Citrus Sinensis ID: 029970

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLAPELDDVSESAVNCTNNSPKDVITPPPKRKAVSDFQDDLHLGLKPCLPEKLRAETPSEESETTTSGTGSDNCCSEVAGEKKLLRLFL
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHccccHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHHcccEcccccHHHHEccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
mlrqsiqwigtpqaqaNATVFVAKFFGRAGLMSFisavpetqrpsLFQSLLYEAVGrtvnpvsgavgllwtgnWNVCQSAVERVLcggalqplpcplapelddvsesavnctnnspkdvitpppkrkavsdfqddlhlglkpclpeklraetpseesetttsgtgsdnccsevaGEKKLLRLFL
Flexible Loop (DISEMBL)
mlrqsiqwigtpqaqanATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLAPELDDVSESAVNCTnnspkdvitpppkRKAVSDFQDDLHLglkpclpeklraetpseesetttsgtgsdnccsevagekkllrlfl
Low Complexity Region (SEG)
MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLAPELDDVSESAVNCTNNSPKDVITPPPKRKAVSDFQDDLHLGLKPCLPEKLRAetpseesetttsgtgsDNCCSEVAGEKKLLRLFL
Disordered region (IsUnstruct)
*****IQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLAP*************************************************************************************
Disordered Region (DISOPRED)
*LRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPL************************************************************************************KLLRLFL
Disordered Region (DISEMBL)
MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLAPELDDVSESAVNCTNNSPKDVITPPPKRKAVSDFQDDLHLGLKPCLPEKL********************CCSEVAGEKKLLRLFL
Disordered Region (DISPRO)
MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGAL************************************************************************************GEKKLLRLFL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLAPELDDVSESAVNCTNNSPKDVITPPPKRKAVSDFQDDLHLGLKPCLPEKLRAETPSEESETTTSGTGSDNCCSEVAGEKKLLRLFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q9SN23	247	LOB domain-containing pro	yes	no	0.880	0.655	0.517	5e-41
Q9FN11	250	LOB domain-containing pro	no	no	1.0	0.736	0.442	2e-38
Q9SZE8	240	LOB domain-containing pro	no	no	1.0	0.766	0.457	2e-38
Q9ZW96	233	LOB domain-containing pro	no	no	0.527	0.416	0.556	1e-28
Q9M886	263	LOB domain-containing pro	no	no	0.467	0.326	0.616	1e-27
Q9CA30	233	LOB domain-containing pro	no	no	0.527	0.416	0.546	3e-26

>sp|Q9SN23|LBD38_ARATH LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1

 Score =  167 bits (422), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 104/201 (51%), Positives = 121/201 (60%), Gaps = 39/201 (19%)

Query: 1   MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
           +LR  IQWI +P+AQ +ATVFVAKFFGRAGLMSFISAVPE+Q P+LFQSLLYEA GRTVN
Sbjct: 18  ILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVN 77

Query: 61  PVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPL---------APELDDVSESAVNC 111
           PV+GAVGLLWTGNWNVCQ+AVE VL GG+L+P+P  L         +P  D+ SE     
Sbjct: 78  PVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASEICTEM 137

Query: 112 TNNSPKD---------------------VITPPPKRKAVSDFQ---DDLHLGLKPCLPEK 147
            N    D                         PPKRK +S  Q    +L L L P  P K
Sbjct: 138 LNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQQPSSELDLSLIPIYPIK 197

Query: 148 ---LRAETP---SEESETTTS 162
               + +TP   SEES TT S
Sbjct: 198 TLPFKEDTPSMYSEESVTTVS 218

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN11|LBD37_ARATH LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1

 Score =  158 bits (400), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/233 (44%), Positives = 129/233 (55%), Gaps = 49/233 (21%)

Query: 1   MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
           +LR  IQWI T  AQ +ATVFVAKFFGRAGLMSFISAVP++QRP+LFQSLLYEA GRTVN
Sbjct: 18  ILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVN 77

Query: 61  PVSGAVGLLWTGNWNVCQSAVERVLCGGALQPL-------------PCPLAPELDDVSES 107
           PV+GA+G+LWTGNWN+CQ+AVE VL GG+L+P+             P P + E  ++   
Sbjct: 78  PVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGFAGFPSPTSEEASEICTE 137

Query: 108 AVNCTNNSPKD------------------VITPPPKRKAVSDFQ---DDLHLGLKPCLPE 146
            +N   N   D                    + P KRK +S       +L L L P  P 
Sbjct: 138 MLNLQQNDSTDRNIYHHSRFSSSRSRSTMDSSSPTKRKRLSSEDQPSSELDLSLIPNFPI 197

Query: 147 K--------LRAETPSEESETTTSGTGSDNCCS--EVAGE-----KKLLRLFL 184
           K         R+ TPS  SE + + T +   C   +V G       KLL LF+
Sbjct: 198 KQATPSSTRRRSVTPSMNSEDSGTTTTTTAFCDKGDVYGNGGGETTKLLNLFV 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZE8|LBD39_ARATH LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1

 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/223 (45%), Positives = 131/223 (58%), Gaps = 39/223 (17%)

Query: 1   MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
           +LR  +QWI + ++Q +ATVFVAKFFGRAGLMSFIS+VPE QRP+LFQSLL+EA GRTVN
Sbjct: 18  ILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVN 77

Query: 61  PVSGAVGLLWTGNWNVCQSAVERVLCGGALQP-----------LPCPLAPEL--DDVSES 107
           PV+GAVG+LWT NW+VCQ+AVE VL GG L+P           + C  + E+   DVS +
Sbjct: 78  PVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLESPSLMISCDESSEIWHQDVSRN 137

Query: 108 AVNCTNNSP-------KDVITPPPKRKAVSDFQDDLHLGLK--------PCLP------- 145
             +    S        KD +    + K+ SD    ++ GL         P LP       
Sbjct: 138 QTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLTAPAVPVPFLPPSSFCKV 197

Query: 146 -EKLRAETPSEESETTT---SGTGSDNCCSEVAGEKKLLRLFL 184
            +  R  +PSEES TT+   +G   DN      GEKKLL LF+
Sbjct: 198 VKGDRPGSPSEESVTTSCWENGMRGDNKQKRNKGEKKLLNLFV 240

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZW96|LBD40_ARATH LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 77/97 (79%)

Query: 2   LRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNP 61
           +R  +QWI + ++QANATVF+AKF+GRAGLM+ ++  P+  RP++F+SLLYEA GR VNP
Sbjct: 21  IRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNP 80

Query: 62  VSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA 98
           + G+VGLLW+GNW++CQ+AVE V+ G  + P+ C  A
Sbjct: 81  IYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAA 117

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M886|LBD41_ARATH LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1

 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 69/86 (80%)

Query: 2   LRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNP 61
           +R  + WI +P+AQANATVF+AKF+GRAGLM+ I+A P   RP +F+SLL+EA GR VNP
Sbjct: 21  IRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNP 80

Query: 62  VSGAVGLLWTGNWNVCQSAVERVLCG 87
           + G+VGLLW+GNW +CQ AVE V+ G
Sbjct: 81  IYGSVGLLWSGNWQLCQDAVEAVMKG 106

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CA30|LBD42_ARATH LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1

 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 73/97 (75%)

Query: 2   LRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNP 61
           +R  +QWI +  +QANAT+F+AKF+GRAGL++ I + P+  RP++F+SLLYEA GR VNP
Sbjct: 21  IRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNP 80

Query: 62  VSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA 98
           V G+VGL+W+GNW  CQ+AV+ VL G  +   P P A
Sbjct: 81  VDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSA 117

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
255573139	236	LOB domain-containing protein, putative	0.978	0.762	0.572	1e-48
449448242	233	PREDICTED: LOB domain-containing protein	1.0	0.789	0.541	3e-45
224105703	207	predicted protein [Populus trichocarpa]	0.956	0.850	0.555	6e-44
224074243	238	predicted protein [Populus trichocarpa]	1.0	0.773	0.502	3e-42
357482655	231	LOB domain-containing protein [Medicago	0.978	0.779	0.513	5e-42
255568563	246	LOB domain-containing protein, putative	1.0	0.747	0.480	7e-42
337733632	239	hypothetical protein [Citrus trifoliata]	0.989	0.761	0.518	8e-41
356511939	227	PREDICTED: LOB domain-containing protein	0.989	0.801	0.476	3e-40
225438968	228	PREDICTED: LOB domain-containing protein	0.956	0.771	0.493	3e-40
297816246	236	LOB domain protein 38 [Arabidopsis lyrat	0.978	0.762	0.497	8e-40

>gi|255573139|ref|XP_002527499.1| LOB domain-containing protein, putative [Ricinus communis] gi|223533139|gb|EEF34897.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 132/208 (63%), Gaps = 28/208 (13%)

Query: 1   MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
           MLR  +Q+I  PQAQANATVFVAKFFGRAGLMSFIS+VP  QRPSLFQSLLYEAVGR VN
Sbjct: 18  MLRHCLQFIDNPQAQANATVFVAKFFGRAGLMSFISSVPYNQRPSLFQSLLYEAVGRAVN 77

Query: 61  PVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLP------CPLAPELDDVSESAVNCTNN 114
           PVSGAVGLLWTGNW+VCQ AV  VL GG ++PL         L P  D+ SE    C + 
Sbjct: 78  PVSGAVGLLWTGNWHVCQKAVMTVLRGGTVEPLQELFEDGMILGPAFDNSSE----CASF 133

Query: 115 SPKDVI------TPPPKRKAVSDFQD---------DLHLGLKPCLPEKLRAETP-SEESE 158
            P+D +      T   KRK   D  D         DL L L     EK RA TP SEESE
Sbjct: 134 RPRDNMCSGSKKTTTLKRKMSDDDNDDGAKRGKLTDLDLRLMHSTVEKRRAATPSSEESE 193

Query: 159 TTTSGTG--SDNCCSEVAGEKKLLRLFL 184
           TTT G+G  S NC  +  GE+KLL LF 
Sbjct: 194 TTTLGSGSRSTNCSLQGGGERKLLTLFF 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448242|ref|XP_004141875.1| PREDICTED: LOB domain-containing protein 38-like [Cucumis sativus] gi|449519096|ref|XP_004166571.1| PREDICTED: LOB domain-containing protein 38-like [Cucumis sativus]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/216 (54%), Positives = 144/216 (66%), Gaps = 32/216 (14%)

Query: 1   MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
           +LR  +QWI T +AQ +ATVFVAKFFGRAGLMSFISAVPE+QRPSLFQSLL+EA GRTVN
Sbjct: 18  ILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVN 77

Query: 61  PVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA---PEL--DDVSESAVNCTN-- 113
           PV+GAVGLLWTGNW+VCQ+AV+ VL GG L+P+   LA   P L  DD SE+ V CT+  
Sbjct: 78  PVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLAAGSPNLASDDTSETEVGCTDMW 137

Query: 114 -----------NSPKDVITPPPKR--KAVSDFQ-DDLHLGLKPCLPEK--LRAETP---S 154
                      ++ +  ++P  KR  +A +  Q +DL L L P  P K  LRA TP   S
Sbjct: 138 KIRDSYPNSRFSNSRSRLSPKRKRSEEASTKHQLNDLDLRLTPTFPAKSTLRAATPSMNS 197

Query: 155 EESETTT---SGTGSDNCCS---EVAGEKKLLRLFL 184
           EESETTT   SG G ++      E   ++KLL LF+
Sbjct: 198 EESETTTCFESGLGDNHHHHYPEEGVAQRKLLNLFV 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105703|ref|XP_002313905.1| predicted protein [Populus trichocarpa] gi|222850313|gb|EEE87860.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (461), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 110/198 (55%), Positives = 131/198 (66%), Gaps = 22/198 (11%)

Query: 1   MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
           +LRQ I+WI +PQAQANATVFVAKFFGRAGLMSFIS+VP++Q PSLF+SLL+EAVGRTVN
Sbjct: 18  VLRQCIEWINSPQAQANATVFVAKFFGRAGLMSFISSVPKSQGPSLFRSLLFEAVGRTVN 77

Query: 61  PVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLP----CPLAPELDDVSESAVNCTNNSP 116
           PV+GAVGLLWTGNW+VCQ AV  VL  G ++P P        PE D+VSE     +   P
Sbjct: 78  PVTGAVGLLWTGNWHVCQKAVRTVLRRGTVEPQPELEGGVFGPEFDNVSECD---SFRPP 134

Query: 117 KDVITPPP---KRKAVSD------FQDDLHLGLKPCLPEKLRAETPSEESETTTSGTGS- 166
            D ++      KRK   D       + DL L L        R +TP EESETTT  +GS 
Sbjct: 135 SDHVSSGSKTLKRKRDVDAAKRGPMRTDLDLRLM-----YQRVDTPPEESETTTLESGSG 189

Query: 167 DNCCSEVAGEKKLLRLFL 184
           +NC     GE KLLRLF+
Sbjct: 190 NNCRFHDGGEPKLLRLFV 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074243|ref|XP_002304317.1| predicted protein [Populus trichocarpa] gi|222841749|gb|EEE79296.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/221 (50%), Positives = 131/221 (59%), Gaps = 37/221 (16%)

Query: 1   MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
           +LR  +QWI +P+AQ +ATVFVAKFFGRAGLMSFISAVPE QRPSLFQSLL+EA GRTVN
Sbjct: 18  ILRPCLQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPSLFQSLLFEACGRTVN 77

Query: 61  PVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA-------PELDDVSESAVNCT- 112
           PV+GA GLLWTGNW+VCQ+AVE VL GG LQP+P  L        P  D+ SE  V CT 
Sbjct: 78  PVNGAAGLLWTGNWHVCQAAVETVLRGGTLQPMPELLTGGGGSPSPSSDEASEVEVACTD 137

Query: 113 ---------NNSPKDVITP---PPKRK------AVSDFQDDLHLGLKPC-----LPEKLR 149
                    N+ P+  I+     PKRK      AV    +DL LGL P       P K +
Sbjct: 138 IWKLQDPNPNHHPRFSISRSRLSPKRKRTEEPVAVKVQHNDLDLGLTPSFSLKGFPYKQQ 197

Query: 150 AETPSEESETTTSGTGSDNCCSEVA------GEKKLLRLFL 184
              P   S  +     ++  C + A      GE KLL LFL
Sbjct: 198 IRRPGTPSMNSAESVTTNTACFDSAGLGDEGGETKLLNLFL 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482655|ref|XP_003611614.1| LOB domain-containing protein [Medicago truncatula] gi|355512949|gb|AES94572.1| LOB domain-containing protein [Medicago truncatula] gi|388509520|gb|AFK42826.1| unknown [Medicago truncatula]

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 112/218 (51%), Positives = 132/218 (60%), Gaps = 38/218 (17%)

Query: 1   MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
           +LR  IQWI TP+AQ +ATVFVAKFFGRA LMSFIS VP  QRP+LFQSLL+EA GRTVN
Sbjct: 18  ILRPCIQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPLPQRPALFQSLLFEACGRTVN 77

Query: 61  PVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLP-----CPLAPELDDVSESAVNCTNNS 115
           PV+GAVGLLWTGNW+VCQ+AVE VL GG L+PLP       LA  +DD SE  V C  N 
Sbjct: 78  PVNGAVGLLWTGNWHVCQAAVETVLRGGTLKPLPEFLGLDALASTVDDSSEGEVTC--ND 135

Query: 116 PKDVITPPPKRKAVSD---------------FQDDLHLGLKP-------CLPEKLRAETP 153
            + +  P PK + +S                   DL+L L P       C  E  R  TP
Sbjct: 136 ARKIRDPNPKVRFMSSGGKRKRSGGEVLKLPATTDLNLRLTPQSTLTNGCRKEIRRPGTP 195

Query: 154 ---SEESETTT----SGTGSDNCCSEVAGEKKLLRLFL 184
              SEES TT     SG G DN   +  G++K+L LF+
Sbjct: 196 SMNSEESVTTVTCLESGIGEDNYVHD--GDRKVLNLFV 231

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568563|ref|XP_002525255.1| LOB domain-containing protein, putative [Ricinus communis] gi|223535413|gb|EEF37083.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 110/229 (48%), Positives = 137/229 (59%), Gaps = 45/229 (19%)

Query: 1   MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
           +LR  +QWI +P+AQ +ATVFVAKFFGRAGLMSFISAVPETQRP+LFQSLL+EA GRTVN
Sbjct: 18  ILRPCLQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPETQRPALFQSLLFEACGRTVN 77

Query: 61  PVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA-----PELDDVSESAVNCTNN- 114
           PV+GAVGLLWTGNW+VCQ+AVE VL GG L+P+P  LA     P  D+ SE+ V CT+  
Sbjct: 78  PVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELLAGSSPSPASDETSEAEVTCTDMW 137

Query: 115 -----SPKDVIT-----PPPKRKAVSDFQ-----------------DDLHLGLKPCL--- 144
                +P    +       PKRK +++ +                 +DL L L P     
Sbjct: 138 KLQDPNPHSRFSNSRSKSSPKRKRINNNETLTINKQQLPKPLYLPSNDLDLRLTPSFSPK 197

Query: 145 -----PEKLRAETPSEESE----TTTSGTGSDNCCSEVAGEKKLLRLFL 184
                PE  R  TPS  SE    TT   +G  +      G++KLL LF+
Sbjct: 198 NSPRKPELRRPGTPSMNSEESVTTTCFDSGFGDQYGNGGGDRKLLNLFV 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|337733632|gb|AEI72265.1| hypothetical protein [Citrus trifoliata]

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 115/222 (51%), Positives = 139/222 (62%), Gaps = 40/222 (18%)

Query: 1   MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
           +LR  +QWI +P++Q +ATVFVAKFFGRAGLMSFISAVPE+QRP+LFQSLLYEA GRTVN
Sbjct: 18  ILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVN 77

Query: 61  PVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA-------PELDDVSESAVNCTN 113
           PV+GAVGLLWTGNW+VCQ+AVE VL GG L+P+   L+       P  D++SE+ V CT+
Sbjct: 78  PVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVLELLSSCGGSPTPTSDELSEAEVTCTD 137

Query: 114 NSP-KDVITP--------------PPKRKAVSDF-----QDDLHLGLKPCLPEKL----- 148
            S  +D   P              P KRK V +      Q DL L L P    K+     
Sbjct: 138 MSRLQDRSFPSSHCRFSSSRSKVSPAKRKRVEESAMKLQQSDLDLRLTPRFTGKVPPDVR 197

Query: 149 -RAETP---SEESETTT---SGTGSDNCCSEVAGEKKLLRLF 183
            R  TP   SEES TTT   SG  +D+     A E+KLL LF
Sbjct: 198 RRPGTPSMNSEESGTTTCFESGL-TDHRHLNGAEERKLLNLF 238

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511939|ref|XP_003524679.1| PREDICTED: LOB domain-containing protein 39-like [Glycine max]

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/212 (47%), Positives = 128/212 (60%), Gaps = 30/212 (14%)

Query: 1   MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
           MLR  +QWI T QAQ +ATVFVAKFFGRAGLMSFIS VPE QRP+LFQSLL+EA GRTVN
Sbjct: 18  MLRPCLQWIETAQAQGHATVFVAKFFGRAGLMSFISNVPENQRPALFQSLLFEACGRTVN 77

Query: 61  PVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLAPEL------DDVSESAVNCTNN 114
           PV+GAVGLLWTGNW+VCQ+AVE VL GG L+P+P  +  +       D+ SE+ V CT+ 
Sbjct: 78  PVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELMGLDAPAAAATDEASEAEVACTDT 137

Query: 115 SPKDVITPPPKRK---------------------AVSDFQDDLHLGLKPCLPEKLRAETP 153
               +  P P  +                     A    Q +L L L P   +K+ +  P
Sbjct: 138 --WRIRNPNPNCRFTSSRSSGCGGGGKRKRSEELAKLQAQPNLDLRLTPVFSQKVESRRP 195

Query: 154 SEESETTT-SGTGSDNCCSEVAGEKKLLRLFL 184
              S T+  SGT ++N   +  G +K+L LF+
Sbjct: 196 ESPSMTSVESGTTTENRFGDQWGHRKVLNLFI 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438968|ref|XP_002284296.1| PREDICTED: LOB domain-containing protein 38 [Vitis vinifera] gi|296087336|emb|CBI33710.3| unnamed protein product [Vitis vinifera]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/219 (49%), Positives = 132/219 (60%), Gaps = 43/219 (19%)

Query: 1   MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
           +LR  +QWI + ++Q +ATVFVAKFFGRAGLMSFISAVPE QRP+LF+SLLYEA GRTVN
Sbjct: 18  ILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISAVPENQRPALFRSLLYEACGRTVN 77

Query: 61  PVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPL----APELDDVSESAVNCT---- 112
           PV+GAVGLL TGNW+VCQ+A+E VL GG L+ +P  L     PE D+ SE+ V CT    
Sbjct: 78  PVNGAVGLLGTGNWHVCQAAMETVLRGGTLRAMPELLNGVSTPECDEASEAEVTCTDMFK 137

Query: 113 ----NNSPKDVITPPPKRKAVSDFQD----DLHLGLKP---------------CLPEKLR 149
               N+S +  +   PKRK + +       DL L L P                LPE  R
Sbjct: 138 LRDPNSSSRSKV---PKRKRLEEASKVQCTDLDLRLTPGLTGKISSRGLGAMSYLPETRR 194

Query: 150 AETPSEESETTTSGTGSDNCCSEV----AGEKKLLRLFL 184
             TPS  SE + + T     C E      GE+KLL LFL
Sbjct: 195 PGTPSMNSEESVTTT-----CFETPHSPEGERKLLNLFL 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816246|ref|XP_002876006.1| LOB domain protein 38 [Arabidopsis lyrata subsp. lyrata] gi|297321844|gb|EFH52265.1| LOB domain protein 38 [Arabidopsis lyrata subsp. lyrata]

 Score =  168 bits (426), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 110/221 (49%), Positives = 128/221 (57%), Gaps = 41/221 (18%)

Query: 1   MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
           +LR  IQWI +P+AQ +ATVFVAKFFGRAGLMSFISAVPE+Q P+LFQSLLYEA GRTVN
Sbjct: 18  ILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVN 77

Query: 61  PVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPL---------APELDDVSESAVNC 111
           PV+GAVGLLWTGNWN+CQ+AVE VL GG+L+P+P  L         +P  D+ SE     
Sbjct: 78  PVNGAVGLLWTGNWNICQAAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASEICTEM 137

Query: 112 TNNSPKD-------------------VITPPPKRKAVSDFQDDLHLGLKPCLPEK---LR 149
            N    D                       PPKRK +S    +L L L P  P K    +
Sbjct: 138 LNLRKDDDSGDRNIYHHCRFSSSRSRSTASPPKRKRLS---SELDLSLIPTFPIKTVPFK 194

Query: 150 AETP---SEESETTTS---GTGSDNCCSEVAGE-KKLLRLF 183
            +TP   SEES TT S       D       GE  KLL LF
Sbjct: 195 EDTPSMYSEESVTTVSFRDNNAGDRYVRGGGGETAKLLNLF 235

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2083063	247	LBD38 "LOB domain-containing p	0.510	0.380	0.797	5.8e-40
TAIR|locus:2158247	250	LBD37 "LOB domain-containing p	0.510	0.376	0.765	2.7e-36
TAIR|locus:2120071	240	LBD39 "AT4G37540" [Arabidopsis	0.505	0.387	0.720	1.2e-35
TAIR|locus:2076829	263	LBD41 "LOB domain-containing p	0.467	0.326	0.616	6.6e-28
TAIR|locus:2019698	233	LBD40 "AT1G67100" [Arabidopsis	0.527	0.416	0.556	1e-27
TAIR|locus:2201267	233	LBD42 "AT1G68510" [Arabidopsis	0.527	0.416	0.546	2.2e-25

TAIR|locus:2083063 LBD38 "LOB domain-containing protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 75/94 (79%), Positives = 86/94 (91%)

Query:     1 MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
             +LR  IQWI +P+AQ +ATVFVAKFFGRAGLMSFISAVPE+Q P+LFQSLLYEA GRTVN
Sbjct:    18 ILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVN 77

Query:    61 PVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLP 94
             PV+GAVGLLWTGNWNVCQ+AVE VL GG+L+P+P
Sbjct:    78 PVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIP 111

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2158247 LBD37 "LOB domain-containing protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 72/94 (76%), Positives = 85/94 (90%)

Query:     1 MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
             +LR  IQWI T  AQ +ATVFVAKFFGRAGLMSFISAVP++QRP+LFQSLLYEA GRTVN
Sbjct:    18 ILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVN 77

Query:    61 PVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLP 94
             PV+GA+G+LWTGNWN+CQ+AVE VL GG+L+P+P
Sbjct:    78 PVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIP 111

GO:0005634 "nucleus" evidence=ISM

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0060776 "simple leaf morphogenesis" evidence=IMP

TAIR|locus:2120071 LBD39 "AT4G37540" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
 Identities = 67/93 (72%), Positives = 82/93 (88%)

Query:     1 MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
             +LR  +QWI + ++Q +ATVFVAKFFGRAGLMSFIS+VPE QRP+LFQSLL+EA GRTVN
Sbjct:    18 ILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVN 77

Query:    61 PVSGAVGLLWTGNWNVCQSAVERVLCGGALQPL 93
             PV+GAVG+LWT NW+VCQ+AVE VL GG L+P+
Sbjct:    78 PVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPI 110

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016126 "sterol biosynthetic process" evidence=RCA

TAIR|locus:2076829 LBD41 "LOB domain-containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 53/86 (61%), Positives = 69/86 (80%)

Query:     2 LRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNP 61
             +R  + WI +P+AQANATVF+AKF+GRAGLM+ I+A P   RP +F+SLL+EA GR VNP
Sbjct:    21 IRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNP 80

Query:    62 VSGAVGLLWTGNWNVCQSAVERVLCG 87
             + G+VGLLW+GNW +CQ AVE V+ G
Sbjct:    81 IYGSVGLLWSGNWQLCQDAVEAVMKG 106

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

TAIR|locus:2019698 LBD40 "AT1G67100" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 54/97 (55%), Positives = 77/97 (79%)

Query:     2 LRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNP 61
             +R  +QWI + ++QANATVF+AKF+GRAGLM+ ++  P+  RP++F+SLLYEA GR VNP
Sbjct:    21 IRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNP 80

Query:    62 VSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA 98
             + G+VGLLW+GNW++CQ+AVE V+ G  + P+ C  A
Sbjct:    81 IYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAA 117

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2201267 LBD42 "AT1G68510" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 53/97 (54%), Positives = 73/97 (75%)

Query:     2 LRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNP 61
             +R  +QWI +  +QANAT+F+AKF+GRAGL++ I + P+  RP++F+SLLYEA GR VNP
Sbjct:    21 IRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNP 80

Query:    62 VSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA 98
             V G+VGL+W+GNW  CQ+AV+ VL G  +   P P A
Sbjct:    81 VDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSA 117


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      184       168   0.00079  108 3  11 22  0.39    32
                                                     31  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  158 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.42u 0.08s 16.50t   Elapsed:  00:00:01
  Total cpu time:  16.42u 0.08s 16.50t   Elapsed:  00:00:01
  Start:  Mon May 20 15:35:37 2013   End:  Mon May 20 15:35:38 2013

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SN23	LBD38_ARATH	No assigned EC number	0.5174	0.8804	0.6558	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0001067101 hypothetical protein (207 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	7e-24

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score = 89.9 bits (224), Expect = 7e-24
 Identities = 27/79 (34%), Positives = 37/79 (46%)

Query: 12  PQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWT 71
           P  Q      V K FG + +   + A+P  QR    +SLLYEA  R  +PV G VG++W+
Sbjct: 23  PAEQPARFANVHKLFGASNVTKLLKALPPEQRDDAMRSLLYEADARARDPVYGCVGVIWS 82

Query: 72  GNWNVCQSAVERVLCGGAL 90
               + Q   E  L    L
Sbjct: 83  LQQQLEQLQAELALVKAQL 101

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	99.96

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=99.96  E-value=5.9e-30  Score=194.09  Aligned_cols=85  Identities=29%  Similarity=0.429  Sum_probs=80.3

Q ss_pred             CccccccccCCccccchhhhhhhhhccccchHHHhhhCCCCCchHHHHHHHHHHhccccCCcccccccccccchHHHHHH
Q 029970            1 MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSA   80 (184)
Q Consensus         1 ~lr~cl~wi~~pe~q~~at~fVhK~FG~snl~klL~~vP~~~R~~~f~SLlYEA~gRi~dPVyGcVGli~tg~w~~cq~a   80 (184)
                      +++|++     |..|.+.+.+||||||++||+|||+++|+++|+++++||+|||++|++||||||+|+||.++|++++.+
T Consensus        17 ~laPyF-----P~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i~~L~~ql~~~~   91 (101)
T PF03195_consen   17 VLAPYF-----PADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGIISQLQQQLQQLQ   91 (101)
T ss_pred             cCCCCC-----ChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHH
Confidence            467887     888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCc
Q 029970           81 VERVLCGGAL   90 (184)
Q Consensus        81 ve~Vl~g~~i   90 (184)
                      +|.++.+..|
T Consensus        92 ~el~~~~~~l  101 (101)
T PF03195_consen   92 AELALVRAQL  101 (101)
T ss_pred             HHHHHHHccC
Confidence            9999877654

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00