Citrus Sinensis ID: 029976

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcHHHHHHHcccccccccccccccccccccccccccEEEHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccHccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MAASLATQSMLGSSVVAARVTGIRKSGvyqfssvkylpgtlqrnvsLSVRCMakneqqkdqstqppklpristkfsdvfafsgpaperiNGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTSVLLSVASLVplfkgvsvesksdgfmtsdAELWNGRFAMMGLVALAVTEFVKGSTLV
Flexible Loop (DISEMBL)
maaslatqsmlgsSVVAARVTGIRKSGvyqfssvkylpgtLQRNVSLSVRCMAKneqqkdqstqppklpriSTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTSVLLSVASLVPLFKGvsvesksdgFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV
Low Complexity Region (SEG)
MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTsvllsvaslvPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV
Disordered region (IsUnstruct)
*************SVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRC***********************FSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVK*****
Disordered Region (DISOPRED)
**************************************************************************FSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTSVLLSVASLVPL*******SKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV
Disordered Region (DISEMBL)
*************SVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMA**************LPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV
Disordered Region (DISPRO)
*********************************VKYL******NVSLSV*C*********************TKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
P11432	196	Early light-induced prote	N/A	no	0.902	0.846	0.597	5e-53
Q01931	199	Desiccation stress protei	N/A	no	0.782	0.723	0.490	2e-37
P14897	172	Low molecular mass early	N/A	no	0.755	0.808	0.528	1e-35
P14895	231	High molecular mass early	N/A	no	0.663	0.528	0.581	9e-34
P14896	167	Low molecular mass early	N/A	no	0.836	0.922	0.493	2e-32
P27516	172	Carotene biosynthesis-rel	N/A	no	0.554	0.593	0.518	1e-17

>sp|P11432|ELI_PEA Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1

 Score =  207 bits (526), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 116/194 (59%), Positives = 142/194 (73%), Gaps = 28/194 (14%)

Query: 14  SVVAARVTGIR-KSGVYQFSSVK--YLPGTLQRNVSLSVRCMAKNEQQKDQS-------- 62
           S+++  +T I  +S V QF+++   Y+P TL+RNVSL VR MA+ E  K+QS        
Sbjct: 8   SIMSNSMTNISSRSRVNQFTNIPSVYIP-TLRRNVSLKVRSMAEGEP-KEQSKVAVDPTT 65

Query: 63  ------------TQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQ 110
                       T+PPK+   STKFSD+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ
Sbjct: 66  PTASTPTPQPAYTRPPKM---STKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQ 122

Query: 111 DVFAQLSDGGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLV 170
            +  QLS GGVAWFLGTSVLLS+ASL+P F+GVSVESKS   M+SDAE WNGR AM+GLV
Sbjct: 123 GLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLV 182

Query: 171 ALAVTEFVKGSTLV 184
           ALA TEFVKG++LV
Sbjct: 183 ALAFTEFVKGTSLV 196

Probably involved in the integration of pigments into the mature pigment-protein complexes.
Pisum sativum (taxid: 3888)

>sp|Q01931|DS22_CRAPL Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1

 Score =  154 bits (390), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 108/157 (68%), Gaps = 13/157 (8%)

Query: 41  LQRNVSLSVRCMAKNE------------QQKDQSTQPPKLPRISTKFS-DVFAFSGPAPE 87
           ++RN   +VR M ++                      P    ++TK + D+F+F G APE
Sbjct: 41  MRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPE 100

Query: 88  RINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTSVLLSVASLVPLFKGVSVES 147
           RINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+
Sbjct: 101 RINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEA 160

Query: 148 KSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 184
           K++GF  SDAE+WNGRFAM+GLVALA TE+VKG  L+
Sbjct: 161 KNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197

Possibly exerts a protective role during water loss.

Craterostigma plantagineum (taxid: 4153)

>sp|P14897|ELI9_HORVU Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1

 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/140 (52%), Positives = 93/140 (66%), Gaps = 1/140 (0%)

Query: 46  SLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVE 105
           +L  R +    Q +  S  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE
Sbjct: 31  ALGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVE 90

Query: 106 LSKGQDVFAQLSDG-GVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRF 164
             +G  + +QL  G G AWF  T  +LS+ASLVPL +G S E ++   M ++AELWNGRF
Sbjct: 91  AGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRF 150

Query: 165 AMMGLVALAVTEFVKGSTLV 184
           AM+GLVALA TE + G+  +
Sbjct: 151 AMLGLVALAATEIITGAPFI 170

Probably involved in the integration of pigments into the mature pigment-protein complexes.

Hordeum vulgare (taxid: 4513)

>sp|P14895|ELI5_HORVU High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1

 Score =  142 bits (359), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 75/129 (58%), Positives = 93/129 (72%), Gaps = 7/129 (5%)

Query: 63  TQPPKLPRISTKFS-----DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS 117
           T  P  P+  TK +     D  AFSGPAPERINGRLAM+GFVAAL+VE ++G  +  Q+ 
Sbjct: 101 TTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVG 160

Query: 118 --DGGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVT 175
               G+AWFL T+ + SVASL+PL +G SVESKS G  ++DAELWNGRFAM+GLVALA T
Sbjct: 161 MWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAAT 220

Query: 176 EFVKGSTLV 184
           EF+ G+  V
Sbjct: 221 EFITGAPFV 229

Probably involved in the integration of pigments into the mature pigment-protein complexes.

Hordeum vulgare (taxid: 4513)

>sp|P14896|ELI6_HORVU Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1

 Score =  138 bits (347), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 100/156 (64%), Gaps = 2/156 (1%)

Query: 31  FSSVKYLP-GTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERI 89
           F+    LP G+ +   +L  R +    Q +  +  PP  P+ ST   D  AFSGPAPERI
Sbjct: 10  FAGAAVLPRGSARSLPALGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERI 69

Query: 90  NGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTSVLLSVASLVPLFKGVSVESK 148
           NGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T  +LS+ASLVPL +G S E +
Sbjct: 70  NGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGR 129

Query: 149 SDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 184
           +   M ++AELWNGRFAM+GLVALA TE + G+  +
Sbjct: 130 AGAIMNANAELWNGRFAMIGLVALAATEIITGTPFI 165

Probably involved in the integration of pigments into the mature pigment-protein complexes.

Hordeum vulgare (taxid: 4513)

>sp|P27516|CBR_DUNBA Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 67/110 (60%), Gaps = 8/110 (7%)

Query: 76  SDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTSVLLSVAS 135
           ++V  FSG APE INGRLAM+GFVAAL  ELS G+ V  QL D      L T VL S AS
Sbjct: 68  TEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAAS 125

Query: 136 LVPLFKGVSVESKSD--GFMTSDAELWNGRFAMMGLVALAVTEFVKGSTL 183
           L+P F       K D  G  T DAE+ NGRFAM+G  A+ V E ++G  L
Sbjct: 126 LIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIAL 171

Putative zeaxanthin binding protein. That forms photoprotective complexes within the light-harvesting antennae.

Dunaliella bardawil (taxid: 3045)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
380504946	208	ELIP, partial [Citrus sinensis]	0.978	0.865	0.796	5e-74
297835288	183	early light-inducable protein [Arabidops	0.967	0.972	0.627	1e-57
170522964	190	putative cold-inducible protein [Camelli	0.961	0.931	0.606	1e-57
259018355	175	putative early light induced protein 2 [	0.951	1.0	0.635	2e-56
351723745	192	early light-induced protein [Glycine max	0.956	0.916	0.598	4e-54
255627107	192	unknown [Glycine max]	0.956	0.916	0.604	5e-54
38123375	194	ELIP [Brassica rapa subsp. pekinensis]	0.777	0.737	0.674	1e-53
28194659	189	putative early light induced protein [Ar	0.934	0.910	0.617	3e-53
224102113	182	early light-inducible protein [Populus t	0.978	0.989	0.602	9e-53
224163581	182	early light-inducible protein [Populus t	0.983	0.994	0.632	1e-52

>gi|380504946|gb|AFD62760.1| ELIP, partial [Citrus sinensis]

 Score =  282 bits (721), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 153/192 (79%), Positives = 164/192 (85%), Gaps = 12/192 (6%)

Query: 1   MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQ-- 58
           MAASLATQSML S V AARVTGIR+SG  Q SSVKYLP +L+RNV+LSVRC A++EQQ  
Sbjct: 19  MAASLATQSMLASPV-AARVTGIRRSGANQLSSVKYLP-SLRRNVNLSVRCTAEDEQQQQ 76

Query: 59  --------KDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQ 110
                        QPPK PR+ST FS+VFAFSGPAPERINGRLAMIGFVAAL VE+SKGQ
Sbjct: 77  QKDDQPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQ 136

Query: 111 DVFAQLSDGGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLV 170
           DVFAQLSDGGVAWFLGTSVLL+VASLVPLFKGVSVESKSDGFMTSDAELWNGRFAM+GLV
Sbjct: 137 DVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLV 196

Query: 171 ALAVTEFVKGST 182
           ALA TEFVKG T
Sbjct: 197 ALAFTEFVKGGT 208

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835288|ref|XP_002885526.1| early light-inducable protein [Arabidopsis lyrata subsp. lyrata] gi|297331366|gb|EFH61785.1| early light-inducable protein [Arabidopsis lyrata subsp. lyrata]

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/185 (62%), Positives = 143/185 (77%), Gaps = 7/185 (3%)

Query: 5   LATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQ 64
           +AT S    SV A  +T  + +G   F +  +   +L+RN  + VRCMA+ E + + S  
Sbjct: 1   MATASFNMQSVFAGGLTTRKINGNKLFFAGTF--PSLKRNYPVGVRCMAEGEPKNEDSAP 58

Query: 65  -----PPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG 119
                PP  P++STKFSD+ AFSGPAPERINGRLAM+GFVAALAVELSKG++VFAQ+SDG
Sbjct: 59  TSAAPPPTKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKGENVFAQISDG 118

Query: 120 GVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVK 179
           GV+WFLGT+ +L++ASLVPLFKG++ ESKSDG MTSDAELWNGRFAM+GLVALA TEFVK
Sbjct: 119 GVSWFLGTTAILTLASLVPLFKGITAESKSDGIMTSDAELWNGRFAMLGLVALAFTEFVK 178

Query: 180 GSTLV 184
           G TLV
Sbjct: 179 GGTLV 183

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|170522964|gb|ACB20694.1| putative cold-inducible protein [Camellia sinensis] gi|259018359|gb|ACV89762.1| putative light-inducible protein [Camellia sinensis]

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 146/193 (75%), Gaps = 16/193 (8%)

Query: 5   LATQSMLGSSVVAARVTGIRKSGVY-QFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQST 63
           +AT +M   S++A  V+G+     + QF+   Y+P  LQRN  + VRCMA+++Q KD + 
Sbjct: 1   MATPAM--QSILARPVSGVTARARFSQFTPCSYVP-RLQRNAGMQVRCMAEDDQNKDVTP 57

Query: 64  Q------------PPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQD 111
                        PP  P++STKFSDV AFSGPAPERINGRLAMIGFVAA+AVELSKG+D
Sbjct: 58  ITTPPPTSQPISFPPPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAMAVELSKGED 117

Query: 112 VFAQLSDGGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVA 171
           V AQ+S+GGV WF GTS++L++ASL+PLFKG SVES+S+G M+SDAELWNGRFAM+GLVA
Sbjct: 118 VLAQISNGGVPWFGGTSIVLTLASLIPLFKGGSVESRSEGIMSSDAELWNGRFAMLGLVA 177

Query: 172 LAVTEFVKGSTLV 184
           LA TEFVKG  LV
Sbjct: 178 LAFTEFVKGGALV 190

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259018355|gb|ACV89760.1| putative early light induced protein 2 [Camellia sinensis] gi|259018361|gb|ACV89763.1| putative early light induced protein 2 [Camellia sinensis]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/184 (63%), Positives = 143/184 (77%), Gaps = 9/184 (4%)

Query: 1   MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKD 60
           MA S   QS+L   V +  VT   + G  QF+   Y+P  LQ+N S+ VRCMAK  Q++D
Sbjct: 1   MATSATMQSVLARPVTS--VTTRARFG--QFTPCSYVP-YLQKNASMQVRCMAKYGQKED 55

Query: 61  QSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGG 120
            + +P    ++STKFSDV AFSGPAPERINGRLAMIGFVAA+AVELS G+DV  Q+S+GG
Sbjct: 56  VTQKP----KVSTKFSDVLAFSGPAPERINGRLAMIGFVAAMAVELSNGEDVLVQISNGG 111

Query: 121 VAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKG 180
           V WF+GTS++L++ASLVPLFKGVSVES+S+  M+SDAELWNGRFAM+GLVALA TEFVKG
Sbjct: 112 VPWFVGTSIVLTLASLVPLFKGVSVESRSERIMSSDAELWNGRFAMLGLVALAFTEFVKG 171

Query: 181 STLV 184
             LV
Sbjct: 172 GALV 175

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723745|ref|NP_001235754.1| early light-induced protein [Glycine max] gi|1778823|gb|AAC16403.1| early light-induced protein [Glycine max]

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 147/197 (74%), Gaps = 21/197 (10%)

Query: 2   AASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQ 61
           A+S A QS+L + ++  R++    S V QF  V  L   ++RNV L VR MAK EQ  + 
Sbjct: 3   ASSYAMQSILANPLI--RISS--GSRVNQFG-VPAL--HMRRNVGLRVRSMAKEEQPSEP 55

Query: 62  S---TQPPKL-----------PRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELS 107
           +   T PP +           P++STKFSDV AFSGPAPERINGRLAMIGFVAA+AVE++
Sbjct: 56  AIPVTPPPSVEPKPQPVSAPSPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAMAVEVA 115

Query: 108 KGQDVFAQLSDGGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMM 167
            GQ V  Q+S+GG+ WFLGTSV+L++ASL+PLF+GVSVESKS GFM+SDAELWNGRFAM+
Sbjct: 116 IGQGVLEQISNGGIPWFLGTSVVLTLASLIPLFQGVSVESKSKGFMSSDAELWNGRFAML 175

Query: 168 GLVALAVTEFVKGSTLV 184
           GL+ALA TE+VKGSTLV
Sbjct: 176 GLIALAFTEYVKGSTLV 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255627107|gb|ACU13898.1| unknown [Glycine max]

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 119/197 (60%), Positives = 147/197 (74%), Gaps = 21/197 (10%)

Query: 2   AASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQ 61
           A+S A QS+L + ++  R++    S V QF  V  L   ++RNV L VR MAK EQ  + 
Sbjct: 3   ASSYAMQSILANPLI--RISS--GSRVNQFG-VPAL--HMRRNVGLRVRSMAKEEQPSEP 55

Query: 62  ST------------QPPKLP--RISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELS 107
           +T            QP   P  ++STKFSDV AFSGPAPERINGRLAMIGFVAA+AVE++
Sbjct: 56  ATPVTPPPSVEPKPQPVSAPSSKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAMAVEVA 115

Query: 108 KGQDVFAQLSDGGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMM 167
           KGQ V  Q+S+GG+ WFLGTSV+L++ASL+PLF+GVSVESKS GFM+SDAELWNGRFAM+
Sbjct: 116 KGQGVLEQISNGGIPWFLGTSVVLTLASLIPLFQGVSVESKSKGFMSSDAELWNGRFAML 175

Query: 168 GLVALAVTEFVKGSTLV 184
           GL+ALA TE+VKGSTLV
Sbjct: 176 GLIALAFTEYVKGSTLV 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38123375|gb|AAR11456.1| ELIP [Brassica rapa subsp. pekinensis]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/163 (67%), Positives = 128/163 (78%), Gaps = 20/163 (12%)

Query: 40  TLQRNVSLSVRCMAKNEQQKDQST------QP------------PKLPRISTKFSDVFAF 81
            L+RN  + VRCMA  E  KD+ST      QP            P  P++STKFSD+ AF
Sbjct: 34  NLKRNYPVGVRCMA--EGMKDESTPSTSAAQPLSSSSSPPPPPPPTKPKVSTKFSDLLAF 91

Query: 82  SGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTSVLLSVASLVPLFK 141
           SGPAPERINGRLAM+GFVAALAVELSKG++V AQ+SDGGV+WFLGT+ +L++ASLVPLFK
Sbjct: 92  SGPAPERINGRLAMVGFVAALAVELSKGENVLAQISDGGVSWFLGTTAILTLASLVPLFK 151

Query: 142 GVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 184
           G++ ESKS GFMTSDAELWNGRFAM+GLVALA TEFVKG TLV
Sbjct: 152 GITAESKSKGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 194

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28194659|gb|AAO33591.1|AF479309_1 putative early light induced protein [Arachis hypogaea]

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 143/191 (74%), Gaps = 19/191 (9%)

Query: 3   ASLATQSMLGSSVVAARVTGIRKSGVYQFS-SVKYLPGTLQRNVSLSVRCMAKNEQQKDQ 61
           +S A QS+L S +         +S V QF     Y+P  ++RN SLSVR MA+ E+QK+Q
Sbjct: 4   SSYAMQSILASPMTRTP----SRSRVNQFGVPALYMP-NMRRNASLSVRSMAE-EEQKEQ 57

Query: 62  STQPPKLPR------------ISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKG 109
           ST+P                 +STKFSDV AFSGPAPERINGRLAMIGFVAALAVELS G
Sbjct: 58  STEPTSPVTPPPPKPQPRSPKMSTKFSDVLAFSGPAPERINGRLAMIGFVAALAVELSNG 117

Query: 110 QDVFAQLSDGGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGL 169
           QD+ +Q+S+GG+ WFLGTSV+LS+ASL+PLF+GVSVESKS GFM+SDAELWNGRFAM+GL
Sbjct: 118 QDLLSQISNGGIPWFLGTSVVLSLASLIPLFQGVSVESKSGGFMSSDAELWNGRFAMLGL 177

Query: 170 VALAVTEFVKG 180
           +ALA TE+VKG
Sbjct: 178 IALAFTEYVKG 188

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102113|ref|XP_002312551.1| early light-inducible protein [Populus trichocarpa] gi|222852371|gb|EEE89918.1| early light-inducible protein [Populus trichocarpa]

 Score =  211 bits (537), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 112/186 (60%), Positives = 142/186 (76%), Gaps = 6/186 (3%)

Query: 1   MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKD 60
           MA S   Q++L + V +  V    +S V    S  ++P  L+ + S  V+C   ++Q K 
Sbjct: 1   MATSTVMQTVLATPVPSGLVK--NRSRVSNLFSATFVP-RLRGSASKRVQCSKLDDQIKK 57

Query: 61  --QSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSD 118
             + +  PK P++S KF D+FAFSGPAPERINGRLAMIGFVAA+AVELSKGQD+F+Q+S+
Sbjct: 58  LAEPSSTPK-PKVSPKFLDLFAFSGPAPERINGRLAMIGFVAAMAVELSKGQDLFSQISN 116

Query: 119 GGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFV 178
           GGV+WF+GTS+LLSVASL+PLFKGVS ESKSDG MTSDAE+WNGRFAM+GLVALA TE+V
Sbjct: 117 GGVSWFVGTSILLSVASLIPLFKGVSAESKSDGVMTSDAEMWNGRFAMLGLVALACTEYV 176

Query: 179 KGSTLV 184
            G TL+
Sbjct: 177 SGGTLL 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224163581|ref|XP_002338573.1| early light-inducible protein [Populus trichocarpa] gi|118488109|gb|ABK95874.1| unknown [Populus trichocarpa] gi|222872878|gb|EEF10009.1| early light-inducible protein [Populus trichocarpa]

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 117/185 (63%), Positives = 144/185 (77%), Gaps = 4/185 (2%)

Query: 1   MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAK-NEQQK 59
           MA S   Q++L S V ++ V    +S V    S  Y+P  L+ + S  ++C A+ +EQ+ 
Sbjct: 1   MATSTVMQTVLASPVASSLVKN--RSRVSNLFSATYVP-RLRGSASKRLQCKAELDEQKM 57

Query: 60  DQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG 119
                PP  P++STKF+DV AFSGPAPERINGRLAMIGFVAA+AVELSKGQD+F+Q+S+G
Sbjct: 58  SAEPSPPPKPKVSTKFADVLAFSGPAPERINGRLAMIGFVAAMAVELSKGQDLFSQISNG 117

Query: 120 GVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVK 179
           GV+WF+GTS+LLSVASLVPLFKGVS ESKSDG MTSDAE+WNGRFAM+GLVALA TEFV 
Sbjct: 118 GVSWFVGTSILLSVASLVPLFKGVSAESKSDGVMTSDAEMWNGRFAMLGLVALAFTEFVS 177

Query: 180 GSTLV 184
           G TL+
Sbjct: 178 GRTLL 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2094354	195	ELIP1 "EARLY LIGHT-INDUCABLE P	0.684	0.646	0.746	1.3e-51
TAIR|locus:2130085	193	ELIP2 "EARLY LIGHT-INDUCIBLE P	0.690	0.658	0.695	6.4e-44

TAIR|locus:2094354 ELIP1 "EARLY LIGHT-INDUCABLE PROTEIN" [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
 Identities = 94/126 (74%), Positives = 104/126 (82%)

Query:    59 KDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSD 118
             K  S  PP  P++STKFSD+ AFSGPAPERINGRLAM+GFVAALAVELSKG++V AQ+SD
Sbjct:    70 KSPSPPPPMKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKGENVLAQISD 129

Query:   119 GGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFV 178
             GGV+WFLGT          PLFKG+SVESKS G MTSDAELWNGRFAM+GLVALA TEFV
Sbjct:   130 GGVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAMLGLVALAFTEFV 189

Query:   179 KGSTLV 184
             KG TLV
Sbjct:   190 KGGTLV 195

GO:0009507 "chloroplast" evidence=ISM

GO:0016168 "chlorophyll binding" evidence=ISS

GO:0009409 "response to cold" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0009411 "response to UV" evidence=RCA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2130085 ELIP2 "EARLY LIGHT-INDUCIBLE PROTEIN 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 89/128 (69%), Positives = 102/128 (79%)

Query:    58 QKDQSTQPP-KLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQL 116
             Q  QS  PP   P++STKF D+ AFSGPAPERINGRLAM+GFVAA+A+ELSKG++VFAQ+
Sbjct:    66 QMPQSPPPPVSKPKVSTKFGDLLAFSGPAPERINGRLAMVGFVAAIAMELSKGENVFAQI 125

Query:   117 SDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTE 176
             SDGGV WFLGT          PLFKG+  E+KS GFMTSDAELWNGRFAM+GLVALA TE
Sbjct:   126 SDGGVGWFLGTTALLTLASMVPLFKGIRAEAKSKGFMTSDAELWNGRFAMLGLVALAFTE 185

Query:   177 FVKGSTLV 184
             +V G TLV
Sbjct:   186 YVTGGTLV 193


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.131   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      184       174   0.00075  109 3  11 22  0.39    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  126 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.66u 0.12s 13.78t   Elapsed:  00:00:01
  Total cpu time:  13.66u 0.12s 13.78t   Elapsed:  00:00:01
  Start:  Fri May 10 03:13:18 2013   End:  Fri May 10 03:13:19 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0016168 "chlorophyll binding" evidence=ISS

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0010224 "response to UV-B" evidence=IEP;RCA

GO:0009411 "response to UV" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P11432	ELI_PEA	No assigned EC number	0.5979	0.9021	0.8469	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_302736.1 annotation not avaliable (183 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
pfam00504	135	pfam00504, Chloroa_b-bind, Chlorophyll A-B binding	1e-09
PHA02337	35	PHA02337, PHA02337, putative high light inducible	0.003

>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 28/129 (21%), Positives = 38/129 (29%), Gaps = 40/129 (31%)

Query: 85  APERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWF-------------LGTSVLL 131
             E  +GR AM+  + AL  EL       A    G  AWF             L   +LL
Sbjct: 11  EAELKHGRWAMLAVLGALVPELLTKLGGVA----GEPAWFEAGGPLLPAIPTLLALQILL 66

Query: 132 SVASLVPLFKGVSVESKSDGF--------------MTSD---------AELWNGRFAMMG 168
            +  L             +G               +  D          E+ NGR AM+ 
Sbjct: 67  LMGFLELARWQGGKAPGGEGGDPGYPGGFGFDPLGLAKDPETFAELKLKEIKNGRLAMIA 126

Query: 169 LVALAVTEF 177
            +   V E 
Sbjct: 127 FLGFFVQEL 135

Length = 135

>gnl|CDD|177361 PHA02337, PHA02337, putative high light inducible protein

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 84  PAPERINGRLAMIGFVAALAVELSKGQ 110
           P  E  NG LAMIGFVAA+    + GQ
Sbjct: 3   PEAEIFNGWLAMIGFVAAVGAYATTGQ 29

Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	99.84
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	99.83
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	99.83
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	99.81
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	99.8
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	99.8
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	99.79
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	99.79
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	99.78
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	99.75
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	99.73
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	99.72
PLN00187	286	photosystem II light-harvesting complex II protein	99.71
PLN00171	324	photosystem light-harvesting complex -chlorophyll	99.7
PHA02337	35	putative high light inducible protein	99.3
PHA02337	35	putative high light inducible protein	99.1
PLN00014	250	light-harvesting-like protein 3; Provisional	99.02
PLN00014	250	light-harvesting-like protein 3; Provisional	98.36
PLN00084	214	photosystem II subunit S (PsbS); Provisional	98.31
PLN00084	214	photosystem II subunit S (PsbS); Provisional	98.26
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	98.25
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	98.24
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	98.2
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	98.17
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	98.14
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	98.13
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	98.12
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	98.1
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	98.07
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	98.0
PLN00187	286	photosystem II light-harvesting complex II protein	97.97
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	97.9
PLN00171	324	photosystem light-harvesting complex -chlorophyll	97.88
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	97.64

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=99.84  E-value=4e-21  Score=153.07  Aligned_cols=102  Identities=26%  Similarity=0.266  Sum_probs=65.2

Q ss_pred             ccccccCC-------CcchhhhhHHHHHHHHHHHHHHHhhCCch----hhhh--cc------cchhH--HHHHHHHHHHH
Q 029976           76 SDVFAFSG-------PAPERINGRLAMIGFVAALAVELSKGQDV----FAQL--SD------GGVAW--FLGTSVLLSVA  134 (184)
Q Consensus        76 ~d~~gF~g-------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~----~~q~--~~------~~~~~--~l~~~~li~~a  134 (184)
                      ||++||+.       +++|++|||+||||+++++++|+.++.+.    .+|.  ..      ....|  .+.++++++..
T Consensus        15 fDPlgl~~~~~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ig~~e~~   94 (156)
T PF00504_consen   15 FDPLGLSSDPDFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGGIPVPAAGWAQILLFIGALEPW   94 (156)
T ss_dssp             SSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTSSSSHSHHHHHHHHHHHHHHHH
T ss_pred             CChhhcccchhHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhhhhhhhHHHHHHHHHHhHhhhh
Confidence            99999993       59999999999999999999999876432    2221  11      11222  22233344443


Q ss_pred             hhcccccCC------CCCCCCC-----C--------CCChHHHHHhHHHHHHHHHHHHHHHH
Q 029976          135 SLVPLFKGV------SVESKSD-----G--------FMTSDAELWNGRFAMMGLVALAVTEF  177 (184)
Q Consensus       135 Sl~p~~~g~------~~e~~~~-----G--------~ft~~aEl~NGRLAMlGf~gll~qE~  177 (184)
                      +........      ...+++.     |        .+++++||+|||||||||+|+++||.
T Consensus        95 ~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~  156 (156)
T PF00504_consen   95 RQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA  156 (156)
T ss_dssp             HHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             hcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            332222110      1112221     1        14689999999999999999999983

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=99.83  E-value=4.1e-20  Score=155.77  Aligned_cols=111  Identities=22%  Similarity=0.266  Sum_probs=71.6

Q ss_pred             CcccccccCC---------CcchhhhhHHHHHHHHHHHHHHHhhCCchhh-------------hhcccc-hhHHHHHHHH
Q 029976           74 KFSDVFAFSG---------PAPERINGRLAMIGFVAALAVELSKGQDVFA-------------QLSDGG-VAWFLGTSVL  130 (184)
Q Consensus        74 ~~~d~~gF~g---------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~-------------q~~~~~-~~~~l~~~~l  130 (184)
                      ..||++||+.         +++|++|||+|||+++|.+++|..+..+...             ++...+ ...+++++.+
T Consensus        57 ~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~~~~~~~g~~~Qi~~~ig~  136 (209)
T PLN00089         57 KKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLKSGAMIQIFAWIGF  136 (209)
T ss_pred             cCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHHHHhhcccccHHHHHHHHHH
Confidence            4599999984         2799999999999999999999876443211             111111 1122333344


Q ss_pred             HHHHhhccc---ccCCCCCCCCCCC----C----------ChHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 029976          131 LSVASLVPL---FKGVSVESKSDGF----M----------TSDAELWNGRFAMMGLVALAVTEFVKGSTLV  184 (184)
Q Consensus       131 i~~aSl~p~---~~g~~~e~~~~G~----f----------t~~aEl~NGRLAMlGf~gll~qE~vTG~~l~  184 (184)
                      ++..-..+.   .......++++|+    +          .+.+||+||||||+|+.|+++||++||++++
T Consensus       137 ~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~  207 (209)
T PLN00089        137 VDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP  207 (209)
T ss_pred             HHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence            443211121   0111223445441    1          2468999999999999999999999999874

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=99.83  E-value=3.9e-20  Score=159.47  Aligned_cols=109  Identities=25%  Similarity=0.396  Sum_probs=69.9

Q ss_pred             ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhh--hcccc-hhH-------H---HHHHHHHHHH
Q 029976           76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQ--LSDGG-VAW-------F---LGTSVLLSVA  134 (184)
Q Consensus        76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q--~~~~~-~~~-------~---l~~~~li~~a  134 (184)
                      ||++|++.        .++|++||||||+|++|++++|++++.+++.+  +...+ ..+       +   ++.+..+++.
T Consensus        76 FDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~~ag~~~~~~~~~~l~~ie~~~mg~~E~~  155 (250)
T PLN00101         76 FDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIR  155 (250)
T ss_pred             CCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccccccchhhcccchHHHHHHHHHHHHHHHH
Confidence            89999974        27899999999999999999999998776521  11111 111       1   1111222222


Q ss_pred             hhcc-----------cccCCCCCCC----CCCCCC----------hHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 029976          135 SLVP-----------LFKGVSVESK----SDGFMT----------SDAELWNGRFAMMGLVALAVTEFVKGSTLV  184 (184)
Q Consensus       135 Sl~p-----------~~~g~~~e~~----~~G~ft----------~~aEl~NGRLAMlGf~gll~qE~vTG~~l~  184 (184)
                      ....           .+.+...++.    ++|.|+          +.||||||||||+||+|+++|+++||++.+
T Consensus       156 R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG~FDPLgl~~~~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi  230 (250)
T PLN00101        156 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTEEAKEKELANGRLAMLAFLGFVVQHNVTGKGPF  230 (250)
T ss_pred             HhhcccCCCcccccccccccccCCccccCCCCccCccCCCccHHHHHHHHhhcchHHHHHhhHhheehccCCChH
Confidence            2111           1111111111    122232          589999999999999999999999999863

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=99.81  E-value=1.5e-19  Score=155.43  Aligned_cols=108  Identities=21%  Similarity=0.226  Sum_probs=68.7

Q ss_pred             ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc-cch-hHHHHHHHHHHHHhhccccc--CC
Q 029976           76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQLSD-GGV-AWFLGTSVLLSVASLVPLFK--GV  143 (184)
Q Consensus        76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~-~~~-~~~l~~~~li~~aSl~p~~~--g~  143 (184)
                      ||++||+.        .++|++|||+||+|++|.+++|+++...+++.-.. .+. ...+..++++ +..+++.++  +.
T Consensus        58 FDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~P~w~~ag~~~~~~~~~~l~~iqil-l~g~~E~~r~~~~  136 (246)
T PLN00100         58 FDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGLPKFWEAGAEKYGLDLQTLVLIQVV-VMAVLEAARYRGF  136 (246)
T ss_pred             CCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcccchhhcchhhhccchhHHHHHHHH-HHHHHhhhccccc
Confidence            89999974        27899999999999999999999764443321110 000 0111122222 233333322  11


Q ss_pred             -----CCCCCCCCC----C----ChHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 029976          144 -----SVESKSDGF----M----TSDAELWNGRFAMMGLVALAVTEFVKGSTLV  184 (184)
Q Consensus       144 -----~~e~~~~G~----f----t~~aEl~NGRLAMlGf~gll~qE~vTG~~l~  184 (184)
                           ..+++++++    |    .+.|||+||||||+||+|+++|+++||++.+
T Consensus       137 ~~~g~~~~pg~~~FDPLGl~~~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPl  190 (246)
T PLN00100        137 MKTGESGVLSFFPFDPTGMDSPEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPL  190 (246)
T ss_pred             ccccccCCCCCCCCCcccccHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChH
Confidence                 111222331    1    3699999999999999999999999999863

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=99.80  E-value=1.3e-19  Score=151.97  Aligned_cols=106  Identities=25%  Similarity=0.252  Sum_probs=67.3

Q ss_pred             CcccccccCC----------CcchhhhhHHHHHHHHHHHHHHH-hhCCchh-----------------hhhcccchhHHH
Q 029976           74 KFSDVFAFSG----------PAPERINGRLAMIGFVAALAVEL-SKGQDVF-----------------AQLSDGGVAWFL  125 (184)
Q Consensus        74 ~~~d~~gF~g----------~~aE~~NGR~AMlG~v~~l~~E~-~tg~~~~-----------------~q~~~~~~~~~l  125 (184)
                      ++||++||+.          +++|++|||+||++++|.+++|. .+-.+.+                 +++...++..++
T Consensus        45 g~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~a~~~vp~~g~~qi~  124 (202)
T PLN00120         45 GFFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGLLQIL  124 (202)
T ss_pred             CCCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccccccchhhhhhcchhHHHHHH
Confidence            6799999973          38999999999999999999996 2211110                 111111222223


Q ss_pred             HHHHHHHHHhhcccccCCCCCCC-------CCCCCC----------hHHHHHhHHHHHHHHHHHHHHHHhhCC
Q 029976          126 GTSVLLSVASLVPLFKGVSVESK-------SDGFMT----------SDAELWNGRFAMMGLVALAVTEFVKGS  181 (184)
Q Consensus       126 ~~~~li~~aSl~p~~~g~~~e~~-------~~G~ft----------~~aEl~NGRLAMlGf~gll~qE~vTG~  181 (184)
                      ++++++++.... ...+....++       ++| |+          +++||+||||||||+.|+++||+++|.
T Consensus       125 ~~ig~~E~~~~~-~~~~~~~~pGd~~~g~~d~g-fdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~  195 (202)
T PLN00120        125 AFIGFLELAVMK-DITGEGEFVGDFRNGYIDFG-WDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVE  195 (202)
T ss_pred             HHHHHHHHHhhc-ccccCCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            334444443221 1111111222       333 33          478999999999999999999999996

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=99.80  E-value=1.7e-19  Score=156.44  Aligned_cols=108  Identities=23%  Similarity=0.294  Sum_probs=68.9

Q ss_pred             ccccccCC-------------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhc-----ccc------------hhHHH
Q 029976           76 SDVFAFSG-------------PAPERINGRLAMIGFVAALAVELSKGQDVFAQLS-----DGG------------VAWFL  125 (184)
Q Consensus        76 ~d~~gF~g-------------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~-----~~~------------~~~~l  125 (184)
                      ||++|++.             .++|++||||||||++|++++|++++.+++.+..     +.+            ....+
T Consensus        65 FDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l  144 (262)
T PLN00048         65 FDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTL  144 (262)
T ss_pred             CCccccCCccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCccccccccccccccccccccccccccchhHH
Confidence            89999974             2579999999999999999999998766643211     101            01111


Q ss_pred             HHHHHHHHHhhcccccCCC-------------------------CCCCCCCC----C---------ChHHHHHhHHHHHH
Q 029976          126 GTSVLLSVASLVPLFKGVS-------------------------VESKSDGF----M---------TSDAELWNGRFAMM  167 (184)
Q Consensus       126 ~~~~li~~aSl~p~~~g~~-------------------------~e~~~~G~----f---------t~~aEl~NGRLAMl  167 (184)
                      +.+ .+.+..+++..+...                         ..++++++    +         .+.+||+||||||+
T Consensus       145 ~~~-~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~  223 (262)
T PLN00048        145 FVL-EMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAML  223 (262)
T ss_pred             HHH-HHHHhhheeeeccccccCCCcccccccccchhccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHH
Confidence            111 122333444322110                         01111111    1         25899999999999


Q ss_pred             HHHHHHHHHHhhCCCCC
Q 029976          168 GLVALAVTEFVKGSTLV  184 (184)
Q Consensus       168 Gf~gll~qE~vTG~~l~  184 (184)
                      |++|+++|+++||++.+
T Consensus       224 A~~G~~~q~~~tg~gp~  240 (262)
T PLN00048        224 AILGYFIQALVTGVGPF  240 (262)
T ss_pred             HhhhHhhhhhhcCCCHH
Confidence            99999999999998853

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=99.79  E-value=4.7e-19  Score=154.07  Aligned_cols=108  Identities=18%  Similarity=0.190  Sum_probs=67.8

Q ss_pred             ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhh---hcccch-----hHHHHHHHHHHHHhhccc
Q 029976           76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQ---LSDGGV-----AWFLGTSVLLSVASLVPL  139 (184)
Q Consensus        76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q---~~~~~~-----~~~l~~~~li~~aSl~p~  139 (184)
                      ||++|++.        .++|++||||||||++|++++|++++.+++..   ...+..     ...+..+.++ +..+++.
T Consensus        85 FDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q~~-lmG~~E~  163 (267)
T PLN00098         85 FDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMV-LMGWAEG  163 (267)
T ss_pred             cCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHHHHH-HHHHHHH
Confidence            89999974        38999999999999999999999887665431   111111     0011111221 1122221


Q ss_pred             ------cc-C---C----------C---CCCCCCC--C--C----------ChHHHHHhHHHHHHHHHHHHHHHHhhCCC
Q 029976          140 ------FK-G---V----------S---VESKSDG--F--M----------TSDAELWNGRFAMMGLVALAVTEFVKGST  182 (184)
Q Consensus       140 ------~~-g---~----------~---~e~~~~G--~--f----------t~~aEl~NGRLAMlGf~gll~qE~vTG~~  182 (184)
                            ++ |   .          .   ..+++.+  +  +          .+.+||+||||||++++|+++|+.+||++
T Consensus       164 ~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~g  243 (267)
T PLN00098        164 RRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEG  243 (267)
T ss_pred             HHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCC
Confidence                  00 0   0          0   0122211  1  1          15799999999999999999999999998


Q ss_pred             CC
Q 029976          183 LV  184 (184)
Q Consensus       183 l~  184 (184)
                      .+
T Consensus       244 Pl  245 (267)
T PLN00098        244 PI  245 (267)
T ss_pred             hH
Confidence            64

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=99.79  E-value=5.8e-19  Score=151.76  Aligned_cols=109  Identities=18%  Similarity=0.246  Sum_probs=67.5

Q ss_pred             ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhh---hhcccch--------hHHHHH---HHHHHH
Q 029976           76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFA---QLSDGGV--------AWFLGT---SVLLSV  133 (184)
Q Consensus        76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~---q~~~~~~--------~~~l~~---~~li~~  133 (184)
                      ||++|++.        .++|++||||||+|++|++++|++++.++..   +...+..        .++.+.   +..++.
T Consensus        67 fDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p~W~~Ag~~~~~~~~~~~l~~i~~~lmg~~E~  146 (244)
T PLN00097         67 FDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLPNWIDAAKWDGYWAGAGPLFFIQMAMFNWAEI  146 (244)
T ss_pred             CCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCCccccCCcchhccccchhHHHHHHHHHHHHHH
Confidence            89999974        3899999999999999999999998765421   1111101        111111   112222


Q ss_pred             Hhhccccc-C---C--------CCCCCC----CCCCC--------------hHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 029976          134 ASLVPLFK-G---V--------SVESKS----DGFMT--------------SDAELWNGRFAMMGLVALAVTEFVKGSTL  183 (184)
Q Consensus       134 aSl~p~~~-g---~--------~~e~~~----~G~ft--------------~~aEl~NGRLAMlGf~gll~qE~vTG~~l  183 (184)
                      ....-+.+ |   .        ..++.+    .|.|+              +.+|||||||||++++|+++|+++||++.
T Consensus       147 ~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGP  226 (244)
T PLN00097        147 RRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGP  226 (244)
T ss_pred             HHhhcccCCCccccccccccccCCcccccCCCCCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCH
Confidence            22111111 0   0        011111    12232              57999999999999999999999999986


Q ss_pred             C
Q 029976          184 V  184 (184)
Q Consensus       184 ~  184 (184)
                      +
T Consensus       227 l  227 (244)
T PLN00097        227 V  227 (244)
T ss_pred             H
Confidence            3

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=99.78  E-value=1.3e-18  Score=149.56  Aligned_cols=107  Identities=21%  Similarity=0.259  Sum_probs=65.4

Q ss_pred             ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhh-----hccc-------chhH----HHHHHHHH
Q 029976           76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQ-----LSDG-------GVAW----FLGTSVLL  131 (184)
Q Consensus        76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q-----~~~~-------~~~~----~l~~~~li  131 (184)
                      ||+++++.        +++|++||||||||++|.+++|+++...+++-     +..+       ++.|    .+..++++
T Consensus        67 fDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl  146 (243)
T PLN00099         67 FDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFL  146 (243)
T ss_pred             CCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhccCCcccccchhccCcchhhhccCccchhhHHHHHHHHHH
Confidence            89999974        37899999999999999999999754333211     0000       1111    11112222


Q ss_pred             HHHhhcccccCC------CCCCCC----CCCC---------ChHHHHHhHHHHHHHHHHHHHHH-HhhCCCCC
Q 029976          132 SVASLVPLFKGV------SVESKS----DGFM---------TSDAELWNGRFAMMGLVALAVTE-FVKGSTLV  184 (184)
Q Consensus       132 ~~aSl~p~~~g~------~~e~~~----~G~f---------t~~aEl~NGRLAMlGf~gll~qE-~vTG~~l~  184 (184)
                       +..++..++..      ...+++    .| |         .+.+|||||||||+|++|+++|| .+||++.+
T Consensus       147 -~ig~~E~~r~~~~~~~~~~yPGd~FDPlG-l~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl  217 (243)
T PLN00099        147 -AIAFVEHQRSMEKDPEKKKYPGGAFDPLG-YSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL  217 (243)
T ss_pred             -HHHHHHHHhhccCCCCCCcCCCCcCCccc-ccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChH
Confidence             22223322110      111221    12 2         25789999999999999999999 57898763

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=99.75  E-value=1.6e-17  Score=143.56  Aligned_cols=40  Identities=25%  Similarity=0.288  Sum_probs=34.8

Q ss_pred             ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhh
Q 029976           76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQ  115 (184)
Q Consensus        76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q  115 (184)
                      ||+++++.        .++|++||||||+|+++++++|+++|..+++.
T Consensus        80 FDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~a  127 (255)
T PLN00170         80 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA  127 (255)
T ss_pred             cCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhhC
Confidence            89999863        26899999999999999999999998877653

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=99.73  E-value=1.2e-17  Score=145.01  Aligned_cols=108  Identities=25%  Similarity=0.343  Sum_probs=67.3

Q ss_pred             ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchh-h---------hh-cccch------------h-H
Q 029976           76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVF-A---------QL-SDGGV------------A-W  123 (184)
Q Consensus        76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~-~---------q~-~~~~~------------~-~  123 (184)
                      ||++|++.        .++|++||||||+|+++++++|++++.++. .         |+ ..+++            . +
T Consensus        76 fDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~  155 (262)
T PLN00025         76 WDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSIL  155 (262)
T ss_pred             CCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchhhhHH
Confidence            89999974        278999999999999999999998754441 1         11 00110            0 0


Q ss_pred             HHHHHHHHHHHhhccccc--C----CC---CCCCC----CCC--------CChHHHHHhHHHHHHHHHHHHHHHHhhCCC
Q 029976          124 FLGTSVLLSVASLVPLFK--G----VS---VESKS----DGF--------MTSDAELWNGRFAMMGLVALAVTEFVKGST  182 (184)
Q Consensus       124 ~l~~~~li~~aSl~p~~~--g----~~---~e~~~----~G~--------ft~~aEl~NGRLAMlGf~gll~qE~vTG~~  182 (184)
                      .+..+.+ .+..++..++  +    ..   ..+++    .|.        ..+.+||+||||||++++|+++|+++||++
T Consensus       156 a~~~~qv-~lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~G  234 (262)
T PLN00025        156 AIWACQV-VLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG  234 (262)
T ss_pred             HHHHHHH-HHHHHHHHhcccCCcccccccCcCCcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCC
Confidence            0111111 1233333322  1    11   11221    111        126889999999999999999999999998


Q ss_pred             CC
Q 029976          183 LV  184 (184)
Q Consensus       183 l~  184 (184)
                      .+
T Consensus       235 Pl  236 (262)
T PLN00025        235 PL  236 (262)
T ss_pred             hH
Confidence            63

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=99.72  E-value=1.4e-17  Score=143.83  Aligned_cols=109  Identities=17%  Similarity=0.158  Sum_probs=66.6

Q ss_pred             ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchh-----hhhcc-------cchh-HH-HHHHHHHHH
Q 029976           76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVF-----AQLSD-------GGVA-WF-LGTSVLLSV  133 (184)
Q Consensus        76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~-----~q~~~-------~~~~-~~-l~~~~li~~  133 (184)
                      ||+|||+.        .++|++|||+||+|++|.+++|+.+..++.     .....       .+.. ++ ++.+++++.
T Consensus        68 FDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~p~w~~ag~~~~~~~~~~~~~~~q~~~mG~~E~  147 (252)
T PLN00147         68 FDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVWYEAGAVKFEFASTRTLFVVQLLLMGFAET  147 (252)
T ss_pred             CCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcCCcchhhcccchhccccchHHHHHHHHHHHHHHH
Confidence            89999974        378999999999999999999998765431     11110       0111 11 112222332


Q ss_pred             Hhhcccc-----------cCC-----CC---CCCCCC--C--C---------ChHHHHHhHHHHHHHHHHHHHHHHhhCC
Q 029976          134 ASLVPLF-----------KGV-----SV---ESKSDG--F--M---------TSDAELWNGRFAMMGLVALAVTEFVKGS  181 (184)
Q Consensus       134 aSl~p~~-----------~g~-----~~---e~~~~G--~--f---------t~~aEl~NGRLAMlGf~gll~qE~vTG~  181 (184)
                      ....-+.           .+.     ..   .+++.+  +  +         .+.+||+||||||+|++|+++||++||+
T Consensus       148 ~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~  227 (252)
T PLN00147        148 KRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHT  227 (252)
T ss_pred             HhhccccCCCccccccccccccccccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Confidence            2110000           000     01   122211  1  1         2578999999999999999999999998


Q ss_pred             CCC
Q 029976          182 TLV  184 (184)
Q Consensus       182 ~l~  184 (184)
                      +.+
T Consensus       228 Gp~  230 (252)
T PLN00147        228 GPI  230 (252)
T ss_pred             ChH
Confidence            863

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=99.71  E-value=1.4e-17  Score=146.04  Aligned_cols=109  Identities=27%  Similarity=0.354  Sum_probs=68.4

Q ss_pred             cccccccCC-CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhc----cc------chh---HHHHHHHHHHHHhhcccc
Q 029976           75 FSDVFAFSG-PAPERINGRLAMIGFVAALAVELSKGQDVFAQLS----DG------GVA---WFLGTSVLLSVASLVPLF  140 (184)
Q Consensus        75 ~~d~~gF~g-~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~----~~------~~~---~~l~~~~li~~aSl~p~~  140 (184)
                      +.+.|+|.+ +++|++||||||||++|++++|+++|..+++.-.    ++      +..   ..++.+.++ +..+++.+
T Consensus       124 ~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~G~~W~~aG~~~~~~g~~y~g~~~p~~~~~l~~iqvl-lmG~~E~~  202 (286)
T PLN00187        124 YSEVFGLQRFRECELIHGRWAMLATLGALSVEALTGVTWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVL-VIGYIEFQ  202 (286)
T ss_pred             chhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhccCCcccccccccccccccccccccchhHHHHHHHHHH-HHHHHHhh
Confidence            345566664 4899999999999999999999987654432100    00      111   112222222 34444554


Q ss_pred             cCCCCCC----CCCC-CC--------------ChHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 029976          141 KGVSVES----KSDG-FM--------------TSDAELWNGRFAMMGLVALAVTEFVKGSTLV  184 (184)
Q Consensus       141 ~g~~~e~----~~~G-~f--------------t~~aEl~NGRLAMlGf~gll~qE~vTG~~l~  184 (184)
                      +....+.    .+.| .|              .+.+||+||||||+|++|+++|+.+||++.+
T Consensus       203 R~~~~~~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi  265 (286)
T PLN00187        203 RNAELDPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPL  265 (286)
T ss_pred             hccCCCCCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChH
Confidence            4322111    1111 12              2578999999999999999999999998753

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=99.70  E-value=6e-17  Score=143.87  Aligned_cols=36  Identities=17%  Similarity=0.118  Sum_probs=31.3

Q ss_pred             ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCc
Q 029976           76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQD  111 (184)
Q Consensus        76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~  111 (184)
                      ||++||+.        .++|++|||+||||++|++++|+++..+
T Consensus       133 FDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g  176 (324)
T PLN00171        133 FDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFG  176 (324)
T ss_pred             CCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCC
Confidence            89999974        3799999999999999999999976443

>PHA02337 putative high light inducible protein

Probab=99.30  E-value=2.9e-12  Score=80.06  Aligned_cols=31  Identities=39%  Similarity=0.613  Sum_probs=29.5

Q ss_pred             CChHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 029976          153 MTSDAELWNGRFAMMGLVALAVTEFVKGSTL  183 (184)
Q Consensus       153 ft~~aEl~NGRLAMlGf~gll~qE~vTG~~l  183 (184)
                      |++.+|++|||+||+||+..+..|+.||+++
T Consensus         1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~i   31 (35)
T PHA02337          1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQII   31 (35)
T ss_pred             CccHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence            6889999999999999999999999999976

>PHA02337 putative high light inducible protein

Probab=99.10  E-value=7.4e-11  Score=73.78  Aligned_cols=29  Identities=52%  Similarity=0.737  Sum_probs=27.4

Q ss_pred             CcchhhhhHHHHHHHHHHHHHHHhhCCch
Q 029976           84 PAPERINGRLAMIGFVAALAVELSKGQDV  112 (184)
Q Consensus        84 ~~aE~~NGR~AMlG~v~~l~~E~~tg~~~  112 (184)
                      +.+|++|||+||+||+.++..|+.||+++
T Consensus         3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~i   31 (35)
T PHA02337          3 PEAEIFNGWLAMIGFVAAVGAYATTGQII   31 (35)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence            67999999999999999999999999876

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=99.02  E-value=2.8e-10  Score=97.48  Aligned_cols=47  Identities=30%  Similarity=0.425  Sum_probs=39.5

Q ss_pred             CCcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhccc--chhHHHHHHH
Q 029976           83 GPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG--GVAWFLGTSV  129 (184)
Q Consensus        83 g~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~~--~~~~~l~~~~  129 (184)
                      .+++|++|||+||+||+.++++|++||+++++|+++-  ++.+|+.+++
T Consensus       159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~~k~llfv~v~g  207 (250)
T PLN00014        159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFFCKTLLFVTVAG  207 (250)
T ss_pred             CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhhhHHHHHHHHHH
Confidence            4689999999999999999999999999999999884  4455544433

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=98.36  E-value=2.1e-07  Score=79.99  Aligned_cols=30  Identities=40%  Similarity=0.596  Sum_probs=28.2

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 029976          155 SDAELWNGRFAMMGLVALAVTEFVKGSTLV  184 (184)
Q Consensus       155 ~~aEl~NGRLAMlGf~gll~qE~vTG~~l~  184 (184)
                      +.+|++|||+|||||+..++.|++||++++
T Consensus       160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll  189 (250)
T PLN00014        160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLV  189 (250)
T ss_pred             chhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence            579999999999999999999999999874

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=98.31  E-value=3.8e-07  Score=75.68  Aligned_cols=31  Identities=32%  Similarity=0.494  Sum_probs=28.4

Q ss_pred             ChHHHHHhHHHHHHHHHHHHHHHHhh-CCCCC
Q 029976          154 TSDAELWNGRFAMMGLVALAVTEFVK-GSTLV  184 (184)
Q Consensus       154 t~~aEl~NGRLAMlGf~gll~qE~vT-G~~l~  184 (184)
                      ++..|+||||+||+||+.-++.|++| |++++
T Consensus       135 qK~nE~~NGRLAMLGF~~alitE~lTgGqGiL  166 (214)
T PLN00084        135 QKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL  166 (214)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence            46889999999999999999999999 88874

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=98.26  E-value=1.5e-06  Score=72.14  Aligned_cols=36  Identities=36%  Similarity=0.507  Sum_probs=33.5

Q ss_pred             CcchhhhhHHHHHHHHHHHHHHHhh-CCchhhhhccc
Q 029976           84 PAPERINGRLAMIGFVAALAVELSK-GQDVFAQLSDG  119 (184)
Q Consensus        84 ~~aE~~NGR~AMlG~v~~l~~E~~t-g~~~~~q~~~~  119 (184)
                      +.-|++|||+||+||+.+++.|+.| |++++.|+...
T Consensus       136 K~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~E  172 (214)
T PLN00084        136 KPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGE  172 (214)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccc
Confidence            4679999999999999999999999 99999999874

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=98.25  E-value=4.3e-07  Score=72.32  Aligned_cols=30  Identities=37%  Similarity=0.419  Sum_probs=27.3

Q ss_pred             CChHHHHHhHHHHHHHHHHHHHHHHhhCCC
Q 029976          153 MTSDAELWNGRFAMMGLVALAVTEFVKGST  182 (184)
Q Consensus       153 ft~~aEl~NGRLAMlGf~gll~qE~vTG~~  182 (184)
                      |.+.+|++|||+||+|++|.+++|+.++.+
T Consensus        28 ~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~   57 (156)
T PF00504_consen   28 WYREAELKHGRVAMLAFVGALVQEAGTGFP   57 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred             HHHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence            568999999999999999999999998753

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=98.24  E-value=4.6e-07  Score=78.69  Aligned_cols=45  Identities=27%  Similarity=0.409  Sum_probs=39.4

Q ss_pred             CcccccccCC----CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976           74 KFSDVFAFSG----PAPERINGRLAMIGFVAALAVELSKGQDVFAQLSD  118 (184)
Q Consensus        74 ~~~d~~gF~g----~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~  118 (184)
                      +.||+|||+.    +..|++|||+||++++|.+++++.||++.++++.+
T Consensus       187 G~FDPLgl~~~~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~  235 (250)
T PLN00101        187 GIFNPLNFAPTEEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQ  235 (250)
T ss_pred             CccCccCCCccHHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHH
Confidence            4599999974    25899999999999999999999999999887654

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=98.20  E-value=9.4e-07  Score=76.86  Aligned_cols=43  Identities=19%  Similarity=0.216  Sum_probs=38.0

Q ss_pred             ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976           76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQLSD  118 (184)
Q Consensus        76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~  118 (184)
                      +|++|+..        ...|++|||+||+|+.|.+++|+.||++.++++.+
T Consensus       185 FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~  235 (252)
T PLN00147        185 FNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLT  235 (252)
T ss_pred             CCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            99999974        25799999999999999999999999998877644

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=98.17  E-value=7.8e-07  Score=77.10  Aligned_cols=43  Identities=26%  Similarity=0.352  Sum_probs=38.2

Q ss_pred             ccccccCC---CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976           76 SDVFAFSG---PAPERINGRLAMIGFVAALAVELSKGQDVFAQLSD  118 (184)
Q Consensus        76 ~d~~gF~g---~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~  118 (184)
                      ||++||+.   +..|++|||+||+|+.|.+++++.||++.++++.+
T Consensus       150 FDPLGl~~~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~  195 (246)
T PLN00100        150 FDPTGMDSPEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKA  195 (246)
T ss_pred             CCcccccHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence            89999874   37999999999999999999999999998877654

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=98.14  E-value=1.3e-06  Score=76.33  Aligned_cols=47  Identities=23%  Similarity=0.340  Sum_probs=40.4

Q ss_pred             CCCcccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976           72 STKFSDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQLSD  118 (184)
Q Consensus        72 ~~~~~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~  118 (184)
                      +.+++|++|+..        ...|++|||+||+++++.+++|+.||++.++++.+
T Consensus       187 PG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~  241 (262)
T PLN00025        187 PGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD  241 (262)
T ss_pred             CcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence            345699999974        26899999999999999999999999998887654

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=98.13  E-value=1.8e-06  Score=74.76  Aligned_cols=46  Identities=28%  Similarity=0.426  Sum_probs=39.9

Q ss_pred             CCcccccccCCC--------cchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976           73 TKFSDVFAFSGP--------APERINGRLAMIGFVAALAVELSKGQDVFAQLSD  118 (184)
Q Consensus        73 ~~~~d~~gF~g~--------~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~  118 (184)
                      .+.||++|+...        ..|++|||+||+++++.+++++.||++.++++.+
T Consensus       179 gg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~  232 (244)
T PLN00097        179 KGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFS  232 (244)
T ss_pred             CCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHH
Confidence            356999999752        5899999999999999999999999999887644

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=98.12  E-value=1.4e-06  Score=76.09  Aligned_cols=31  Identities=32%  Similarity=0.475  Sum_probs=27.8

Q ss_pred             CChHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 029976          153 MTSDAELWNGRFAMMGLVALAVTEFVKGSTL  183 (184)
Q Consensus       153 ft~~aEl~NGRLAMlGf~gll~qE~vTG~~l  183 (184)
                      +.+++||+|||+||+|++|++++|++++.++
T Consensus        84 ~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~  114 (262)
T PLN00048         84 WLAYGEVINGRFAMLGAAGAIAPEILGKAGL  114 (262)
T ss_pred             HHHHHHhhcchHHHHHHhhHHHHHHhccCCc
Confidence            4578999999999999999999999987665

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=98.10  E-value=1.6e-06  Score=75.96  Aligned_cols=31  Identities=23%  Similarity=0.415  Sum_probs=27.8

Q ss_pred             CChHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 029976          153 MTSDAELWNGRFAMMGLVALAVTEFVKGSTL  183 (184)
Q Consensus       153 ft~~aEl~NGRLAMlGf~gll~qE~vTG~~l  183 (184)
                      +.+++||+|||+||+|++|+++||++++.++
T Consensus        99 ~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~  129 (267)
T PLN00098         99 WFAQAELMHSRWAMLAVAGILIPECLERLGF  129 (267)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHhcCCCc
Confidence            4589999999999999999999999987654

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=98.07  E-value=2.6e-06  Score=73.78  Aligned_cols=45  Identities=27%  Similarity=0.352  Sum_probs=37.8

Q ss_pred             CcccccccCC--------CcchhhhhHHHHHHHHHHHHHH-HhhCCchhhhhcc
Q 029976           74 KFSDVFAFSG--------PAPERINGRLAMIGFVAALAVE-LSKGQDVFAQLSD  118 (184)
Q Consensus        74 ~~~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E-~~tg~~~~~q~~~  118 (184)
                      +.+|+|||+.        ...|++|||+||+|++|.+++| ..+|++.++++.+
T Consensus       169 d~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~  222 (243)
T PLN00099        169 GAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT  222 (243)
T ss_pred             CcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHH
Confidence            3599999974        2579999999999999999999 4689998887654

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=98.00  E-value=4.8e-06  Score=70.62  Aligned_cols=38  Identities=26%  Similarity=0.254  Sum_probs=33.1

Q ss_pred             ccccccCCC---------cchhhhhHHHHHHHHHHHHHHHhhCCchh
Q 029976           76 SDVFAFSGP---------APERINGRLAMIGFVAALAVELSKGQDVF  113 (184)
Q Consensus        76 ~d~~gF~g~---------~aE~~NGR~AMlG~v~~l~~E~~tg~~~~  113 (184)
                      ||++|+.+.         ..|+.|||+||+|+.+.++.|+.||+++.
T Consensus       161 fdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~  207 (209)
T PLN00089        161 FDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP  207 (209)
T ss_pred             ccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence            889988522         46999999999999999999999998875

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=97.97  E-value=5.3e-06  Score=73.36  Aligned_cols=44  Identities=20%  Similarity=0.342  Sum_probs=38.2

Q ss_pred             cccccccCCC--------cchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976           75 FSDVFAFSGP--------APERINGRLAMIGFVAALAVELSKGQDVFAQLSD  118 (184)
Q Consensus        75 ~~d~~gF~g~--------~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~  118 (184)
                      +||++|++..        ..|++|||+||+++++.++++..||++.++++.+
T Consensus       219 ~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~  270 (286)
T PLN00187        219 FFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWAT  270 (286)
T ss_pred             cccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            5999999742        5799999999999999999999999988776544

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=97.90  E-value=6.8e-06  Score=71.67  Aligned_cols=31  Identities=32%  Similarity=0.431  Sum_probs=27.9

Q ss_pred             CChHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 029976          153 MTSDAELWNGRFAMMGLVALAVTEFVKGSTL  183 (184)
Q Consensus       153 ft~~aEl~NGRLAMlGf~gll~qE~vTG~~l  183 (184)
                      +.+++||+|||+||+|++|++++|+++|..+
T Consensus        94 ~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w  124 (255)
T PLN00170         94 WYREAELIHGRWAMAAVVGIFVGQAWSGIPW  124 (255)
T ss_pred             HHHHHHhhccHHHHHHHHhhhhHHHccCCCh
Confidence            4579999999999999999999999998654

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=97.88  E-value=9.5e-06  Score=72.81  Aligned_cols=44  Identities=27%  Similarity=0.372  Sum_probs=37.9

Q ss_pred             cccccccCCC--------cchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976           75 FSDVFAFSGP--------APERINGRLAMIGFVAALAVELSKGQDVFAQLSD  118 (184)
Q Consensus        75 ~~d~~gF~g~--------~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~  118 (184)
                      .+|++|++..        ..|++|||+||+|+.|.+++|..||++.++++.+
T Consensus       257 ~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~  308 (324)
T PLN00171        257 LFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVD  308 (324)
T ss_pred             CCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHH
Confidence            3999999742        4699999999999999999999999998877544

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=97.64  E-value=4.8e-05  Score=64.25  Aligned_cols=26  Identities=31%  Similarity=0.281  Sum_probs=24.0

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHhhCC
Q 029976           85 APERINGRLAMIGFVAALAVELSKGQ  110 (184)
Q Consensus        85 ~aE~~NGR~AMlG~v~~l~~E~~tg~  110 (184)
                      ..|+.|||+||+|+.+.++.|.++|.
T Consensus       170 ~~EL~NGRLAMiai~G~~~qe~l~g~  195 (202)
T PLN00120        170 AIELNQGRAAQMGILALMVHEQLGVE  195 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            57999999999999999999998774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	99.76
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	99.76
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	99.74
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	99.74
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	99.73
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	99.67
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	98.45
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	98.44
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	98.21
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	98.19
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	98.16
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	98.11

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=99.76  E-value=1.8e-18  Score=146.55  Aligned_cols=110  Identities=25%  Similarity=0.315  Sum_probs=66.6

Q ss_pred             CcccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCch------hh----hh-ccc-------c------h
Q 029976           74 KFSDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDV------FA----QL-SDG-------G------V  121 (184)
Q Consensus        74 ~~~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~------~~----q~-~~~-------~------~  121 (184)
                      ..||++||+.        +++|++|||+||||++|.+++|+++..++      +.    +. .+.       +      .
T Consensus        44 ~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~  123 (232)
T 2bhw_A           44 YGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQS  123 (232)
T ss_dssp             CSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECC
T ss_pred             CCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCCcCCcccccccccchhccccchhcccCcchhhHHH
Confidence            3599999984        38999999999999999999999763221      11    11 000       0      0


Q ss_pred             hHHHHHHHHHHHHhhcccc--cC----CCCCC-CCCCCC--------------ChHHHHHhHHHHHHHHHHHHHHHHhhC
Q 029976          122 AWFLGTSVLLSVASLVPLF--KG----VSVES-KSDGFM--------------TSDAELWNGRFAMMGLVALAVTEFVKG  180 (184)
Q Consensus       122 ~~~l~~~~li~~aSl~p~~--~g----~~~e~-~~~G~f--------------t~~aEl~NGRLAMlGf~gll~qE~vTG  180 (184)
                      ..++....++ +...+..+  ++    ...++ .+.+.|              .+.+|++||||||+||+|+++||++||
T Consensus       124 i~~~~~~q~~-~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg  202 (232)
T 2bhw_A          124 ILAIWATQVI-LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG  202 (232)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHH-HHHHHHHHhhccCcccccccccCCCcccccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcC
Confidence            0111111221 11222211  11    11111 011111              257899999999999999999999999


Q ss_pred             CCCC
Q 029976          181 STLV  184 (184)
Q Consensus       181 ~~l~  184 (184)
                      ++++
T Consensus       203 ~g~~  206 (232)
T 2bhw_A          203 KGPL  206 (232)
T ss_dssp             SCSH
T ss_pred             CChH
Confidence            9863

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=99.76  E-value=9.8e-20  Score=157.28  Aligned_cols=109  Identities=17%  Similarity=0.222  Sum_probs=62.9

Q ss_pred             ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhh-----------hcccc-hhHH-HHHHHHHHHH
Q 029976           76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQ-----------LSDGG-VAWF-LGTSVLLSVA  134 (184)
Q Consensus        76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q-----------~~~~~-~~~~-l~~~~li~~a  134 (184)
                      ||++||+.        .++|++|||+||||+++.+++|++++.++...           ..+.+ +.++ ++.+.+++..
T Consensus        87 fDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~~  166 (269)
T 2wsc_2           87 FDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGR  166 (269)
T ss_dssp             -------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTTSSSSCCCTTSHHHHHTTHHHHHHHH
T ss_pred             CCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccccchhhhhcchHHHHHHHHHHHHHHHHH
Confidence            89999852        28999999999999999999999886554321           00111 1111 1122334433


Q ss_pred             hhc-----------ccccCCC------CCCCCC-----CC---------CChHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 029976          135 SLV-----------PLFKGVS------VESKSD-----GF---------MTSDAELWNGRFAMMGLVALAVTEFVKGSTL  183 (184)
Q Consensus       135 Sl~-----------p~~~g~~------~e~~~~-----G~---------ft~~aEl~NGRLAMlGf~gll~qE~vTG~~l  183 (184)
                      ...           |.|.+..      ..++++     |.         ..+.+||+|||||||||+|+++||++||+++
T Consensus       167 r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~  246 (269)
T 2wsc_2          167 RWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP  246 (269)
T ss_dssp             HHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCS
T ss_pred             HHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCCh
Confidence            221           1121110      011111     10         2368999999999999999999999999986


Q ss_pred             C
Q 029976          184 V  184 (184)
Q Consensus       184 ~  184 (184)
                      +
T Consensus       247 l  247 (269)
T 2wsc_2          247 I  247 (269)
T ss_dssp             S
T ss_pred             H
Confidence            4

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=99.74  E-value=1e-19  Score=155.83  Aligned_cols=109  Identities=21%  Similarity=0.339  Sum_probs=63.6

Q ss_pred             cccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhh---h--------cccc-hhHH-HHHHHHHHH
Q 029976           75 FSDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQ---L--------SDGG-VAWF-LGTSVLLSV  133 (184)
Q Consensus        75 ~~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q---~--------~~~~-~~~~-l~~~~li~~  133 (184)
                      .||++||+.        .++|++|||+||+|+++.+++|++++.++...   .        ...+ +.|+ ++.+++++.
T Consensus        75 gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~  154 (251)
T 2wsc_4           75 GFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEI  154 (251)
T ss_dssp             ------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSCCCCCSCCCSSSCSSCSSCTTTTHHHHHHTTTH
T ss_pred             CCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccCCccccccchHhhhccchHHHHHHHHHHHHHHH
Confidence            489999963        27999999999999999999999988766531   1        1111 1111 111222222


Q ss_pred             Hhhc-----------ccccCCCCCC----CCCCCC----------ChHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 029976          134 ASLV-----------PLFKGVSVES----KSDGFM----------TSDAELWNGRFAMMGLVALAVTEFVKGSTLV  184 (184)
Q Consensus       134 aSl~-----------p~~~g~~~e~----~~~G~f----------t~~aEl~NGRLAMlGf~gll~qE~vTG~~l~  184 (184)
                      ....           |.+.+...+.    .+++.|          .+.+||||||| |+||+|+++||++||++.+
T Consensus       155 ~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg~FDPLgl~~~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl  229 (251)
T 2wsc_4          155 RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPF  229 (251)
T ss_dssp             HHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCCTTCCCCCCSSSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCC
T ss_pred             HHhhcccCCCcccccccccccccccccccCCCCccCccchhHHHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHH
Confidence            2111           1122111010    011112          26899999999 9999999999999999864

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=99.74  E-value=1.3e-18  Score=148.26  Aligned_cols=109  Identities=27%  Similarity=0.280  Sum_probs=63.2

Q ss_pred             CcccccccCC-CcchhhhhHHHHHHHHHHHHHHHhhCCchhh---h-----hccc----chhH-HHHHHHHHHHHhhccc
Q 029976           74 KFSDVFAFSG-PAPERINGRLAMIGFVAALAVELSKGQDVFA---Q-----LSDG----GVAW-FLGTSVLLSVASLVPL  139 (184)
Q Consensus        74 ~~~d~~gF~g-~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~---q-----~~~~----~~~~-~l~~~~li~~aSl~p~  139 (184)
                      .+.|.++|.+ +++|++|||+||||++|++++|+++|..+++   +     ....    +..+ .+..+++ .+...+..
T Consensus        82 ~~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv-~lmG~~E~  160 (243)
T 3pl9_A           82 PYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEV-LVIGYIEF  160 (243)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHH-HHHHHHHH
T ss_pred             cccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcCcccccccccccccccccccCccchhhHHHHHHHH-HHHHHHHH
Confidence            3567777764 5999999999999999999999987654431   1     1110    1110 1111121 22222222


Q ss_pred             cc--CCCCC----CC----CCCC--------CChHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 029976          140 FK--GVSVE----SK----SDGF--------MTSDAELWNGRFAMMGLVALAVTEFVKGSTL  183 (184)
Q Consensus       140 ~~--g~~~e----~~----~~G~--------ft~~aEl~NGRLAMlGf~gll~qE~vTG~~l  183 (184)
                      ++  +...+    ++    +.|.        ..+.+|++|||+||+||+|+++||++||++.
T Consensus       161 ~R~~~~~~~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gp  222 (243)
T 3pl9_A          161 QRNAELDTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGP  222 (243)
T ss_dssp             HHHSCCCTTTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred             HhhcccCCccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCh
Confidence            21  11111    11    1111        1258999999999999999999999999875

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=99.73  E-value=6.2e-20  Score=159.03  Aligned_cols=30  Identities=30%  Similarity=0.418  Sum_probs=28.0

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 029976          155 SDAELWNGRFAMMGLVALAVTEFVKGSTLV  184 (184)
Q Consensus       155 ~~aEl~NGRLAMlGf~gll~qE~vTG~~l~  184 (184)
                      +.+||+||||||+||+|+++||++||++++
T Consensus       225 r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~  254 (276)
T 2wsc_3          225 KLKEVKNGRLAMLAILGYFVQALVTGVGPY  254 (276)
T ss_dssp             CCSHHHHHHHHHHHHHHHHSSCCCCSSCCS
T ss_pred             HHhhhcccchHHHHHHHHHHHHHhcCCChH
Confidence            578999999999999999999999999864

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=99.67  E-value=4.1e-18  Score=145.14  Aligned_cols=108  Identities=21%  Similarity=0.264  Sum_probs=63.2

Q ss_pred             ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhh-----hhccc-------chhH----HHHHHHHH
Q 029976           76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFA-----QLSDG-------GVAW----FLGTSVLL  131 (184)
Q Consensus        76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~-----q~~~~-------~~~~----~l~~~~li  131 (184)
                      ||++||+.        +++|++|||+||+|++|.+++|+++...+.+     .+..+       +..|    .+..++++
T Consensus        68 fDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l  147 (241)
T 2wsc_1           68 FDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFL  147 (241)
T ss_dssp             CSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHH
T ss_pred             cCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchhccCCcchhhhcCcchHHHHHHHHHHHHH
Confidence            89999973        2799999999999999999999865332221     01100       1111    11111111


Q ss_pred             HHHhhccccc--CCCC----CCC----CCCC--------CChHHHHHhHHHHHHHHHHHHHHH-HhhCCCCC
Q 029976          132 SVASLVPLFK--GVSV----ESK----SDGF--------MTSDAELWNGRFAMMGLVALAVTE-FVKGSTLV  184 (184)
Q Consensus       132 ~~aSl~p~~~--g~~~----e~~----~~G~--------ft~~aEl~NGRLAMlGf~gll~qE-~vTG~~l~  184 (184)
                       ...++..++  +...    .++    +.|.        ..+.+|||||||||+||+|+++|| .+||++.+
T Consensus       148 -~ig~~E~~r~~~~~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl  218 (241)
T 2wsc_1          148 -AIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL  218 (241)
T ss_dssp             -HTHHHHHHHTSCCSSCCSSSCSCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCC
T ss_pred             -HHHHHHHHHHhccCCCCCCCCCCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchH
Confidence             112222211  1000    010    0110        136899999999999999999999 58998764

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=98.45  E-value=1.2e-07  Score=80.85  Aligned_cols=47  Identities=19%  Similarity=0.256  Sum_probs=40.8

Q ss_pred             CCCcccccccCCC--------cchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976           72 STKFSDVFAFSGP--------APERINGRLAMIGFVAALAVELSKGQDVFAQLSD  118 (184)
Q Consensus        72 ~~~~~d~~gF~g~--------~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~  118 (184)
                      +.+++|++|++..        .+|++|||+||+|+++.+++|+.||++.++|+.+
T Consensus       174 PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~  228 (243)
T 3pl9_A          174 PGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVT  228 (243)
T ss_dssp             CCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            3457999999742        6899999999999999999999999999888654

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=98.44  E-value=1.4e-07  Score=79.80  Aligned_cols=46  Identities=24%  Similarity=0.345  Sum_probs=39.9

Q ss_pred             CCcccccccCCC--------cchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976           73 TKFSDVFAFSGP--------APERINGRLAMIGFVAALAVELSKGQDVFAQLSD  118 (184)
Q Consensus        73 ~~~~d~~gF~g~--------~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~  118 (184)
                      .+++|++||...        .+|++|||+||+|+++.++.|..||++.++|+.+
T Consensus       158 g~~fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~  211 (232)
T 2bhw_A          158 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD  211 (232)
T ss_dssp             CTTSCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHH
T ss_pred             CcccccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            457999999742        6899999999999999999999999998887643

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=98.21  E-value=2.5e-07  Score=80.05  Aligned_cols=44  Identities=30%  Similarity=0.456  Sum_probs=37.1

Q ss_pred             cccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976           75 FSDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQLSD  118 (184)
Q Consensus        75 ~~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~  118 (184)
                      ++|++||+.        +.+|++|||+||+|+++.+++|+.||++.++|+.+
T Consensus       208 ~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~  259 (276)
T 2wsc_3          208 FFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLD  259 (276)
T ss_dssp             SCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC---
T ss_pred             cccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            389999973        37899999999999999999999999999887654

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=98.19  E-value=2.2e-07  Score=80.12  Aligned_cols=44  Identities=25%  Similarity=0.336  Sum_probs=38.6

Q ss_pred             Cc-ccccccCC---------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhc
Q 029976           74 KF-SDVFAFSG---------PAPERINGRLAMIGFVAALAVELSKGQDVFAQLS  117 (184)
Q Consensus        74 ~~-~d~~gF~g---------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~  117 (184)
                      ++ +|++||..         ..+|++|||+||+||++.++.|.+||++.++++.
T Consensus       198 ~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~  251 (269)
T 2wsc_2          198 GLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF  251 (269)
T ss_dssp             CSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred             CcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            44 89999862         3689999999999999999999999999988766

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=98.16  E-value=3e-07  Score=78.58  Aligned_cols=31  Identities=32%  Similarity=0.528  Sum_probs=29.0

Q ss_pred             CChHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 029976          153 MTSDAELWNGRFAMMGLVALAVTEFVKGSTL  183 (184)
Q Consensus       153 ft~~aEl~NGRLAMlGf~gll~qE~vTG~~l  183 (184)
                      +.+.+|++|||+||+|++|++++|++++.++
T Consensus        90 ~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~  120 (251)
T 2wsc_4           90 WFVQAELVNGRWAMLGVAGMLLPEVFTSIGI  120 (251)
T ss_dssp             TTHHHHHHHTHHHHHHHTTSSTTSSSCCSCS
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhcCCCc
Confidence            6799999999999999999999999998765

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=98.11  E-value=7.2e-07  Score=75.85  Aligned_cols=46  Identities=26%  Similarity=0.337  Sum_probs=39.0

Q ss_pred             CCcccccccCC--------CcchhhhhHHHHHHHHHHHHHH-HhhCCchhhhhcc
Q 029976           73 TKFSDVFAFSG--------PAPERINGRLAMIGFVAALAVE-LSKGQDVFAQLSD  118 (184)
Q Consensus        73 ~~~~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E-~~tg~~~~~q~~~  118 (184)
                      .+.+|++||+.        +..|++|||+||+|+++.++.| ..+|++.++++..
T Consensus       169 gg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~  223 (241)
T 2wsc_1          169 GGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT  223 (241)
T ss_dssp             SCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSC
T ss_pred             CCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHH
Confidence            35799999873        3689999999999999999999 5799998887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d1rwta_	218	f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi	0.001

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 87  ERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTSVLLSVASLVP 138
           E  NGRLAM          +  G+     L+D  +A  +  +      + VP
Sbjct: 167 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD-HLADPVNNNAWNFATNFVP 217

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	99.83
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	98.51

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.83  E-value=6.6e-21  Score=157.21  Aligned_cols=34  Identities=29%  Similarity=0.279  Sum_probs=30.8

Q ss_pred             ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhC
Q 029976           76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKG  109 (184)
Q Consensus        76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg  109 (184)
                      ||++||+.        +++|++|||+||||+++.+++|+++.
T Consensus        33 FDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~   74 (218)
T d1rwta_          33 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR   74 (218)
T ss_dssp             CCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhcc
Confidence            89999984        28999999999999999999998753

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.51  E-value=4e-08  Score=79.71  Aligned_cols=46  Identities=24%  Similarity=0.343  Sum_probs=40.3

Q ss_pred             CCcccccccCCC--------cchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976           73 TKFSDVFAFSGP--------APERINGRLAMIGFVAALAVELSKGQDVFAQLSD  118 (184)
Q Consensus        73 ~~~~d~~gF~g~--------~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~  118 (184)
                      .+.+|++++...        ..|+.|||+||+|+++.+++|+.||++.++|+.+
T Consensus       145 ~g~fdPlg~~~~~e~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~  198 (218)
T d1rwta_         145 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD  198 (218)
T ss_dssp             CGGGCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred             CCCccccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHH
Confidence            456899999742        4899999999999999999999999999998765