Citrus Sinensis ID: 029973

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKPPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESEKEVR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEcccEEEEEEEccccEEEEEcccEEccccEEEEcccEEEEccEEEEccccccccccHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHcccccHccHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccccccccccccccccccHHHHccccccEEEEEEcccccccEEEEEEEccccEEEEEccEEEcccccEEcccEEEEEEEEEEEccccccccccHHHHHHHHHccccccHHHHHccccccc
Coil and Loop (DISEMBL)
mapkqgkprvsrnpelirgigkfsrskmyhkRGLWAIKaknggvfprhdpkpkaaapaekppkfypaddvkkplvnkrkpkptklrasitpGTVLIILAGRFKGKRVVFLKqlpsglllvsgpfkingvplrrvnqsyvigtstkvdisgvnvdkfddKYFAKEVERKkkkgenefFESEKEVR
Flexible Loop (DISEMBL)
mapkqgkprvsrnpelirgigkfsrskmyhkRGLWAIKAKNGGVFPRHDPKPKaaapaekppkfypaddvkkplvnkrkpkptklrasitpgtVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIgtstkvdisgvnvdkfdDKYFAKEverkkkkgeneffesekevr
Low Complexity Region (SEG)
MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDpkpkaaapaekppkFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESEKEVR
Disordered region (IsUnstruct)
****************IRGIGKFSRSKMYHKRGLWAIKAKNGGV*******************************************SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFA**********************
Disordered Region (DISOPRED)
************NPELIRGIGKFSRSKMYHKRGLWAI**********************KPPKFYPADD******************SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKY************************
Disordered Region (DISEMBL)
***********RNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRH************PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKG************
Disordered Region (DISPRO)
**********SRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFP****KPKAAAPAEKPPKFYPADDVKKPL*******P*KLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVER*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKPPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFxxxxxxxxxxxxxxxxxxxxxVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
P34091	234	60S ribosomal protein L6	N/A	no	0.983	0.773	0.839	3e-79
Q9FZ76	233	60S ribosomal protein L6-	yes	no	0.864	0.682	0.849	8e-76
Q9C9C5	233	60S ribosomal protein L6-	no	no	0.902	0.712	0.831	2e-75
Q9C9C6	233	60S ribosomal protein L6-	no	no	0.902	0.712	0.819	4e-74
Q6QMZ4	288	60S ribosomal protein L6	N/A	no	0.961	0.614	0.487	8e-40
Q2YGT9	284	60S ribosomal protein L6	yes	no	0.951	0.616	0.472	1e-39
Q58DQ3	287	60S ribosomal protein L6	yes	no	0.951	0.609	0.472	3e-39
Q02878	288	60S ribosomal protein L6	yes	no	0.940	0.600	0.476	2e-37
P47911	296	60S ribosomal protein L6	yes	no	0.891	0.554	0.463	3e-37
P21533	298	60S ribosomal protein L6	yes	no	0.902	0.557	0.458	5e-37

>sp|P34091|RL6_MESCR 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1

 Score =  293 bits (751), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 152/181 (83%), Positives = 165/181 (91%)

Query: 2   APKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKP 61
           A KQ KP VSRNPEL+RGIGK+SRSKMYHKRGLWAIKAKNGGVFP+H PK   +   EKP
Sbjct: 3   AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKP 62

Query: 62  PKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVS 121
           PKFYPADDVKKPL+NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+
Sbjct: 63  PKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVT 122

Query: 122 GPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESEK 181
           GPFK+NGVPLRRVNQ+YVI TSTKVDISGVNV+KFDDKYF K+ E+K KKGE EFFE+EK
Sbjct: 123 GPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEK 182

Query: 182 E 182
           +
Sbjct: 183 K 183

Mesembryanthemum crystallinum (taxid: 3544)

>sp|Q9FZ76|RL61_ARATH 60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1

 Score =  282 bits (722), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 135/159 (84%), Positives = 149/159 (93%)

Query: 8   PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKPPKFYPA 67
           P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD +PK  AP EKP KFYPA
Sbjct: 8   PKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPA 67

Query: 68  DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKIN 127
           +DVKKPLVN+RKPKPTKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKIN
Sbjct: 68  EDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKIN 127

Query: 128 GVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVE 166
           GVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K  E
Sbjct: 128 GVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAE 166

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9C5|RL63_ARATH 60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=2 SV=1

 Score =  281 bits (719), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/166 (83%), Positives = 149/166 (89%)

Query: 1   MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK 60
           M  KQ  P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD K K  AP EK
Sbjct: 1   MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60

Query: 61  PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
           PPKFYPA+DVKKPL N+R  KPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV
Sbjct: 61  PPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120

Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVE 166
           +GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K  E
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAE 166

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9C6|RL62_ARATH 60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1

 Score =  276 bits (707), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 147/166 (88%)

Query: 1   MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK 60
           M  KQ   +V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD K K  AP EK
Sbjct: 1   MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60

Query: 61  PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
           PPKFYPA+DVKKPL N+R  KP KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV
Sbjct: 61  PPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120

Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVE 166
           +GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K  E
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAE 166

Arabidopsis thaliana (taxid: 3702)

>sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3

 Score =  162 bits (411), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 121/199 (60%), Gaps = 22/199 (11%)

Query: 6   GKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKP---- 61
           G+P  SRNP L+RGIG++SRS MY ++ L+  K            K K  A   KP    
Sbjct: 40  GQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGD 99

Query: 62  -------------PKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLIILAGRFKG 104
                        P++YP +DV +K L + +KP      KLRASITPGTVLIIL GR +G
Sbjct: 100 KNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTVLIILTGRHRG 159

Query: 105 KRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAK 163
           KRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DIS V + K   D YF K
Sbjct: 160 KRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKK 219

Query: 164 EVERKKKKGENEFFESEKE 182
           +  RK +  E E F++EKE
Sbjct: 220 KKLRKPRHQEGEIFDTEKE 238

Chinchilla lanigera (taxid: 34839)

>sp|Q2YGT9|RL6_PIG 60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3

 Score =  162 bits (409), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/197 (47%), Positives = 120/197 (60%), Gaps = 22/197 (11%)

Query: 8   PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKP------ 61
           P  SRNP L+RGIG++SRS MY ++ L+  K            K +  A   KP      
Sbjct: 38  PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKN 97

Query: 62  -----------PKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLIILAGRFKGKR 106
                      P++YP +DV +K L + +KP      KLRASITPGT+LIIL GR +GKR
Sbjct: 98  GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKR 157

Query: 107 VVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEV 165
           V+FLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DISGV + +   D YF K+ 
Sbjct: 158 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 217

Query: 166 ERKKKKGENEFFESEKE 182
            RK +  E E F++EKE
Sbjct: 218 LRKPRHQEGEIFDTEKE 234

Sus scrofa (taxid: 9823)

>sp|Q58DQ3|RL6_BOVIN 60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 93/197 (47%), Positives = 120/197 (60%), Gaps = 22/197 (11%)

Query: 8   PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKP------ 61
           P  SRNP L+RGIG++SRS MY ++ L+  K            K +  A   KP      
Sbjct: 41  PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKN 100

Query: 62  -----------PKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLIILAGRFKGKR 106
                      P++YP +DV +K L + +KP      KLRASITPGT+LIIL GR +GKR
Sbjct: 101 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKR 160

Query: 107 VVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEV 165
           VVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DISGV + +   D YF K+ 
Sbjct: 161 VVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKK 220

Query: 166 ERKKKKGENEFFESEKE 182
            RK +  E E F++E+E
Sbjct: 221 LRKPRHQEGEIFDTERE 237

Bos taurus (taxid: 9913)

>sp|Q02878|RL6_HUMAN 60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3

 Score =  155 bits (392), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/195 (47%), Positives = 118/195 (60%), Gaps = 22/195 (11%)

Query: 10  VSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKP-------- 61
            SRNP L+RGIG++SRS MY ++ ++  K            K K  A   KP        
Sbjct: 44  CSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGG 103

Query: 62  ---------PKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLIILAGRFKGKRVV 108
                    P++YP +DV +K L + +KP      KLRASITPGT+LIIL GR +GKRVV
Sbjct: 104 TRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVV 163

Query: 109 FLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVER 167
           FLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DIS V + K   D YF K+  R
Sbjct: 164 FLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLR 223

Query: 168 KKKKGENEFFESEKE 182
           K +  E E F++EKE
Sbjct: 224 KPRHQEGEIFDTEKE 238

Specifically binds to domain C of the Tax-responsive enhancer element in the long terminal repeat of HTLV-I.

Homo sapiens (taxid: 9606)

>sp|P47911|RL6_MOUSE 60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3

 Score =  154 bits (389), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/205 (46%), Positives = 118/205 (57%), Gaps = 41/205 (20%)

Query: 10  VSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNG 42
            SRNP L+RGIG++SRS MY ++ L+  K                            KNG
Sbjct: 51  CSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNG 110

Query: 43  GVFPRHDPKPKAAAPAEKPPKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLIIL 98
           G                K P++YP +DV +K L + +KP      +LR+SITPGTVLIIL
Sbjct: 111 GT---------RVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIIL 161

Query: 99  AGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FD 157
            GR +GKRVVFLKQL SGLLLV+GP  IN VPLRR +Q +VI TSTKVDIS V + K   
Sbjct: 162 TGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLT 221

Query: 158 DKYFAKEVERKKKKGENEFFESEKE 182
           D YF K+  RK +  E E F++EKE
Sbjct: 222 DAYFKKKQLRKPRHQEGEIFDTEKE 246

Mus musculus (taxid: 10090)

>sp|P21533|RL6_RAT 60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5

 Score =  153 bits (387), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 95/207 (45%), Positives = 119/207 (57%), Gaps = 41/207 (19%)

Query: 8   PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------K 40
           P  SRNP L+RGIG++SRS MY ++ L+  K                            K
Sbjct: 51  PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDK 110

Query: 41  NGGVFPRHDPKPKAAAPAEKPPKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLI 96
           NGG                K P++YP +DV +K L + +KP      +LR+SITPGTVLI
Sbjct: 111 NGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLI 161

Query: 97  ILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK- 155
           IL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTKVDIS V + K 
Sbjct: 162 ILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKH 221

Query: 156 FDDKYFAKEVERKKKKGENEFFESEKE 182
             D YF K+  RK +  E E F++EKE
Sbjct: 222 LTDAYFKKKPLRKPRHQEGEIFDTEKE 248

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
357464351	233	60S ribosomal protein L6 [Medicago trunc	0.989	0.781	0.857	1e-84
357464405	233	60S ribosomal protein L6 [Medicago trunc	0.989	0.781	0.851	1e-83
217071500	234	unknown [Medicago truncatula]	0.989	0.777	0.846	9e-83
7208784	233	60S ribosomal protein L6 [Cicer arietinu	0.989	0.781	0.829	7e-82
388519729	234	unknown [Medicago truncatula]	0.989	0.777	0.841	7e-82
449476360	231	PREDICTED: 60S ribosomal protein L6-like	0.923	0.735	0.883	2e-81
255567646	231	60S ribosomal protein L6, putative [Rici	0.923	0.735	0.877	3e-81
449464888	231	PREDICTED: 60S ribosomal protein L6-like	0.923	0.735	0.877	1e-80
255544260	233	60S ribosomal protein L6, putative [Rici	0.891	0.703	0.890	4e-80
356525539	232	PREDICTED: 60S ribosomal protein L6-like	0.929	0.737	0.854	4e-79

>gi|357464351|ref|XP_003602457.1| 60S ribosomal protein L6 [Medicago truncatula] gi|355491505|gb|AES72708.1| 60S ribosomal protein L6 [Medicago truncatula]

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 156/182 (85%), Positives = 168/182 (92%)

Query: 1   MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK 60
           MAPKQ   RVSRNPELIRGIGK+SRS MYHKRGLWAIKAK+GG FPRHDP  K AAP EK
Sbjct: 1   MAPKQRTARVSRNPELIRGIGKYSRSAMYHKRGLWAIKAKHGGAFPRHDPVAKPAAPVEK 60

Query: 61  PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
           PPKFYPADDVKKPL NK +PKPTKLRASITPGTVLI+LAGRFKGKRVVFLKQLPSGLLLV
Sbjct: 61  PPKFYPADDVKKPLRNKHRPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLV 120

Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESE 180
           +GPFKINGVPLRRVNQ+YVIGTSTKVDIS VNVDKFDDKYF+KE ++K KKGE+EFFE++
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISSVNVDKFDDKYFSKESQKKTKKGESEFFEAD 180

Query: 181 KE 182
           KE
Sbjct: 181 KE 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464405|ref|XP_003602484.1| 60S ribosomal protein L6 [Medicago truncatula] gi|217071394|gb|ACJ84057.1| unknown [Medicago truncatula] gi|217071824|gb|ACJ84272.1| unknown [Medicago truncatula] gi|355491532|gb|AES72735.1| 60S ribosomal protein L6 [Medicago truncatula] gi|388498428|gb|AFK37280.1| unknown [Medicago truncatula]

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 155/182 (85%), Positives = 165/182 (90%)

Query: 1   MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK 60
           MAPK    RVSRNPELIRGIGK+SRS MYHKRGLWAIKAK+GG FPRHDP  K AAP EK
Sbjct: 1   MAPKTRTARVSRNPELIRGIGKYSRSAMYHKRGLWAIKAKHGGAFPRHDPVAKPAAPVEK 60

Query: 61  PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
           PPKFYPADDVKKPL NK KPKPTKLRASITPGTVLI+LAGRFKGKRVVFLKQLPSGLLLV
Sbjct: 61  PPKFYPADDVKKPLRNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLV 120

Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESE 180
           +GPFKINGVPLRRVNQ+YVIGTSTKVDIS VN DKFDDKYF+KE ++K KKGE EFFE++
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISSVNADKFDDKYFSKESQKKTKKGEGEFFEAD 180

Query: 181 KE 182
           KE
Sbjct: 181 KE 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071500|gb|ACJ84110.1| unknown [Medicago truncatula]

 Score =  311 bits (796), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 155/183 (84%), Positives = 167/183 (91%), Gaps = 1/183 (0%)

Query: 1   MAP-KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAE 59
           MAP K+  PRVSRNP+LIRGIGKFS+S+MYHK+G+WAIKAKNGGVFPRHDPKPK    AE
Sbjct: 1   MAPTKERAPRVSRNPDLIRGIGKFSKSQMYHKKGIWAIKAKNGGVFPRHDPKPKPETAAE 60

Query: 60  KPPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLL 119
           KPPKFYPADDVKKPL NK KPK TKLRASITPGTVLI+LAGRFKGKRVVFLKQLPSGLLL
Sbjct: 61  KPPKFYPADDVKKPLRNKHKPKQTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLL 120

Query: 120 VSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFES 179
           V+GPFKINGVPLRRVNQ+YVIGTSTKVDISGVNVD  DDKYF+KE  +KK KGE EFFES
Sbjct: 121 VTGPFKINGVPLRRVNQAYVIGTSTKVDISGVNVDNLDDKYFSKEAPKKKSKGEGEFFES 180

Query: 180 EKE 182
           +KE
Sbjct: 181 DKE 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7208784|emb|CAB76914.1| 60S ribosomal protein L6 [Cicer arietinum]

 Score =  308 bits (789), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 151/182 (82%), Positives = 163/182 (89%)

Query: 1   MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK 60
           MAPKQ   RVSRNP+LIRGIGK+S+S MYHKRGLWAIKAK+GG FP+HDPKPK  APAEK
Sbjct: 1   MAPKQRTARVSRNPDLIRGIGKYSKSAMYHKRGLWAIKAKHGGAFPKHDPKPKPEAPAEK 60

Query: 61  PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
            PKFYPA DV+KPL NK KPKPTKLRA+ITPGTVLI+LAGRFKGKRVVFLKQLPSGLL  
Sbjct: 61  APKFYPAHDVQKPLRNKHKPKPTKLRANITPGTVLILLAGRFKGKRVVFLKQLPSGLLTC 120

Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESE 180
           SGPFKINGVPLRRVNQSYVIGTSTKVD+S VNVDKFDDKYF+K  E+K  KGE EFF+SE
Sbjct: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDVSSVNVDKFDDKYFSKVAEKKTTKGEGEFFDSE 180

Query: 181 KE 182
           KE
Sbjct: 181 KE 182

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519729|gb|AFK47926.1| unknown [Medicago truncatula]

 Score =  308 bits (788), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 154/183 (84%), Positives = 166/183 (90%), Gaps = 1/183 (0%)

Query: 1   MAP-KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAE 59
           MAP K+  PRVSRNP+LIRGIGKFS+S+MYHK+G+WAIKAKNGGVFPRHDPKPK    AE
Sbjct: 1   MAPTKERAPRVSRNPDLIRGIGKFSKSQMYHKKGIWAIKAKNGGVFPRHDPKPKPETAAE 60

Query: 60  KPPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLL 119
           KPPKFYPADDVKKPL NK KPK TKLRASITPGTVLI+LAGRFKGKRVVFLKQLPSGLLL
Sbjct: 61  KPPKFYPADDVKKPLRNKHKPKQTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLL 120

Query: 120 VSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFES 179
           V+GPFKINGVPLRRVNQ+YVIGTSTKVDISGVNVD  DDKYF+KE  +KK KGE EFF S
Sbjct: 121 VTGPFKINGVPLRRVNQAYVIGTSTKVDISGVNVDNLDDKYFSKEAPKKKSKGEGEFFGS 180

Query: 180 EKE 182
           +KE
Sbjct: 181 DKE 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476360|ref|XP_004154716.1| PREDICTED: 60S ribosomal protein L6-like [Cucumis sativus]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 152/172 (88%), Positives = 162/172 (94%), Gaps = 2/172 (1%)

Query: 1   MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK 60
           MAPK    RVSRNPELIRG+GK+SRSKMYHKRGLWAIKAKNGGVFPRHD KPKA +PAEK
Sbjct: 1   MAPKTA--RVSRNPELIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADSPAEK 58

Query: 61  PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
           PPKFYPADDVKKPLVNKRKPKPTKLR+SITPGTVLIIL GRFKGKRVVFLKQLPSGLLLV
Sbjct: 59  PPKFYPADDVKKPLVNKRKPKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLV 118

Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKG 172
           +GPFK+NGVPLRRVNQSYVI TSTKVDI+GVNV+KF DKYF+KEV +KKKKG
Sbjct: 119 TGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFGDKYFSKEVHQKKKKG 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567646|ref|XP_002524802.1| 60S ribosomal protein L6, putative [Ricinus communis] gi|223535986|gb|EEF37645.1| 60S ribosomal protein L6, putative [Ricinus communis]

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 151/172 (87%), Positives = 162/172 (94%), Gaps = 2/172 (1%)

Query: 1   MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK 60
           MAPK   PR+SRNP L+RGIGK+SRS+MYHKRGLWAIKAKNGGVFP+HDPKPK A+PAEK
Sbjct: 1   MAPKT--PRISRNPNLVRGIGKYSRSQMYHKRGLWAIKAKNGGVFPKHDPKPKPASPAEK 58

Query: 61  PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
           PPKFYPADD+KKPL NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV
Sbjct: 59  PPKFYPADDIKKPLHNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLV 118

Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKG 172
           +GPFKINGVPLRRVNQSYVI TSTKVDISGVN DKFDDKYFAK+ E++KKKG
Sbjct: 119 TGPFKINGVPLRRVNQSYVIATSTKVDISGVNADKFDDKYFAKQAEKRKKKG 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464888|ref|XP_004150161.1| PREDICTED: 60S ribosomal protein L6-like [Cucumis sativus]

 Score =  303 bits (777), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 151/172 (87%), Positives = 161/172 (93%), Gaps = 2/172 (1%)

Query: 1   MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK 60
           MAPK    RVSRNPELIRG+GK+SRSKMYHKRGLWAIKAKNGGVFPRHD KPKA +PAEK
Sbjct: 1   MAPKTA--RVSRNPELIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADSPAEK 58

Query: 61  PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
           PPKFYPADDVKKPLVNKRKPKPTKLR+SITPGTVLIIL GRFKGKRVVFLKQLP GLLLV
Sbjct: 59  PPKFYPADDVKKPLVNKRKPKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPFGLLLV 118

Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKG 172
           +GPFK+NGVPLRRVNQSYVI TSTKVDI+GVNV+KF DKYF+KEV +KKKKG
Sbjct: 119 TGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFGDKYFSKEVHQKKKKG 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544260|ref|XP_002513192.1| 60S ribosomal protein L6, putative [Ricinus communis] gi|223547690|gb|EEF49183.1| 60S ribosomal protein L6, putative [Ricinus communis]

 Score =  302 bits (773), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 146/164 (89%), Positives = 158/164 (96%)

Query: 1   MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK 60
           MAPK   P+V+RNP+L+RGIGK+SRS+MYHKRGLWAIKAKNGGVFP+HDPKPK AAPAEK
Sbjct: 1   MAPKTRTPKVNRNPDLVRGIGKYSRSQMYHKRGLWAIKAKNGGVFPKHDPKPKPAAPAEK 60

Query: 61  PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
           PPKFYPADDVKKPL+NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLL+
Sbjct: 61  PPKFYPADDVKKPLLNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLI 120

Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKE 164
           +GPFKINGVPLRRVNQSYVI TSTKVDISGVNVDKFDDK+FAK+
Sbjct: 121 TGPFKINGVPLRRVNQSYVIATSTKVDISGVNVDKFDDKFFAKQ 164

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525539|ref|XP_003531382.1| PREDICTED: 60S ribosomal protein L6-like [Glycine max]

 Score =  299 bits (765), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 147/172 (85%), Positives = 159/172 (92%), Gaps = 1/172 (0%)

Query: 1   MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK 60
           MAPK  + +VSRNPELIRGIGK+SRS+MYHKRG+WAIKAKNGGV PRHDPKPK   P EK
Sbjct: 1   MAPKITR-KVSRNPELIRGIGKYSRSQMYHKRGIWAIKAKNGGVLPRHDPKPKPETPTEK 59

Query: 61  PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
           PPKFYPADDVKKPLVNK KPKP KLRASITPGTVLI+LAGRFKGKRVVFLKQLPSGLLLV
Sbjct: 60  PPKFYPADDVKKPLVNKHKPKPAKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLV 119

Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKG 172
           +GPFK+NGVPLRRVNQ+YVIGTSTKVD+S VNV+ FDDKYFAKE +RKKKKG
Sbjct: 120 TGPFKVNGVPLRRVNQAYVIGTSTKVDVSAVNVNNFDDKYFAKEAQRKKKKG 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2027483	233	AT1G18540 [Arabidopsis thalian	0.951	0.751	0.794	1.2e-72
TAIR|locus:2031576	233	AT1G74050 [Arabidopsis thalian	0.989	0.781	0.774	6.7e-72
TAIR|locus:2031561	233	AT1G74060 [Arabidopsis thalian	0.989	0.781	0.763	1.6e-70
UNIPROTKB|F1Q424	288	RPL6 "60S ribosomal protein L6	0.641	0.409	0.576	1.4e-40
UNIPROTKB|Q02878	288	RPL6 "60S ribosomal protein L6	0.641	0.409	0.576	1.7e-40
UNIPROTKB|Q2YGT9	284	RPL6 "60S ribosomal protein L6	0.641	0.415	0.568	2.2e-40
UNIPROTKB|Q58DQ3	287	RPL6 "60S ribosomal protein L6	0.641	0.411	0.568	4.6e-40
MGI|MGI:108057	296	Rpl6 "ribosomal protein L6" [M	0.641	0.398	0.584	9.4e-40
UNIPROTKB|H7C5Y5	297	H7C5Y5 "60S ribosomal protein	0.641	0.397	0.576	2.2e-38
RGD|619826	298	Rpl6 "ribosomal protein L6" [R	0.641	0.395	0.576	2.2e-38

TAIR|locus:2027483 AT1G18540 [Arabidopsis thaliana (taxid:3702)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 139/175 (79%), Positives = 154/175 (88%)

Query:     8 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPA 67
             P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA
Sbjct:     8 PKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPA 67

Query:    68 DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKIN 127
             +DVKKPLVN+RKPKPTKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKIN
Sbjct:    68 EDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKIN 127

Query:   128 GVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESEKE 182
             GVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K  E+KKKK E EFFE+EKE
Sbjct:   128 GVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKE 182

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2031576 AT1G74050 [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 141/182 (77%), Positives = 154/182 (84%)

Query:     1 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXX 60
             M  KQ  P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD           
Sbjct:     1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60

Query:    61 XXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
                FYPA+DVKKPL N+R  KPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV
Sbjct:    61 PPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120

Query:   121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESE 180
             +GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K  E+KKKK E EFFE+E
Sbjct:   121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAE 180

Query:   181 KE 182
             KE
Sbjct:   181 KE 182

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2031561 AT1G74060 [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 139/182 (76%), Positives = 152/182 (83%)

Query:     1 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXX 60
             M  KQ   +V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD           
Sbjct:     1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60

Query:    61 XXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
                FYPA+DVKKPL N+R  KP KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV
Sbjct:    61 PPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120

Query:   121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESE 180
             +GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K  E+KKKK E EFFE+E
Sbjct:   121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAE 180

Query:   181 KE 182
             KE
Sbjct:   181 KE 182

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

UNIPROTKB|F1Q424 RPL6 "60S ribosomal protein L6" [Canis lupus familiaris (taxid:9615)]

 Score = 333 (122.3 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
 Identities = 72/125 (57%), Positives = 89/125 (71%)

Query:    64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
             +YP +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRVVFLKQL SGLL
Sbjct:   115 YYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLSSGLL 173

Query:   119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVERKKKKGENEFF 177
             LV+GP  +N VPLRR +Q +VI TSTK+DIS V + K   D YF K+  RK +  E E F
Sbjct:   174 LVTGPLALNRVPLRRTHQKFVIATSTKIDISSVKIPKHLTDAYFKKKKLRKPRHQEGEIF 233

Query:   178 ESEKE 182
             ++EKE
Sbjct:   234 DTEKE 238

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q02878 RPL6 "60S ribosomal protein L6" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
 Identities = 72/125 (57%), Positives = 89/125 (71%)

Query:    64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
             +YP +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRVVFLKQL SGLL
Sbjct:   115 YYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLL 173

Query:   119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVERKKKKGENEFF 177
             LV+GP  +N VPLRR +Q +VI TSTK+DIS V + K   D YF K+  RK +  E E F
Sbjct:   174 LVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIF 233

Query:   178 ESEKE 182
             ++EKE
Sbjct:   234 DTEKE 238

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003677 "DNA binding" evidence=TAS

GO:0003723 "RNA binding" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|Q2YGT9 RPL6 "60S ribosomal protein L6" [Sus scrofa (taxid:9823)]

 Score = 336 (123.3 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 71/125 (56%), Positives = 90/125 (72%)

Query:    64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
             +YP +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRV+FLKQL SGLL
Sbjct:   111 YYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLL 169

Query:   119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVERKKKKGENEFF 177
             LV+GP  +N VPLRR +Q +VI TSTK+DISGV + +   D YF K+  RK +  E E F
Sbjct:   170 LVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIF 229

Query:   178 ESEKE 182
             ++EKE
Sbjct:   230 DTEKE 234

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q58DQ3 RPL6 "60S ribosomal protein L6" [Bos taurus (taxid:9913)]

 Score = 333 (122.3 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
 Identities = 71/125 (56%), Positives = 90/125 (72%)

Query:    64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
             +YP +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRVVFLKQL SGLL
Sbjct:   114 YYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLL 172

Query:   119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVERKKKKGENEFF 177
             LV+GP  +N VPLRR +Q +VI TSTK+DISGV + +   D YF K+  RK +  E E F
Sbjct:   173 LVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIF 232

Query:   178 ESEKE 182
             ++E+E
Sbjct:   233 DTERE 237

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:108057 Rpl6 "ribosomal protein L6" [Mus musculus (taxid:10090)]

 Score = 329 (120.9 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
 Identities = 73/125 (58%), Positives = 89/125 (71%)

Query:    64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
             +YP +DV + L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLL
Sbjct:   123 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLL 181

Query:   119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVERKKKKGENEFF 177
             LV+GP  IN VPLRR +Q +VI TSTKVDIS V + K   D YF K+  RK +  E E F
Sbjct:   182 LVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIF 241

Query:   178 ESEKE 182
             ++EKE
Sbjct:   242 DTEKE 246

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISA

GO:0005730 "nucleolus" evidence=ISA

GO:0005737 "cytoplasm" evidence=ISA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|H7C5Y5 H7C5Y5 "60S ribosomal protein L6" [Rattus norvegicus (taxid:10116)]

 Score = 326 (119.8 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
 Identities = 72/125 (57%), Positives = 89/125 (71%)

Query:    64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
             +YP +DV + L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLL
Sbjct:   124 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLL 182

Query:   119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVERKKKKGENEFF 177
             LV+GP  +N VPLRR +Q +VI TSTKVDIS V + K   D YF K+  RK +  E E F
Sbjct:   183 LVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIF 242

Query:   178 ESEKE 182
             ++EKE
Sbjct:   243 DTEKE 247

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|619826 Rpl6 "ribosomal protein L6" [Rattus norvegicus (taxid:10116)]

 Score = 326 (119.8 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
 Identities = 72/125 (57%), Positives = 89/125 (71%)

Query:    64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
             +YP +DV + L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLL
Sbjct:   125 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLL 183

Query:   119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVERKKKKGENEFF 177
             LV+GP  +N VPLRR +Q +VI TSTKVDIS V + K   D YF K+  RK +  E E F
Sbjct:   184 LVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIF 243

Query:   178 ESEKE 182
             ++EKE
Sbjct:   244 DTEKE 248

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34091	RL6_MESCR	No assigned EC number	0.8397	0.9836	0.7735	N/A	no
Q9FZ76	RL61_ARATH	No assigned EC number	0.8490	0.8641	0.6824	yes	no
P79071	RL6_SCHPO	No assigned EC number	0.5035	0.7065	0.6666	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00008857001	RecName- Full=60S ribosomal protein L6; (233 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026857001	RecName- Full=60S ribosomal protein L36; (110 aa)				•	•	•	•		0.941
	GSVIVG00018552001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)				•	•	•	•		0.929
	GSVIVG00031140001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (234 aa)				•	•	•	•		0.886
	GSVIVG00029522001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (129 aa)				•	•	•	•		0.876
	GSVIVG00025575001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)				•	•	•	•		0.855
	GSVIVG00023139001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)				•	•	•	•		0.840
	GSVIVG00022475001	RecName- Full=60S ribosomal protein L13; (207 aa)				•	•	•	•		0.824
	GSVIVG00001686001	RecName- Full=60S ribosomal protein L13; (207 aa)				•	•	•	•		0.822
	GSVIVG00017233001	RecName- Full=40S ribosomal protein S12; (140 aa)				•		•			0.800
	GSVIVG00016417001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (83 aa)				•		•	•		0.797

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
cd13156	152	cd13156, KOW_RPL6, KOW motif of Ribosomal Protein	2e-60
pfam01159	108	pfam01159, Ribosomal_L6e, Ribosomal protein L6e	3e-25
pfam03868	58	pfam03868, Ribosomal_L6e_N, Ribosomal protein L6,	2e-17
COG2163	125	COG2163, RPL14A, Ribosomal protein L14E/L6E/L27E [	7e-16
PRK04333	84	PRK04333, PRK04333, 50S ribosomal protein L14e; Va	0.001

>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6

 Score =  184 bits (470), Expect = 2e-60
 Identities = 78/102 (76%), Positives = 89/102 (87%)

Query: 81  KPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVI 140
           KP KLR+SITPGTVLI+LAGRF+GKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ YVI
Sbjct: 1   KPRKLRSSITPGTVLILLAGRFRGKRVVFLKQLDSGLLLVTGPFKINGVPLRRVNQRYVI 60

Query: 141 GTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESEKE 182
            TSTKVDISGV V K +D YF ++ ++KKKK E EFFE +K+
Sbjct: 61  ATSTKVDISGVKVPKLNDAYFKRKKKKKKKKKEGEFFEEKKK 102

RPL6 contains KOW motif that has an extra ribosomal role as an oncogenic. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. . Length = 152

>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e

 Score = 93.5 bits (233), Expect = 3e-25
 Identities = 40/58 (68%), Positives = 47/58 (81%), Gaps = 1/58 (1%)

Query: 126 INGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVERKKKKGENEFFESEKE 182
           INGVPLRRVNQ YVI TSTKVDISGV V +K +D+YF +E ++KKKK E EFF  +KE
Sbjct: 1   INGVPLRRVNQRYVIATSTKVDISGVKVPEKINDEYFKREKKKKKKKSEGEFFAEKKE 58

Length = 108

>gnl|CDD|217770 pfam03868, Ribosomal_L6e_N, Ribosomal protein L6, N-terminal domain

 Score = 72.1 bits (177), Expect = 2e-17
 Identities = 27/57 (47%), Positives = 34/57 (59%)

Query: 1  MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAP 57
          M   + K   SRNP+L RGIG++SRS MYH+R L+  KAK GG  P+  P      P
Sbjct: 1  MPVAKKKKHRSRNPDLARGIGRYSRSAMYHRRALYKRKAKKGGTKPKVKPPATVVKP 57

Length = 58

>gnl|CDD|225074 COG2163, RPL14A, Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]

 Score = 69.8 bits (171), Expect = 7e-16
 Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 2/98 (2%)

Query: 85  LRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTST 144
           +RAS+  G V+++ AGRF GK+VV +K +    +L++GP K+ GVP RR+N  ++  T  
Sbjct: 1   MRASLEVGRVVVVTAGRFAGKKVVIVKIIDDNFVLITGPKKVKGVPRRRINIKHLEPTDK 60

Query: 145 KVDI-SGVNVDKFDDKYFAKEVERKKKKGENEFFESEK 181
            +D+  G + +K      A  V   K     +  E++K
Sbjct: 61  VIDLVRGASDEKVKKANEAAGV-LAKLDKSAKNLETKK 97

Length = 125

>gnl|CDD|235283 PRK04333, PRK04333, 50S ribosomal protein L14e; Validated

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 87  ASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKV 146
            +I  G V +  AGR  G++ V +  +    +LV+GP  + GV  RR N  ++  T  KV
Sbjct: 2   PAIEVGRVCVKTAGREAGRKCVIVDIIDKNFVLVTGP-SLTGVKRRRCNIKHLEPTDKKV 60

Query: 147 DIS 149
           DI 
Sbjct: 61  DIE 63

Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
PF01159	108	Ribosomal_L6e: Ribosomal protein L6e ; InterPro: I	99.88
KOG1694	152	consensus 60s ribosomal protein L6 [Translation, r	99.86
COG2163	125	RPL14A Ribosomal protein L14E/L6E/L27E [Translatio	99.69
PF03868	59	Ribosomal_L6e_N: Ribosomal protein L6, N-terminal	99.61
PTZ00471	134	60S ribosomal protein L27; Provisional	99.49
PRK04333	84	50S ribosomal protein L14e; Validated	99.17
KOG3418	136	consensus 60S ribosomal protein L27 [Translation,	98.67
PTZ00065	130	60S ribosomal protein L14; Provisional	98.18
CHL00141	83	rpl24 ribosomal protein L24; Validated	95.35
PRK12281	76	rplX 50S ribosomal protein L24; Reviewed	95.21
PRK01191	120	rpl24p 50S ribosomal protein L24P; Validated	95.01
TIGR01080	114	rplX_A_E ribosomal protein L24p/L26e, archaeal/euk	94.48
PTZ00194	143	60S ribosomal protein L26; Provisional	94.35
KOG3421	136	consensus 60S ribosomal protein L14 [Translation,	93.87
KOG1694	152	consensus 60s ribosomal protein L6 [Translation, r	93.73
PRK00004	105	rplX 50S ribosomal protein L24; Reviewed	93.2
TIGR01079	104	rplX_bact ribosomal protein L24, bacterial/organel	92.58
COG0198	104	RplX Ribosomal protein L24 [Translation, ribosomal	92.23
smart00739	28	KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i	87.62
PF00467	32	KOW: KOW motif; InterPro: IPR005824 Ribosomes are	80.62

>PF01159 Ribosomal_L6e: Ribosomal protein L6e ; InterPro: IPR000915 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.88  E-value=1.3e-24  Score=168.26  Aligned_cols=57  Identities=68%  Similarity=1.083  Sum_probs=50.0

Q ss_pred             ecCcceeeeecceEEeeeeEEecCCcccC-ccChHhhhhhhhhhhccccccccccccc
Q 029973          126 INGVPLRRVNQSYVIGTSTKVDISGVNVD-KFDDKYFAKEVERKKKKGENEFFESEKE  182 (184)
Q Consensus       126 lN~vPlrRv~q~~VIaTstkidis~vki~-~l~D~YFkk~k~~k~~~~e~eiF~~~ke  182 (184)
                      |||||||||||+|||||||+||||+|+|| +|||+||++.+.++++++|++||++++|
T Consensus         1 iNGVPLRRVnQ~yVIATSTkvDis~v~ip~~~~D~YF~~~~~~k~k~~e~~~f~~~~~   58 (108)
T PF01159_consen    1 INGVPLRRVNQAYVIATSTKVDISGVKIPEKIDDAYFKRKKKKKKKKGEGDFFAEKKE   58 (108)
T ss_dssp             SSS--SEEESSCCCEECSCESCHCCHHH-CCTTGSSSCHCCCCHHHHHHCHCCHHHHH
T ss_pred             CCCCcceecccceEEEEeeEEeccccchhhccchHHHHhhhhccccccHHHHHhcccc
Confidence            79999999999999999999999999995 6999999998877889999999997653

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families includes mammalian ribosomal protein L6 (L6 was previously known as TAX-responsive enhancer element binding protein 107); Caenorhabditis elegans ribosomal protein L6 (R151.3); Saccharomyces cerevisiae (Baker's yeast) ribosomal protein YL16A/YL16B; and Mesembryanthemum crystallinum (Common ice plant) ribosomal protein YL16-like. These proteins have 175 (yeast) to 287 (mammalian) amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A18_E 4A1D_E 4A19_E 4A1B_E 3IZR_G 3O58_F 3O5H_F 3IZS_G.

>KOG1694 consensus 60s ribosomal protein L6 [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=2.6e-22  Score=163.42  Aligned_cols=90  Identities=56%  Similarity=0.841  Sum_probs=80.9

Q ss_pred             CCCCCCCCCCCCccCCCCCCCCcccccccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecceEE
Q 029973           61 PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVI  140 (184)
Q Consensus        61 ~p~yYptedv~~~~~~~~~~~~~klR~sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~~VI  140 (184)
                      +|.|||+      ...+.+.++++||+||+||||||||+                         .+||+|++|++|+|+|
T Consensus        12 ~~~~yp~------~k~~~~~~~~k~r~~l~~gtvliil~-------------------------~~ng~~~~~v~~~~~~   60 (152)
T KOG1694|consen   12 PPADYPR------KKARYSAKPSKLRASLTPGTVLIILA-------------------------PINGVPLKRVNERYVA   60 (152)
T ss_pred             Chhhccc------hhccccccchhhhhccCCCeeEEEec-------------------------ccCCcCcccccceEEe
Confidence            8889988      22334577899999999999999999                         6999999999999999


Q ss_pred             eeeeEEecCCcccC-ccChHhhhhhhhhhhccccccccccccc
Q 029973          141 GTSTKVDISGVNVD-KFDDKYFAKEVERKKKKGENEFFESEKE  182 (184)
Q Consensus       141 aTstkidis~vki~-~l~D~YFkk~k~~k~~~~e~eiF~~~ke  182 (184)
                      +||+ ||++||+++ ++||+||.+.+.++++++|+|||++++|
T Consensus        61 ~ts~-i~~~~vk~~e~~td~yf~K~k~~~~k~~e~~i~~~eke  102 (152)
T KOG1694|consen   61 TTSK-IDPSNVKIPEHLTDAYFKKKKLKKKKTQEGEIFAEEKE  102 (152)
T ss_pred             eeee-eccccccccccccHHHHhhhhccccccccchhhccccc
Confidence            9988 999999996 5999999999888999999999999875

>COG2163 RPL14A Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=3.1e-17  Score=130.06  Aligned_cols=81  Identities=36%  Similarity=0.589  Sum_probs=72.5

Q ss_pred             cccccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeEEecCCccc-CccChHhhhh
Q 029973           85 LRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAK  163 (184)
Q Consensus        85 lR~sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki-~~l~D~YFkk  163 (184)
                      ++++|.||+|+++++||++|++||+|+++|.+.++++||..+||+|++|+|-+|+++|++.+|+..... +.+.-+|+..
T Consensus         1 ~~~~l~~GrVvvv~~GR~aGkk~VIv~~iDd~~v~i~gp~~v~gv~r~r~n~~~l~~t~~~~~~~rg~~~~~v~~~~~a~   80 (125)
T COG2163           1 MRASLEVGRVVVVTAGRFAGKKVVIVKIIDDNFVLITGPKKVKGVPRRRINIKHLEPTDKVIDLVRGASDEKVKKANEAA   80 (125)
T ss_pred             CCccccCCeEEEEecceeCCceEEEEEEccCCEEEEeCCccccCCccccccceeeeccceeeeecccccHHHHHHHHHhh
Confidence            478899999999999999999999999999999999999999999999999999999999999866544 4567677765


Q ss_pred             hh
Q 029973          164 EV  165 (184)
Q Consensus       164 ~k  165 (184)
                      ..
T Consensus        81 ~~   82 (125)
T COG2163          81 GV   82 (125)
T ss_pred             hh
Confidence            53

>PF03868 Ribosomal_L6e_N: Ribosomal protein L6, N-terminal domain; InterPro: IPR005568 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.61  E-value=3.1e-17  Score=115.27  Aligned_cols=40  Identities=65%  Similarity=1.074  Sum_probs=24.4

Q ss_pred             CCCCCCCCCCCCCcccccCccccchhhhhhccccceeeec
Q 029973            1 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAK   40 (184)
Q Consensus         1 ma~kkg~p~~~rn~~l~~Gi~r~Srs~~y~rk~~~k~k~k   40 (184)
                      ||+++++|||+|||+|++||+|||||+||+|+|||+.|.+
T Consensus         1 m~~kK~k~~~~RN~~L~~GI~RySrS~my~kralyk~K~k   40 (59)
T PF03868_consen    1 MAPKKKKPHCSRNPVLVRGIGRYSRSAMYHKRALYKRKKK   40 (59)
T ss_dssp             ------------HHHHHTTTSHHHHHHHHHHHHH-S-THH
T ss_pred             CccccccccccCChhhhCccccccHHHHHHHHHHHHHhcc
Confidence            8999999999999999999999999999999999986643

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_G.

>PTZ00471 60S ribosomal protein L27; Provisional

Probab=99.49  E-value=4.4e-14  Score=113.39  Aligned_cols=62  Identities=37%  Similarity=0.675  Sum_probs=58.0

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeecCC-------ceEEEec----ccee--------------cCcceeeeecceEEee
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQLPS-------GLLLVSG----PFKI--------------NGVPLRRVNQSYVIGT  142 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL~s-------glllVtG----P~~l--------------N~vPlrRv~q~~VIaT  142 (184)
                      -+.||.|+|+|+|||+|+++|+||++|+       |.+||+|    |.++              ....+..+|.+|+++|
T Consensus         4 ~~kpgkVVivL~GR~AGkKaVivk~~ddgt~drpy~halVaGIdryP~kVtk~M~kkki~KRskiK~FvK~vNynHlmPT   83 (134)
T PTZ00471          4 FLKPGKVVIVTSGRYAGRKAVIVQNFDTASKERPYGHALVAGIKKYPKKVVRGMSKRTIARRSQVGVFLRVVNHKHFLPT   83 (134)
T ss_pred             cccCCEEEEEEccccCCcEEEEEeecCCCCccCcCceEEEEeecccchhhhhhccHHHHHHHhccccceEEEeeceeccc
Confidence            4689999999999999999999999998       5999999    8888              7778889999999999


Q ss_pred             eeEEecC
Q 029973          143 STKVDIS  149 (184)
Q Consensus       143 stkidis  149 (184)
                      ++.+||+
T Consensus        84 RY~vdi~   90 (134)
T PTZ00471         84 RYNMDMS   90 (134)
T ss_pred             ceeeecc
Confidence            9999998

>PRK04333 50S ribosomal protein L14e; Validated

Probab=99.17  E-value=7.3e-11  Score=87.94  Aligned_cols=70  Identities=33%  Similarity=0.448  Sum_probs=62.3

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeEEecCCcccCccChHhhh
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFA  162 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki~~l~D~YFk  162 (184)
                      .+.+|.++++++|+++|+.+|+++.++++.+||.||+. +++|.++.|.+|+..|+++++++.    ..+|+..+
T Consensus         3 ~v~~GrvV~~~~Grd~gk~~vIv~i~d~~~vlVdg~~~-~~~~rk~kn~khl~lt~~ki~~~~----~~~~~~vr   72 (84)
T PRK04333          3 AIEVGRVCVKTAGREAGRKCVIVDIIDKNFVLVTGPSL-TGVKRRRCNIKHLEPTDKKVDIEK----GASDEEVK   72 (84)
T ss_pred             cccccEEEEEeccCCCCCEEEEEEEecCCEEEEECCCc-CCCCCeeechHHEEEeeEEEECCC----CCCCHHHH
Confidence            57899999999999999999999999999999999987 999999999999999999998643    24555544

>KOG3418 consensus 60S ribosomal protein L27 [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=3e-08  Score=79.97  Aligned_cols=64  Identities=30%  Similarity=0.615  Sum_probs=57.4

Q ss_pred             ccccCCCcEEEEeeceecCceEEEeeecCCc-------eEEEeccceecCccee---------------------eeecc
Q 029973           86 RASITPGTVLIILAGRFKGKRVVFLKQLPSG-------LLLVSGPFKINGVPLR---------------------RVNQS  137 (184)
Q Consensus        86 R~sitpGtvlIiL~Gr~~GKRvVfLKqL~sg-------lllVtGP~~lN~vPlr---------------------Rv~q~  137 (184)
                      .+-+.||.||++++|+++|+++|++||.++|       .+||.|   |.+.|+.                     -+|-.
T Consensus         2 ~kflkPgkvv~v~sG~yAg~KaVivk~~Ddg~~d~p~~h~LvAg---i~ryP~kvt~~~gkkk~~krsk~k~flKv~ny~   78 (136)
T KOG3418|consen    2 AKFLKPGKVVLVLSGRYAGKKAVIVKNIDDGTEDKPYGHALVAG---VDRYPRKVTKSMGKKKLAKRSKVKPFLKVINYN   78 (136)
T ss_pred             cccccCCcEEEeecccccCccEEEEeecccCCccCCCceeeeee---hhhccccccccccchhhhhcccceeEEEEeecc
Confidence            3567899999999999999999999999987       999999   8888886                     58999


Q ss_pred             eEEeeeeEEecCCcc
Q 029973          138 YVIGTSTKVDISGVN  152 (184)
Q Consensus       138 ~VIaTstkidis~vk  152 (184)
                      ++++|...+|+...+
T Consensus        79 hlMptRy~vdv~~~k   93 (136)
T KOG3418|consen   79 HLMPTRYTVDVLALK   93 (136)
T ss_pred             cccCcceEEeehhhh
Confidence            999999999997543

>PTZ00065 60S ribosomal protein L14; Provisional

Probab=98.18  E-value=4.4e-06  Score=67.19  Aligned_cols=61  Identities=25%  Similarity=0.337  Sum_probs=57.6

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeEEecC
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDIS  149 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis  149 (184)
                      -+.+|.|+.|..|.+.||-||++..++.+-+||.|| ...|||.+.+|-+++..|..+|+|+
T Consensus         7 fVEiGRVvli~~Gp~~GKL~vIVDIID~nRvLVDGP-~~tgV~Rq~i~~k~l~LT~~~v~i~   67 (130)
T PTZ00065          7 FVEPGRLCLIQYGPDAGKLCFIVDIVTPTRVLVDGA-FITGVKRQSIPLKRLKLTDEKIKIN   67 (130)
T ss_pred             ceeeceEEEEecCCCCCCEEEEEEEEcCCeEEEeCC-CcCCcceeEEeccceEEccEEEecC
Confidence            467999999999999999999999999999999999 5779999999999999999999985

>CHL00141 rpl24 ribosomal protein L24; Validated

Probab=95.35  E-value=0.022  Score=42.36  Aligned_cols=65  Identities=23%  Similarity=0.236  Sum_probs=48.7

Q ss_pred             ccccCCCcEEEEeeceecCceEEEeeec-CCceEEEeccceecCcce-----eeeecceEEeeeeEEecCCccc
Q 029973           86 RASITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGVPL-----RRVNQSYVIGTSTKVDISGVNV  153 (184)
Q Consensus        86 R~sitpGtvlIiL~Gr~~GKRvVfLKqL-~sglllVtGP~~lN~vPl-----rRv~q~~VIaTstkidis~vki  153 (184)
                      .-.|.+|+.+++++|+++||.-.+++-+ +++.++|.|   +|-+--     ..-.+.-++.-..-|++|||.+
T Consensus         6 ~~~I~~GD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Veg---vn~~~k~~k~~~~~~~g~i~~~e~pI~~SnV~l   76 (83)
T CHL00141          6 KMHVKIGDTVKIISGSDKGKIGEVLKIIKKSNKVIVKG---INIKFKHIKPNKENEVGEIKQFEAPIHSSNVML   76 (83)
T ss_pred             eCcccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEcC---cEEEEEEcCCccCCCCCCEEEEECCCCHHHEEE
Confidence            3478899999999999999999999985 478899999   553221     1123345666666788888876

>PRK12281 rplX 50S ribosomal protein L24; Reviewed

Probab=95.21  E-value=0.027  Score=41.30  Aligned_cols=63  Identities=22%  Similarity=0.304  Sum_probs=46.0

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeec-CCceEEEeccceecCcce-----eeeecceEEeeeeEEecCCccc
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGVPL-----RRVNQSYVIGTSTKVDISGVNV  153 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL-~sglllVtGP~~lN~vPl-----rRv~q~~VIaTstkidis~vki  153 (184)
                      .|..|+-+++++|.++||.-.+++-+ .++-++|.|   +|-+--     ..-.+--++....-|++|||.+
T Consensus         6 ~I~kGD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Veg---vn~~kkh~kp~~~~~~G~i~~~e~pI~~SnV~l   74 (76)
T PRK12281          6 KVKKGDMVKVIAGDDKGKTGKVLAVLPKKNRVIVEG---VKIAKKAIKPSQKNPNGGFIEKEMPIHISNVKK   74 (76)
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEcC---cEEEEEEcCCCccCCCCCEEEEEcCcCHHHcee
Confidence            58899999999999999999999985 578899999   665421     1111234555555677777743

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated

Probab=95.01  E-value=0.043  Score=43.77  Aligned_cols=63  Identities=17%  Similarity=0.330  Sum_probs=48.2

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeec-CCceEEEeccceecCcceeeeecceEEeeeeEEecCCcccC--ccChH
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVD--KFDDK  159 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL-~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki~--~l~D~  159 (184)
                      .|..|+.|+|++|.++|+..-+++-+ ..+-++|.|   +|-+-    .+-  +....-|++|||.+-  .++|.
T Consensus        45 ~IkkGD~V~VisG~~KGk~GkV~~V~~~~~~V~VeG---vn~~k----~~G--~~~e~pIh~SNV~l~~l~l~~~  110 (120)
T PRK01191         45 PVRKGDTVKVMRGDFKGEEGKVVEVDLKRGRIYVEG---VTVKK----ADG--TEVPRPIHPSNVMITKLDLSDE  110 (120)
T ss_pred             eEeCCCEEEEeecCCCCceEEEEEEEcCCCEEEEeC---cEEEC----CCC--eEEEcccchhHeEEEeCccCCH
Confidence            47799999999999999999999986 478899999   55322    122  445567899999883  36554

>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic

Probab=94.48  E-value=0.065  Score=42.25  Aligned_cols=63  Identities=24%  Similarity=0.325  Sum_probs=48.4

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeec-CCceEEEeccceecCcceeeeecceEEeeeeEEecCCcccC--ccChH
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVD--KFDDK  159 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL-~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki~--~l~D~  159 (184)
                      .|.-|+.|+|++|.|+|+.-.+++-+ ..+.++|.|   ||-+-   -+ -  +....-|++|||.+-  .|+|+
T Consensus        41 ~IkkGD~V~Vi~Gk~KGk~GkV~~V~~~~~~V~Veg---vn~~k---~~-G--~~~e~pIh~SnV~l~~l~l~~~  106 (114)
T TIGR01080        41 PVRKGDKVRIMRGDFKGHEGKVSKVDLKRYRIYVEG---VTKEK---VN-G--TEVPVPIHPSNVMITKLNLDDE  106 (114)
T ss_pred             eeecCCEEEEecCCCCCCEEEEEEEEcCCCEEEEcC---eEEEC---CC-C--eEEEeeechHHeEEEeccCChH
Confidence            47789999999999999999999986 467799999   55322   12 2  456667999999883  46665

This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.

>PTZ00194 60S ribosomal protein L26; Provisional

Probab=94.35  E-value=0.1  Score=42.76  Aligned_cols=63  Identities=13%  Similarity=0.199  Sum_probs=49.8

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeec-CCceEEEeccceecCcceeeeecceEEeeeeEEecCCccc--CccChH
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDDK  159 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL-~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki--~~l~D~  159 (184)
                      .|.-|+.|+|++|.|+|++--+++-+ .++-++|.|   ||   +..-|.+-   ...-|++|||-|  +.++|.
T Consensus        46 ~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~ViVEg---vn---~~Kk~gk~---~e~PIh~SNV~iv~l~l~~~  111 (143)
T PTZ00194         46 PVRKDDEVMVVRGHHKGREGKVTAVYRKKWVIHIEK---IT---REKANGEP---VQIGIHPSNVIITKLKLNKD  111 (143)
T ss_pred             eeecCCEEEEecCCCCCCceEEEEEEcCCCEEEEeC---eE---EEecCCCE---eecCcCchheEEEccccCch
Confidence            47889999999999999999999986 467899888   44   34444443   355799999998  468887

>KOG3421 consensus 60S ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

Probab=93.87  E-value=0.073  Score=43.42  Aligned_cols=61  Identities=25%  Similarity=0.344  Sum_probs=52.8

Q ss_pred             ccccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeEEec
Q 029973           86 RASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDI  148 (184)
Q Consensus        86 R~sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidi  148 (184)
                      ..+...|.|.++..|.+.||-|+++-+.++..+|+-||  ..+||..-+|-+-+.-|-..+|+
T Consensus         4 ~r~veVGrva~v~~G~~~GkL~AIVdviDqnr~lvDGp--~t~v~rq~~~~~~~~LT~~~~kf   64 (136)
T KOG3421|consen    4 KRFVEVGRVALVSFGPDAGKLVAIVDVIDQNRALVDGP--CTGVPRQAMNLKCLQLTDFVLKF   64 (136)
T ss_pred             hhhhhcceEEEEEecCCCceEEEEEEeecchhhhccCc--ccccchhhcchhheeeeeeeEec
Confidence            45678899999999999999999999999999999999  56888887777777777766665

>KOG1694 consensus 60s ribosomal protein L6 [Translation, ribosomal structure and biogenesis]

Probab=93.73  E-value=0.0077  Score=49.65  Aligned_cols=122  Identities=16%  Similarity=0.098  Sum_probs=83.9

Q ss_pred             CCCCCCcccccCccccchhhhhhccccceee-----ec-----CCCcC-----CCCCCC----Cc--ceeecCCCCC---
Q 029973            8 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIK-----AK-----NGGVF-----PRHDPK----PK--AAAPAEKPPK---   63 (184)
Q Consensus         8 p~~~rn~~l~~Gi~r~Srs~~y~rk~~~k~k-----~k-----~gg~~-----pkng~k----g~--r~v~l~k~p~---   63 (184)
                      +||++|+    |++|  .++||.+   +++.     ++     .-|.+     +.||..    ++  .+.....++.   
T Consensus         1 ~~~~~~~----~~~~--~~~~yp~---~k~~~~~~~~k~r~~l~~gtvliil~~~ng~~~~~v~~~~~~~ts~i~~~~vk   71 (152)
T KOG1694|consen    1 PHCSKNP----GIGR--PPADYPR---KKARYSAKPSKLRASLTPGTVLIILAPINGVPLKRVNERYVATTSKIDPSNVK   71 (152)
T ss_pred             CCcccCC----CCCC--Chhhccc---hhccccccchhhhhccCCCeeEEEecccCCcCcccccceEEeeeeeecccccc
Confidence            6899998    8888  8888887   3211     11     01110     233321    22  2233444554   


Q ss_pred             --CCCCCCCCCccCCCC----CCCCcccccccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecc
Q 029973           64 --FYPADDVKKPLVNKR----KPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQS  137 (184)
Q Consensus        64 --yYptedv~~~~~~~~----~~~~~klR~sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~  137 (184)
                        +|.+++........+    .++....+++..+.|......+.+.+.++++..++-.++..+.|+...+..++...++.
T Consensus        72 ~~e~~td~yf~K~k~~~~k~~e~~i~~~ekekyeIteq~kiDqKaVDs~il~~iK~ip~lk~yl~~~f~l~~g~~Ph~l~  151 (152)
T KOG1694|consen   72 IPEHLTDAYFKKKKLKKKKTQEGEIFAEEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLKKYLGSVFALTNGIYPHKLK  151 (152)
T ss_pred             ccccccHHHHhhhhccccccccchhhcccccccccchhhhhhHHHHHHHHHHHHhhchHhhhccchhhhccCCCCccccc
Confidence              557777655432222    35678889999999999999999999999999988888889999998888888887776


Q ss_pred             e
Q 029973          138 Y  138 (184)
Q Consensus       138 ~  138 (184)
                      |
T Consensus       152 f  152 (152)
T KOG1694|consen  152 F  152 (152)
T ss_pred             C
Confidence            5

>PRK00004 rplX 50S ribosomal protein L24; Reviewed

Probab=93.20  E-value=0.11  Score=39.94  Aligned_cols=63  Identities=33%  Similarity=0.455  Sum_probs=48.4

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeec-CCceEEEeccceecCccee-----eeecceEEeeeeEEecCCccc
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGVPLR-----RVNQSYVIGTSTKVDISGVNV  153 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL-~sglllVtGP~~lN~vPlr-----Rv~q~~VIaTstkidis~vki  153 (184)
                      .|.+|+.|.+++|.++|+.-.+++-+ .++-++|.|   +|-+...     .-++-=++....-|++|||.+
T Consensus         4 ~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Veg---vn~~k~h~k~~~~~~~G~i~~~e~pI~~SnV~l   72 (105)
T PRK00004          4 KIKKGDTVIVIAGKDKGKRGKVLKVLPKKNKVIVEG---VNIVKKHQKPNQENPQGGIIEKEAPIHISNVAL   72 (105)
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEcC---cEEEEEecCCCCCCCCCceEEEECCcCHHHEEE
Confidence            57899999999999999999999986 478899999   6643221     112345567777899999977

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle

Probab=92.58  E-value=0.18  Score=38.95  Aligned_cols=63  Identities=32%  Similarity=0.476  Sum_probs=49.2

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeecC-CceEEEeccceecCccee----eee--cceEEeeeeEEecCCccc
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLR----RVN--QSYVIGTSTKVDISGVNV  153 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL~-sglllVtGP~~lN~vPlr----Rv~--q~~VIaTstkidis~vki  153 (184)
                      .|..|+-+.+++|.++||.-.+++-+. .+.++|.|   +|-+.-+    ..+  +--++....-|++|||.+
T Consensus         3 ~ikkGD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Veg---vN~~kkh~k~~~~~~~~g~i~~~e~pI~~SnV~l   72 (104)
T TIGR01079         3 KIKKGDTVKVISGKDKGKRGKVLKVLPKTNKVIVEG---VNMVKKHVKPKPTQRSQGGIIEKEAPIHISNVML   72 (104)
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEECC---cEEEEEecCcccCCCCCCceEEEEccCCHHHeEE
Confidence            478999999999999999999999864 78899999   6643222    112  456677777899999976

This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.

>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]

Probab=92.23  E-value=0.27  Score=38.44  Aligned_cols=60  Identities=28%  Similarity=0.446  Sum_probs=47.3

Q ss_pred             cCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecc--------eEEeeeeEEecCCcccCc
Q 029973           89 ITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQS--------YVIGTSTKVDISGVNVDK  155 (184)
Q Consensus        89 itpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~--------~VIaTstkidis~vki~~  155 (184)
                      |.-|+.+++++|.++|+.-..|+-+... ++|.|      |-+...|++        =+|-.-.-|++|||.|-.
T Consensus         5 IrkGD~V~Vi~GkdKGk~GkVl~v~~k~-V~VEG------vnv~kkh~k~~~~~~~ggii~~EapIh~SnV~i~~   72 (104)
T COG0198           5 VKKGDTVKVIAGKDKGKEGKVLKVLPKK-VVVEG------VNVVKKHIKPSQENPEGGIINKEAPIHISNVAIID   72 (104)
T ss_pred             eecCCEEEEEecCCCCcceEEEEEecCe-EEEEC------cEEEEecCCCCCcCCCCceeeeeecccHHHeEEec
Confidence            5679999999999999999999999877 88877      445666666        245555678999997743

>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif

Probab=87.62  E-value=0.86  Score=25.83  Aligned_cols=24  Identities=33%  Similarity=0.499  Sum_probs=21.7

Q ss_pred             cCCCcEEEEeeceecCceEEEeee
Q 029973           89 ITPGTVLIILAGRFKGKRVVFLKQ  112 (184)
Q Consensus        89 itpGtvlIiL~Gr~~GKRvVfLKq  112 (184)
                      +.+|+.+.|+.|.|+|.-.++++.
T Consensus         2 ~~~G~~V~I~~G~~~g~~g~i~~i   25 (28)
T smart00739        2 FEVGDTVRVIAGPFKGKVGKVLEV   25 (28)
T ss_pred             CCCCCEEEEeECCCCCcEEEEEEE
Confidence            579999999999999999988875

Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.

>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=80.62  E-value=2.7  Score=25.50  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=23.0

Q ss_pred             CCcEEEEeeceecCceEEEeeecCCc
Q 029973           91 PGTVLIILAGRFKGKRVVFLKQLPSG  116 (184)
Q Consensus        91 pGtvlIiL~Gr~~GKRvVfLKqL~sg  116 (184)
                      +|+.+.|+.|+|+|.-..+++-..+.
T Consensus         1 ~Gd~V~V~~G~~~G~~G~I~~i~~~~   26 (32)
T PF00467_consen    1 VGDTVKVISGPFKGKIGKIVEIDRSK   26 (32)
T ss_dssp             TTSEEEESSSTTTTEEEEEEEEETTT
T ss_pred             CCCEEEEeEcCCCCceEEEEEEECCC
Confidence            68999999999999999999887654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	184
3izr_G	219	Localization Of The Large Subunit Ribosomal Protein		3e-57
4a18_E	191	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-34
3izs_G	176	Localization Of The Large Subunit Ribosomal Protein		8e-32
3zf7_v	192	High-resolution Cryo-electron Microscopy Structure		2e-21
2kds_A	95	Structure Of Ribosomal Protein L14e From Sulfolobus		5e-04
2joy_A	96	Nmr Structure Of 50s Ribosomal Protein L14e From Su		5e-04

>pdb|3IZR|G Chain G, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 219

Iteration: 1
 Score =  217 bits (552), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 109/165 (66%), Positives = 127/165 (76%), Gaps = 5/165 (3%)
Query: 19  GIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKR 78
           GI + SRS  YH+RGLWAIKAK+GG  P+ +              FYPADDVK   V+ R
Sbjct: 10  GIKRASRSHTYHRRGLWAIKAKHGGALPKAEKPAAIAEPK-----FYPADDVKPRTVSTR 64
Query: 79  KPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSY 138
           KP PTKLR++ITPGTVLI+LAGR+ GKRVVFLKQL SGLLL++GPFKINGVP+RRVNQ+Y
Sbjct: 65  KPHPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLQSGLLLITGPFKINGVPIRRVNQAY 124
Query: 139 VIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESEKEV 183
           VI TSTKVDIS VNV KFDDKYFA+E + + KK E E FES+KE 
Sbjct: 125 VIATSTKVDISKVNVQKFDDKYFAREKKTRAKKTEGELFESDKEA 169

>pdb|4A18|E Chain E, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 191

Iteration: 1
 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/122 (59%), Positives = 89/122 (72%), Gaps = 4/122 (3%)
Query: 64  FYPADDVKKPLVNK--RKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVS 121
           +Y ADD   P   +  +K   TKLR  I PGTVLI+LAGRF+GKRVVFLKQL SGLLLV+
Sbjct: 18  WYKADDEATPFHRRQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLKSGLLLVT 77
Query: 122 GPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKG--ENEFFES 179
           GP+K+NGVPL+RVNQ+Y + TSTKVD++GVN  KF+D YF +E  RK  K   + E  E 
Sbjct: 78  GPYKVNGVPLKRVNQAYTLSTSTKVDLTGVNTAKFEDDYFGREKARKNHKNLFKAELTEE 137
Query: 180 EK 181
           +K
Sbjct: 138 QK 139

>pdb|3IZS|G Chain G, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 176

Iteration: 1
 Score =  132 bits (333), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 62/99 (62%), Positives = 78/99 (78%)
Query: 64  FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGP 123
           +YP++DV      ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L    LL+SGP
Sbjct: 9   WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGP 68
Query: 124 FKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFA 162
           FK+NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFA
Sbjct: 69  FKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFA 107

>pdb|3ZF7|VV Chain v, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 192

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Query: 75  VNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRR 133
           V+++ P+ + +R S  PGT+ IILAGRF+G+R V LKQLP +G L++SGP K +GVP+RR
Sbjct: 16  VSRKSPEYSTVRKSCKPGTIAIILAGRFRGRRAVILKQLPKNGPLVISGPMKYSGVPIRR 75
Query: 134 VNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFF 177
           ++  Y+I TST+VD++GV+      + F +E + K+ K E EF 
Sbjct: 76  IDSRYIIATSTRVDLTGVDTSAITPEIFKREKKEKRVKSEGEFM 119

>pdb|2KDS|A Chain A, Structure Of Ribosomal Protein L14e From Sulfolobus Solfataricus Length = 95

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 88  SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
           +I  G + + + GR  G + V +  +    +LV+GP  I GV  RRVN  ++  T  K+D
Sbjct: 2   AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKID 61
Query: 148 ISGVNVDKFDDKYFAKEVERKKKKGENEFFESEKE 182
           I          +  A + E KKK  E+   E  KE
Sbjct: 62  I----------QKGASDEEVKKKLEESNLTEYMKE 86

>pdb|2JOY|A Chain A, Nmr Structure Of 50s Ribosomal Protein L14e From Sulfolobus Solfataricus: Northeast Structural Genomics Consortium Target Ssr105 Length = 96

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 88  SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
           +I  G + + + GR  G + V +  +    +LV+GP  I GV  RRVN  ++  T  K+D
Sbjct: 3   AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKID 62
Query: 148 ISGVNVDKFDDKYFAKEVERKKKKGENEFFESEKE 182
           I          +  A + E KKK  E+   E  KE
Sbjct: 63  I----------QKGASDEEVKKKLEESNLTEYMKE 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
3iz5_G	219	60S ribosomal protein L6 (L6E); eukaryotic ribosom	5e-64
3izc_G	176	60S ribosomal protein RPL6 (L6E); eukaryotic ribos	1e-48
4a18_E	191	RPL6; ribosome, eukaryotic initiation factor 6, EI	2e-43
2joy_A	96	50S ribosomal protein L14E; protein solution struc	6e-23

>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E Length = 191

 Score =  142 bits (358), Expect = 2e-43
 Identities = 72/128 (56%), Positives = 91/128 (71%), Gaps = 2/128 (1%)

Query: 57  PAEKPPKFYPADDVKKPLVNKR--KPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLP 114
              K  K+Y ADD   P   ++  K   TKLR  I PGTVLI+LAGRF+GKRVVFLKQL 
Sbjct: 11  GVSKISKWYKADDEATPFHRRQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLK 70

Query: 115 SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGEN 174
           SGLLLV+GP+K+NGVPL+RVNQ+Y + TSTKVD++GVN  KF+D YF +E  RK  K   
Sbjct: 71  SGLLLVTGPYKVNGVPLKRVNQAYTLSTSTKVDLTGVNTAKFEDDYFGREKARKNHKNLF 130

Query: 175 EFFESEKE 182
           +   +E++
Sbjct: 131 KAELTEEQ 138

>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A Length = 96

 Score = 86.8 bits (215), Expect = 6e-23
 Identities = 24/85 (28%), Positives = 39/85 (45%)

Query: 87  ASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKV 146
            +I  G + + + GR  G + V +  +    +LV+GP  I GV  RRVN  ++  T  K+
Sbjct: 2   PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKI 61

Query: 147 DISGVNVDKFDDKYFAKEVERKKKK 171
           DI     D+   K   +    +  K
Sbjct: 62  DIQKGASDEEVKKKLEESNLTEYMK 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
3iz5_G	219	60S ribosomal protein L6 (L6E); eukaryotic ribosom	100.0
3izc_G	176	60S ribosomal protein RPL6 (L6E); eukaryotic ribos	100.0
4a18_E	191	RPL6; ribosome, eukaryotic initiation factor 6, EI	100.0
2joy_A	96	50S ribosomal protein L14E; protein solution struc	99.79
4a18_N	144	RPL27, ribosomal protein L22; ribosome, eukaryotic	99.49
3j21_5	83	50S ribosomal protein L14E; archaea, archaeal, KIN	99.19
3izc_N	138	60S ribosomal protein RPL14 (L14E); eukaryotic rib	99.03
3izc_a	136	60S ribosomal protein RPL27 (L27E); eukaryotic rib	99.02
3iz5_a	136	60S ribosomal protein L27 (L27E); eukaryotic ribos	98.95
3iz5_N	134	60S ribosomal protein L14 (L14E); eukaryotic ribos	98.69
4a18_F	126	RPL14; ribosome, eukaryotic initiation factor 6, E	98.41
2zjr_R	115	50S ribosomal protein L24; ribosome, large ribosom	95.77
3r8s_U	102	50S ribosomal protein L24; protein biosynthesis, R	94.99
2zkr_t	145	60S ribosomal protein L26; protein-RNA complex, 60	94.75
3j21_U	121	50S ribosomal protein L24P; archaea, archaeal, KIN	94.51
1vq8_T	120	50S ribosomal protein L24P; ribosome 50S, protein-	94.4
3v2d_Y	110	50S ribosomal protein L24; ribosome associated inh	94.33
2ftc_N	96	Mitochondrial ribosomal protein L24; mitochondrial	93.62
3u5e_Y	127	L33, YL33, 60S ribosomal protein L26-A; translatio	93.39
3iz5_Y	150	60S ribosomal protein L26 (L24P); eukaryotic ribos	92.94
4a17_S	135	RPL26, 60S ribosomal protein L21; eukaryotic ribos	91.56
3bbo_W	191	Ribosomal protein L24; large ribosomal subunit, sp	88.57
2do3_A	69	Transcription elongation factor SPT5; KOW motif, s	82.87

>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E

Probab=100.00  E-value=4.4e-52  Score=346.20  Aligned_cols=120  Identities=59%  Similarity=1.012  Sum_probs=114.1

Q ss_pred             cCCCCCCCCCCCCCCccCCC--CCCCCcccccccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeee
Q 029973           58 AEKPPKFYPADDVKKPLVNK--RKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVN  135 (184)
Q Consensus        58 l~k~p~yYptedv~~~~~~~--~~~~~~klR~sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~  135 (184)
                      .+|||+||||||+|+++.++  +++|+++||+||+||||||||+|||+||||||||||+|||||||||++||+|||+|+|
T Consensus        12 ~~k~p~~YPtedv~~~~~~~~~~~~~~~klr~si~pGtVlIiL~Gr~~GKrvV~LKql~sgllLVtGP~~vn~vplrrvn   91 (191)
T 4a18_E           12 VSKISKWYKADDEATPFHRRQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLKSGLLLVTGPYKVNGVPLKRVN   91 (191)
T ss_dssp             TTSHHHHCCCCCSCCCCCCTTTTTCCCCCCCTTCCTTEEEEECSSTTTTBEEEEEEECTTSCEEEECCTTTSSCCSEEEC
T ss_pred             cccccccCCcccccccccccccccccchhhhccccCCCEEEEeccccCCCEEEEEEecCCCeEEEecCccccCCceEEEe
Confidence            46999999999999987776  6899999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEeeeeEEecCCcccCccChHhhhhhhhhhhccccccccccc
Q 029973          136 QSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESE  180 (184)
Q Consensus       136 q~~VIaTstkidis~vki~~l~D~YFkk~k~~k~~~~e~eiF~~~  180 (184)
                      |+|||||||+||||||++++|||+||++++   ++++|+|||+++
T Consensus        92 ~~~vi~TstkvDis~vki~~~~d~YF~k~k---~k~~e~eiF~~~  133 (191)
T 4a18_E           92 QAYTLSTSTKVDLTGVNTAKFEDDYFGREK---ARKNHKNLFKAE  133 (191)
T ss_dssp             GGGEEEEEEECCCTTCCGGGCCGGGSCCCC---CCCCTTTTSCCC
T ss_pred             eeeEEeeeeEeecccccccccCHHHhcccc---cccchhhhhccc
Confidence            999999999999999999999999999764   489999999887

>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A

Probab=99.79  E-value=7.3e-20  Score=137.17  Aligned_cols=73  Identities=32%  Similarity=0.479  Sum_probs=67.9

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeEEecCCcccCccChHhhhhh
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKE  164 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki~~l~D~YFkk~  164 (184)
                      +++||+|+|+++|+|+|+++|||+++++|++||+||...|++|++++|++|+++|++++|++    ..++|+||++.
T Consensus         3 ~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~~vLV~gp~~~~~~~rk~~n~khl~~T~~~vdi~----~~~~~~~vrka   75 (96)
T 2joy_A            3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQ----KGASDEEVKKK   75 (96)
T ss_dssp             SSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECCCC----SSCCHHHHHHH
T ss_pred             ccccCEEEEEeecCCCCCEEEEEEEeCCCEEEEECCcccCCcCCEEEchHHEEEeeEEEeCC----CCCChHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999842    24899999864

>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N

Probab=99.49  E-value=8.3e-15  Score=117.60  Aligned_cols=73  Identities=29%  Similarity=0.437  Sum_probs=63.1

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeecCC-------ceEEEec----cceecC-------cceee-------eecceEEee
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQLPS-------GLLLVSG----PFKING-------VPLRR-------VNQSYVIGT  142 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL~s-------glllVtG----P~~lN~-------vPlrR-------v~q~~VIaT  142 (184)
                      -++||+|+|+|+|+|+|++||+||++++       |.+||+|    |.++++       ++..+       +|.+|+++|
T Consensus         4 f~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl~pT   83 (144)
T 4a18_N            4 FLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIMPT   83 (144)
T ss_dssp             CCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGEEEE
T ss_pred             cccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeEEEe
Confidence            4789999999999999999999999999       8999999    999999       88888       999999999


Q ss_pred             eeEE--ecCCcccCccChHhhh
Q 029973          143 STKV--DISGVNVDKFDDKYFA  162 (184)
Q Consensus       143 stki--dis~vki~~l~D~YFk  162 (184)
                      ++.|  ||+ ++ .-++++-|+
T Consensus        84 ry~v~~di~-lK-~~v~~d~~~  103 (144)
T 4a18_N           84 RYSVKELCD-FK-ELVKEDKIK  103 (144)
T ss_dssp             EEECSTTCC-HH-HHSCHHHHH
T ss_pred             eEEeeccCc-hh-hccCHHHhh
Confidence            9999  875 22 115555553

>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.19  E-value=1.5e-11  Score=90.19  Aligned_cols=70  Identities=29%  Similarity=0.472  Sum_probs=61.3

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeEEecCCcccCccChHhhh
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFA  162 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki~~l~D~YFk  162 (184)
                      .+.+|.++++++|+++|+.+|+++.++++.+||+|| .+++||.++.|.+|+..|+.+|+++.    ..+|++-+
T Consensus         3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~vlV~g~-~~~~v~rk~kn~khl~lt~~~i~~~~----~~~~~~vr   72 (83)
T 3j21_5            3 AIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHIEPLPQKIDIPR----GASDEEVR   72 (83)
T ss_dssp             CCCTTEEEECSSSSSSCCCEEEEEECSSSCEEEECC-TTTTCCCEEESCSSCEEEEEECCCCS----SCCTTTSH
T ss_pred             ccccCEEEEEeecCCCCCEEEEEEEcCCCEEEEECC-ccCccCCeEechHHEEEeeEEEECCC----CCChHHHH
Confidence            478999999999999999999999999999999999 67999999999999999999987532    25555554

>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7

Probab=98.41  E-value=2.5e-07  Score=72.74  Aligned_cols=58  Identities=22%  Similarity=0.284  Sum_probs=54.5

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeEEe-cC
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD-IS  149 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~~VIaTstkid-is  149 (184)
                      -+.+|.|++++.|+++||.+|++..+|.+.+||.||-    ||.+.+|-+++..|..+|| |.
T Consensus         6 fvevGRVv~i~~G~~aGklavIVdIID~nrvLVdGp~----V~Rq~~n~k~l~LT~~~v~~i~   64 (126)
T 4a18_F            6 FVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGEH----IVRQVIPIRRVHLTKFQIDNVE   64 (126)
T ss_dssp             EEETTEEEEECSSTTTTEEEEEEEEETTTEEEEEETT----EEEEEEEGGGEEEEEEECTTCC
T ss_pred             ceecceEEEEccCCccCCEEEEEEEecCCeEEEeCCC----cccceeeccceEEcceeccccC
Confidence            4679999999999999999999999999999999996    9999999999999999997 63

>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V

Probab=95.77  E-value=0.0068  Score=46.54  Aligned_cols=67  Identities=25%  Similarity=0.327  Sum_probs=50.9

Q ss_pred             CcccccccCCCcEEEEeeceecCceEEEeeec-CCceEEEeccceecCc-----ceeeeecceEEeeeeEEecCCccc
Q 029973           82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGV-----PLRRVNQSYVIGTSTKVDISGVNV  153 (184)
Q Consensus        82 ~~klR~sitpGtvlIiL~Gr~~GKRvVfLKqL-~sglllVtGP~~lN~v-----PlrRv~q~~VIaTstkidis~vki  153 (184)
                      .+++  .|..|+.+++++|.++|++-.+|+-+ ..+-++|.|   +|-+     |-..-.|-=++....-|++|||.+
T Consensus        11 ~rkm--~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEG---vN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~l   83 (115)
T 2zjr_R           11 NDKL--HFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEG---VNVITKNVKPSMTNPQGGQEQRELALHASKVAL   83 (115)
T ss_dssp             TSCC--SSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESS---SCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEEC
T ss_pred             ceeC--cccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC---cEeEEEecCCCcCCCCCCEEEEEcccCHHHEEE
Confidence            3455  58899999999999999999999987 478999999   7765     221122334455566789999987

>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...

Probab=94.99  E-value=0.035  Score=41.82  Aligned_cols=63  Identities=29%  Similarity=0.414  Sum_probs=49.2

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceee------eecceEEeeeeEEecCCccc
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRR------VNQSYVIGTSTKVDISGVNV  153 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrR------v~q~~VIaTstkidis~vki  153 (184)
                      -|..|+-+++++|.++||.-..|+-+..+-++|.|   +|-+--.-      -.|-=+|....-|++|||.+
T Consensus         3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ViVeG---vN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~l   71 (102)
T 3r8s_U            3 KIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEG---INLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAI   71 (102)
T ss_dssp             SSCSSCEEEECSSSSTTCEEEEEEEETTTEEEETT---CSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEE
T ss_pred             CccCCCEEEEeEcCCCCeeeEEEEEEeCCEEEEeC---eEEEEeccccCcccCCCCCEEEEECCcCHHHEEE
Confidence            37789999999999999999999988669999999   66432221      23344666667899999977

>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=94.75  E-value=0.022  Score=45.55  Aligned_cols=64  Identities=14%  Similarity=0.250  Sum_probs=48.2

Q ss_pred             ccCCCcEEEEeeceecCce-EEEeeec-CCceEEEeccceecCcceeeeecceEEeeeeEEecCCccc--CccChHh
Q 029973           88 SITPGTVLIILAGRFKGKR-VVFLKQL-PSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDDKY  160 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKR-vVfLKqL-~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki--~~l~D~Y  160 (184)
                      .|..|+.|+|++|.++|+. -.+++-+ ..+-++|.|   ||-   .+.+-   +....-|++|||.|  ++++++-
T Consensus        48 ~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEg---vn~---~Kp~G---~~~e~PIh~SNV~lv~~~~~k~~  115 (145)
T 2zkr_t           48 PIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIER---VQR---EKANG---TTVHVGIHPSKVVITRLKLDKDR  115 (145)
T ss_dssp             BCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETT---CEE---ECSSC---CEEECCBCGGGEEECC-CCCHHH
T ss_pred             ccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEee---eEe---EcCCC---ceEEeccCHHHEEEEcCcCCchH
Confidence            4889999999999999999 8888876 478899998   663   33332   34445689999988  3566654

>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=94.51  E-value=0.034  Score=43.11  Aligned_cols=63  Identities=17%  Similarity=0.188  Sum_probs=48.6

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeecC-CceEEEeccceecCcceeeeecceEEeeeeEEecCCccc--CccChH
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDDK  159 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL~-sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki--~~l~D~  159 (184)
                      .|..|+.|++++|.++|+.-.+++-+. .+-++|.|   +|-+-   .|.   +....-|++|||.|  +.++|.
T Consensus        45 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEg---vn~~k---~~G---~~~e~pIh~SNV~l~~~~~~d~  110 (121)
T 3j21_U           45 PVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEG---ATLRK---TNG---TEVFYPIHPSNVMIIELNLEDE  110 (121)
T ss_dssp             ECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETT---CEEEC---SSS---CEEECCBCGGGEEEEECCCCCH
T ss_pred             ccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeC---eEEEe---cCC---cEEEcccCHHHeEEEcCccCCc
Confidence            477899999999999999999999874 78999999   66432   233   34456799999988  456554

>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...

Probab=94.40  E-value=0.035  Score=43.03  Aligned_cols=63  Identities=17%  Similarity=0.327  Sum_probs=48.0

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeec-CCceEEEeccceecCcceeeeecceEEeeeeEEecCCccc--CccChH
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDDK  159 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL-~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki--~~l~D~  159 (184)
                      .|..|+.|++++|.+.|+.--+++-+ ..+-++|.|   +|-   .+.+-.   ..-.-|++|||.|  ++++++
T Consensus        42 ~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEg---vn~---kK~~Gg---~~e~pIh~SNV~i~~~~~~k~  107 (120)
T 1vq8_T           42 RVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVED---VTL---EKTDGE---EVPRPLDTSNVRVTDLDLEDE  107 (120)
T ss_dssp             ECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT---CEE---ECSSSC---EEECCBCGGGEEEEECCCCCH
T ss_pred             cccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeC---eEe---EcCCCC---EEEeeechHHEEEEeccCCCc
Confidence            48899999999999999999999987 478899998   653   333333   3344689999988  456554

>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...

Probab=94.33  E-value=0.032  Score=42.57  Aligned_cols=63  Identities=22%  Similarity=0.349  Sum_probs=49.3

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeecC-CceEEEeccceecCccee-----eeecceEEeeeeEEecCCccc
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLR-----RVNQSYVIGTSTKVDISGVNV  153 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL~-sglllVtGP~~lN~vPlr-----Rv~q~~VIaTstkidis~vki  153 (184)
                      .|..|+-+++++|.++||.-..|+-+. .+-++|.|   +|-+--+     .-.+-=++....-|++|||.+
T Consensus         6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEG---vN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~l   74 (110)
T 3v2d_Y            6 HVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEG---VNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRP   74 (110)
T ss_dssp             SCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETT---SSEEEEECCSSSSSTTCCEEEEECCEEGGGEEE
T ss_pred             ccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeC---EEEEEEEeCCCccCCCCCEEEEECCcCHHHeEE
Confidence            477899999999999999999999875 68999999   6653211     112445677777999999987

>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N

Probab=93.62  E-value=0.059  Score=40.15  Aligned_cols=58  Identities=19%  Similarity=0.255  Sum_probs=44.8

Q ss_pred             CcEEEEeeceecCceEEEeeec-CCceEEEeccceecCc-----ceeeeecceEEeeeeEEecCCccc
Q 029973           92 GTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGV-----PLRRVNQSYVIGTSTKVDISGVNV  153 (184)
Q Consensus        92 GtvlIiL~Gr~~GKRvVfLKqL-~sglllVtGP~~lN~v-----PlrRv~q~~VIaTstkidis~vki  153 (184)
                      |+-+++++|.++||.--.|+-+ ..+-++|.|   +|-+     |-. -.|-=++....-|++|||.+
T Consensus         1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeG---vN~~kkh~kp~~-~~~Ggiv~~e~pIh~SNV~l   64 (96)
T 2ftc_N            1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGG---LNTHYRYIGKTM-DYRGTMIPSEAPLLHRQVKL   64 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC---CEEEEEEcCCCC-CCCCCEEEEecCcCHHHEEE
Confidence            6789999999999999999987 478999999   7754     221 22345666667889999977

>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U

Probab=93.39  E-value=0.15  Score=39.94  Aligned_cols=62  Identities=16%  Similarity=0.182  Sum_probs=47.7

Q ss_pred             cCCCcEEEEeeceecCceEEEeeecC-CceEEEeccceecCcceeeeecceEEeeeeEEecCCccc--CccChH
Q 029973           89 ITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDDK  159 (184)
Q Consensus        89 itpGtvlIiL~Gr~~GKRvVfLKqL~-sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki--~~l~D~  159 (184)
                      |.-|+.|++++|.+.|+.--+|+-+. .+-++|.|   +|-+   ..|..-+   -.-|++|||.|  +++++.
T Consensus        50 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEg---Vn~~---K~~G~~~---e~pIh~SNV~i~~~~~dk~  114 (127)
T 3u5e_Y           50 IRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDK---VTKE---KVNGASV---PINLHPSKLVITKLHLDKD  114 (127)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEET---CEEE---CSSSCEE---ECCBCGGGEEEEECCCCHH
T ss_pred             ccCCCEEEEeecCCCCccceEEEEECCCCEEEEeC---eEEE---CCCCcEE---EcccchHHEEEEccccCcH
Confidence            66899999999999999999999876 58999999   5543   3344322   34699999998  457654

>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S

Probab=91.56  E-value=0.24  Score=39.17  Aligned_cols=61  Identities=18%  Similarity=0.259  Sum_probs=47.0

Q ss_pred             cCCCcEEEEeeceecCceEEEeeecC-CceEEEeccceecCcceeeeecceEEeeeeEEecCCccc--CccCh
Q 029973           89 ITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDD  158 (184)
Q Consensus        89 itpGtvlIiL~Gr~~GKRvVfLKqL~-sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki--~~l~D  158 (184)
                      |.-|+.|++++|.+.|+.--+|+-+. .+-++|.|   ||-+   ..|..   ..-.-|++|||.|  +++++
T Consensus        49 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEg---Vn~~---K~~G~---~~e~pIh~SNV~i~~~k~dk  112 (135)
T 4a17_S           49 VRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEK---ISKN---KLNGA---PYQIPLSASQLVLTKLKLDK  112 (135)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT---CCEE---ETTTE---EECCCBCGGGEEEEECCCCH
T ss_pred             ccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeC---eEEE---cCCCC---EEEcccchHHEEEEcccCCc
Confidence            67899999999999999999999875 58899988   5543   33442   2344789999998  45654

>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=88.57  E-value=0.043  Score=45.73  Aligned_cols=63  Identities=17%  Similarity=0.200  Sum_probs=47.4

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeec-CCceEEEeccceecCccee-----eeecceEEeeeeEEecCCccc
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGVPLR-----RVNQSYVIGTSTKVDISGVNV  153 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL-~sglllVtGP~~lN~vPlr-----Rv~q~~VIaTstkidis~vki  153 (184)
                      .|..|+-|++++|.++||.-.+|+-+ ..+-++|.|   +|-+--+     .-.|-=+|....-|++|||.+
T Consensus        68 kIkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVEG---VN~vkKH~Kp~~~~~~GgIv~kEaPIhiSNV~L  136 (191)
T 3bbo_W           68 HVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKD---LNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVML  136 (191)
T ss_dssp             CSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSS---CCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEE
T ss_pred             eeecCCEEEEeecCCCCceEEEEEEECCCCEEEEeC---CEEEEEecCCcccCCCCCEEEEecCcCHHHeEE
Confidence            48899999999999999999999887 468899999   7765321     111334554556788999877

>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5

Probab=82.87  E-value=1.9  Score=30.46  Aligned_cols=40  Identities=25%  Similarity=0.429  Sum_probs=33.4

Q ss_pred             CcccccccCCCcEEEEeeceecCceEEEeeecCCceEEEe
Q 029973           82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVS  121 (184)
Q Consensus        82 ~~klR~sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVt  121 (184)
                      ...||+-+.+|+-+-++.|+|+|.--.+++.-++-..+++
T Consensus        11 ~~~LrK~F~~GDHVkVi~G~~~getGlVV~v~~d~v~v~S   50 (69)
T 2do3_A           11 AQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFS   50 (69)
T ss_dssp             CCCCCSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEE
T ss_pred             HHHceeeccCCCeEEEeccEEcCceEEEEEEeCCEEEEEe
Confidence            5678999999999999999999998888888766555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d2joya1	96	b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolob	2e-24

>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L14e
domain: Ribosomal protein L14e
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 89.8 bits (223), Expect = 2e-24
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 87  ASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKV 146
            +I  G + + + GR  G + V +  +    +LV+GP  I GV  RRVN  ++  T  K+
Sbjct: 2   PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKI 61

Query: 147 DIS-GVNVDKFDDKYFAKEVERKKKKGE 173
           DI  G + ++   K     +    K+  
Sbjct: 62  DIQKGASDEEVKKKLEESNLTEYMKEKI 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d2joya1	96	Ribosomal protein L14e {Sulfolobus solfataricus [T	99.84
d2gycs1	99	Ribosomal proteins L24 (L24p) {Escherichia coli [T	94.38
d1vqot1	119	Ribosomal proteins L24 (L24p) {Archaeon Haloarcula	93.95
d2zjrr1	110	Ribosomal proteins L24 (L24p) {Deinococcus radiodu	92.04
d2j01y1	101	Ribosomal proteins L24 (L24p) {Thermus thermophilu	88.91
d2do3a1	62	Transcription elongation factor SPT5 {Human (Homo	88.53

>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L14e
domain: Ribosomal protein L14e
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.84  E-value=9e-22  Score=146.77  Aligned_cols=74  Identities=31%  Similarity=0.467  Sum_probs=68.0

Q ss_pred             cccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeEEecCCcccCccChHhhhhh
Q 029973           87 ASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKE  164 (184)
Q Consensus        87 ~sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki~~l~D~YFkk~  164 (184)
                      +++++|+|+|++.|+|+||+||+|+++++|++||+||+.+||||++|+|++|+++|+++|||+.    ..++.++++.
T Consensus         2 ~~VevGrV~ii~~G~~~GK~~vIvdiid~~rvLVdGP~~~tgV~r~~in~k~l~lT~~~i~i~~----~a~~~~v~ka   75 (96)
T d2joya1           2 PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQK----GASDEEVKKK   75 (96)
T ss_dssp             CSSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECCCCS----SCCHHHHHHH
T ss_pred             CceeccEEEEEeecCCCCCEEEEEEEecCCeEEEecccccCCcccEEEchHHEEeccEEEEccC----CCCcHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999997531    3788899754

>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.0086  Score=43.22  Aligned_cols=62  Identities=32%  Similarity=0.474  Sum_probs=48.6

Q ss_pred             cCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCccee-e-e---e-cceEEeeeeEEecCCccc
Q 029973           89 ITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLR-R-V---N-QSYVIGTSTKVDISGVNV  153 (184)
Q Consensus        89 itpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlr-R-v---~-q~~VIaTstkidis~vki  153 (184)
                      |..|+-+++++|.++||.-.+|+-++.+-++|.|   +|-+--+ + .   + +-=++....-|++|||.+
T Consensus         2 ikkGD~V~VisGkdKGK~G~V~~V~~~~~viVeG---vN~~kkh~Kp~~~~~~~Ggiv~~E~pIh~SNV~l   69 (99)
T d2gycs1           2 IRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEG---INLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAI   69 (99)
T ss_dssp             CCTTSEEECSSSTTTTCEEEEEEECTTSEEEETT---CCEECTTCCEECCCSCCCSSCCCSCCEETTTCCS
T ss_pred             ccCCCEEEEeeCCCCCCceEEEEEECCCeEEEeC---eEEEEEEeCCCCCcCCCCCEEEEEeeEEhhHEEE
Confidence            5679999999999999999999999988999999   7754322 1 1   1 223566677899999976

>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=93.95  E-value=0.026  Score=41.84  Aligned_cols=63  Identities=19%  Similarity=0.353  Sum_probs=49.0

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeecC-CceEEEeccceecCcceeeeecceEEeeeeEEecCCccc--CccChH
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDDK  159 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL~-sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki--~~l~D~  159 (184)
                      .|.-|+.|.|++|.|.|+.--+|+-+. ++-++|.|   ||   +..-|+.-   .-.-|++|||.|  +..+|.
T Consensus        41 ~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~V~Veg---in---~~k~~~k~---~~~pIh~SNv~i~~~~~~~~  106 (119)
T d1vqot1          41 RVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVED---VT---LEKTDGEE---VPRPLDTSNVRVTDLDLEDE  106 (119)
T ss_dssp             ECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT---CE---EECTTSCE---EECCBCGGGEEEEECCCCSH
T ss_pred             ceeCCCEEEEeecCCCCCcceEEEEECCCCEEEEeC---cE---EEecCCce---eeccCchHHEEEEeCcCCcc
Confidence            367899999999999999999999864 78999999   55   34445553   344799999988  456665

>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.04  E-value=0.046  Score=39.90  Aligned_cols=62  Identities=24%  Similarity=0.373  Sum_probs=48.2

Q ss_pred             cCCCcEEEEeeceecCceEEEeeecC-CceEEEeccceecCccee-e---eec-ceEEeeeeEEecCCccc
Q 029973           89 ITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLR-R---VNQ-SYVIGTSTKVDISGVNV  153 (184)
Q Consensus        89 itpGtvlIiL~Gr~~GKRvVfLKqL~-sglllVtGP~~lN~vPlr-R---v~q-~~VIaTstkidis~vki  153 (184)
                      |.-|+-|++++|.++||.-.+|+-+. .+-++|.|   ||-+--+ +   -++ --+|....-|++|||.+
T Consensus        13 ikkGD~V~VisGkdKGk~G~Vl~V~~~~~~ViVeG---vN~~kkh~Kp~~~~~~Ggiv~~E~PIhiSNV~l   80 (110)
T d2zjrr1          13 FKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEG---VNVITKNVKPSMTNPQGGQEQRELALHASKVAL   80 (110)
T ss_dssp             SCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESS---SCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEEC
T ss_pred             eeCCCEEEEeecCCCCcceEEEEEECCCCEEEEeC---cEEEEEEecccccCCCCCeEeeeeeEEhhhEEE
Confidence            56799999999999999999999985 78999999   7765432 1   122 23555566799999976

>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Thermus thermophilus [TaxId: 274]

Probab=88.91  E-value=0.012  Score=42.44  Aligned_cols=63  Identities=25%  Similarity=0.393  Sum_probs=48.0

Q ss_pred             ccCCCcEEEEeeceecCceEEEeeecC-CceEEEeccceecCccee-eee----cceEEeeeeEEecCCccc
Q 029973           88 SITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLR-RVN----QSYVIGTSTKVDISGVNV  153 (184)
Q Consensus        88 sitpGtvlIiL~Gr~~GKRvVfLKqL~-sglllVtGP~~lN~vPlr-Rv~----q~~VIaTstkidis~vki  153 (184)
                      .|.-|+.+++++|.++|+.-.+|+-+. .+.++|.|   +|-+--+ +.+    +--++.-..-|++|||.+
T Consensus         5 kIkkGD~V~VisGkdKGk~G~Vl~V~~~~~~ViVeG---vN~~kkh~k~~~~~~~Ggi~~~E~pIh~SNV~l   73 (101)
T d2j01y1           5 HVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEG---VNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRP   73 (101)
T ss_dssp             CSCCSSCEECCSSTTSSCCBSCCCCCCTTCBCCTTS---CCCCCCCCCSCCCSSCCCSSCCCCCCBGGGCEE
T ss_pred             EEECCCEEEEeeCCCCCCeEEEEEEECCCCEEEEEc---ceEEEEeecCCCCCCccceEEEEccccHHHeEE
Confidence            467899999999999999999999986 68999999   7754322 111    223555566899999975

>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: SPT5 KOW domain-like
domain: Transcription elongation factor SPT5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.53  E-value=0.31  Score=32.27  Aligned_cols=40  Identities=25%  Similarity=0.429  Sum_probs=33.8

Q ss_pred             CcccccccCCCcEEEEeeceecCceEEEeeecCCceEEEe
Q 029973           82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVS  121 (184)
Q Consensus        82 ~~klR~sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVt  121 (184)
                      ...||+-+.+|+-+-++.|+|+|.--.+++.-++-.++.+
T Consensus         4 ~~~LrK~F~~GDhVkVi~G~~~g~tGlVV~v~~~~v~~~S   43 (62)
T d2do3a1           4 AQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFS   43 (62)
T ss_dssp             CCCCCSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEE
T ss_pred             hHHheeccCCCCeEEEeccEEcCccEEEEEEeCCEEEEEe
Confidence            4578999999999999999999999988888666555554