YL+ +  +  K   + K G+ ++F F+ NP+F ++
Sbjct: 70  FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNS 129
Query: 133 KLTKTFTF--LDDDGS---MKITATSIKWKEGMGI--PNGVNHEKKGNKR 175
            LTKT+    +D D     +   AT I W +   I   N V  +   N R
Sbjct: 130 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSR 179

>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly Protein (Nap) Length = 359

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 20/170 (11%)
Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------KSIPD 75
           +++KL+  Q E      +   ++  + QKY ++  P+YDKR + +           ++P+
Sbjct: 54  TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 113
Query: 76  FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDF---KDVKSGYSITFNFSPNPYFEDN 132
           FWL A  ++  +  ++ + D++I  YL+ +  +     K+ K G+ ++F F+ NP+F ++
Sbjct: 114 FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNS 173
Query: 133 KLTKTFTF--LDDDGS---MKITATSIKWKEGMGI--PNGVNHEKKGNKR 175
            LTKT+    +D D     +   AT I W +   I   N V  +   N R
Sbjct: 174 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSR 223

>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365) Length = 292

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 41  NEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFR 100
            +E  E + E E    E  K   D   + +K IP FWLTA  + P + + +++ D ++  
Sbjct: 80  GQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLE 139
Query: 101 YLSSLEVEDFKDVKSGYSITFNF--SPNPYFEDNKLTKTFTF 140
           YL  + +E   D + G+ + F F  S NP+F ++ L KT+ +
Sbjct: 140 YLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFY 181

>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A Mechanism For Histone Binding And Shuttling Length = 417

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 42  EEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRY 101
           +E  E + E E    E  K   D   + +K IP FWLTA  + P + + +++ D ++  Y
Sbjct: 154 QEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEY 213
Query: 102 LSSLEVEDFKDVKSGYSITFNF--SPNPYFEDNKLTKTFTF 140
           L  + +E   D + G+ + F F  S NP+F ++ L KT+ +
Sbjct: 214 LQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFY 254

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
2e50_A	225	Protein SET; histone chaperone, inhat, PP2AI, prot	1e-41
3kyp_A	193	Pfnaps, nucleosome assembly protein; histone recog	2e-37
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	5e-31
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	2e-28
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	5e-23

>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Length = 225

 Score =  138 bits (349), Expect = 1e-41
 Identities = 67/176 (38%), Positives = 112/176 (63%), Gaps = 4/176 (2%)

Query: 3   ADKGKKTKVEEENAEQIDS---ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIR 59
           A K  K ++   +    ++   E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R
Sbjct: 5   AAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLR 64

Query: 60  KPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSI 119
           +P + KR+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I
Sbjct: 65  QPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRI 124

Query: 120 TFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKR 175
            F F  NPYFE+  L+K F   ++ G     +T IKWK G  +    +  +    R
Sbjct: 125 DFYFDENPYFENKVLSKEFHM-NESGDPSSKSTEIKWKSGKDMTKRSSQTQNKASR 179

>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Length = 193

 Score =  126 bits (318), Expect = 2e-37
 Identities = 46/156 (29%), Positives = 84/156 (53%), Gaps = 4/156 (2%)

Query: 27  IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPA 86
           ++  ++IQ ++E+++ + + + + ++++Y E +KP+++KR++II+ IP FW      HPA
Sbjct: 2   MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPA 61

Query: 87  LGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFS--PNPYFEDNKLTKTFTFLDDD 144
           L +++  ED  I  +L  L+++D  D    Y ITF F      + E   L K  TF D++
Sbjct: 62  LSDIV-PEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTF-DNN 119

Query: 145 GSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE 180
               +  T IKWKEG      V H +      + + 
Sbjct: 120 QEKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKW 155

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264

 Score =  112 bits (281), Expect = 5e-31
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 18/169 (10%)

Query: 17  EQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF 76
           ++ ++E   +   L + ++E++ I  E        E       KPVY+KR+  I  I +F
Sbjct: 5   QENENEHAKAFLGLAKCEEEVDAIEREV-------ELYRLNKMKPVYEKRDAYIDEIAEF 57

Query: 77  WLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKS-----GYSITFNFS-PNPYFE 130
           W      H +    +   D K    +  ++VE             +SITF+F      F+
Sbjct: 58  WKIVLSQHVSFANYIRASDFKYIDTIDKIKVEWLALESEMYDTRDFSITFHFHGIEGDFK 117

Query: 131 DNKLTKTFTFL-----DDDGSMKITATSIKWKEGMGIPNGVNHEKKGNK 174
           + ++TK F         +DG +      I+W +     N    + K + 
Sbjct: 118 EQQVTKVFQIKKGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSP 166

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359

 Score =  107 bits (268), Expect = 2e-28
 Identities = 43/192 (22%), Positives = 91/192 (47%), Gaps = 18/192 (9%)

Query: 3   ADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPV 62
           + K +   + ++    +  E   +++KL+  Q E      +   ++  + QKY ++  P+
Sbjct: 31  SLKYRCFYLYDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPI 90

Query: 63  YDKRNDII----------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVE---D 109
           YDKR + +           ++P+FWL A  ++  +  ++ + D++I  YL+ +  +    
Sbjct: 91  YDKRREALVGNGEAKIGTPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKK 150

Query: 110 FKDVKSGYSITFNFSPNPYFEDNKLTKTFTF-----LDDDGSMKITATSIKWKEGMGIPN 164
            K+ K G+ ++F F+ NP+F ++ LTKT+        ++   +   AT I W +   I  
Sbjct: 151 NKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILK 210

Query: 165 GVNHEKKGNKRP 176
               +K+ NK  
Sbjct: 211 KNVVKKQHNKNS 222

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score = 93.5 bits (231), Expect = 5e-23
 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 27  IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPA 86
           I   ++ + E     +E  E + E E    E  K   D   + +K IP FWLTA  + P 
Sbjct: 139 ISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPI 198

Query: 87  LGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITF--NFSPNPYFEDNKLTKTFTFLDDD 144
           + + +++ D ++  YL  + +E   D + G+ + F  + S NP+F ++ L KT+ +  + 
Sbjct: 199 VCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKEL 258

Query: 145 GSM------KITATSIKWKEGMGIPNGVNHEKKGNKRPLAEERLV 183
           G              I WK+           +K   +   + R +
Sbjct: 259 GYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTI 303

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
2e50_A	225	Protein SET; histone chaperone, inhat, PP2AI, prot	100.0
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	100.0
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	100.0
3kyp_A	193	Pfnaps, nucleosome assembly protein; histone recog	100.0
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	100.0
2jo8_A	51	Serine/threonine-protein kinase 4; C-terminal doma	95.6
2p2u_A	171	HOST-nuclease inhibitor protein GAM, putative; str	92.92

>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1

Probab=100.00  E-value=1.3e-53  Score=350.69  Aligned_cols=183  Identities=39%  Similarity=0.751  Sum_probs=150.3

Q ss_pred             CCCCccccchhccc-----cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCcc
Q 029968            1 MVADKGKKTKVEEE-----NAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPD   75 (184)
Q Consensus         1 ~~~~~~~~~~~~~e-----~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip~   75 (184)
                      |++|.+|+.|+.++     +....+++++.++++|+.||.+++.+++++++|+++|+++|+++++|+|++|++||++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~~IP~   80 (225)
T 2e50_A            1 MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPN   80 (225)
T ss_dssp             CHHHHHHHHHHHTTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             CCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhcccc
Confidence            78899999999764     4457889999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCccccccCChhhHhhhcccceeEEEEecCCCcceEEEEEeCCCCcccCCeEEEEEEeeCCCCCceeeeeccc
Q 029968           76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIK  155 (184)
Q Consensus        76 FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~~~~~~f~i~F~F~~N~yF~N~~L~K~~~~~~~~g~~~~~~t~I~  155 (184)
                      ||++||.||+.++++|++.|+++|+||+||+|+++.++..||+|+|+|.+||||+|++|+|+|++.. +|.+++++|+|+
T Consensus        81 FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~-~g~~~s~~t~I~  159 (225)
T 2e50_A           81 FWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNE-SGDPSSKSTEIK  159 (225)
T ss_dssp             HHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC--------CEEECCCC
T ss_pred             HHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecC-CCCcccCCCcce
Confidence            9999999999999999999999999999999999988789999999999999999999999999988 888899999999


Q ss_pred             ccCCCCCCCcceeccC--CCCccCC-CCCCCC
Q 029968          156 WKEGMGIPNGVNHEKK--GNKRPLA-EERLVF  184 (184)
Q Consensus       156 Wk~gk~~t~~~~~~k~--~~~~~~~-~~sfF~  184 (184)
                      ||+|+|+|+++..+++  |++|... ..|||+
T Consensus       160 Wk~gkd~t~~~~~kk~~~~~~r~~~~~~SFF~  191 (225)
T 2e50_A          160 WKSGKDMTKRSSQTQNKASRKRQHEEPESFFT  191 (225)
T ss_dssp             BCSSCCC----------------------CGG
T ss_pred             ecCCCCccchhhhhcccccCcccCCCCCCcce
Confidence            9999999999877644  4455533 689995

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A

Probab=100.00  E-value=4.7e-48  Score=333.92  Aligned_cols=173  Identities=25%  Similarity=0.508  Sum_probs=140.9

Q ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhc----------cCcchHHHHH
Q 029968           12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK----------SIPDFWLTAF   81 (184)
Q Consensus        12 ~~e~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~----------~Ip~FW~~vl   81 (184)
                      +.+++..+|+.|+++|.+|+.||.+++.+++++++++++|+++|+++++|+|++|++||+          +||+||++||
T Consensus        40 ~~~~m~sLp~~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeKR~eII~G~~e~e~~~kgIP~FWltvl  119 (359)
T 3fs3_A           40 YDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPEFWLRAL  119 (359)
T ss_dssp             -----CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSSSTTSTTHHHHHH
T ss_pred             hhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCccccccccCCCCcHHHHHH
Confidence            458889999999999999999999999999999999999999999999999999999998          8999999999


Q ss_pred             hcCccccccCChhhHhhhcccceeEEEEec---CCCcceEEEEEeCCCCcccCCeEEEEEEeeCC--CCCc---eeeeec
Q 029968           82 ISHPALGELLSEEDQKIFRYLSSLEVEDFK---DVKSGYSITFNFSPNPYFEDNKLTKTFTFLDD--DGSM---KITATS  153 (184)
Q Consensus        82 ~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~---~~~~~f~i~F~F~~N~yF~N~~L~K~~~~~~~--~g~~---~~~~t~  153 (184)
                      .||+.++.+|++.|+++|+||+||+|+++.   ++++||+|+|+|.+||||+|++|+|+|++...  +|++   .+++|+
T Consensus       120 ~Nhp~ls~~I~e~De~iL~yL~DI~Ve~l~~~~~~~~gfkI~F~F~eNpYF~N~vLtKey~l~~~~~~~dp~~~~se~t~  199 (359)
T 3fs3_A          120 RNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATV  199 (359)
T ss_dssp             HTSHHHHTTCCHHHHHHHTTEEEEEEEECC-------CEEEEEEECSCSSBCCSEEEEEEEEC--------CEEEEEECC
T ss_pred             HhchHHHHhccHhHHHHHhhcceeEEEEeccCCCCCCceEEEEEeCCCCcccCCEEEEEEEEeccCCCCCcccccceeee
Confidence            999999999999999999999999999863   56899999999999999999999999999852  2332   479999


Q ss_pred             ccccCCCCCCCcceeccCCCCcc---------CCCCCCCC
Q 029968          154 IKWKEGMGIPNGVNHEKKGNKRP---------LAEERLVF  184 (184)
Q Consensus       154 I~Wk~gk~~t~~~~~~k~~~~~~---------~~~~sfF~  184 (184)
                      |+||+|+|+|+++++||+++|++         ++.+|||+
T Consensus       200 I~WK~GKdlT~k~~~kKqr~K~t~~~R~v~k~~~~eSFFn  239 (359)
T 3fs3_A          200 IDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFH  239 (359)
T ss_dssp             CCBCTTCCTTCC----------------------CCCGGG
T ss_pred             eeEeCCCccchhhhhhhccccCCCCceeeeccCCCCCcee
Confidence            99999999999998887766542         35789995

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A

Probab=100.00  E-value=1.3e-47  Score=338.09  Aligned_cols=172  Identities=26%  Similarity=0.555  Sum_probs=156.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh----------------------
Q 029968           13 EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------------------   70 (184)
Q Consensus        13 ~e~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI----------------------   70 (184)
                      .+|+.++|+.|+++|.+|+.||.++..+++++++++++|+++|+++++|+|++|++||                      
T Consensus        82 ~~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eII~G~~ept~eE~~~~~~~~~~~~  161 (417)
T 2ayu_A           82 SGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLN  161 (417)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHTT
T ss_pred             cchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhcccccccchhh
Confidence            4789999999999999999999999999999999999999999999999999999998                      


Q ss_pred             ---------------------ccCcchHHHHHhcCccccccCChhhHhhhcccceeEEEEecCCCcceEEEEEe--CCCC
Q 029968           71 ---------------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNF--SPNP  127 (184)
Q Consensus        71 ---------------------~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~~~~~~f~i~F~F--~~N~  127 (184)
                                           +|||+||++||.||+.++.+|+++|+++|+||+||+|+++.++..||+|+|+|  .+||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve~~~d~~~gF~L~F~F~~~~Np  241 (417)
T 2ayu_A          162 ETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANP  241 (417)
T ss_dssp             CGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTCS
T ss_pred             hhhhhhhhhhhcccccccccccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEEEccCCCcceEEEEEeCCCCCc
Confidence                                 58999999999999999999999999999999999999998778899999999  9999


Q ss_pred             cccCCeEEEEEEeeCC---CCCc---eeeeecccccC-CCCCCCcceeccCCCCcc---------CCCCCCCC
Q 029968          128 YFEDNKLTKTFTFLDD---DGSM---KITATSIKWKE-GMGIPNGVNHEKKGNKRP---------LAEERLVF  184 (184)
Q Consensus       128 yF~N~~L~K~~~~~~~---~g~~---~~~~t~I~Wk~-gk~~t~~~~~~k~~~~~~---------~~~~sfF~  184 (184)
                      ||+|++|||+|++..+   +|+.   .+++|+|+||+ |+|||+++++||+++|++         ++..|||+
T Consensus       242 YF~N~vLtKtY~~~~e~~~~g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~R~v~k~v~~~SFFn  314 (417)
T 2ayu_A          242 FFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFN  314 (417)
T ss_dssp             SBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGG
T ss_pred             cccCCeEEEEEEEeccCCCCCCcccccccCcceeeecCCCCcchhhhhhcccccCCCcccccccCCCCCCcee
Confidence            9999999999999863   2554   47999999999 999999999988766532         45789996

>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}

Probab=100.00  E-value=3.7e-47  Score=305.97  Aligned_cols=156  Identities=29%  Similarity=0.596  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCcchHHHHHhcCccccccCChhhHhhhcccceeE
Q 029968           27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLE  106 (184)
Q Consensus        27 i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~  106 (184)
                      +++|++||.+++.+++++++++++|+++|+++++|+|++|++||++||+||++||.||+.++.++ +.|+++|+||+||+
T Consensus         2 ~~~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~~IP~FW~t~l~n~~~ls~i~-~~De~~L~~L~di~   80 (193)
T 3kyp_A            2 MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPALSDIV-PEDIDILNHLVKLD   80 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTHHHHTTSSSSTTSS-CHHHHTTCCCCEEC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcCCccHHHHHHHcCchHHHHH-HhhHHHHcCcceEE
Confidence            47899999999999999999999999999999999999999999999999999999999999865 79999999999999


Q ss_pred             EEEecCCCcceEEEEEeCC--CCcccCCeEEEEEEeeCCCCCceeeeecccccCCCCCCCcceeccCCCCccCCCCCCCC
Q 029968          107 VEDFKDVKSGYSITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEERLVF  184 (184)
Q Consensus       107 ve~~~~~~~~f~i~F~F~~--N~yF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~~~~~~~sfF~  184 (184)
                      |++..+++.||+|+|+|++  ||||+|++|+|+|++.. +|+.++++|+|+||+|+|+|++..+++++.+++.+..|||+
T Consensus        81 v~~~~~~~~gf~i~F~F~~n~N~yF~N~vLtK~y~~~~-~g~~~~~~t~I~Wk~gk~~t~~~~~kr~~~~~~~~~~SFF~  159 (193)
T 3kyp_A           81 LKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDN-NQEKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFE  159 (193)
T ss_dssp             CBCCSSSSCCCEEEEECSCCSSCSCSCEEEECCCCCC-----CCCCCCCCCCCSSCCCCC--------------CCCTTT
T ss_pred             EEEccCCCCceEEEEEEcCCCCccccCceEEEEEEEcC-CCCeeeccceeeeecCCCcchhhhhccccccccCCcchHhh
Confidence            9988777899999999998  89999999999999988 78888899999999999999887766665666778899996

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A

Probab=100.00  E-value=1.5e-41  Score=284.94  Aligned_cols=156  Identities=23%  Similarity=0.359  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCcchHHHHHhcCccccccCChhhHhhhcccceeEEE
Q 029968           29 KLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVE  108 (184)
Q Consensus        29 ~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve  108 (184)
                      +|..++.+++.++.++.++..+++++|+++++|+|++|++||++||+||++||.||+.++.+|++.|+++|+||+||+|+
T Consensus        10 ~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII~~IP~FWltal~n~~~l~~~I~e~De~iL~~L~dI~v~   89 (264)
T 2zd7_A           10 EHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDFKYIDTIDKIKVE   89 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHSTTGGGGSCGGGHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHcChHHHhhcCHhhHHHHHhcCceEEE
Confidence            45556666666666666777889999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee-----cCCCcceEEEEEeCC-CCcccCCeEEEEEEeeCC-CC--C--ceeeeecccccCCCCC-CCcceeccCC---C
Q 029968          109 DF-----KDVKSGYSITFNFSP-NPYFEDNKLTKTFTFLDD-DG--S--MKITATSIKWKEGMGI-PNGVNHEKKG---N  173 (184)
Q Consensus       109 ~~-----~~~~~~f~i~F~F~~-N~yF~N~~L~K~~~~~~~-~g--~--~~~~~t~I~Wk~gk~~-t~~~~~~k~~---~  173 (184)
                      ++     .++++||+|+|+|.+ ||||+|++|+|+|++... +|  +  +++++|+|+||+|+++ |...+++|+.   +
T Consensus        90 ~~~~~~~~~~~~gf~i~F~F~~~NpyF~N~vLtK~y~~~~~~dg~~~~~~~s~~t~I~WK~g~~~~~~~~~~kk~~~~~~  169 (264)
T 2zd7_A           90 WLALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGK  169 (264)
T ss_dssp             EGGGTCTTSCTTCEEEEEEECCBTTTBCCEEEEEEEEEECCSSSCCCCEEEECCCCCCCCGGGGGGCTTTCSCSSSHHHH
T ss_pred             EecccccCCCCCceEEEEEeCCCCCCccCCeEEEEEEecccCCCCCCCceeEeecccccCCCccccchhhhhhccccccc
Confidence            96     566899999999999 999999999999999873 23  3  7889999999997655 4444443321   1


Q ss_pred             Ccc-CCCCCCCC
Q 029968          174 KRP-LAEERLVF  184 (184)
Q Consensus       174 ~~~-~~~~sfF~  184 (184)
                      ++. ....|||+
T Consensus       170 ~~~r~~~~SFF~  181 (264)
T 2zd7_A          170 KKYRQGMKTIFG  181 (264)
T ss_dssp             HHHHHHHTSHHH
T ss_pred             cccCCCCCCcce
Confidence            111 22478884

>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}

Probab=95.60  E-value=0.036  Score=34.55  Aligned_cols=37  Identities=24%  Similarity=0.510  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 029968           30 LQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR   66 (184)
Q Consensus        30 L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R   66 (184)
                      +.+|+..+..++.++++|+-++...|..+++|+.+.-
T Consensus        12 ~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldAi   48 (51)
T 2jo8_A           12 VEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAI   48 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence            4567888899999999999999999999999998754

>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1

Probab=92.92  E-value=0.26  Score=38.01  Aligned_cols=58  Identities=12%  Similarity=0.262  Sum_probs=50.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCcch
Q 029968           19 IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF   76 (184)
Q Consensus        19 ~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip~F   76 (184)
                      --+++-.++..+..++.++..++..+..++.+++..|.....|+-++...+-..|-.|
T Consensus        14 ~~~~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y   71 (171)
T 2p2u_A           14 DIRQAEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATF   71 (171)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3366888999999999999999999999999999999999999998887776655554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d2e50a1	222	d.305.1.1 (A:1-222) Protein SET {Human (Homo sapie	1e-46
d2ayua1	301	d.305.1.1 (A:70-370) Nucleosome assembly protein,	1e-28

>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Length = 222

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (379), Expect = 1e-46
 Identities = 67/178 (37%), Positives = 113/178 (63%), Gaps = 4/178 (2%)

Query: 1   MVADKGKKTKVEEENAEQIDS---ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSE 57
             A K  K ++   +    ++   E   +IE + E+Q+E++++NE+ASE++L+VEQKY++
Sbjct: 3   AQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNK 62

Query: 58  IRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGY 117
           +R+P + KR+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY
Sbjct: 63  LRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGY 122

Query: 118 SITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKR 175
            I F F  NPYFE+  L+K F  +++ G     +T IKWK G  +    +  +    R
Sbjct: 123 RIDFYFDENPYFENKVLSKEF-HMNESGDPSSKSTEIKWKSGKDMTKRSSQTQNKASR 179

>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 42/208 (20%), Positives = 83/208 (39%), Gaps = 51/208 (24%)

Query: 27  IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII---------------- 70
           +  L+ +Q EL ++ +E   ++ E+E K+ +  KP++++R+ II                
Sbjct: 27  LLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQE 86

Query: 71  ---------------------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLS 103
                                      K IP FWLTA  + P + + +++ D ++  YL 
Sbjct: 87  IVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQ 146

Query: 104 SLEVEDFKDVKSGYSIT--FNFSPNPYFEDNKLTKTFTFLDDDGSM------KITATSIK 155
            + +E   D + G+ +   F+ S NP+F ++ L KT+ +  + G              I 
Sbjct: 147 DIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEIS 206

Query: 156 WKEGMGIPNGVNHEKKGNKRPLAEERLV 183
           WK+           +K   +   + R +
Sbjct: 207 WKDNAHNVTVDLEMRKQRNKTTKQVRTI 234

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d2e50a1	222	Protein SET {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ayua1	301	Nucleosome assembly protein, NAP {Baker's yeast (S	100.0

>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-52  Score=338.88  Aligned_cols=183  Identities=39%  Similarity=0.745  Sum_probs=146.3

Q ss_pred             CCCCccccchhc-----cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCcc
Q 029968            1 MVADKGKKTKVE-----EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPD   75 (184)
Q Consensus         1 ~~~~~~~~~~~~-----~e~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip~   75 (184)
                      ||||++|..+.+     +++...++.+++.++++|+.||.+++.++.++++++++++++|+++++|+|++|++||+|||+
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~iQ~e~~~l~~e~~~e~~~le~k~~~~~~ply~~R~~iI~gIP~   80 (222)
T d2e50a1           1 MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPN   80 (222)
T ss_dssp             CHHHHHHHHHHHTTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             CCCccccccchhcccccCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcc
Confidence            788665554442     277788999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCccccccCChhhHhhhcccceeEEEEecCCCcceEEEEEeCCCCcccCCeEEEEEEeeCCCCCceeeeeccc
Q 029968           76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIK  155 (184)
Q Consensus        76 FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~~~~~~f~i~F~F~~N~yF~N~~L~K~~~~~~~~g~~~~~~t~I~  155 (184)
                      ||++||.||+.++.+|++.|+++|+||+||+|++..++..+|+|+|+|.|||||+|++|+|+|+++. +|.++++||+|+
T Consensus        81 FW~~~l~n~~~l~~~I~~~D~~~L~~L~dI~v~~~~~~~~~f~i~F~F~~N~yF~N~~L~K~y~~~~-~~~~~~~~t~I~  159 (222)
T d2e50a1          81 FWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNE-SGDPSSKSTEIK  159 (222)
T ss_dssp             HHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC--------CEEECCCC
T ss_pred             HHHHHHHcCcchhhhCCHHHHHHHHhhhheeeeeccCCCCceEEEEEeCCCCcccCCeEEEEEEecC-CCCcccccccce
Confidence            9999999999999999999999999999999999998889999999999999999999999999988 888899999999


Q ss_pred             ccCCCCCCCcceeccCCCCc---cCCCCCCCC
Q 029968          156 WKEGMGIPNGVNHEKKGNKR---PLAEERLVF  184 (184)
Q Consensus       156 Wk~gk~~t~~~~~~k~~~~~---~~~~~sfF~  184 (184)
                      |++|+|+|.+..+++++.++   ..+.+|||+
T Consensus       160 Wk~gkd~t~k~~~~~~~~~~~~~~~~~~SFFn  191 (222)
T d2e50a1         160 WKSGKDMTKRSSQTQNKASRKRQHEEPESFFT  191 (222)
T ss_dssp             BCSSCCC----------------------CGG
T ss_pred             ecCCCccccccccccccCccccccCCCCChhh
Confidence            99999999988776554432   345689996

>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.1e-47  Score=320.09  Aligned_cols=173  Identities=26%  Similarity=0.543  Sum_probs=155.3

Q ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh---------------------
Q 029968           12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII---------------------   70 (184)
Q Consensus        12 ~~e~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI---------------------   70 (184)
                      +.+|+..||+.|++++.+|+.||.++.++++++++++++|+++|+++++|+|++|++||                     
T Consensus        12 ~~~~i~~Lp~~v~~rv~aLk~lq~e~~~le~~f~~e~~~LE~ky~~~~~ply~kR~~II~G~~ept~eE~~~~~~~~e~~   91 (301)
T d2ayua1          12 DSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESL   91 (301)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHT
T ss_pred             CcchHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHCCCCCCCHHHhhccccccccc
Confidence            55899999999999999999999999999999999999999999999999999999999                     


Q ss_pred             ----------------------ccCcchHHHHHhcCccccccCChhhHhhhcccceeEEEEecCCCcceEEEEEe--CCC
Q 029968           71 ----------------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNF--SPN  126 (184)
Q Consensus        71 ----------------------~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~~~~~~f~i~F~F--~~N  126 (184)
                                            +|||+||++||.||+.++.+|+++|+++|+||+||+|+++.++..||+|+|+|  +||
T Consensus        92 ~~~e~~~~~~~~~~~~~~~~~~kgIP~FWl~vl~n~~~l~~~I~e~D~~~L~~L~dI~ve~~~d~~~gf~l~F~F~f~~N  171 (301)
T d2ayua1          92 NETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSAN  171 (301)
T ss_dssp             TCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTC
T ss_pred             chhhhhhhhhhhhccccccccccCCchHHHHHHHcCHHHhhhCCHHHHHHHHhhceeEEEEccCCCCCceEEEEEecCCC
Confidence                                  48999999999999999999999999999999999999998888899999999  689


Q ss_pred             CcccCCeEEEEEEeeCC---CCC---ceeeeecccccC-CCCCCCcceeccCCCCc---------cCCCCCCCC
Q 029968          127 PYFEDNKLTKTFTFLDD---DGS---MKITATSIKWKE-GMGIPNGVNHEKKGNKR---------PLAEERLVF  184 (184)
Q Consensus       127 ~yF~N~~L~K~~~~~~~---~g~---~~~~~t~I~Wk~-gk~~t~~~~~~k~~~~~---------~~~~~sfF~  184 (184)
                      |||+|++|+|+|++...   +++   ..++||+|+||+ |+++|.+.+.+|+++|.         +++..|||+
T Consensus       172 ~yF~N~vLtK~y~~~~~~~~~~~~~~~~~eg~~I~WK~~~k~~t~~~~~kk~~~k~~~~~r~~~k~~~~~SFF~  245 (301)
T d2ayua1         172 PFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFN  245 (301)
T ss_dssp             SSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGG
T ss_pred             CCCCCCeEEEEEEEecCCCCCCCccccccCccccccccCCCcchhhhhhhcccCCCCCCCcccccCCCCCCCCc
Confidence            99999999999999762   233   247999999999 68999998888776653         244679996