Citrus Sinensis ID: 029978
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 184 | 2.2.26 [Sep-21-2011] | |||||||
| Q5ZKQ8 | 186 | ADP-ribosylation factor-l | no | no | 0.994 | 0.983 | 0.655 | 3e-72 | |
| Q66HA6 | 186 | ADP-ribosylation factor-l | yes | no | 0.994 | 0.983 | 0.661 | 4e-72 | |
| Q9CQW2 | 186 | ADP-ribosylation factor-l | yes | no | 0.994 | 0.983 | 0.661 | 4e-72 | |
| Q9NVJ2 | 186 | ADP-ribosylation factor-l | yes | no | 0.994 | 0.983 | 0.661 | 4e-72 | |
| Q6NZW8 | 186 | ADP-ribosylation factor-l | yes | no | 0.994 | 0.983 | 0.661 | 9e-72 | |
| Q96BM9 | 186 | ADP-ribosylation factor-l | no | no | 0.994 | 0.983 | 0.650 | 1e-71 | |
| Q2KI07 | 186 | ADP-ribosylation factor-l | yes | no | 0.994 | 0.983 | 0.655 | 1e-71 | |
| Q6P8C8 | 186 | ADP-ribosylation factor-l | yes | no | 0.994 | 0.983 | 0.650 | 2e-71 | |
| Q5R6E7 | 186 | ADP-ribosylation factor-l | yes | no | 0.994 | 0.983 | 0.655 | 5e-71 | |
| Q9VHV5 | 186 | ADP-ribosylation factor-l | yes | no | 1.0 | 0.989 | 0.657 | 6e-71 |
| >sp|Q5ZKQ8|ARL8A_CHICK ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 270 bits (691), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 120/183 (65%), Positives = 153/183 (83%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
+ L+ L+W R+LF+K+EMEL+L+GLQ +GKT+ VNVIA+G ++EDMIPTVGFNMRK+T
Sbjct: 2 LALFNKLLDWFRALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S++ELH+LL KP L
Sbjct: 62 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Gallus gallus (taxid: 9031) |
| >sp|Q66HA6|ARL8B_RAT ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (690), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 121/183 (66%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNVIA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR+ELH+LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Rattus norvegicus (taxid: 10116) |
| >sp|Q9CQW2|ARL8B_MOUSE ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (690), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 121/183 (66%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNVIA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR+ELH+LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Mus musculus (taxid: 10090) |
| >sp|Q9NVJ2|ARL8B_HUMAN ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (690), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 121/183 (66%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNVIA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR+ELH+LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosome motility (PubMed:16537643). May play a role in chromosome segregation (PubMed:15331635). Homo sapiens (taxid: 9606) |
| >sp|Q6NZW8|AR8BA_DANRE ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (687), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 121/183 (66%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
+ L L+W +SLF+K+EMEL+L+GLQ +GKT+ VNVIA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALINRLLDWFKSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY+VDAAD + + SR+ELH+LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLAAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Danio rerio (taxid: 7955) |
| >sp|Q96BM9|ARL8A_HUMAN ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (686), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 119/183 (65%), Positives = 153/183 (83%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
+ L+ L+W ++LF+K+EMEL+L+GLQ +GKT+ VNVIA+G ++EDMIPTVGFNMRK+T
Sbjct: 2 IALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S++ELH+LL KP L
Sbjct: 62 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Homo sapiens (taxid: 9606) |
| >sp|Q2KI07|ARL8B_BOVIN ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (685), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 120/183 (65%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNVIA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIK+WD+GGQPRF+SMWERYCR V+AIVY++DAAD + + SR+ELH+LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFQSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Bos taurus (taxid: 9913) |
| >sp|Q6P8C8|ARL8A_XENTR ADP-ribosylation factor-like protein 8A OS=Xenopus tropicalis GN=arl8a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 119/183 (65%), Positives = 152/183 (83%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
+ L+ L+W ++LF+K+EMEL+L+GLQ +GKT+ VNVIA+G ++EDMIPTVGFNMRK+T
Sbjct: 2 LALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD D + S++ELH+LL K L
Sbjct: 62 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQDKIEASKNELHNLLDKAQLQ 121
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDIPGALDEKELIERMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Xenopus tropicalis (taxid: 8364) |
| >sp|Q5R6E7|ARL8B_PONAB ADP-ribosylation factor-like protein 8B OS=Pongo abelii GN=ARL8B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (681), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 120/183 (65%), Positives = 150/183 (81%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNVIA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAA + + SR+ELH+LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAAYREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Pongo abelii (taxid: 9601) |
| >sp|Q9VHV5|ARL8_DROME ADP-ribosylation factor-like protein 8 OS=Drosophila melanogaster GN=Gie PE=1 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (680), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 121/184 (65%), Positives = 149/184 (80%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
+ L L W +S+F+K+EMEL+L+GLQ +GKT+ VNVIA+G ++EDMIPTVGFNMRK+T
Sbjct: 2 LALINRILEWFKSIFWKEEMELTLVGLQFSGKTTFVNVIASGQFAEDMIPTVGFNMRKIT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
+GNVTIK+WD+GGQPRFRSMWERYCR V+AIVY+VDAAD D L SR+ELH LL KP L
Sbjct: 62 RGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKLEASRNELHSLLDKPQLA 121
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIP+LVLGNK D P AL + L+E+M L SI DRE+CCY ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPGALDETGLIERMNLSSIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSKS 184
KS+S
Sbjct: 182 KSQS 185
|
May play a role in lysosome motility (PubMed:16537643). Essential role in chromosome segregation (PubMed:15331635). Drosophila melanogaster (taxid: 7227) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 184 | ||||||
| 224056258 | 184 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.961 | 1e-100 | |
| 224103767 | 184 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.956 | 2e-99 | |
| 255583323 | 184 | ADP-ribosylation factor, putative [Ricin | 1.0 | 1.0 | 0.945 | 2e-98 | |
| 449438319 | 184 | PREDICTED: ADP-ribosylation factor-like | 1.0 | 1.0 | 0.951 | 6e-98 | |
| 371501270 | 184 | ADP-ribosylation factor-like 8a [Nicotia | 1.0 | 1.0 | 0.929 | 9e-97 | |
| 371501274 | 184 | ADP-ribosylation factor-like 8c [Nicotia | 1.0 | 1.0 | 0.918 | 1e-96 | |
| 147858134 | 184 | hypothetical protein VITISV_035770 [Viti | 1.0 | 1.0 | 0.923 | 5e-96 | |
| 388491766 | 184 | unknown [Lotus japonicus] | 1.0 | 1.0 | 0.929 | 6e-96 | |
| 359807425 | 184 | uncharacterized protein LOC100776101 [Gl | 1.0 | 1.0 | 0.923 | 7e-96 | |
| 371501272 | 184 | ADP-ribosylation factor-like 8b [Nicotia | 1.0 | 1.0 | 0.929 | 9e-96 |
| >gi|224056258|ref|XP_002298779.1| predicted protein [Populus trichocarpa] gi|222846037|gb|EEE83584.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/184 (96%), Positives = 181/184 (98%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNV+ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD+DNL VSRSELHDLLSKPSL+
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADFDNLSVSRSELHDLLSKPSLS 120
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIPLLVLGNKIDKP ALSKED MEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGALSKEDFMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
Query: 181 KSKS 184
KSK+
Sbjct: 181 KSKT 184
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103767|ref|XP_002313185.1| predicted protein [Populus trichocarpa] gi|118481399|gb|ABK92642.1| unknown [Populus trichocarpa] gi|222849593|gb|EEE87140.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 176/184 (95%), Positives = 181/184 (98%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
MGLWEAFLNW+RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWEAFLNWIRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL VS+SELHDLLSKPSL+
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLSVSKSELHDLLSKPSLS 120
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIPLLVLGNKIDKP +LSKED MEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGSLSKEDFMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
Query: 181 KSKS 184
KSK+
Sbjct: 181 KSKN 184
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255583323|ref|XP_002532424.1| ADP-ribosylation factor, putative [Ricinus communis] gi|223527873|gb|EEF29965.1| ADP-ribosylation factor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 363 bits (931), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 174/184 (94%), Positives = 179/184 (97%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNV+ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD+DNL VS+SELHDLLSKPSLN
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADFDNLSVSKSELHDLLSKPSLN 120
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIPLLVLGNKIDKP ALSKE EQMGLKSITDREVCC+MISCKNSTNIDTVIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGALSKEAFTEQMGLKSITDREVCCFMISCKNSTNIDTVIDWLVKHS 180
Query: 181 KSKS 184
KSK+
Sbjct: 181 KSKN 184
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438319|ref|XP_004136936.1| PREDICTED: ADP-ribosylation factor-like protein 8A-like [Cucumis sativus] gi|449525451|ref|XP_004169731.1| PREDICTED: ADP-ribosylation factor-like protein 8A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 361 bits (927), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 175/184 (95%), Positives = 179/184 (97%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM+KVT
Sbjct: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMKKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY+NL VSRSELHDLLSKPSLN
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYENLSVSRSELHDLLSKPSLN 120
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIPLLVLGNKIDK ALSK DL E+MGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKQGALSKSDLTERMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
Query: 181 KSKS 184
KSK+
Sbjct: 181 KSKN 184
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|371501270|dbj|BAL44262.1| ADP-ribosylation factor-like 8a [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 357 bits (917), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 171/184 (92%), Positives = 180/184 (97%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD+DNL +S+SELHDLL+KPSL+
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADHDNLSISKSELHDLLNKPSLS 120
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIPLLVLGNKIDKP ALSK+ L ++MGLKSITDREVCCYMISCKNSTNID+VIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCYMISCKNSTNIDSVIDWLVKHS 180
Query: 181 KSKS 184
KSKS
Sbjct: 181 KSKS 184
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|371501274|dbj|BAL44264.1| ADP-ribosylation factor-like 8c [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 169/184 (91%), Positives = 179/184 (97%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
MGLWEA LNWLRSLFF+QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWEALLNWLRSLFFQQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD+DN+ +SRSE+HDLLSKPSLN
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADHDNVSISRSEIHDLLSKPSLN 120
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIPLLVLGNKIDKPEALSK+ L +QM LKS+TDREVCCYMISCKNSTNID+V+DWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPEALSKQALTDQMDLKSVTDREVCCYMISCKNSTNIDSVLDWLVKHS 180
Query: 181 KSKS 184
KSKS
Sbjct: 181 KSKS 184
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147858134|emb|CAN83936.1| hypothetical protein VITISV_035770 [Vitis vinifera] gi|296086990|emb|CBI33252.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 355 bits (911), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 170/184 (92%), Positives = 178/184 (96%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNV+ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIKLWDLGGQPRFR+MWERYCRAVSAIVYVVDAAD DN+ +S+SELHDLLSKPSLN
Sbjct: 61 KGNVTIKLWDLGGQPRFRTMWERYCRAVSAIVYVVDAADPDNIGISKSELHDLLSKPSLN 120
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIPLLVLGNKIDKP ALSK L E+MGLKSITDREVCC+MISCKNSTNID+VIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGALSKHALTEEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
Query: 181 KSKS 184
KSKS
Sbjct: 181 KSKS 184
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388491766|gb|AFK33949.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 355 bits (910), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 171/184 (92%), Positives = 178/184 (96%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNV+ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD DNL +SRSELHDLLSKPSL+
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLSKPSLS 120
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIPLLVLGNKIDKP ALSK+ L +QM LKSITDREVCC+MISCKNSTNID+VIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGALSKQALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
Query: 181 KSKS 184
KSKS
Sbjct: 181 KSKS 184
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359807425|ref|NP_001241133.1| uncharacterized protein LOC100776101 [Glycine max] gi|255640961|gb|ACU20760.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 354 bits (909), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 170/184 (92%), Positives = 178/184 (96%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNV+ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD DN+ +SRSELHDLLSKPSL+
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNISISRSELHDLLSKPSLS 120
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIPLLVLGNKIDK EALSK+ L +QM LKSITDREVCC+MISCKNSTNID+VIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKAEALSKQALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
Query: 181 KSKS 184
KSKS
Sbjct: 181 KSKS 184
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|371501272|dbj|BAL44263.1| ADP-ribosylation factor-like 8b [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 354 bits (909), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 171/184 (92%), Positives = 177/184 (96%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
MG+WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGIWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD DNL +S SELHDLLSKPSL+
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISSSELHDLLSKPSLS 120
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIPLLVLGNKIDKP A SK+ L +QMGLKSITDREVCCYMISCKNSTNID+VIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGAQSKQALTDQMGLKSITDREVCCYMISCKNSTNIDSVIDWLVKHS 180
Query: 181 KSKS 184
KSKS
Sbjct: 181 KSKS 184
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 184 | ||||||
| TAIR|locus:2097355 | 184 | ARLA1C "ADP-ribosylation facto | 1.0 | 1.0 | 0.913 | 6e-87 | |
| TAIR|locus:2158591 | 184 | ARLA1D "ADP-ribosylation facto | 1.0 | 1.0 | 0.896 | 1.3e-86 | |
| TAIR|locus:2151734 | 184 | ARLA1A "ADP-ribosylation facto | 0.989 | 0.989 | 0.829 | 1e-82 | |
| TAIR|locus:2097340 | 176 | ARLA1B "ADP-ribosylation facto | 0.907 | 0.948 | 0.802 | 2.4e-67 | |
| UNIPROTKB|Q5ZKQ8 | 186 | ARL8A "ADP-ribosylation factor | 0.994 | 0.983 | 0.655 | 1.7e-66 | |
| UNIPROTKB|F2Z4I5 | 186 | ARL8B "ADP-ribosylation factor | 0.994 | 0.983 | 0.661 | 2.2e-66 | |
| UNIPROTKB|E2RE13 | 186 | ARL8B "Uncharacterized protein | 0.994 | 0.983 | 0.661 | 2.2e-66 | |
| UNIPROTKB|Q9NVJ2 | 186 | ARL8B "ADP-ribosylation factor | 0.994 | 0.983 | 0.661 | 2.2e-66 | |
| MGI|MGI:1914416 | 186 | Arl8b "ADP-ribosylation factor | 0.994 | 0.983 | 0.661 | 2.2e-66 | |
| RGD|1562830 | 186 | Arl8b "ADP-ribosylation factor | 0.994 | 0.983 | 0.661 | 2.2e-66 |
| TAIR|locus:2097355 ARLA1C "ADP-ribosylation factor-like A1C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 168/184 (91%), Positives = 175/184 (95%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
MGL EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNV+ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLLEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD DNL VS+SELHDLLSK SLN
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLN 120
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIPLLVLGNKIDKP ALSKE L ++MGL S+TDREVCC+MISCKNSTNID VIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGALSKEALTDEMGLTSLTDREVCCFMISCKNSTNIDQVIDWLVKHS 180
Query: 181 KSKS 184
KSK+
Sbjct: 181 KSKN 184
|
|
| TAIR|locus:2158591 ARLA1D "ADP-ribosylation factor-like A1D" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 165/184 (89%), Positives = 175/184 (95%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
MGLW+A LNWLRSLFFKQEMELSLIGLQNAGKTSLVNV+ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWDALLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KG+VTIKLWDLGGQPRFRSMWERYCR+VSAIVYVVDAAD DNL VS+SELHDLLSK SLN
Sbjct: 61 KGSVTIKLWDLGGQPRFRSMWERYCRSVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLN 120
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIPLLVLGNKIDKP ALSKE L ++MGLKS+TDREVCC+MISCKNSTNID VIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGALSKEALTDEMGLKSLTDREVCCFMISCKNSTNIDQVIDWLVKHS 180
Query: 181 KSKS 184
KS +
Sbjct: 181 KSSN 184
|
|
| TAIR|locus:2151734 ARLA1A "ADP-ribosylation factor-like A1A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
Identities = 151/182 (82%), Positives = 173/182 (95%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
MGLW++ LNWLRSLFFKQEMELSL+GLQNAGKTSLVN IATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIK+WDLGGQ RFR+MWERYCR VSAIVYV+DAAD D++P+SRSEL+DLL+KPSLN
Sbjct: 61 KGNVTIKIWDLGGQRRFRTMWERYCRGVSAIVYVIDAADRDSVPISRSELNDLLTKPSLN 120
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIPLL+LGNKIDK EALSK+ L++Q+GL+S+TDREVCCYMISCK+S NID VIDWL+KHS
Sbjct: 121 GIPLLILGNKIDKSEALSKQALVDQLGLESVTDREVCCYMISCKDSINIDAVIDWLIKHS 180
Query: 181 KS 182
++
Sbjct: 181 RT 182
|
|
| TAIR|locus:2097340 ARLA1B "ADP-ribosylation factor-like A1B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 134/167 (80%), Positives = 144/167 (86%)
Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
+EMELSL+GLQN+GKTSLVNV+ATG YSEDMIPTVGFNMRKVTK NV I+LWDLGGQPRF
Sbjct: 10 KEMELSLVGLQNSGKTSLVNVVATGEYSEDMIPTVGFNMRKVTKENVAIRLWDLGGQPRF 69
Query: 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137
R MWERYCRAVS IVYVVDAAD +NL VSRSELHDLLS SL GIPLLVLGNKID AL
Sbjct: 70 RCMWERYCRAVSMIVYVVDAADTENLSVSRSELHDLLSNASLIGIPLLVLGNKIDIHGAL 129
Query: 138 SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 184
SKE L E+MGL S+T REVCC MISCKN T ID + DWLV HSKSK+
Sbjct: 130 SKEALTEEMGLSSVTSREVCCLMISCKNPTTIDQLTDWLVNHSKSKN 176
|
|
| UNIPROTKB|Q5ZKQ8 ARL8A "ADP-ribosylation factor-like protein 8A" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
Identities = 120/183 (65%), Positives = 153/183 (83%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
+ L+ L+W R+LF+K+EMEL+L+GLQ +GKT+ VNVIA+G ++EDMIPTVGFNMRK+T
Sbjct: 2 LALFNKLLDWFRALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S++ELH+LL KP L
Sbjct: 62 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
|
| UNIPROTKB|F2Z4I5 ARL8B "ADP-ribosylation factor-like protein 8B" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 121/183 (66%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNVIA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR+ELH+LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
|
| UNIPROTKB|E2RE13 ARL8B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 121/183 (66%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNVIA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR+ELH+LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
|
| UNIPROTKB|Q9NVJ2 ARL8B "ADP-ribosylation factor-like protein 8B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 121/183 (66%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNVIA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR+ELH+LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
|
| MGI|MGI:1914416 Arl8b "ADP-ribosylation factor-like 8B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 121/183 (66%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNVIA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR+ELH+LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
|
| RGD|1562830 Arl8b "ADP-ribosylation factor-like 8B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 121/183 (66%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNVIA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR+ELH+LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9VHV5 | ARL8_DROME | No assigned EC number | 0.6576 | 1.0 | 0.9892 | yes | no |
| Q5R6E7 | ARL8B_PONAB | No assigned EC number | 0.6557 | 0.9945 | 0.9838 | yes | no |
| P19146 | ARF2_YEAST | No assigned EC number | 0.3206 | 0.9836 | 1.0 | yes | no |
| Q9NVJ2 | ARL8B_HUMAN | No assigned EC number | 0.6612 | 0.9945 | 0.9838 | yes | no |
| Q4R4S4 | ARL8B_MACFA | No assigned EC number | 0.6502 | 0.9945 | 0.9838 | N/A | no |
| Q6NZW8 | AR8BA_DANRE | No assigned EC number | 0.6612 | 0.9945 | 0.9838 | yes | no |
| Q9CQW2 | ARL8B_MOUSE | No assigned EC number | 0.6612 | 0.9945 | 0.9838 | yes | no |
| Q54R04 | ARL8_DICDI | No assigned EC number | 0.6098 | 0.9891 | 0.9837 | yes | no |
| Q66HA6 | ARL8B_RAT | No assigned EC number | 0.6612 | 0.9945 | 0.9838 | yes | no |
| Q2KI07 | ARL8B_BOVIN | No assigned EC number | 0.6557 | 0.9945 | 0.9838 | yes | no |
| Q6P8C8 | ARL8A_XENTR | No assigned EC number | 0.6502 | 0.9945 | 0.9838 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_Genewise1_v1.C_LG_I4117 | hypothetical protein (185 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 184 | |||
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 1e-108 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 2e-57 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 7e-47 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 2e-43 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 2e-37 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 3e-36 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 5e-35 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 4e-34 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 1e-33 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 2e-33 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 6e-33 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 7e-33 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 9e-32 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 1e-31 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 9e-31 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 3e-30 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 1e-29 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 3e-29 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 2e-26 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 2e-26 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 5e-23 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 5e-22 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 1e-21 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 5e-20 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 1e-19 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 4e-18 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 6e-16 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 3e-15 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 4e-14 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 6e-13 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 7e-13 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 1e-12 | |
| cd04107 | 201 | cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1 | 3e-12 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 3e-12 | |
| cd04116 | 170 | cd04116, Rab9, Rab GTPase family 9 (Rab9) | 5e-12 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 1e-11 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 6e-11 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 1e-10 | |
| cd01862 | 172 | cd01862, Rab7, Rab GTPase family 7 (Rab7) | 2e-10 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 2e-10 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 6e-10 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 3e-09 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 3e-09 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 4e-09 | |
| cd04128 | 182 | cd04128, Spg1, Septum-promoting GTPase (Spg1) | 6e-09 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 7e-09 | |
| cd00880 | 161 | cd00880, Era_like, E | 1e-08 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 1e-08 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 2e-08 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 3e-08 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 4e-08 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 7e-08 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 2e-07 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 2e-07 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 3e-07 | |
| smart00174 | 174 | smart00174, RHO, Rho (Ras homology) subfamily of R | 3e-07 | |
| smart00176 | 200 | smart00176, RAN, Ran (Ras-related nuclear proteins | 6e-07 | |
| cd01878 | 204 | cd01878, HflX, HflX GTPase family | 7e-07 | |
| cd04132 | 197 | cd04132, Rho4_like, Ras homology family 4 (Rho4) o | 1e-06 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 2e-06 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 2e-06 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 3e-06 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 4e-06 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 4e-06 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 4e-06 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 5e-06 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 5e-06 | |
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 7e-06 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 1e-05 | |
| cd04163 | 168 | cd04163, Era, E | 1e-05 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 2e-05 | |
| pfam04670 | 230 | pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve | 3e-05 | |
| COG2262 | 411 | COG2262, HflX, GTPases [General function predictio | 3e-05 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 4e-05 | |
| PRK11058 | 426 | PRK11058, PRK11058, GTPase HflX; Provisional | 5e-05 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 5e-05 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 6e-05 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 9e-05 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 1e-04 | |
| PLN03108 | 210 | PLN03108, PLN03108, Rab family protein; Provisiona | 1e-04 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 1e-04 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 2e-04 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 2e-04 | |
| TIGR00487 | 587 | TIGR00487, IF-2, translation initiation factor IF- | 2e-04 | |
| cd04103 | 158 | cd04103, Centaurin_gamma, Centaurin gamma (CENTG) | 3e-04 | |
| cd01893 | 168 | cd01893, Miro1, Mitochondrial Rho family 1 (Miro1) | 5e-04 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 5e-04 | |
| TIGR03156 | 351 | TIGR03156, GTP_HflX, GTP-binding protein HflX | 5e-04 | |
| cd04172 | 182 | cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | 5e-04 | |
| cd04131 | 176 | cd04131, Rnd, Rho family GTPase subfamily Rnd incl | 6e-04 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 8e-04 | |
| cd09915 | 175 | cd09915, Rag, Rag GTPase subfamily of Ras-related | 0.001 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 0.001 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 0.001 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 0.002 | |
| cd01855 | 191 | cd01855, YqeH, Circularly permuted YqeH GTPase | 0.002 | |
| cd04102 | 204 | cd04102, RabL3, Rab GTPase-like family 3 (Rab-like | 0.004 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 0.004 | |
| COG0532 | 509 | COG0532, InfB, Translation initiation factor 2 (IF | 0.004 | |
| cd01875 | 191 | cd01875, RhoG, Ras homolog family, member G (RhoG) | 0.004 | |
| cd04174 | 232 | cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | 0.004 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 306 bits (787), Expect = e-108
Identities = 122/159 (76%), Positives = 140/159 (88%)
Query: 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
E++L+GLQN+GKT+LVNVIA+G +SED IPTVGFNMRKVTKGNVTIK+WDLGGQPRFRSM
Sbjct: 1 EITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSM 60
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
WERYCR V+AIVYVVDAAD + L V+++ELHDLL KPSL GIPLLVLGNK D P ALS +
Sbjct: 61 WERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD 120
Query: 141 DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
+L+EQM LKSITDREV CY IS K TNID V+DWL+KH
Sbjct: 121 ELIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWLIKH 159
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 2e-57
Identities = 57/156 (36%), Positives = 93/156 (59%), Gaps = 1/156 (0%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWER 83
++GL AGKT+++ + G IPT+GFN+ V NV +WD+GGQ + R +W+
Sbjct: 4 MLGLDGAGKTTILYKLK-LGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLWKH 62
Query: 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLM 143
Y +++VVD++D + + +++ELH LL++ L G PLL+L NK D P AL++ +L+
Sbjct: 63 YYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESELI 122
Query: 144 EQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
E +GL+SI R S +D +DWL++
Sbjct: 123 ELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 7e-47
Identities = 66/173 (38%), Positives = 99/173 (57%), Gaps = 2/173 (1%)
Query: 7 FLNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVT 65
FL+ L LF + +EM + ++GL NAGKT+++ + G IPT+GFN+ VT NV
Sbjct: 1 FLSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVT-TIPTIGFNVETVTYKNVK 59
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 125
+WD+GGQ R +W Y A+++VVD+AD D + ++ ELH LL++ L PLL
Sbjct: 60 FTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLL 119
Query: 126 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+L NK D P A+S+ ++ E +GL + DR S +D +DWL
Sbjct: 120 ILANKQDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSN 172
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Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 2e-43
Identities = 60/154 (38%), Positives = 96/154 (62%), Gaps = 2/154 (1%)
Query: 3 LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK 61
+++ F N L SL +K+E ++ +GL NAGKT+L++++ ++ +PT+ ++T
Sbjct: 2 IFDWFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSEELTI 60
Query: 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNG 121
GNV +DLGG + R +W+ Y V IV++VDAAD + S+ EL LL+ L
Sbjct: 61 GNVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELAN 120
Query: 122 IPLLVLGNKIDKPEALSKEDLMEQMGLKSITDRE 155
+P+L+LGNKIDKP A+S+E+L E +GL T +
Sbjct: 121 VPILILGNKIDKPGAVSEEELREALGLYGTTTGK 154
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-37
Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 9/176 (5%)
Query: 8 LNWLRSL--FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDM---IPTVGFNMRKVTKG 62
L+ LR L +QE+ + L+GL NAGKT+++ +A SED+ PT GFN++ V
Sbjct: 2 LSILRKLKPSSRQEVRILLLGLDNAGKTTILKQLA----SEDISHITPTQGFNIKNVQAD 57
Query: 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 122
+ +WD+GGQ + R W Y ++YV+D+AD + EL +LL + L G+
Sbjct: 58 GFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGV 117
Query: 123 PLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
P+LV NK D A E++ E + L I DR S K + ++W+ K
Sbjct: 118 PVLVFANKQDLLTAAPAEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWVCK 173
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 3e-36
Identities = 63/160 (39%), Positives = 89/160 (55%), Gaps = 13/160 (8%)
Query: 24 LIGLQNAGKTSLV------NVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
++GL AGKT+++ V+ T IPT+GFN+ VT N+ ++WDLGGQ
Sbjct: 4 ILGLDGAGKTTILYRLQVGEVVTT-------IPTIGFNVETVTYKNLKFQVWDLGGQTSI 56
Query: 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137
R W Y AI+YVVD+ D D L +S+SELH +L + L LLV NK D P AL
Sbjct: 57 RPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGAL 116
Query: 138 SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177
S+ ++ E++GL + DR + S +D +DWLV
Sbjct: 117 SEAEVAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLV 156
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 5e-35
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 9/164 (5%)
Query: 24 LIGLQNAGKTSLVN------VIATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQPR 76
++GL NAGKT+ + G + I PTVG N+ + G + WDLGGQ
Sbjct: 4 ILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQEE 63
Query: 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
RS+W++Y ++YV+D+ D + S+S +++ +L G+PLLVL NK D P+A
Sbjct: 64 LRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLPDA 123
Query: 137 LSKEDLME--QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
LS ++ E + I R+ +S ++ I+WLV
Sbjct: 124 LSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLVD 167
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 4e-34
Identities = 51/163 (31%), Positives = 91/163 (55%), Gaps = 6/163 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
++ ++GL AGKTSL++ +++ E ++PT GFN + + ++L ++GG R
Sbjct: 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKY 60
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
W+RY +++VVD+AD + LP++R ELH LL P +PL+VL NK D P A S +
Sbjct: 61 WKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPP--DLPLVVLANKQDLPAARSVQ 118
Query: 141 DLMEQMGLKSIT-DREV---CCYMISCKNSTNIDTVIDWLVKH 179
++ +++ L+ I R + + + ++ V D L +
Sbjct: 119 EIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQL 161
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-33
Identities = 51/155 (32%), Positives = 94/155 (60%), Gaps = 3/155 (1%)
Query: 25 IGLQNAGKTSLVNVIATGGY-SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWER 83
+GL N+GKT+++N + S++++PTVGFN+ KGN++ +D+ GQ ++R +WE
Sbjct: 5 LGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGLWEH 64
Query: 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL--NGIPLLVLGNKIDKPEALSKED 141
Y + + I++V+D++D + V++ EL LL+ P + IP+L NK+D P+AL+
Sbjct: 65 YYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALTAVK 124
Query: 142 LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176
+ + + L++I D+ + S +D +DWL
Sbjct: 125 ITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWL 159
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-33
Identities = 60/179 (33%), Positives = 99/179 (55%), Gaps = 7/179 (3%)
Query: 7 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTI 66
LF +EM + ++GL AGKT+++ + G S IPT+GFN+ VT N++
Sbjct: 1 MGKLFSKLFGNKEMRILMVGLDAAGKTTILYKLKLG-ESVTTIPTIGFNVETVTYKNISF 59
Query: 67 KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 126
+WD+GGQ + R +W Y +++VVD+ D D + +R ELH +L++ L +LV
Sbjct: 60 TVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILV 119
Query: 127 LGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV---IDWLVKHSKS 182
NK D P+A+ ++ E++GL SI DR + I +T+ D + + WL + K+
Sbjct: 120 FANKQDLPDAMKAAEITEKLGLHSIRDRN---WYIQPTCATSGDGLYEGLTWLSNNLKN 175
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 6e-33
Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 1/144 (0%)
Query: 11 LRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
L LF +EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD
Sbjct: 1 LSKLFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWD 59
Query: 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
+GGQ + R +W Y +++VVD+AD D + +R ELH +++ + LLV NK
Sbjct: 60 VGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANK 119
Query: 131 IDKPEALSKEDLMEQMGLKSITDR 154
D P+A+ ++ E++GL I DR
Sbjct: 120 QDLPDAMKPHEIQEKLGLTRIRDR 143
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 7e-33
Identities = 63/186 (33%), Positives = 103/186 (55%), Gaps = 7/186 (3%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
MGLW + +SLF K+E+ + ++GL AGKT+++ + G IPT+GFN+ V
Sbjct: 1 MGLWLSSA--FKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVE 57
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
N+ +WD+GGQ + R +W Y + + +++VVD+ D + + +R EL +LS+ L
Sbjct: 58 YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELR 117
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST--NIDTVIDWLVK 178
LLV NK D P A+S ++ E++GL S+ R Y+ C +T + +DWL
Sbjct: 118 DAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRN--WYIQGCCATTAQGLYEGLDWLSA 175
Query: 179 HSKSKS 184
+ K
Sbjct: 176 NIKKSM 181
|
Length = 182 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 9e-32
Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 1/160 (0%)
Query: 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
EM + ++GL NAGKT+++ G + PT+GFN++ + + +WD+GGQ R
Sbjct: 14 EMRILMLGLDNAGKTTILKKF-NGEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSLR 72
Query: 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138
S W Y + A+++VVD++D L + EL LL + L G LL+ NK D P ALS
Sbjct: 73 SYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGALS 132
Query: 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
E++ E + L SI + S N+ IDWLV
Sbjct: 133 PEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWLVD 172
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 1e-31
Identities = 61/187 (32%), Positives = 105/187 (56%), Gaps = 9/187 (4%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
MGL +F LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V
Sbjct: 1 MGL--SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE 57
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
N++ +WD+GGQ + R +W Y + +++VVD+ D D + +R ELH +L++ L
Sbjct: 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 117
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV---IDWLV 177
LLV NK D P A++ ++ +++GL S+ R + I +T+ + + +DWL
Sbjct: 118 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH---WYIQSTCATSGEGLYEGLDWLS 174
Query: 178 KHSKSKS 184
+ +K+
Sbjct: 175 NNIANKA 181
|
Length = 181 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 9e-31
Identities = 46/133 (34%), Positives = 82/133 (61%), Gaps = 6/133 (4%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDM--IPTVGFNMRKV-TKGNVTIKLWDLGGQPRFRSM 80
L+GL +AGK++L+ + ++E + IPTVGFN+ + + ++++ +WD+GGQ + R++
Sbjct: 4 LLGLDSAGKSTLLYKLK---HAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
W+ Y +VYVVD++D L S+ EL +L + G+P+++L NK D P AL+ E
Sbjct: 61 WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120
Query: 141 DLMEQMGLKSITD 153
++ + LK
Sbjct: 121 EITRRFKLKKYCS 133
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-30
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 18/159 (11%)
Query: 11 LRSLFFKQ-EMELSLIGLQNAGKTSLV------NVIATGGYSEDMIPTVGFNMRKVTKGN 63
L SLFF + E ++ ++GL NAGKT+++ V+ T PT+G N+ ++ N
Sbjct: 6 LWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTS-------PTIGSNVEEIVYKN 58
Query: 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 123
+ +WD+GGQ RS W Y A++ V+D+ D + LP+++ EL+ +L+ L
Sbjct: 59 IRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV 118
Query: 124 LLVLGNKIDKPEALSKEDLMEQMGLKSITDRE----VCC 158
LLVL NK D A++ ++ E +GL SI D CC
Sbjct: 119 LLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCC 157
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-29
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 81
L +GL NAGKT+LV+ + G + + PTVGF K+ + ++DLGG FR +W
Sbjct: 2 LLTVGLDNAGKTTLVSALQ-GEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIW 60
Query: 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 141
Y +V+VVD++D D + + L +LL P ++G P+LVL NK DK AL D
Sbjct: 61 VNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGAD 120
Query: 142 LMEQMGLKSITDREVC-CYMISCKNSTNIDTVID 174
++E + L+ + + C++ C + ID
Sbjct: 121 VIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKID 154
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-29
Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 13/166 (7%)
Query: 20 MELSLIGLQNAGKTSLV------NVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73
M + ++GL AGKT+++ ++ T IPT+GFN+ V N++ +WD+GG
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-------IPTIGFNVETVEYKNISFTVWDVGG 53
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133
Q + R +W Y + +++VVD+ D + + +R EL +L++ L LLV NK D
Sbjct: 54 QDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDL 113
Query: 134 PEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
P A+S ++ +++GL S+ +R + + +DWL +
Sbjct: 114 PNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNN 159
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 2e-26
Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 6/150 (4%)
Query: 8 LNWLRSLF-----FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKG 62
+W + + + ++ +GL NAGKT+L++++ ++ PT ++ G
Sbjct: 1 FDWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSEELAIG 59
Query: 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 122
N+ +DLGG + R +W+ Y V+ IVY+VDA D + S+ EL LLS L +
Sbjct: 60 NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATV 119
Query: 123 PLLVLGNKIDKPEALSKEDLMEQMGLKSIT 152
P L+LGNKID P A S+++L +GL + T
Sbjct: 120 PFLILGNKIDAPYAASEDELRYALGLTNTT 149
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 2e-26
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 6/136 (4%)
Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGN---VTIKLWDLG 72
Q + + ++GL +AGKT+++ + + +PT GFN K V+ GN VT WD+G
Sbjct: 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNAKGVTFHFWDVG 60
Query: 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
GQ + R +W+ Y R IV+VVD+ D + + +++ELH + G+P+LVL NK D
Sbjct: 61 GQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQD 120
Query: 133 KPEALSKEDLMEQMGL 148
P AL ++ + + L
Sbjct: 121 LPNALPVSEVEKLLAL 136
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 5e-23
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 15/165 (9%)
Query: 24 LIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVT--KGNVTIKLWDLGGQPRFR 78
++G GK+SL+N + G S+ T ++ KG V + L D G F
Sbjct: 2 VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFG 61
Query: 79 SMWE-----RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133
+ R I+ VVD+ D ++ ++ + L K GIP++++GNKID
Sbjct: 62 GLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRK---EGIPIILVGNKIDL 118
Query: 134 PEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
E E+L+ L I V + +S K +D + + L++
Sbjct: 119 LEEREVEELLRLEELAKILG--VPVFEVSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 5e-22
Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWD 70
F +E ++ ++G GKT+L+N + + E PT+G T + N+ ++LWD
Sbjct: 1 LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60
Query: 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
GQ +RS+ Y R + I+ V D+ ++ E + L + + + +P+L++GNK
Sbjct: 61 TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120
Query: 131 ID-KPEALSKEDLMEQMGLKSITDRE 155
ID E S E+++ Q+ + +
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVL 146
|
Length = 219 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 1e-21
Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 12/161 (7%)
Query: 25 IGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY 84
+GL AGKT+++ + + + IPT+GFN+ V N+ +WD+GG+ + R +W+ Y
Sbjct: 5 LGLDGAGKTTILFKLKQDEFMQP-IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHY 63
Query: 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLME 144
A+V+V+D++ D + + SEL LL++ L LL+ NK D ALS E++ E
Sbjct: 64 YLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTE 123
Query: 145 QMGLKSITDREVCC----YMISC--KNSTNIDTVIDWLVKH 179
+ L ++CC Y+ C ++ + +DWL +
Sbjct: 124 LLSL-----HKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 5e-20
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GKTSL+ +SE+ T+G F + + +KL WD GQ RFRS
Sbjct: 5 LIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQERFRS 64
Query: 80 MWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
+ Y R +VY V + ++NL +EL + IP++++GNK D
Sbjct: 65 ITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAP----PNIPIILVGNKSDLE-- 118
Query: 137 LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+ + + + + + + S K N+D + L +
Sbjct: 119 -DERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 1e-19
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 26/168 (15%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
L+G GK+SL+ + E+ IPT+G F + + T+KL WD GQ RFR+
Sbjct: 4 LVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRA 63
Query: 80 MWERYCRAVSAI--VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID--KP 134
+ Y R VY + ++N+ E+ +P++++GNK D
Sbjct: 64 LRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHAD----ENVPIVLVGNKCDLEDQ 119
Query: 135 EALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+S E+ L +++GL +M S K + N++ + L +
Sbjct: 120 RVVSTEEGEALAKELGLP---------FMETSAKTNENVEEAFEELAR 158
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 4e-18
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 20/168 (11%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRF 77
+ LIG GK+SL++ G +SE T+G F + + +KL WD GQ RF
Sbjct: 3 IILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF 62
Query: 78 RSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
RS+ Y R AV A+ VY + + ++NL EL + + + ++++GNK D
Sbjct: 63 RSITSSYYRGAVGALLVYDITNRESFENLENWLKELREY----ASPNVVIMLVGNKSDLE 118
Query: 135 E--ALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVKH 179
E +S+E+ + + S K +TN++ + L +
Sbjct: 119 EQRQVSREE-----AEA-FAEEHGLPFFETSAKTNTNVEEAFEELARE 160
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 6e-16
Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 24/173 (13%)
Query: 19 EMELSLIGLQNAGKTSLVNVIATGGYSED-MIPTVGFN--MRKVTKGNVTIK--LWDLGG 73
E+++ ++G N GK++L+N + S P N + + T K L D G
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADY-----DNLPVSRSELHDLLSKPSLNGIPLLVLG 128
Q + ++ Y RAV + + V D + L E+ G+P++++G
Sbjct: 61 QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES----GVPIILVG 116
Query: 129 NKIDKPEALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
NKID +A K L ++ + I +S + NID+ +
Sbjct: 117 NKIDLRDAKLKTHVAFLFAKLNGEPII-------PLSAETGKNIDSAFKIVEA 162
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 3e-15
Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 11/126 (8%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GK+SL+ + ED+ T+G F ++ VT +KL WD GQ RFR+
Sbjct: 5 LIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQERFRT 64
Query: 80 MWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R ++ V D +DNL +EL D S + + +LV GNKIDK
Sbjct: 65 LTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNEL-DTYSTNP-DAVKMLV-GNKIDKENR 121
Query: 136 ALSKED 141
+++E+
Sbjct: 122 EVTREE 127
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-14
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
L+G ++GKT+L + TG + P V +KG + L D+ G + R
Sbjct: 5 LLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKK-LTLVDVPGHEKLRDK 63
Query: 81 -WERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSL--NGIPLLVLGNKID---- 132
E ++ AIV+VVD+A + N+ L+D+L+ N IP+L+ NK D
Sbjct: 64 LLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQDLFTA 123
Query: 133 KPEALSKEDL 142
KP KE L
Sbjct: 124 KPAKKIKELL 133
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 6e-13
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFR- 78
+IG N GKT L G + E T+G + R+ T + ++LWD GQ RFR
Sbjct: 7 VIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK 66
Query: 79 SMWERYCRAVSAIVYVVD---AADYDNLP--VSRSELHDLLSKPSLNGIPLLVLGNKID 132
SM + Y R V A+V+V D A + +LP + E H L ++ +P +++GNK D
Sbjct: 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNE-----VPRILVGNKCD 120
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 7e-13
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 17/141 (12%)
Query: 19 EMELSLIGLQNAGKTSLVN------VIATGGYSEDMIP------TVGFNMRKVT-KGNVT 65
E ++ +IG AGKT+ V ++ T + + TV + + +
Sbjct: 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTG 69
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 125
+ L+ GQ RF+ MWE R + +VD++ P++ + S N IP++
Sbjct: 70 VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR----PITFHAEEIIDFLTSRNPIPVV 125
Query: 126 VLGNKIDKPEALSKEDLMEQM 146
V NK D +AL E + E +
Sbjct: 126 VAINKQDLFDALPPEKIREAL 146
|
Length = 187 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-12
Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 14/161 (8%)
Query: 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WD 70
FK L LIG GK+ L+ A Y+E I T+G F +R + T+KL WD
Sbjct: 2 LFK----LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWD 57
Query: 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
GQ RFR++ Y R I+ V D D ++ + L ++ S N LLV GNK
Sbjct: 58 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV-GNK 116
Query: 131 IDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNID 170
D L+ + +++ K D ++ S KN+TN++
Sbjct: 117 CD----LTDKKVVDYTEAKEFADELGIPFLETSAKNATNVE 153
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32) | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-12
Identities = 55/176 (31%), Positives = 80/176 (45%), Gaps = 33/176 (18%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVT---KGNVTIKLWDLGGQPRFR 78
+IG GKTS++ G +S+ T+G F ++ + V ++LWD+ GQ RF
Sbjct: 5 VIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG 64
Query: 79 SMWERYCR-AVSAIVYVVDAADYDNLPVSRSEL--------HDLLSKPSLNG---IPLLV 126
M Y + AV AI+ V D V+R DL SK +L IP L+
Sbjct: 65 GMTRVYYKGAVGAII-VFD--------VTRPSTFEAVLKWKADLDSKVTLPNGEPIPALL 115
Query: 127 LGNKIDKPEALSKEDLM---EQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
L NK D L KE L EQM + + + S K + NI+ + +LVK+
Sbjct: 116 LANKCD----LKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKN 167
|
Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 3e-12
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GKT LV G + T+G F ++ V IKL WD GQ RFRS
Sbjct: 12 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS 71
Query: 80 MWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
+ + Y R+ +A++ D + LP E+ + + +++GNKID E
Sbjct: 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVIT----ILVGNKIDLAE- 126
Query: 137 LSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNID 170
+ ++ +Q + +D + Y+ S K S N++
Sbjct: 127 --RREVSQQRA-EEFSDAQDMYYLETSAKESDNVE 158
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9) | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 5e-12
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 16/166 (9%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG---FNMRKVTKGN-VTIK 67
+S K + L+G GK+SL+N T + + T+G N G+ VT++
Sbjct: 2 KSSLLK----VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQ 57
Query: 68 LWDLGGQPRFRSMWERYCRA--VSAIVYVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPL 124
+WD GQ RFRS+ + R + + VD + + NL + E P
Sbjct: 58 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 117
Query: 125 LVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNI 169
++LGNKID PE + + D Y S K++TN+
Sbjct: 118 VILGNKIDIPERQVSTEEAQAW----CRDNGDYPYFETSAKDATNV 159
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-11
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 24/176 (13%)
Query: 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GK+ L+ + ++ I T+G F +R + IKL WD GQ
Sbjct: 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63
Query: 76 RFRSMWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
RFR++ Y R I+ V D D ++N+ + + S + +++GNK D
Sbjct: 64 RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHAS----EDVERMLVGNKCD 119
Query: 133 KPE--ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
E +SKE+ L + G+K + S K + N++ L K K
Sbjct: 120 MEEKRVVSKEEGEALAREYGIKFLE--------TSAKANINVEEAFLTLAKDILKK 167
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 6e-11
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTV--GFNMRKVT--KGNVTIKLWDLGGQPRFRS 79
L+G GKTSLV ++E T F + V + + +WD GQ R+ +
Sbjct: 5 LLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA 64
Query: 80 MWERYCR-AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL-NGIPLLVLGNKIDKPE-- 135
+ Y R A AI+ V D D D+ + + +L K N I L+++GNKID
Sbjct: 65 LGPIYYRDADGAIL-VYDITDADSFQKVKKWIKEL--KQMRGNNISLVIVGNKIDLERQR 121
Query: 136 ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
+SK + + +G K + S K I+ + L K
Sbjct: 122 VVSKSEAEEYAKSVGAKH--------FETSAKTGKGIEELFLSLAKR 160
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-10
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRF 77
L L+G + GK+S+V +SE+ T+G F + V + T+K WD GQ R+
Sbjct: 4 LVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY 63
Query: 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
RS+ Y R +A + V D ++ ++S + +L N + L GNK D
Sbjct: 64 RSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALA-GNKAD 117
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7) | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-10
Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 15/159 (9%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRS 79
++G GKTSL+N +S T+G F ++VT + VT+++WD GQ RF+S
Sbjct: 5 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQERFQS 64
Query: 80 MWERYCRAVSAIVYVVD---AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ + R V V D +++L R E S P +VLGNKID E
Sbjct: 65 LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEEK 124
Query: 136 -ALSKEDLMEQ-MGLKSITDREVCCYMISCKNSTNIDTV 172
+S + + +I E S K + N+D
Sbjct: 125 RQVSTKKAQQWCKSKGNIPYFET-----SAKEAINVDQA 158
|
Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-10
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG N GKT +V +G +SE T+G F M+ + +KL WD GQ RFR+
Sbjct: 8 LIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRT 67
Query: 80 MWERYCRAVSAIVYVVD---AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
+ + Y R+ + + D + ++++P + + + K + + LL++GNK D E
Sbjct: 68 ITQSYYRSANGAIIAYDITRRSSFESVP---HWIEE-VEKYGASNVVLLLIGNKCDLEE- 122
Query: 137 LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
+E L E+ + + S K S+N++
Sbjct: 123 -QREVLFEEACTLAEHYGILAVLETSAKESSNVEEA 157
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 6e-10
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRF 77
L +G Q+ GKTS++ + T+G F + + + T++L WD GQ RF
Sbjct: 3 LVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQERF 62
Query: 78 RSMWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
RS+ Y R S V V D + +DN + D + N + ++++GNK D
Sbjct: 63 RSLIPSYIRDSSVAVVVYDITNRQSFDNT----DKWIDDVRDERGNDVIIVLVGNKTDLS 118
Query: 135 E--ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169
+ +S E+ ++ + E S K N+
Sbjct: 119 DKRQVSTEEGEKKAKENNAMFIET-----SAKAGHNV 150
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 3e-09
Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 21/154 (13%)
Query: 24 LIGLQNAGKTSL-VNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFR 78
LIG GK+SL V+ I++ ED+ PT+G F ++++T G +KL WD GQ RFR
Sbjct: 19 LIGDSGVGKSSLLVSFISSS--VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR 76
Query: 79 SMWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP- 134
++ Y R I+ V D + NL + +L S + + + +LV GNK+D+
Sbjct: 77 TLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYST-NQDCVKMLV-GNKVDRES 134
Query: 135 -EALSKEDLMEQMGLKSITDREVCCYMISCKNST 167
+S+E E M L +E C + C T
Sbjct: 135 ERDVSRE---EGMALA----KEHGCLFLECSAKT 161
|
Length = 211 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 3e-09
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 28/162 (17%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
LIG GK++L++ ++ D T+G F R + TIK +WD GQ R+R+
Sbjct: 8 LIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQERYRA 67
Query: 80 MWERYCR-AVSA-IVY-VVDAADYDNLPVSR--SELHDLLSKPSLNGIPLLVLGNKIDKP 134
+ Y R AV A +VY + + ++N V R EL D + + I ++++GNK D
Sbjct: 68 ITSAYYRGAVGALLVYDITKKSTFEN--VERWLKELRDH----ADSNIVIMLVGNKSDLR 121
Query: 135 E--ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDT 171
A+ E+ E+ GL I E S + TN++
Sbjct: 122 HLRAVPTEEAKAFAEKNGLSFI---ET-----SALDGTNVEE 155
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-09
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK--GNVTIKL--WDLGGQPRF 77
+ +IG + +GK+SL++ + G + + + G + T T L WD GG+
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREEL 61
Query: 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS--KPSLNGIPLLVLGNKI 131
+ + + AI+ V D D ++L S L L + IP++++GNK+
Sbjct: 62 KFEHIIFMKWADAILLVYDLTDRESLN-EVSRLIAWLPNLRKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1) | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 6e-09
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 20/107 (18%)
Query: 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RKVTKGNVTI--KLWDLGGQP 75
+++ L+G GKTSL+ G + E+ I T+G N + ++ I +WDLGGQ
Sbjct: 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60
Query: 76 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 122
F +M C+ AI++ + DL K +LN I
Sbjct: 61 EFINMLPLVCKDAVAILF----------------MFDLTRKSTLNSI 91
|
Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 7e-09
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+ L++ + +D T+G F R V G ++KL WD GQ RFRS
Sbjct: 5 IIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQERFRS 64
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
+ Y R + + V D ++ + L D + S + + +LV GNK D +
Sbjct: 65 VTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILV-GNKKDLED 119
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-08
Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 23/169 (13%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK-----GNVTIKLWDLGG----- 73
+ G N GK+SL+N + G + P G V K + L D G
Sbjct: 2 IFGRPNVGKSSLLNAL-LGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEEG 60
Query: 74 ---QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
+ R + RA ++ VVD+ D PV LL + G P+L++ NK
Sbjct: 61 GLGRERVEEARQVADRA-DLVLLVVDS---DLTPVEEEAKLGLLRE---RGKPVLLVLNK 113
Query: 131 IDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
ID +E+L+ + L+ + D V +S ID + + +
Sbjct: 114 IDLVPESEEEELLRERKLELLPDLPVI--AVSALPGEGIDELRKKIAEL 160
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-08
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 25 IGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNV--TIKLWDLGGQPRFRSM 80
+G + GKT L+N + ++ T+G F M + V +++LWD GQ RF+ +
Sbjct: 6 VGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCI 65
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID--KPEALS 138
Y R AI+ V D D +L +R L D L + + + L ++G K D P +
Sbjct: 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYA 125
Query: 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNI 169
LMEQ +K + + + +S N+
Sbjct: 126 ---LMEQDAIKLAREMKAEYWAVSALTGENV 153
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-08
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPR 76
+L +IG GK+SL+ A +S I T+G F +R V +KL WD GQ R
Sbjct: 8 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67
Query: 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
FR++ Y R ++ V D + ++ + L ++ + + + + +++GNK D PE
Sbjct: 68 FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEI--EQNCDDVCKVLVGNKNDDPE 124
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-08
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 24 LIGLQNAGKTSLVNVIATGGY-SEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFR 78
L+G GKT L+ G + + I TVG F + VT V +KL WD GQ RFR
Sbjct: 5 LVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQERFR 64
Query: 79 SMWERYCRAVSAIVYVVDA---ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
S+ Y R A++ + D + +DN+ +E+ + + +++LGNK D
Sbjct: 65 SVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSD----VVIMLLGNKAD 117
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 4e-08
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 31 GKTSLVNVIATGGYSEDMIPTVG--FNMRKVT---KGNVTIKLWDLGGQPRFRSMWERYC 85
GKTSL+ A G+ + T+G F R++T NVT+++WD+GGQ M ++Y
Sbjct: 12 GKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQQIGGKMLDKYI 71
Query: 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLS---KPSLNGI--PLLVL-GNKIDKPE 135
A+ V D + S L D LS K + P +VL GNK D
Sbjct: 72 YGAQAVCLVYDITNS----QSFENLEDWLSVVKKVNEESETKPKMVLVGNKTDLEH 123
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 7e-08
Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 20/170 (11%)
Query: 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN-----VTIKLWDLGG 73
E +L L+G GKTSL + + D T G N++ + + +WD GG
Sbjct: 1 EAKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGG 60
Query: 74 QPRFRSMWERYC--RAVSAIVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
Q + + + + R++ +V+ + + +P ++ P++++G
Sbjct: 61 QEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVS-----PVILVGTH 115
Query: 131 ID--KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
ID E + K+ L ++ +I + +SCKN I + + K
Sbjct: 116 IDESCDEDILKKALNKKFP--AIINDIH---FVSCKNGKGIAELKKAIAK 160
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-07
Identities = 40/153 (26%), Positives = 61/153 (39%), Gaps = 18/153 (11%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGN-VTIKLWDLGGQPRFRS 79
L+G GK+ LV GY + T + K +G + + WD GQ RF++
Sbjct: 5 LLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT 64
Query: 80 MWERYCRAVSAIVYVVDA---ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
M Y A + V D Y NL EL + +P IP +V+ NKID +
Sbjct: 65 MHASYYHKAHACILVFDVTRKITYKNLSKWYEELRE--YRPE---IPCIVVANKIDLDPS 119
Query: 137 LSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169
++ Q + Y +S + TN+
Sbjct: 120 VT------QKKFNFAEKHNLPLYYVSAADGTNV 146
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 2e-07
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT---KGN-VTIKLWDLGGQP 75
+++ +IG + GKTSL+ + E TVG + + T +G + +++WD GQ
Sbjct: 1 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 60
Query: 76 RFRSMWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
RF S+ Y R+ I+ V D +D+LP + ++ K + LL++GNK+D
Sbjct: 61 RFNSITSAYYRSAKGIILVYDITKKETFDDLP----KWMKMIDKYASEDAELLLVGNKLD 116
Query: 133 KPEALSKEDLMEQMGLK---SITDREVCCYMISCKNSTNIDTVIDWLV 177
+ ++ Q G K IT C S K++ N+D + LV
Sbjct: 117 ---CETDREITRQQGEKFAQQITGMRFC--EASAKDNFNVDEIFLKLV 159
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-07
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 18/166 (10%)
Query: 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPR 76
+L +IG + GKTS + A ++ + TVG F ++ V + + IKL WD GQ R
Sbjct: 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62
Query: 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+R++ Y R + + D + ++ + + + N +LV GNK D +
Sbjct: 63 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILV-GNKCDMEDE 121
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177
+S E L +Q+G + + S K + N+ V + LV
Sbjct: 122 RVVSAERGRQLADQLGFEF--------FEASAKENINVKQVFERLV 159
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-07
Identities = 36/179 (20%), Positives = 60/179 (33%), Gaps = 58/179 (32%)
Query: 31 GKTSLVNVIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRFRSMWERYCRA 87
GKT L+ V T + ED +PTV N +V V + LWD GQ
Sbjct: 10 GKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQE------------ 57
Query: 88 VSAIVYVVDAADYDNL-P---------------VSRSELHDLLSK--PSLN----GIPLL 125
DYD L P S + ++ K P + +P++
Sbjct: 58 -----------DYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPII 106
Query: 126 VLGNKIDKPEALSKEDLMEQMGLKSITDREV---------CCYM-ISCKNSTNIDTVID 174
++G K+D S + + + + +T + Y+ S + V +
Sbjct: 107 LVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFE 165
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174 |
| >gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 6e-07
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 23/164 (14%)
Query: 25 IGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSM 80
+G GKT+ V TG + + + T+G + + +G + +WD GQ +F +
Sbjct: 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60
Query: 81 WE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137
+ Y + AI+ V Y N+P H L + N IP+++ GNK+D +
Sbjct: 61 RDGYYIQGQCAIIMFDVTARVTYKNVP----NWHRDLVRVCEN-IPIVLCGNKVDVKD-- 113
Query: 138 SKEDLMEQMGLKSIT---DREVCCYMISCKNSTNIDTVIDWLVK 178
++ KSIT + + Y IS K++ N + WL +
Sbjct: 114 ------RKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 151
|
Ran is involved in the active transport of proteins through nuclear pores. Length = 200 |
| >gnl|CDD|206666 cd01878, HflX, HflX GTPase family | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 7e-07
Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 54/185 (29%)
Query: 23 SLIGLQNAGKTSLVNVIATGG--YSEDMI-----PTVGFNMRKVT---KGNVTI------ 66
+L+G NAGK++L N + TG +ED + PT R++ V +
Sbjct: 45 ALVGYTNAGKSTLFNAL-TGADVLAEDQLFATLDPTT----RRIKLPGGREVLLTDTVGF 99
Query: 67 --KLWDLGGQPR-----FRSMWERYCRAVSA--IVYVVDAADYDNLPVSRSEL---HDLL 114
L P FRS E A +++VVDA+D P ++ ++L
Sbjct: 100 IRDL------PHQLVEAFRSTLEE---VAEADLLLHVVDASD----PDREEQIETVEEVL 146
Query: 115 SKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174
+ + IP++++ NKID + E+ + ++ IS K +D + +
Sbjct: 147 KELGADDIPIILVLNKIDLLDDEELEERLRAGRPDAV--------FISAKTGEGLDLLKE 198
Query: 175 WLVKH 179
+ +
Sbjct: 199 AIEEL 203
|
HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204 |
| >gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 45/183 (24%)
Query: 31 GKTSLVNVIATGGYSEDMIPTVGFN-MRKVTKGN---VTIKLWDLGGQPRFRSMWERYCR 86
GKT L+ V A G + E+ +PTV N + + N + + LWD GQ E Y R
Sbjct: 15 GKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQ-------EDYDR 67
Query: 87 ---------AVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLN----GIPLLVLGNKI 131
V I Y VD + + L ++ K P +N G P++++G K
Sbjct: 68 LRPLSYPDVDVILICYSVD---------NPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKT 118
Query: 132 DKPEALSKEDLMEQMGLKSIT-------DREVCCYM-ISC--KNSTNIDTVIDWLVKHSK 181
D + + + GL+ +T + + I C K N+D V D + +
Sbjct: 119 DLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVAL 178
Query: 182 SKS 184
SKS
Sbjct: 179 SKS 181
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-06
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKLWDLGGQPRFRSMW 81
L+G N GKTSL++ + +D + TVG F +++ N++I WD G+ +F +
Sbjct: 5 LLGDMNVGKTSLLHRYMERRF-KDTVSTVGGAFYLKQWGPYNISI--WDTAGREQFHGLG 61
Query: 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID--KPEALSK 139
YCR +A++ D ++ +L L + + + V+GNK+D + AL+
Sbjct: 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDLTEEGALAG 120
Query: 140 EDLMEQMGLKSITDREV 156
++ + R+V
Sbjct: 121 QEKDAGDRVSPEDQRQV 137
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-06
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 23/170 (13%)
Query: 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQ 74
E +L L+G GKT+ V TG + + IPT+G + G + +WD GQ
Sbjct: 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68
Query: 75 PRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
+F + + Y + AI+ V Y N+P H + + N IP++++GNK+
Sbjct: 69 EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVP----NWHRDIVRVCEN-IPIVLVGNKV 123
Query: 132 DKPEALSKEDLMEQMGLKSIT---DREVCCYMISCKNSTNIDTVIDWLVK 178
D K+ Q+ + IT + + Y IS K++ N + WL +
Sbjct: 124 D-----VKD---RQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
|
Length = 215 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-06
Identities = 33/167 (19%), Positives = 78/167 (46%), Gaps = 19/167 (11%)
Query: 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKV----TKGNVTIKLWDLGG 73
+++ ++G N GK+S++ G +++D T+G F +++ + +V + LWD G
Sbjct: 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60
Query: 74 QPRFRSMWERYCRAVSAIVYV---VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
Q F ++ + Y R A + V D ++ + + ++ IP++++ K
Sbjct: 61 QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEA-----ECGDIPMVLVQTK 115
Query: 131 ID-KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176
ID +A+ + E + + ++ + S K+ N+ + ++L
Sbjct: 116 IDLLDQAVITNEEAEALAKR----LQLPLFRTSVKDDFNVTELFEYL 158
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-06
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
+ GL ++GKTSL ++ TG + P+ + + KG L D G + R
Sbjct: 8 IAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSAAYKY-MLHKGFSF-TLIDFPGHVKLRQK 65
Query: 81 W---ERYCRAVSAIVYVVD-AADYDNLPVSRSELHDLLSKPSL--NGIPLLVLGNKID-- 132
+ ++ IV+VVD A + + L+++LS L NGI +L+ NK +
Sbjct: 66 LLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACNKQESF 125
Query: 133 --KPEALSKEDLMEQMGL 148
+P K+ L +++
Sbjct: 126 TARPPKKIKQALEKEINT 143
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-06
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 23/167 (13%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRF 77
L L+G GKT+ V TG + + + T+G + + +G + +WD GQ +F
Sbjct: 3 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF 62
Query: 78 RSMWERY-CRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
+ + Y + AI+ V Y N+P H L + N IP+++ GNK+D
Sbjct: 63 GGLRDGYYIQGQCAIIMFDVTSRVTYKNVPN----WHRDLVRVCEN-IPIVLCGNKVDIK 117
Query: 135 EALSKEDLMEQMGLKSIT-DREVCC--YMISCKNSTNIDTVIDWLVK 178
+ K K IT R+ Y IS K++ N + WL +
Sbjct: 118 DRKVKP--------KQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR 156
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 4e-06
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 13/120 (10%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKV-TKGNVTIKL--WDLGGQPR 76
L +IG GK+SL+ G ++E PTVG F R + + V IKL WD GQ R
Sbjct: 5 LIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER 64
Query: 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP----LLVLGNKID 132
FRS+ Y R ++ V D + + S +HD L + + P +++G+K D
Sbjct: 65 FRSITRSYYRNSVGVLLVFDITNRE----SFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-06
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 20/158 (12%)
Query: 31 GKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGN-VTIKLWDLGGQPRFRSMWERYCRA 87
GK++L +G + E+ PT+ + + V G T+ + D GQ F +M ++Y R
Sbjct: 11 GKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEFSAMRDQYIRN 70
Query: 88 VSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKEDL 142
+VY + ++ + R ++ + K +P++++GNK D +S E+
Sbjct: 71 GDGFILVYSITSRESFEEIKNIREQILRVKDKED---VPIVLVGNKCDLENERQVSTEEG 127
Query: 143 MEQMGLKSITDREVCC-YM-ISCKNSTNIDTVIDWLVK 178
E C ++ S K + NID + + LV+
Sbjct: 128 EALA-------EEWGCPFLETSAKTNINIDELFNTLVR 158
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 5e-06
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG 147
V +++VVDA + +L K P++++ NKID KE+L+
Sbjct: 85 VDLVLFVVDADEKIG-----PGDEFILEKLKKVKTPVILVLNKIDL--VKDKEELLPL-- 135
Query: 148 LKSITDR----EVCCYMISCKNSTNIDTVIDWLVKH 179
L+ +++ E+ IS N+D ++D + K+
Sbjct: 136 LEELSELMDFAEI--VPISALKGDNVDELLDVIAKY 169
|
Length = 292 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 7e-06
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 23/167 (13%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRF 77
L ++G GKT+ V TG + + PT+G + + G + WD GQ +F
Sbjct: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
Query: 78 RSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
+ + Y AI+ V Y N+P H L + N IP+++ GNK+D
Sbjct: 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPT----WHRDLCRVCEN-IPIVLCGNKVDVK 130
Query: 135 EALSKEDLMEQMGLKSITDREVCC---YMISCKNSTNIDTVIDWLVK 178
Q+ K +T Y IS K++ N + +L +
Sbjct: 131 N--------RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
|
Length = 219 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 1e-05
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 24/122 (19%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQ---PRF 77
++G GKT L+ T + + +PTV ++ G V + LWD GQ R
Sbjct: 5 VVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEYDRL 64
Query: 78 RSMWERYCRA-VSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLN----GIPLLVLGNK 130
R + Y + V + + VD S S ++ +K P + +P++++G K
Sbjct: 65 RPL--SYPQTDVFLLCFSVD---------SPSSFENVKTKWYPEIKHYCPNVPIILVGTK 113
Query: 131 ID 132
ID
Sbjct: 114 ID 115
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 38/193 (19%), Positives = 78/193 (40%), Gaps = 52/193 (26%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNVI------------------ATGGYSEDM----- 48
+S F +++IG N GK++L+N + G Y++D
Sbjct: 2 KSGF------VAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIF 55
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
+ T G + K G ++ W + V +++VVDA+++
Sbjct: 56 VDTPGIHKPKKKLGER-----------MVKAAWSAL-KDVDLVLFVVDASEWIG-----E 98
Query: 109 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM--GLKSITDREVCCYMISCKNS 166
+L + P++++ NKID KEDL+ + + E+ + IS
Sbjct: 99 GDEFILELLKKSKTPVILVLNKIDL--VKDKEDLLPLLEKLKELHPFAEI--FPISALKG 154
Query: 167 TNIDTVIDWLVKH 179
N+D +++++V++
Sbjct: 155 ENVDELLEYIVEY 167
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 2e-05
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
+G V ++LWD GQ RFRS+ Y R +A + V D + + + + D+L++ +
Sbjct: 26 EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD 85
Query: 121 GIPLLVLGNKID 132
I LV GNK D
Sbjct: 86 VIIALV-GNKTD 96
|
Length = 176 |
| >gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-05
Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 30/130 (23%)
Query: 24 LIGLQNAGKTSLVNVI-------------ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
L+GL+ +GK+S+ ++I AT + V F GN+T+ LWD
Sbjct: 4 LMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQS---HVRFL------GNLTLNLWD 54
Query: 71 LGGQPRF-----RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN--GIP 123
GQ F E V ++YV D + + L ++
Sbjct: 55 CPGQDDFMENYLTRQKEHIFSNVGVLIYVFD-VESREYEEDLATLVKIIEALYQYSPNAK 113
Query: 124 LLVLGNKIDK 133
+ VL +K+D
Sbjct: 114 VFVLIHKMDL 123
|
GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230 |
| >gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 35/143 (24%)
Query: 23 SLIGLQNAGKTSLVNVIATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ------- 74
+L+G NAGK++L N + Y D + + I+L D
Sbjct: 196 ALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTR------RIELGDGRKVLLTDTVG 249
Query: 75 ----------PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSEL---HDLLSKPSLNG 121
F+S E + +++VVDA+D P +L D+L++ +
Sbjct: 250 FIRDLPHPLVEAFKSTLEE-VKEADLLLHVVDASD----PEILEKLEAVEDVLAEIGADE 304
Query: 122 IPLLVLGNKIDKPEALSKEDLME 144
IP++++ NKID L E+++
Sbjct: 305 IPIILVLNKIDL---LEDEEILA 324
|
Length = 411 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-05
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 25 IGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSM 80
+G GK+ ++ G + +PT+G + ++KV+ N +++ +DL G P + +
Sbjct: 6 MGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV 65
Query: 81 WERYCRAVSAIVYVVDAAD---YDNLPVSRSELHD-LLSKPSLNGIPLLVLGNKIDKP 134
+ + ++ V D D ++ L E+ ++ I ++V NKID
Sbjct: 66 RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|182934 PRK11058, PRK11058, GTPase HflX; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 20/126 (15%)
Query: 22 LSLIGLQNAGKTSLVNVIATGG-YSED-MIPTVGFNMRKVTKGNV-TIKLWDLGGQPR-- 76
+SL+G NAGK++L N I Y+ D + T+ +R++ +V L D G R
Sbjct: 200 VSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL 259
Query: 77 -------FRSMWERYCRAVSAIVYVVDAADY---DNLPVSRSELHDLLSKPSLNGIPLLV 126
F++ + R + +++VVDAAD +N+ ++ +L + + IP L+
Sbjct: 260 PHDLVAAFKATLQE-TRQATLLLHVVDAADVRVQENI----EAVNTVLEEIDAHEIPTLL 314
Query: 127 LGNKID 132
+ NKID
Sbjct: 315 VMNKID 320
|
Length = 426 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 5e-05
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMR--KVTKGNVTIKLWDLGGQPRF 77
L LIG GKT L+ + I T+G F M+ +V V I++WD GQ R+
Sbjct: 3 LLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY 62
Query: 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDL-----LSKPSLNGIPLLVLGNKID 132
+++ ++Y R I V D + RS H + + + + G+ +++GNK D
Sbjct: 63 QTITKQYYRRAQGIFLVYDISS------ERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD 116
Query: 133 KPEA 136
+ +
Sbjct: 117 EEQK 120
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 6e-05
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 15/134 (11%)
Query: 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQ--- 74
+L ++G GKTSL+ V G + E+ PTV N +V V + LWD GQ
Sbjct: 3 KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62
Query: 75 PRFRSMWERYCRA-VSAIVYVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
R R + Y +A V I + +D D +N+ E +P++++G K D
Sbjct: 63 ERLRPL--SYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPN----VPVILVGLKKD 116
Query: 133 -KPEALSKEDLMEQ 145
+ EA++K +
Sbjct: 117 LRQEAVAKGNYATD 130
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 9e-05
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+ L++ + D T+G F R + IKL WD GQ RFR+
Sbjct: 7 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRA 66
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
+ Y R + + V D S L D + + N + L+ GNK D
Sbjct: 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLI-GNKAD 118
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD-NLPVSR 107
+ T G K + +L+D+GGQ R W V+AI++VV ++YD L
Sbjct: 153 VKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD 212
Query: 108 SE--LHD-------LLSKPSLNGIPLLVLGNKID 132
S L + + + P P+++ NK D
Sbjct: 213 STNRLEESLNLFEEICNSPWFKNTPIILFLNKKD 246
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 1e-04
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 47 DMIPTVGFNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 104
D+ V F R +T N IKL WD GQ FRS+ Y R + + V D +
Sbjct: 36 DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN 95
Query: 105 VSRSELHDLLSKPSLNGIPLLVLGNKID--KPEALSKED 141
S L D + N + ++++GNK D A+S E+
Sbjct: 96 HLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVSTEE 133
|
Length = 210 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 1e-04
Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 65/188 (34%)
Query: 24 LIGLQNAGKTSLVNVIA------------TGGYSEDMIPTVGFNMRKV-TKGNVTIKLWD 70
L+GL NAGK++L++ I+ T ++P +G V + + D
Sbjct: 5 LVGLPNAGKSTLLSAISNAKPKIADYPFTT------LVPNLGV----VRVDDGRSFVIAD 54
Query: 71 LGGQP--------------RF-RSMWERYCRAVSAIVYVVDAADYDNLPVS-----RSEL 110
+ P RF R + ER R +++V+D + D+ PV R+EL
Sbjct: 55 I---PGLIEGASEGKGLGHRFLRHI-ER-TRV---LLHVIDLSGEDD-PVEDYETIRNEL 105
Query: 111 ----HDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNS 166
L KP + +VL NKID +A + + ++++ LK + ++V + IS
Sbjct: 106 EAYNPGLAEKPRI-----VVL-NKIDLLDAEERFEKLKEL-LKELKGKKV--FPISALTG 156
Query: 167 TNIDTVID 174
+D ++
Sbjct: 157 EGLDELLK 164
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 2e-04
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 46 EDMIPTVGFNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL 103
D+ V F R +T IKL WD GQ FRS+ Y R + + V D +
Sbjct: 33 HDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 92
Query: 104 PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED 141
S L D + N +L+ GNK D +S E+
Sbjct: 93 NHLTSWLEDARQHSNSNMTIMLI-GNKCDLESRREVSYEE 131
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 2e-04
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 34/142 (23%)
Query: 20 MELSLIGLQNAGKTSLVN------VIATGGYSEDMIPTVGFNMRKVT------KGNVTIK 67
L+++G +AGK++L+N V+ TG + PT +T V +
Sbjct: 1 FLLAVVGEFSAGKSTLLNALLGEEVLPTG-----VTPTTA----VITVLRYGLLKGVVLV 51
Query: 68 LWD---LGGQPRFRSMW-ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 123
D L + E + A+++V+ A D P++ SE L +G
Sbjct: 52 --DTPGLNSTIEHHTEITESFLPRADAVIFVLSA---DQ-PLTESEREFLKEILKWSGKK 105
Query: 124 LLVLGNKIDKPEALSKEDLMEQ 145
+ + NKID LS+E+L E
Sbjct: 106 IFFVLNKIDL---LSEEELEEV 124
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 25/157 (15%)
Query: 31 GKTSLVNVI----ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR 86
GKTSL++ I G + + +G + G I D G F SM R +
Sbjct: 99 GKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAK 157
Query: 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--------LS 138
V+ IV +V AAD +P + + +S +P++V NKIDKPEA LS
Sbjct: 158 -VTDIVVLVVAADDGVMP----QTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELS 212
Query: 139 KEDLM-EQMGLKSITDREVCCYMISCKNSTNIDTVID 174
+ L+ E G +I +S ID ++D
Sbjct: 213 EYGLVPEDWGGDTIF------VPVSALTGDGIDELLD 243
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587 |
| >gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 3e-04
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 9/156 (5%)
Query: 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG-FNMRKVTKGNVTIKLW-DLGGQPRF 77
++L ++G +GK++LV+ TG Y + P G F + G + L D GG P
Sbjct: 1 LKLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA 60
Query: 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137
++ V A+++V D + H L S +++ IPL+++G + D A
Sbjct: 61 -----QFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQ-DAISAS 114
Query: 138 SKEDLMEQMGLKSITDREVCCYMISCKN-STNIDTV 172
+ + + + D + C Y +C N++ V
Sbjct: 115 NPRVIDDARARQLCADMKRCSYYETCATYGLNVERV 150
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158 |
| >gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 6/153 (3%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSM 80
LIG + GK+SL+ + + + E+ +P V + VT V + D +P+ R+
Sbjct: 7 LIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEITIPADVTPERVPTTIVDTSSRPQDRAN 65
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
R + I V L R++ L+ + + +P++++GNK D + S+
Sbjct: 66 LAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVK-VPIILVGNKSDLRDGSSQA 124
Query: 141 DLMEQMGLKSITDREV-CCYMISCKNSTNIDTV 172
L E+M RE+ C S K N+ V
Sbjct: 125 GLEEEMLPIMNEFREIETCVECSAKTLINVSEV 157
|
Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 5e-04
Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 19/168 (11%)
Query: 25 IGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGN------------VTIKLWD 70
+G GKT+ + ++ I TVG F ++V + V ++LWD
Sbjct: 10 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHLQLWD 69
Query: 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
GQ RFRS+ + R + + D + R+ + L + ++++GNK
Sbjct: 70 TAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVLIGNK 129
Query: 131 IDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLV 177
D L + + + + + D+ Y S N++ ++ L+
Sbjct: 130 AD----LPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLL 173
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|234125 TIGR03156, GTP_HflX, GTP-binding protein HflX | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 5e-04
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 28/130 (21%)
Query: 23 SLIGLQNAGKTSLVNVIATGG-YSEDMI-----PTVGFNMRKVT-KGNVTIKLWDLGGQP 75
+L+G NAGK++L N + Y+ D + PT R++ + L D G
Sbjct: 193 ALVGYTNAGKSTLFNALTGADVYAADQLFATLDPT----TRRLDLPDGGEVLLTDTVGFI 248
Query: 76 R---------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSEL---HDLLSKPSLNGIP 123
R FR+ E A +++VVDA+D P ++ +L + IP
Sbjct: 249 RDLPHELVAAFRATLEEVREA-DLLLHVVDASD----PDREEQIEAVEKVLEELGAEDIP 303
Query: 124 LLVLGNKIDK 133
L++ NKID
Sbjct: 304 QLLVYNKIDL 313
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like) [Unknown function, General]. Length = 351 |
| >gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 5e-04
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
++ ++G GKT+L++V A + E+ +PTV N ++ + + LWD G P +
Sbjct: 7 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66
|
Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182 |
| >gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8 | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 6e-04
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
L+G GKT+L+ V A + E+ +PTV N +V K + + LWD G P +
Sbjct: 6 LVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPYY 62
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 8e-04
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 25/123 (20%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG-------FNMRKVTKGNVTIKLWDLGG--- 73
L+G N GK++L+N + + + V + V I L D G
Sbjct: 4 LVGRPNVGKSTLINAL-----TGAKVAIVSDYPGTTRDPILGVLGLGRQIILVDTPGLIE 58
Query: 74 ---QPRFRSMWERYCRAVS---AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 127
+ + + R+ A+ I+ VVDA++ E+ + L K L P++++
Sbjct: 59 GASEGKGVEGFNRFLEAIREADLILLVVDASEGLTEDD--EEILEELEK--LPKKPIILV 114
Query: 128 GNK 130
NK
Sbjct: 115 LNK 117
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|206742 cd09915, Rag, Rag GTPase subfamily of Ras-related GTPases | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.001
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 29/94 (30%)
Query: 24 LIGLQNAGKTSLVNVI-------------ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
L G + +GK+S+ V+ +T + +G T+ LWD
Sbjct: 4 LXGRRRSGKSSIRKVVFHNYSPFDTLRLESTIDVEHSHLSFLGN---------XTLNLWD 54
Query: 71 LGGQ-----PRFRSMWERYCRAVSAIVYVVDAAD 99
GQ P E + V A++YV+D D
Sbjct: 55 CPGQDVFFEPTKDK--EHIFQXVGALIYVIDVQD 86
|
Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 175 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.001
Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 44/178 (24%)
Query: 24 LIGLQNAGKTSLVNVIA---------TGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG- 73
++G N GK++L N + T G + D I + L D GG
Sbjct: 8 IVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDA----EW--LGREFILIDTGGL 61
Query: 74 -----QPRFRSMWERYCRAVS---AIVYVVDA----ADYDNLPVSRSELHDLLSKPSLNG 121
+ E+ A+ I++VVD D E+ +L + +
Sbjct: 62 DDGDEDELQELIREQALIAIEEADVILFVVDGREGITPAD------EEIAKILRR---SK 112
Query: 122 IPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
P++++ NKID +A +G IS ++ I ++D +++
Sbjct: 113 KPVILVVNKIDNLKAEELAYEFYSLGFGEP-------VPISAEHGRGIGDLLDAVLEL 163
|
Length = 444 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.001
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 16/137 (11%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
LIG GK+++++ + + T+G F R + T+K +WD GQ R+R+
Sbjct: 17 LIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA 76
Query: 80 MWERYCR-AVSA-IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID--KP 134
+ Y R AV A +VY + +DN+ EL D + I +++ GNK D
Sbjct: 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKSDLNHL 132
Query: 135 EALSKED---LMEQMGL 148
++++ED L E+ GL
Sbjct: 133 RSVAEEDGQALAEKEGL 149
|
Length = 216 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.002
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE----ALSKEDLMEQ 145
AI+ VVDA + + ++ H LL+K G+P++V NKID+ + E++ +
Sbjct: 93 AIL-VVDAVEG---VMPQTREHLLLAK--TLGVPIIVFINKIDRVDDAELEEVVEEISRE 146
Query: 146 MGLKSITDREVC-CYMISCKNSTNIDTVIDWLVKH 179
+ K E S ID +++ L +
Sbjct: 147 LLEKYGFGGETVPVVPGSALTGEGIDELLEALDLY 181
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 91 IVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKID-----KPEALSKEDLME 144
+V+VVD D P S L +L+ P++++GNKID K+ + +
Sbjct: 37 VVHVVDIFD---FPGSLIPGLAELI-----GAKPVILVGNKIDLLPKDVKPNRLKQWVKK 88
Query: 145 QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
++ + + ++V +S K ++ +I+ + K +K +
Sbjct: 89 RLKIGGLKIKDVIL--VSAKKGWGVEELIEEIKKLAKYR 125
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191 |
| >gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3) | Back alignment and domain information |
|---|
Score = 36.4 bits (84), Expect = 0.004
Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 33/159 (20%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVT-------IKLWDLGGQ 74
++G GK+SLV+++ + TVG ++R T G T ++LWD+GG
Sbjct: 5 VLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDVGGS 64
Query: 75 PRFRSMWERYCRAV-----SAIVYVVD------------------AADYDNLPVSRSELH 111
+ RAV + I++V D D + +
Sbjct: 65 VGSAESV-KSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVTNGD 123
Query: 112 DLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS 150
+ + N +PLLV+G K+D+ + ++ + S
Sbjct: 124 YDSEQFAGNPVPLLVIGTKLDQIPEAKRNWVLTRTAFLS 162
|
RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.004
Identities = 40/195 (20%), Positives = 71/195 (36%), Gaps = 66/195 (33%)
Query: 22 LSLIGLQNAGKTSLVNVIA-------------T----------GGYSEDMIPTVGFNMRK 58
+++IG N GK++LVN + T G +I T G +R+
Sbjct: 175 IAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYTLIDTAG--IRR 232
Query: 59 VTKGNVTIKLWDLGGQPRFRSMWERYC--RAVSAI------VYVVDAADYDNLPVSRSEL 110
KG VT + E+Y R + AI + V+DA + ++ +L
Sbjct: 233 --KGKVTEGV-------------EKYSVLRTLKAIERADVVLLVLDATE----GITEQDL 273
Query: 111 H--DLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR-----EVCCYMISC 163
L + G L+++ NK D + E E+ K + + IS
Sbjct: 274 RIAGLALE---AGKALVIVVNKWD---LVKDEKTREEF-KKELRRKLPFLDFAPIVFISA 326
Query: 164 KNSTNIDTVIDWLVK 178
+D ++D + +
Sbjct: 327 LTGQGVDKLLDAIDE 341
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.004
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 121 GIPLLVLGNKIDKPEA---LSKEDLMEQMGLKS-ITDREVCCYMISCKNSTNIDTVID 174
G+P++V NKIDKPEA K++L E GL +V +S K ID +++
Sbjct: 107 GVPIVVAINKIDKPEANPDKVKQELQEY-GLVPEEWGGDVIFVPVSAKTGEGIDELLE 163
|
Length = 509 |
| >gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 36.1 bits (83), Expect = 0.004
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTV--GFNMRKVTKG-NVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + ++ IPTV ++ + G V++ LWD GQ
Sbjct: 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQ 61
Query: 75 P---RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
R R++ + + Y+N+ R + H + N +P+L++G K
Sbjct: 62 EEYDRLRTLSYPQTNVFIICFSIASPSSYENV---RHKWHPEVCHHCPN-VPILLVGTKK 117
Query: 132 D---KPEALSKEDLMEQMGLKSITDRE 155
D + L K L EQ G IT ++
Sbjct: 118 DLRNDADTLKK--LKEQ-GQAPITPQQ 141
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191 |
| >gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | Back alignment and domain information |
|---|
Score = 36.2 bits (83), Expect = 0.004
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L L+G GKT+++ V+A Y E +PTV N + + V + LWD G P +
Sbjct: 15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 184 | |||
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 100.0 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 100.0 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 100.0 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 100.0 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 100.0 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 100.0 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 100.0 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 100.0 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 100.0 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 100.0 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 100.0 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 100.0 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 100.0 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 100.0 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 100.0 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 100.0 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 100.0 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 100.0 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 100.0 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 100.0 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 100.0 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 100.0 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 100.0 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 100.0 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 100.0 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.98 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.98 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.98 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.98 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.98 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.98 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.98 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.98 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.98 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.98 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.98 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.98 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.98 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.97 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.97 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.97 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.97 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.97 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.97 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.97 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.97 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.97 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.97 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.97 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.97 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.97 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.97 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.97 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.97 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.97 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.97 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.97 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.97 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.97 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.97 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.97 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.97 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.97 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.97 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.97 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.97 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.97 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.97 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.97 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.97 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.97 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.97 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.97 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.97 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.97 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.97 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.97 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.97 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.97 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.97 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.97 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.97 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.97 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.97 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.97 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.96 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.96 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.96 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.96 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.96 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.96 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.96 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.96 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.96 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.96 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.95 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.95 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.95 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.95 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.95 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.95 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.94 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.94 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.94 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.94 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.94 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.94 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.94 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.93 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.93 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.93 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.93 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.93 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.93 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.93 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.92 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.92 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.92 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.92 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.92 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.92 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.92 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.92 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.92 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.91 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.91 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.91 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.91 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.91 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.91 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.91 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.91 | |
| PTZ00099 | 176 | rab6; Provisional | 99.91 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.91 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.91 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.91 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.91 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.91 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.91 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.9 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.9 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.9 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.9 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.9 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.89 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.89 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.89 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.89 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.89 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.89 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.89 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.89 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.89 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.89 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.89 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.88 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.88 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.88 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.88 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.88 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.88 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.87 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.87 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.87 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.87 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.87 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.87 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.87 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.87 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.86 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.86 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.86 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.86 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.86 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.86 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.85 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.85 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.85 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.85 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.85 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.84 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.84 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.84 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.84 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.84 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.84 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.84 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.83 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.83 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.83 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.82 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.82 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.82 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.82 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.82 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.8 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.8 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.8 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.8 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.8 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.8 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.79 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.79 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.79 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.79 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.79 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.78 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.78 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.78 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.78 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.78 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.77 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.77 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.77 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.77 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.77 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.76 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.76 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.76 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.76 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.75 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.75 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.74 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.74 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.73 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.73 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.72 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.72 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.71 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.7 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.7 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.7 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.7 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.69 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.69 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.69 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.68 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.67 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.67 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.67 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.67 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.66 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.66 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.65 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.63 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.62 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.62 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.62 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.6 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.6 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.59 | |
| PRK13768 | 253 | GTPase; Provisional | 99.59 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.58 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.58 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.56 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.56 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.55 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.55 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.55 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.52 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.52 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.52 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.51 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.51 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.5 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.49 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.49 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.48 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.48 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.47 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.47 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.46 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.45 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.44 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.44 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.42 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.4 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.4 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.4 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.39 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.39 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.32 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.32 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.3 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 99.27 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.26 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.24 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.23 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.2 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.19 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.18 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 99.16 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.14 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.12 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 99.12 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.11 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 99.11 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.09 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.06 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.05 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 99.03 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.02 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.02 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.01 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.0 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 98.99 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.97 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.96 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.95 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.9 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.9 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 98.89 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.89 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 98.88 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 98.85 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.85 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.85 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.84 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.83 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.83 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.8 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.78 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.78 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.76 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.76 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.76 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.76 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 98.75 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.75 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.74 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.74 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.73 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.72 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.71 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.71 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 98.7 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.68 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.68 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.63 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.63 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.61 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.59 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.58 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.57 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.56 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.53 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.53 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.53 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 98.52 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.52 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.5 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.49 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.48 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.48 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.46 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.45 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.44 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.42 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.41 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.38 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 98.37 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.36 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.32 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.3 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.29 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.29 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.25 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.23 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.21 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.2 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.19 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 98.18 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.17 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 98.16 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 98.14 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 98.12 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.09 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.06 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 98.04 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 98.03 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.02 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 98.01 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 97.98 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 97.97 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.96 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.93 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.93 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.91 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.9 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.9 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.9 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 97.9 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.87 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 97.87 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.86 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.84 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.83 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.82 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 97.81 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.81 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.81 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.8 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.79 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 97.79 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 97.79 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 97.79 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.78 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.76 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.75 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 97.74 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 97.74 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.74 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.73 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.73 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.71 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.7 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.69 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 97.68 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 97.66 | |
| PRK06696 | 223 | uridine kinase; Validated | 97.65 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.65 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 97.64 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 97.64 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 97.63 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.63 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.63 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 97.62 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 97.62 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.62 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 97.62 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 97.61 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.61 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 97.61 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 97.6 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.6 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 97.6 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 97.6 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.59 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.59 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 97.59 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.59 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.59 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 97.58 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 97.58 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 97.58 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 97.57 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 97.57 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.57 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 97.56 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.55 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 97.55 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 97.55 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.55 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 97.55 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 97.55 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 97.55 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 97.54 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 97.54 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 97.54 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.54 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 97.54 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 97.54 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.54 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 97.54 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 97.53 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 97.53 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 97.53 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 97.53 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 97.53 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 97.53 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 97.52 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 97.52 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 97.52 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 97.52 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 97.52 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 97.51 |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=202.40 Aligned_cols=171 Identities=32% Similarity=0.643 Sum_probs=146.1
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
++++.++.++|+++|++|||||||++++..+.+. .+.||.+.....++...+.+.+||+||++.+...+..+++.+|++
T Consensus 10 ~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~i 88 (181)
T PLN00223 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
T ss_pred HHhcCCCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 4445567799999999999999999999987775 467888877777777889999999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+|+++++++.....++..+.......++|+++|+||+|+......+++.+.+++.....+.+.+++|||++|.||++
T Consensus 89 I~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHH
Confidence 99999999999998888877776554446799999999999988777788888887765544556677999999999999
Q ss_pred HHHHHHHHhhhc
Q 029978 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
++++|.+.+.++
T Consensus 169 ~~~~l~~~~~~~ 180 (181)
T PLN00223 169 GLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHhhc
Confidence 999999887754
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=202.84 Aligned_cols=178 Identities=33% Similarity=0.622 Sum_probs=147.5
Q ss_pred Cc-hHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchH
Q 029978 1 MG-LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
|| ++..+. .+++.++.++|+++|++|||||||++++..+.+.. +.||.+.....++..++.+.+|||||++.+..
T Consensus 1 ~~~~~~~~~---~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 76 (182)
T PTZ00133 1 MGLWLSSAF---KSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRP 76 (182)
T ss_pred CchHHHHHH---HHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEECCEEEEEEECCCCHhHHH
Confidence 66 344443 44566778999999999999999999998877764 56788877777777889999999999999999
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEE
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCY 159 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+..+++.+|++|+|+|+++++++.....++..+.......+.|+++|+||.|+.+....+++.+.++........+.++
T Consensus 77 ~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~ 156 (182)
T PTZ00133 77 LWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQ 156 (182)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEE
Confidence 99999999999999999999998988888777776543335789999999999977666677777777765555566788
Q ss_pred EeeeCCCCCHHHHHHHHHHHhhh
Q 029978 160 MISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
++||++|.|+++++++|.+.+.+
T Consensus 157 ~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 157 GCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987653
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=204.54 Aligned_cols=157 Identities=25% Similarity=0.466 Sum_probs=136.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+.-+||.++|++|||||+|+.+|..+.+...+..|++.++.. ++...+++++|||+||++|+....++++++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 456999999999999999999999999999999999977754 5567799999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-----HhHHHHHcCCCCcCCCcee-EEEeeeCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-----KEDLMEQMGLKSITDREVC-CYMISCKNS 166 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 166 (184)
+|||+++.+||..+..|+.++.++.. .++|.++||||+|+.+... +++....++ .+ ++++||+++
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~--------~~~f~ETSAK~~ 157 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELG--------IPIFLETSAKDS 157 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHHHHHhcC--------CcceeecccCCc
Confidence 99999999999999999999876644 7799999999999976532 222222222 23 999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.||++.|..+...+++
T Consensus 158 ~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 158 TNVEDAFLTLAKELKQ 173 (205)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999988764
|
|
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=200.28 Aligned_cols=163 Identities=22% Similarity=0.378 Sum_probs=144.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.+|++++|+.+|||||||.++..+.|...+.+|++.++.. +....+++++|||+|||+|+.+.++|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 34999999999999999999999999999999999977653 45667999999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|||+++..+|....+|+.+........++-+++||||.||.+. +++....+....+..++.|+++||+.|.||.++|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 9999999999999999999998877667899999999999765 5555555555555666789999999999999999
Q ss_pred HHHHHHhhhc
Q 029978 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~~~~~ 183 (184)
..|..++..+
T Consensus 178 rrIaa~l~~~ 187 (221)
T KOG0094|consen 178 RRIAAALPGM 187 (221)
T ss_pred HHHHHhccCc
Confidence 9999887653
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=199.62 Aligned_cols=160 Identities=23% Similarity=0.406 Sum_probs=134.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--E--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+|++++|+.++|||||+.|+..+.|.+...+|++..+.. + +...+++.||||+|+++|..+.++|+|+++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 457899999999999999999999999999999999965544 3 334589999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|||+++.+||..++.|..++.+... +++-+.+||||+|+.+.. ..++...- .......|+++||+++.||+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~y-----Ae~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAY-----AESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHH-----HHhcCCEEEEEecccccCHH
Confidence 99999999999999999999987766 888999999999998732 22222111 11234469999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|..|.+.+..
T Consensus 157 ~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 157 EIFQAIAEKLPC 168 (200)
T ss_pred HHHHHHHHhccC
Confidence 999999988764
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=196.52 Aligned_cols=165 Identities=33% Similarity=0.637 Sum_probs=141.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..+.++|+++|++|||||||++++..+.+. .+.||++..........+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 10 ~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 10 GNKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 356799999999999999999999877774 4667888777666677899999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|+++++++.....++..+.......++|+++|+||+|+.+....+++.+.++......+.+.++++||++|.|+++++++
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 168 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTW 168 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHH
Confidence 99999999998888888876544467999999999999876666778777776655556677889999999999999999
Q ss_pred HHHHhh
Q 029978 176 LVKHSK 181 (184)
Q Consensus 176 i~~~~~ 181 (184)
|.+.+.
T Consensus 169 l~~~~~ 174 (175)
T smart00177 169 LSNNLK 174 (175)
T ss_pred HHHHhc
Confidence 987754
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=196.06 Aligned_cols=162 Identities=33% Similarity=0.637 Sum_probs=137.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..+.++|+++|++|||||||++++..+.+.. +.||.+.....+...++.+.+|||||++++...+..+++.+|++++|+
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 3567999999999999999999998777653 567877776666677899999999999999989999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|++++.++.....++.++.......++|+++|+||+|+......+++.+.+++........+++++||++|.|++++|++
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~ 164 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 164 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHH
Confidence 99999999998888888876544467899999999999766666777777766555555567999999999999999999
Q ss_pred HHH
Q 029978 176 LVK 178 (184)
Q Consensus 176 i~~ 178 (184)
|.+
T Consensus 165 l~~ 167 (168)
T cd04149 165 LSS 167 (168)
T ss_pred Hhc
Confidence 864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=185.45 Aligned_cols=183 Identities=75% Similarity=1.187 Sum_probs=175.6
Q ss_pred CchHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHh
Q 029978 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
++.+++.+.|+++.+-..++.+.++|-.++|||||++....+.+.....||+++....++.+++.+.+||.+|++.++..
T Consensus 2 ~~~~~k~L~wi~~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsm 81 (186)
T KOG0075|consen 2 CAKLRKKLVWICNSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 81 (186)
T ss_pred hhHHHHHHHHHHHHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEE
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|..|.++++++++|+|+.+++.....+..+..++......++|+.+.|||.|+.+.....++.+++++.....+-+.+|.
T Consensus 82 WerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~s 161 (186)
T KOG0075|consen 82 WERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFS 161 (186)
T ss_pred HHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEE
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999899999
Q ss_pred eeeCCCCCHHHHHHHHHHHhhhc
Q 029978 161 ISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
+||++..|++.+.+++.++.+..
T Consensus 162 iScke~~Nid~~~~Wli~hsk~~ 184 (186)
T KOG0075|consen 162 ISCKEKVNIDITLDWLIEHSKSL 184 (186)
T ss_pred EEEcCCccHHHHHHHHHHHhhhh
Confidence 99999999999999999987643
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=191.79 Aligned_cols=158 Identities=31% Similarity=0.648 Sum_probs=133.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+||+++|.+|||||||++++..+.+. .+.||.+.....+....+.+.+||+||++++...+..+++.+|++++|+|+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~ 79 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC
Confidence 48999999999999999999888776 46788887766666778999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 100 YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
++++.....++..+.........|+++|+||+|+.+....+++.+.++........+.++++||++|.|++++|++|.+
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 80 RERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 9999998888887765544456899999999999765555666666665544455667889999999999999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=190.10 Aligned_cols=162 Identities=25% Similarity=0.370 Sum_probs=143.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||.++|++|+|||||+.+|..+.|.+....|++.++. .++...+++.+|||+||++|+.+..+|++++.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 3599999999999999999999999999998888986664 467778999999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|||++.+++|..+.-|..++-.+...+++-.++|+||+|...+ +.+.++.++...+.+.+-+++|||++..||+..|
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~---R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE---RVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc---ccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 9999999999999888888877766688999999999998654 5666666777777788889999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.++..+.+
T Consensus 167 eelveKIi~ 175 (209)
T KOG0080|consen 167 EELVEKIIE 175 (209)
T ss_pred HHHHHHHhc
Confidence 999877653
|
|
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=193.25 Aligned_cols=166 Identities=23% Similarity=0.386 Sum_probs=135.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..-+||.++|++|+|||||++++....|...+..|++.++.. ++..-+.+++|||+|+++|.++...+++++|+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 445999999999999999999999999999999999976654 5556689999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCC---CCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSL---NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++||++++++|..+..|..+++.+... ...|.+++|||+|+........-.++....-.....+|+|++|||+..||
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV 166 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence 999999999999999999988876442 46799999999999764221111111111111233668999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
++.|+.+.+.+..
T Consensus 167 ~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 167 DEAFEEIARRALA 179 (210)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=196.14 Aligned_cols=159 Identities=17% Similarity=0.277 Sum_probs=128.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.++|+++|.+|||||||++++.++.++..+.+|.+..+. .++...+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 479999999999999999999999998888888875443 23444578999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|++++++|..+..|+..+.+.....++|+++|+||+|+.+... .++..+. .....+++++|||++|.||+++|
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~-----a~~~~~~~~e~Sa~~~~~v~~~f 156 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNL-----AREFNCPFFETSAALRHYIDDAF 156 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHH-----HHHhCCEEEEEecCCCCCHHHHH
Confidence 9999999999987766665443346799999999999865422 2222111 11234579999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+++.+.+.+
T Consensus 157 ~~l~~~~~~ 165 (172)
T cd04141 157 HGLVREIRR 165 (172)
T ss_pred HHHHHHHHH
Confidence 999987654
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=199.82 Aligned_cols=157 Identities=22% Similarity=0.353 Sum_probs=125.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+.|+++|+.|||||||++++..+.|...+.+|++..+. .+. ...+.+++|||+|++++..++..+++.+|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999999888888875543 233 33488999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|++++++|..+..|+..+... ...+.|+++|+||+|+..... .++.. .+... ...+.+++|||++|.||+++|
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~-~~a~~---~~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGE-KFAQQ---ITGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHH-HHHHh---cCCCEEEEecCCCCCCHHHHH
Confidence 999999999998887765433 346799999999999965322 12211 11100 113469999999999999999
Q ss_pred HHHHHHhh
Q 029978 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
+++.+.+.
T Consensus 156 ~~l~~~~~ 163 (202)
T cd04120 156 LKLVDDIL 163 (202)
T ss_pred HHHHHHHH
Confidence 99998764
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=196.82 Aligned_cols=158 Identities=18% Similarity=0.311 Sum_probs=128.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..+||+++|+.|||||||+.++..+.+...+.+|.+..+. .++...+.+++|||+|++++..++..+++.+|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35689999999999999999999998888777777765442 23344588999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|||++++++|..+..|+.++.... ++.|+++|+||+|+.... ..++..+.. ....+++++|||++|.||+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a-----~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYA-----ERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence 9999999999999999888886543 589999999999996532 222222222 1223479999999999999
Q ss_pred HHHHHHHHHhh
Q 029978 171 TVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
++|+++.+.+.
T Consensus 157 ~~F~~l~~~i~ 167 (189)
T cd04121 157 ESFTELARIVL 167 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999998664
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=187.81 Aligned_cols=161 Identities=30% Similarity=0.580 Sum_probs=136.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|++|+|||||++++..+.+.. ..+|.+............+.+||+||++.+...+..+++.+|++++|+|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID 91 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence 457899999999999999999999887764 5678777776777778999999999999999899999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++.+++.....++..+.+.....++|+++++||+|+......+++.+.++........+++++|||++|.|+++++++|
T Consensus 92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 99998888888878777665444679999999999997765667777777755544556789999999999999999998
Q ss_pred HH
Q 029978 177 VK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 172 ~~ 173 (174)
T cd04153 172 AS 173 (174)
T ss_pred hc
Confidence 64
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=187.62 Aligned_cols=161 Identities=30% Similarity=0.569 Sum_probs=134.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
||+++|++|||||||++++.++.+.. +.+|.+.....++..++.+.+|||||++.+...+..+++.+|++++|+|++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~ 79 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHR 79 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcH
Confidence 58999999999999999999887654 77888877777777889999999999999988999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc-CCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 101 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
+++.....++..+.......+.|+++|+||+|+.+....+++.+.+..... ....+.+++|||++|.||+++|+++.+.
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 80 DRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred HHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 999999888888876544466899999999999766565666655543322 1234578899999999999999999987
Q ss_pred hhh
Q 029978 180 SKS 182 (184)
Q Consensus 180 ~~~ 182 (184)
+.+
T Consensus 160 ~~~ 162 (169)
T cd04158 160 LVA 162 (169)
T ss_pred Hhh
Confidence 654
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=188.05 Aligned_cols=175 Identities=32% Similarity=0.557 Sum_probs=143.2
Q ss_pred chHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhH
Q 029978 2 GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 81 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 81 (184)
.||.++..++. ..++.++|+++|++|+|||||++++.++.+. .+.+|.+.....+...++.+.+||+||++.+...+
T Consensus 2 ~~~~~~~~~~~--~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 78 (184)
T smart00178 2 DWFYDILASLG--LWNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLW 78 (184)
T ss_pred hHHHHHHHHhc--cccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEECCEEEEEEECCCCHHHHHHH
Confidence 36777765321 1267799999999999999999999977654 34566666666666778999999999999999999
Q ss_pred HHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcC-------CC
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT-------DR 154 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~ 154 (184)
..++..+|++++|+|+++++++.....++..+.+.....++|+++|+||+|+......+++.+.+++.... ..
T Consensus 79 ~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~ 158 (184)
T smart00178 79 KDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVR 158 (184)
T ss_pred HHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCc
Confidence 99999999999999999988888888788777765445689999999999998777778888888765422 24
Q ss_pred ceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 155 EVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
...+++|||+++.|+++++++|.+.
T Consensus 159 ~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 159 PLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eeEEEEeecccCCChHHHHHHHHhh
Confidence 5679999999999999999999764
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=192.27 Aligned_cols=163 Identities=21% Similarity=0.387 Sum_probs=136.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
....++|+++|++|||||+++.+|..+.|...+..|++.++.. .+...+.+++|||+||++++.+..+|+++|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 3567999999999999999999999999999999999966643 456678999999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|||+++..+|.++..|+..+-.+ ...++|.++||||+|+... +++..+.+........+.++|+||++|.||++
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEK---RQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeecccccccc---ccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 9999999999999999976666544 4469999999999999763 22322223333333455799999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
.|-.+.+.+.+
T Consensus 165 aF~~La~~i~~ 175 (207)
T KOG0078|consen 165 AFLSLARDILQ 175 (207)
T ss_pred HHHHHHHHHHh
Confidence 99999888763
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=187.48 Aligned_cols=161 Identities=33% Similarity=0.615 Sum_probs=133.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
...++|+++|++|||||||++++.+..+ ..+.+|.++....+....+.+.+|||||++.+...+..+++.+|++++|+|
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVD 90 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 4568999999999999999999987644 456778776666666678899999999999988888999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++..++.....++..+.......++|+++|+||+|+.+....+++.+.++........++++++||++|.|++++++++
T Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 91 SSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 99998888888888777665445689999999999997765666666666554334456789999999999999999998
Q ss_pred HH
Q 029978 177 VK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 171 ~~ 172 (173)
T cd04154 171 VD 172 (173)
T ss_pred hc
Confidence 64
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=194.83 Aligned_cols=163 Identities=18% Similarity=0.269 Sum_probs=126.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+..+||+++|++|+|||||++++..+.+...+.||++..+. .++...+.+.+|||+|++.+...+..+++.+|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 45789999999999999999999999999999999875443 234455889999999999999999999999999999
Q ss_pred EEeCCCCCChHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---------HhHHHHHcCCCCcCCCc-eeEEEee
Q 029978 94 VVDAADYDNLPVS-RSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---------KEDLMEQMGLKSITDRE-VCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~S 162 (184)
|||++++++|..+ ..|...+.... ++.|+++|+||+|+.+... ...+..+.+........ +++++||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999997 56666665432 5799999999999864210 00011111111112223 3799999
Q ss_pred eCCCCC-HHHHHHHHHHHhh
Q 029978 163 CKNSTN-IDTVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~-v~~l~~~i~~~~~ 181 (184)
|++|.| |+++|+.+.+++.
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 161 ALQSENSVRDIFHVATLACV 180 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 999998 9999999998654
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=192.34 Aligned_cols=163 Identities=20% Similarity=0.272 Sum_probs=126.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.+||+++|++|||||||+.++..+.++..+.||++..+. .++...+.+.+|||+|++++..++..+++.+|++++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 3589999999999999999999999999999999875443 2444558899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC---------cCCC-ceeEEEeee
Q 029978 95 VDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS---------ITDR-EVCCYMISC 163 (184)
Q Consensus 95 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~Sa 163 (184)
||++++++|..+.. |...+... ..++|+++|+||.|+.+.....+......... .... .+++++|||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999975 54545433 25799999999999965422111111111110 1112 257999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 029978 164 KNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~~ 182 (184)
++|.||+++|+.+.+.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987653
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=193.01 Aligned_cols=156 Identities=20% Similarity=0.294 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||+.++..+.|...+.+|++..+. .++...+.+.+|||+|++++...+..+++.++++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999999999999875443 233455889999999999999999999999999999999
Q ss_pred CCCCCChHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCccCcC------------CHhHHHHHcCCCCcCCCce-eEEEee
Q 029978 97 AADYDNLPVS-RSELHDLLSKPSLNGIPLLVLGNKIDKPEAL------------SKEDLMEQMGLKSITDREV-CCYMIS 162 (184)
Q Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~S 162 (184)
++++++|..+ ..|+..+.... .+.|+++||||+|+.+.. ..++..+ + ...... ++++||
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~----a~~~~~~~~~E~S 154 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE-L----RKQIGAAAYIECS 154 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHH-H----HHHcCCCEEEECC
Confidence 9999999998 56777765432 479999999999996531 1111111 1 111223 599999
Q ss_pred eCCCCCHHHHHHHHHHHhhh
Q 029978 163 CKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~ 182 (184)
|++|.||+++|+.+.+.+.+
T Consensus 155 Ak~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 155 SKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred CCcccCHHHHHHHHHHHHhc
Confidence 99999999999999987654
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=184.14 Aligned_cols=158 Identities=32% Similarity=0.673 Sum_probs=130.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC-CCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+|+++|++|||||||++++.+.. +...+.||.+.....+....+.+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 48999999999999999999875 35667888887766677788999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHH
Q 029978 100 YDNLPVSRSELHDLLSKP--SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
..++.....++..+.+.. ...++|+++|+||+|+.+....+++.+.++.........+++++||++|.|+++++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 888887777777665532 235799999999999977655566666655543333455799999999999999999986
Q ss_pred H
Q 029978 178 K 178 (184)
Q Consensus 178 ~ 178 (184)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 4
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=187.11 Aligned_cols=161 Identities=19% Similarity=0.284 Sum_probs=140.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee----eEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+|+.++|+.|||||+|+.+++...|.+....|++.++ .+++...+++++|||+|++.++....++++.+.+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 3568999999999999999999999999999999998655 357788899999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|||++++++|..+..|+.++.+.. ..++.+++++||+|+... +++.++.+..+...+...++++||+++.||++.
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 9999999999999999999997764 489999999999999776 455555555555566667999999999999999
Q ss_pred HHHHHHHhh
Q 029978 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
|..+...+.
T Consensus 160 F~nta~~Iy 168 (216)
T KOG0098|consen 160 FINTAKEIY 168 (216)
T ss_pred HHHHHHHHH
Confidence 987766543
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=188.99 Aligned_cols=157 Identities=21% Similarity=0.336 Sum_probs=125.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|||||||++++..+.+...+.+|....+. .++...+.+.+|||||++++...+..+++.+|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 379999999999999999999999888888787763322 23334477899999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++.....|+..+.......++|+++|+||+|+.+... .++. ..+.. ....+++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEG-QALAR----QWGCPFYETSAKSKINVDEVF 155 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHH-HHHHH----HcCCeEEEecCCCCCCHHHHH
Confidence 9999999999988888877655556899999999999865321 1221 11111 112579999999999999999
Q ss_pred HHHHHHh
Q 029978 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+++.+.+
T Consensus 156 ~~l~~~~ 162 (163)
T cd04136 156 ADLVRQI 162 (163)
T ss_pred HHHHHhc
Confidence 9998764
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-32 Score=184.26 Aligned_cols=155 Identities=32% Similarity=0.617 Sum_probs=132.6
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC
Q 029978 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 101 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 101 (184)
|+++|++|||||||++++.++.+...+.||.+.....++..++.+.+||++|++.+...+..+++.+|++++|+|++++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 78999999999999999999888888889998877777888899999999999999999999999999999999999988
Q ss_pred ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc-CCCceeEEEeeeCC------CCCHHHHHH
Q 029978 102 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKN------STNIDTVID 174 (184)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~v~~l~~ 174 (184)
++...+.++..+.... .++|+++|+||+|+......+++.+.++.... ....+++++|||++ +.||+++|+
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 8888888888776443 68999999999999877666666655544333 34467889898888 999999999
Q ss_pred HHHH
Q 029978 175 WLVK 178 (184)
Q Consensus 175 ~i~~ 178 (184)
.++.
T Consensus 160 ~~~~ 163 (164)
T cd04162 160 QLIN 163 (164)
T ss_pred HHhc
Confidence 8864
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=192.78 Aligned_cols=161 Identities=19% Similarity=0.285 Sum_probs=130.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...+||+++|++|+|||||++++.++.+...+.+|.+..+. .++...+.+++|||||++++..++..+++.++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 45799999999999999999999999888888888875553 244555789999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||+++.++|..+..|+..+.......+.|+++|+||+|+.+.. ...+..+... ....+++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK-----SFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HhCCEEEEeeCCCCCCHHH
Confidence 99999999999998888877765555689999999999986532 2222222111 1124699999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+++.+.+.+
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999877653
|
|
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=179.55 Aligned_cols=159 Identities=23% Similarity=0.380 Sum_probs=139.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.-+||+++|..|+|||+|++++..+-|++....|++.++.. ++..++++++|||+|+++|+....++++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 45899999999999999999999999999999999976643 45677999999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
++|++...+|.-+.+|+.++.++.. .++--|+|+||+|+.+. +++.++++..........++++||+...||+.||
T Consensus 86 vydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 9999999999999999999876644 56777999999999776 6666777766666667779999999999999999
Q ss_pred HHHHHHh
Q 029978 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
..+...+
T Consensus 162 ~~~a~rl 168 (213)
T KOG0095|consen 162 LDLACRL 168 (213)
T ss_pred HHHHHHH
Confidence 8887554
|
|
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=188.57 Aligned_cols=157 Identities=20% Similarity=0.306 Sum_probs=127.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+...+.+|.+.... ..+...+.+.+|||||++.+...+..+++.++++++||
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 79999999999999999999999998888888775543 23344578999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|++++++|..+..|+..+... ...+.|+++|+||+|+.... ..++..+... ...++++++||++|.|++++|
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFAD-----ENGLLFLECSAKTGENVEDAF 156 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 999999999998888776543 23678999999999996542 2233322221 123479999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.+.+.+.+
T Consensus 157 ~~l~~~~~~ 165 (166)
T cd04122 157 LETAKKIYQ 165 (166)
T ss_pred HHHHHHHhh
Confidence 999877654
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=182.07 Aligned_cols=157 Identities=39% Similarity=0.725 Sum_probs=128.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
||+++|++++|||||++++..+.+. ...+|.+.....++..+..+.+|||||++.+...+..+++.++++++|+|++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 79 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDR 79 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 5899999999999999999877665 346777766666777789999999999999999999999999999999999988
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 101 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
.++.....++..+.+.....++|+++|+||+|+.+.....++.+.++.........+++++||+++.|++++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 80 DRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 777766666666655444467999999999999765555666666654444444568999999999999999999875
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=188.45 Aligned_cols=158 Identities=20% Similarity=0.317 Sum_probs=126.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
++||+++|.+|||||||++++..+.+...+.+|.+.... ......+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 468999999999999999999988888888888774432 23334578899999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++..++..+..|+..+.......+.|+++|+||+|+.+... .++. +.+.. ...++++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNLAR----QWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHHHH----HhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999988888887655557899999999999965422 1221 11111 112479999999999999999
Q ss_pred HHHHHHhh
Q 029978 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
+++.+.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99987664
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=189.54 Aligned_cols=160 Identities=21% Similarity=0.366 Sum_probs=128.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--Ee------------eCCEEEEEEeCCCcccchHhHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VT------------KGNVTIKLWDLGGQPRFRSMWER 83 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~------------~~~~~~~~~D~~g~~~~~~~~~~ 83 (184)
..+||+++|++|||||||++++.++.+...+.+|++.+... +. ...+.+.+|||||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999999998888888755432 21 23478999999999999999999
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEe
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++.+|++++|||+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++..+... ...++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD-----KYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH-----HcCCeEEEE
Confidence 999999999999999999999999988887665444678999999999996532 2222211111 112469999
Q ss_pred eeCCCCCHHHHHHHHHHHhhh
Q 029978 162 SCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
||++|.|++++++.+.+.+.+
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999986643
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=188.90 Aligned_cols=159 Identities=28% Similarity=0.386 Sum_probs=127.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--Ee-eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VT-KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+||+++|++|||||||++++.++.+...+.+|.+.++. . ++ ...+.+.+|||||++.+...+..+++.++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999999998888899875543 2 23 4468899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcC---CCCCCCcEEEEeeCCCccC--cCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 95 VDAADYDNLPVSRSELHDLLSK---PSLNGIPLLVLGNKIDKPE--ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~---~~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
||++++++|..+..|+..+... ....++|+++|+||+|+.+ ....++..+..... ...+++++||++|.||
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCH
Confidence 9999999999998887766432 2236789999999999963 22333333222211 1246999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++|+++.+.+.+
T Consensus 157 ~e~f~~l~~~l~~ 169 (201)
T cd04107 157 EEAMRFLVKNILA 169 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=193.21 Aligned_cols=160 Identities=24% Similarity=0.432 Sum_probs=126.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+||+++|.+|+|||||++++..+.+.. ..+|++..+.......+.+.+|||+|++.+...+..+++.+|++|+|||+++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~ 79 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN 79 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCC
Confidence 589999999999999999999998875 5778877666555667889999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc---------------------CCHhHH---HHHcCC------C
Q 029978 100 YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA---------------------LSKEDL---MEQMGL------K 149 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~---------------------~~~~~~---~~~~~~------~ 149 (184)
+++|..+..|+..+... ...++|+++|+||+|+.+. ...++. .+..+. .
T Consensus 80 ~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~ 158 (220)
T cd04126 80 VQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDED 158 (220)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccccc
Confidence 99999999888887654 3367999999999998651 011221 112110 0
Q ss_pred CcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 150 SITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
.......+|++|||++|.||+++|+.+++.+.
T Consensus 159 ~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 159 LSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 00111357999999999999999999998765
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=190.09 Aligned_cols=161 Identities=19% Similarity=0.254 Sum_probs=123.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|||||||++++.++.++..+.||.+..+. .++...+.+.+|||+|++.+......+++.+|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 368999999999999999999999999999898865443 23445588999999999999988899999999999999
Q ss_pred eCCCCCChHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-H--------hHHHHHcCCCCcCCCc-eeEEEeeeC
Q 029978 96 DAADYDNLPVS-RSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-K--------EDLMEQMGLKSITDRE-VCCYMISCK 164 (184)
Q Consensus 96 d~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~--------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 164 (184)
|++++++|..+ ..|...+.... ++.|+++|+||+|+.+... . ..+..+.+........ .++++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 56766665442 5799999999999854200 0 0010011111111223 369999999
Q ss_pred CCCC-HHHHHHHHHHHhh
Q 029978 165 NSTN-IDTVIDWLVKHSK 181 (184)
Q Consensus 165 ~~~~-v~~l~~~i~~~~~ 181 (184)
+|.| |+++|+.+.+...
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998643
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=184.75 Aligned_cols=159 Identities=18% Similarity=0.231 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||++++..+.++..+.||.+..+. .+ ....+.+.+|||+|++++...+..+++.+|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 68999999999999999999999998889999875443 22 3334889999999999998888889999999999999
Q ss_pred CCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC---------CCCcCC-CceeEEEeeeCC
Q 029978 97 AADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG---------LKSITD-REVCCYMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~Sa~~ 165 (184)
++++++|..+.. |...+... . .++|+++|+||+|+.+.....+...... ...... ..+.+++|||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~-~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH-C-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999875 55555433 2 5799999999999865422111111100 000111 235799999999
Q ss_pred CCCHHHHHHHHHHHh
Q 029978 166 STNIDTVIDWLVKHS 180 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~ 180 (184)
|.|++++|+.+++.+
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998753
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=186.87 Aligned_cols=162 Identities=20% Similarity=0.340 Sum_probs=135.2
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
.+..+||+++|++++|||-|+.++..++|..+...|++....+ ++.+.++.+||||+||++|+.....+++++.++
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA 90 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 90 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence 3567999999999999999999999999999999999976654 567779999999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|||++...+|..+..|+.+++.+.. .++++++||||+|+.... .+..+-+..........++++||+++.||+.
T Consensus 91 llVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lr---aV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~ 166 (222)
T KOG0087|consen 91 LLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLR---AVPTEDGKAFAEKEGLFFLETSALDATNVEK 166 (222)
T ss_pred EEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhcc---ccchhhhHhHHHhcCceEEEecccccccHHH
Confidence 999999999999999999999987654 799999999999997631 1111111111111233599999999999999
Q ss_pred HHHHHHHHhh
Q 029978 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
.|+.++..+.
T Consensus 167 aF~~~l~~I~ 176 (222)
T KOG0087|consen 167 AFERVLTEIY 176 (222)
T ss_pred HHHHHHHHHH
Confidence 9998887664
|
|
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=181.10 Aligned_cols=157 Identities=33% Similarity=0.575 Sum_probs=135.1
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
+|+++|++|||||||++++.+. +...+.+|.+.....+...++.+++||+||++.+...+..+++.+|++++|+|+++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~ 79 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDD 79 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCch
Confidence 4799999999999999999865 777788898877777778889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcC---CCceeEEEeeeCCC------CCHHH
Q 029978 101 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT---DREVCCYMISCKNS------TNIDT 171 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~~v~~ 171 (184)
+++.....++..+.......++|+++|+||+|+.......++.+.+.+.... ...+++++|||++| .|+++
T Consensus 80 ~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 80 DRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred hHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHH
Confidence 9999998888888766555689999999999998877777777776655432 23467888999998 89999
Q ss_pred HHHHHHH
Q 029978 172 VIDWLVK 178 (184)
Q Consensus 172 l~~~i~~ 178 (184)
.|+||.+
T Consensus 160 ~~~wl~~ 166 (167)
T cd04161 160 GLRWLLA 166 (167)
T ss_pred HHHHHhc
Confidence 9999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=183.19 Aligned_cols=172 Identities=35% Similarity=0.734 Sum_probs=151.3
Q ss_pred HHHHHhhcc-CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhcc
Q 029978 8 LNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR 86 (184)
Q Consensus 8 ~~~~~~~~~-~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (184)
++.++++.. ++..+|+++|+.||||||+++++..+... ...||.++....+...++.+.+||.+|+..++..|..++.
T Consensus 2 ~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 2 SSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred HHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 344556555 78899999999999999999999876443 4788999999888899999999999999999999999999
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcC-CCceeEEEeeeCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT-DREVCCYMISCKN 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 165 (184)
.++++|+|+|+++.+.+.+....+..++......++|+++++||.|+.+....+++.+.+.+.... .+.+.++.|||++
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 999999999999998899999888888887666789999999999999888888888888776655 5678899999999
Q ss_pred CCCHHHHHHHHHHHh
Q 029978 166 STNIDTVIDWLVKHS 180 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~ 180 (184)
|.|+++.+++|.+.+
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999998764
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-31 Score=183.00 Aligned_cols=164 Identities=28% Similarity=0.558 Sum_probs=129.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE-----eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV-----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+.++|+++|++|||||||++++..+.+... .+|.+...... +...+.+.+|||||++.+...+..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998777644 56665444332 225689999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcC-CCceeEEEeeeCCCCCHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT-DREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|+++.+++.....++..+.......++|+++|+||+|+......++....++..... ...++++++||++|.|+++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 999999988888877777777665444679999999999997655555555555433322 2235789999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
++++|.+.+.+
T Consensus 161 l~~~l~~~l~~ 171 (183)
T cd04152 161 GLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999987753
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=185.18 Aligned_cols=155 Identities=21% Similarity=0.372 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
++|+++|++|+|||||++++.++.+...+.+|.+.... .+. ...+.+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888886543 233 33478999999999999988899999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH-hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|++++++|..+..|+..+.... ..+.|+++|+||.|+...... .+....+. ....+++++|||++|.||+++|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLA----KEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999988887776442 357999999999998654321 11122211 11224699999999999999999
Q ss_pred HHHHH
Q 029978 175 WLVKH 179 (184)
Q Consensus 175 ~i~~~ 179 (184)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99875
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=182.79 Aligned_cols=156 Identities=22% Similarity=0.425 Sum_probs=126.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE----eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||+++++.+.+...+.+|.+...... +...+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999998888888888887655442 234578999999999998888888999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|+++.+++..+..|...+..... ++|+++|+||+|+.......+..+.. ....++++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQITFH-----RKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHHHHH-----HHcCCEEEEEeCCCCCChHHHHHH
Confidence 99999999999888887765432 89999999999997443222222211 123457999999999999999999
Q ss_pred HHHHhhh
Q 029978 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~~~~ 182 (184)
+.+.+.+
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9987754
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=182.10 Aligned_cols=157 Identities=16% Similarity=0.266 Sum_probs=125.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|||||||++++.++.+...+.+|.+.... .++...+.+.+|||+|++++...+..+++.++++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 368999999999999999999998888888887764432 23333467889999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++..++..+..|+..+.+.....+.|+++|+||+|+.+... ..+..+... ....+++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK-----SYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH-----HhCCeEEEecCCCCCCHHHHHH
Confidence 9999999998888888777655556899999999999975322 222222211 1234699999999999999999
Q ss_pred HHHHHh
Q 029978 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~~ 180 (184)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998764
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=193.74 Aligned_cols=163 Identities=20% Similarity=0.286 Sum_probs=125.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
..+||+++|++|||||||+.++..+.|...+.||++..+. .++...+.+.+|||+|++.+......+++.+|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 4589999999999999999999999999999999875543 2344568899999999999999999999999999999
Q ss_pred EeCCCCCChHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---------HhHHHHHcCCCCcCCCce-eEEEeee
Q 029978 95 VDAADYDNLPVS-RSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---------KEDLMEQMGLKSITDREV-CCYMISC 163 (184)
Q Consensus 95 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa 163 (184)
||++++++|..+ ..|+..+.... .+.|+++|+||+|+..... ...+..+.+........+ ++++|||
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 999999999985 56766665432 4789999999999864210 000111111111122233 5899999
Q ss_pred CCCC-CHHHHHHHHHHHhhh
Q 029978 164 KNST-NIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~-~v~~l~~~i~~~~~~ 182 (184)
++|. ||+++|+.++..+.+
T Consensus 170 ktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHH
Confidence 9997 899999999887643
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=181.40 Aligned_cols=162 Identities=35% Similarity=0.632 Sum_probs=135.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+..+|+++|++|||||||++++.++.+. .+.+|.+.....+......+.+||+||++.+...+..+++.++++++|+|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 45799999999999999999999977664 56677776666666777899999999999988888899999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc-----------CCCceeEEEeeeCC
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-----------TDREVCCYMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~ 165 (184)
+++.+++.....++..+.+.....+.|+++|+||+|+......+++.+.++.... ....+++++|||++
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK 175 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence 9998888888888888876655567999999999999776666777776654322 12346799999999
Q ss_pred CCCHHHHHHHHHHH
Q 029978 166 STNIDTVIDWLVKH 179 (184)
Q Consensus 166 ~~~v~~l~~~i~~~ 179 (184)
|.|++++|+++.+.
T Consensus 176 ~~gv~e~~~~l~~~ 189 (190)
T cd00879 176 RQGYGEAFRWLSQY 189 (190)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999875
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=184.88 Aligned_cols=157 Identities=21% Similarity=0.291 Sum_probs=125.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|+|||||++++.++.+...+.+|....+.. ++...+.+.+|||||++++...+..+++.+|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5799999999999999999999888877777776643332 3333478999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++..++..+..|+..+.+.....+.|+++|+||+|+..... .++..+... ...++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-----KLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-----HcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999988888877655556899999999999865421 122212111 122468999999999999999
Q ss_pred HHHHHHh
Q 029978 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+.+.+.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998765
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=185.12 Aligned_cols=159 Identities=24% Similarity=0.396 Sum_probs=128.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|++|+|||||++++.++.+...+.+|.+.... .+ +...+.+.+|||||++++...+..+++.+|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 3589999999999999999999999999888888875443 22 3334789999999999998888899999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||++++++|..+..|+..+... ...+.|+++|+||+|+.+.. ..++..+... ....+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALAD-----EYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 99999999999998887777654 33679999999999997532 2222222211 1234699999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+++.+.+..
T Consensus 156 ~~~~i~~~~~~ 166 (167)
T cd01867 156 AFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-32 Score=184.90 Aligned_cols=158 Identities=22% Similarity=0.320 Sum_probs=125.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|||||||++++.++.+...+.+|....+. ..+...+.+.+|||||++++...+..+++.++++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 48999999999999999999998888777777663322 233345789999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++..+.... ...+++++||++|.|++++++
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ-----WGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH-----cCCEEEEeecCCCCCHHHHHH
Confidence 99999999998888777665555689999999999996532 22222221111 124799999999999999999
Q ss_pred HHHHHhhh
Q 029978 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
++.+.+..
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99987653
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.2e-32 Score=186.69 Aligned_cols=160 Identities=25% Similarity=0.423 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+...+.+|.+..+. . .+...+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999889999986553 2 3334588999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+++++++..+..|+..+..... ...| ++|+||+|+..... .+...++ .........+++++|||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~-~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITKQ-ARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHHH-HHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999888887765432 4567 68899999963211 1111111 11111122357999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+.+
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999987654
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-32 Score=190.62 Aligned_cols=157 Identities=18% Similarity=0.264 Sum_probs=124.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+|+++|.+|||||||++++..+.+...+.+|.+..+. .++...+.+.+|||||++++...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 5899999999999999999999888888888764432 2334446799999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 98 ADYDNLPVSRSELHDLLSKPS--LNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
++.++|..+..|+..+..... ..+.|+++|+||+|+..... ..+..+ .. ....++++++||++|.|+++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAA-LA----RRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHH-HH----HHhCCEEEEecCCCCCCHHHHH
Confidence 999999999888877754322 36789999999999964322 122111 11 1123469999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+++.+.+.+
T Consensus 156 ~~l~~~l~~ 164 (190)
T cd04144 156 YTLVRALRQ 164 (190)
T ss_pred HHHHHHHHH
Confidence 999987764
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-30 Score=177.22 Aligned_cols=157 Identities=76% Similarity=1.229 Sum_probs=135.8
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC
Q 029978 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 101 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 101 (184)
|+++|++|+|||||++++.+..+.....+|.+.....++.+...+.+||+||++.+...+..++..+|++++|+|+++.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 79999999999999999999999988899998887777777899999999999999999999999999999999999988
Q ss_pred ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 102 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
++.....++..+.......++|+++|+||+|+.+....+++.+..++.......++++++||++|.|++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88887777777766555568999999999999876555666666665544445678999999999999999999875
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.7e-32 Score=184.99 Aligned_cols=157 Identities=17% Similarity=0.338 Sum_probs=126.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+...+.+|.+..+. ..+...+.+++|||||++.+...+..+++.++++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888898876543 23345688999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCC----CCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSL----NGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~----~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
|+++++++..+..|...+...... .+.|+++|+||+|+.+.. ..++...... ....+++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-----SKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-----HcCCeEEEEECCCCCCH
Confidence 999999999988888877665432 579999999999996321 2222222111 11246999999999999
Q ss_pred HHHHHHHHHHhh
Q 029978 170 DTVIDWLVKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~~~ 181 (184)
+++++.+.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-32 Score=185.15 Aligned_cols=158 Identities=16% Similarity=0.272 Sum_probs=124.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee---eEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+++|+++|.+|+|||||++++.++.+...+.+|..... ..++...+.+.+|||||++++...+..+++.+|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47899999999999999999999999888878765222 223344567899999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh-HHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++.+++..+..|+..+.......++|+++|+||+|+....... +....+.. ....+++++||+++.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE----EWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH----HhCCEEEEecCCCCCCHHHHHH
Confidence 999999999998888877765445789999999999986532211 11111111 1124689999999999999999
Q ss_pred HHHHHh
Q 029978 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~~ 180 (184)
++.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998764
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=184.64 Aligned_cols=158 Identities=22% Similarity=0.367 Sum_probs=126.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
||+++|++|||||||++++.++.+...+.+|.+..+.. +....+.+++|||||++++...+..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999999998765532 23335789999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH---hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+++++++.....|+..+.+.....+.|+++|+||+|+.+.... ++...... .....+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA----AEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH----HHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999888888765544346789999999998654221 11111111 1112468999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.+.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999988754
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=177.13 Aligned_cols=157 Identities=36% Similarity=0.722 Sum_probs=135.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
||+++|.+|||||||++++.++. .....+|.+............+.+||+||++.+...+..+++.+|++++|+|++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~ 79 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDR 79 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999876 44567777777777777789999999999999998999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 101 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
+++.....++..+.......+.|+++|+||+|+......+++.+.++........++++++||++|.|++++++.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 80 ERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 889988888888877655578999999999999877666777777766544455678999999999999999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-31 Score=182.31 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=120.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|||||||+.++..+.+...+.+|....+. .++...+.+.+|||+|++.+...+..+++.+|++++|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 68999999999999999999999998888888764322 233445789999999999999988999999999999999
Q ss_pred CCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCC--------CCcC-CCceeEEEeeeCC
Q 029978 97 AADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGL--------KSIT-DREVCCYMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~--------~~~~-~~~~~~~~~Sa~~ 165 (184)
++++++|..+.. |+..+... . .+.|+++|+||+|+.+... .+...+.... .... ....++++|||++
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~-~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999865 54444432 2 5799999999999964311 1111110000 0001 1124799999999
Q ss_pred CCCHHHHHHHHHHH
Q 029978 166 STNIDTVIDWLVKH 179 (184)
Q Consensus 166 ~~~v~~l~~~i~~~ 179 (184)
|.|++++|+.+.+.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=183.45 Aligned_cols=157 Identities=20% Similarity=0.369 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+...+.+|.+..+. . .+...+.+.+|||+|++++...+..+++.++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 68999999999999999999999988888888764332 2 2234478999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++.+++..+..|...+.... ..+.|+++|+||+|+.+... .++..+... ....+++++||++|.|+++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLAD-----QLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 9999999999988887775432 35789999999999965422 222221111 112369999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.+.+.+-.
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987653
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-31 Score=187.96 Aligned_cols=157 Identities=21% Similarity=0.362 Sum_probs=129.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE----eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|||||||++++..+.+...+.+|++...... +...+.+.+|||+|++++...+..+++.++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 5569999999999999999999999999999999988665442 234589999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|||+++.+++..+..|+..+.... .++|+++|+||+|+..... .+++ +.. ....+++++|||++|.|+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~-----~~~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TFH-----RKKNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HHH-----HhcCCEEEEcCCCCCCCHHH
Confidence 9999999999999988888776542 5799999999999864322 2222 111 12345799999999999999
Q ss_pred HHHHHHHHhh
Q 029978 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
+|+++.+.+.
T Consensus 163 ~f~~l~~~~~ 172 (219)
T PLN03071 163 PFLYLARKLA 172 (219)
T ss_pred HHHHHHHHHH
Confidence 9999998765
|
|
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=190.32 Aligned_cols=161 Identities=18% Similarity=0.282 Sum_probs=124.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|||||||+.++.++.++..+.||++..+. .++...+.+.+|||+|++.+...+..+++.+|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 68999999999999999999999999999999875553 244456889999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH-hH--------HHHHcCCCCcCCCc-eeEEEeeeCCC
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-ED--------LMEQMGLKSITDRE-VCCYMISCKNS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~~ 166 (184)
++++++|..+..+|....... ..+.|+++|+||+|+...... ++ +..+.+........ .+|+||||+++
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~ 160 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS 160 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 999999999966555443332 267999999999999653110 00 00111111111223 47999999998
Q ss_pred CC-HHHHHHHHHHHhh
Q 029978 167 TN-IDTVIDWLVKHSK 181 (184)
Q Consensus 167 ~~-v~~l~~~i~~~~~ 181 (184)
.| |+++|+.+..++.
T Consensus 161 ~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 161 ERSVRDVFHVATVASL 176 (222)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 85 9999999988654
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=183.86 Aligned_cols=155 Identities=21% Similarity=0.305 Sum_probs=121.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
++|+++|++|||||||++++.++.+...+.+|.+..+.. .+...+.+.+|||||++++...+..+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 789999999999999999999999888877877644432 23345789999999999999888888999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKP--SLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+++.+++..+..|+..+.... ...++|+++|+||+|+.+... .++.. ... ....+++++|||++|.|++++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGA-ACA----TEWNCAFMETSAKTNHNVQEL 156 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHH-HHH----HHhCCcEEEeecCCCCCHHHH
Confidence 999999998888776554322 226799999999999965322 12211 111 112346999999999999999
Q ss_pred HHHHHHH
Q 029978 173 IDWLVKH 179 (184)
Q Consensus 173 ~~~i~~~ 179 (184)
|++|.+.
T Consensus 157 f~~l~~~ 163 (165)
T cd04140 157 FQELLNL 163 (165)
T ss_pred HHHHHhc
Confidence 9999864
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=189.14 Aligned_cols=159 Identities=23% Similarity=0.401 Sum_probs=127.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--Ee---eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+||+++|++|||||||++++.++.+.....+|++.+... +. ...+.+++|||+|++.+...+..+++.+|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 4899999999999999999999998888888888755432 22 235789999999999999989999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||++++++|..+..|+..+.........|+++|+||+|+.+... .++. ..+. .....+++++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLA----KDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHH----HHhCCEEEEEeCCCCCCHHH
Confidence 999999999999999888877654445688999999999965322 2222 2211 11225799999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+.|.+.+.+
T Consensus 157 ~f~~l~~~~~~ 167 (211)
T cd04111 157 AFELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHHH
Confidence 99999987653
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=182.11 Aligned_cols=158 Identities=25% Similarity=0.415 Sum_probs=125.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|||||||++++.++.+...+.+|.+.... .+ ....+.+++||+||++++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 379999999999999999999998888777777764432 22 23347899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
||+++++++..+..|+..+.... ..+.|+++|+||+|+..... .++...... ...++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-----ELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCCcCHHHH
Confidence 99999999999998887775543 35789999999999865422 222222111 12347999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
++.+.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999987753
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=184.12 Aligned_cols=161 Identities=22% Similarity=0.284 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.||+++|++|||||||++++.++.++..+.+|.+..+.. .+...+.+.+|||+|++.+...+..+++.++++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 379999999999999999999999988888887655432 33344789999999999998888888999999999999
Q ss_pred CCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC---------CCCc-CCCceeEEEeeeCC
Q 029978 97 AADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG---------LKSI-TDREVCCYMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~Sa~~ 165 (184)
++++++|..+.. |+..+... ..+.|+++|+||+|+.......+...... .... ....+++++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999998864 55555543 25799999999999976532222111110 0011 11235799999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 029978 166 STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~~ 182 (184)
|.||+++|+++.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999987764
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=188.54 Aligned_cols=158 Identities=20% Similarity=0.307 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--Ee---eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+||+++|++|||||||+++|.++.+...+.+|.+.+... +. ...+.+.+|||+|++.+...+..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999999999999998865432 22 2358899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPS--LNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
||++++++|..+..|...+..... ..+.|+++|+||+|+.... ..++..+... ....+++++||++|.|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~-----~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQ-----ANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECCCCCCHH
Confidence 999999999999888777765432 2457899999999996432 1122111111 112468999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|+++.+.+..
T Consensus 156 ~lf~~l~~~l~~ 167 (215)
T cd04109 156 LLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHHh
Confidence 999999987753
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=176.95 Aligned_cols=158 Identities=38% Similarity=0.695 Sum_probs=127.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC------CCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGG------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+|+++|++|+|||||++++.+.. ....+.+|.+.....+...+..+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 58999999999999999997532 234556777777766777789999999999999998889999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC--cCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS--ITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++.+++.....++..+.+.....++|+++|+||+|+......++..+.+.... ......+++++||++|.|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888888888888877665557899999999999977655555555443322 2234568999999999999999
Q ss_pred HHHHHH
Q 029978 173 IDWLVK 178 (184)
Q Consensus 173 ~~~i~~ 178 (184)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999864
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=175.74 Aligned_cols=157 Identities=31% Similarity=0.601 Sum_probs=127.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEee-CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+|+++|++|||||||++++.++.+.. ..+|.++....+.. ..+.+.+||+||++.+...+..++..+|++++|+|+++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~ 79 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSD 79 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc
Confidence 58999999999999999999887754 45777665554443 45789999999999988888999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc-CCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 100 YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
+.++.....++..+.......+.|+++|+||+|+......+++...++.... ....+++++|||++|.|+++++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 80 EARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 8888888888887776544468999999999999765556666666554322 224567999999999999999999864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=177.93 Aligned_cols=157 Identities=22% Similarity=0.368 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+.+...++.+.... .++...+.+++|||+|++.+...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888777776654432 23445578999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|++++.++..+..|+..+... ..++|+++|+||+|+.+.. .++..+ .. ....++++++||++|.|++++++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKFN-FA----EKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999998888887777543 2478999999999985321 111111 11 112347999999999999999999
Q ss_pred HHHHhhhcC
Q 029978 176 LVKHSKSKS 184 (184)
Q Consensus 176 i~~~~~~~~ 184 (184)
+.+.+.+++
T Consensus 153 l~~~~~~~~ 161 (161)
T cd04124 153 AIKLAVSYK 161 (161)
T ss_pred HHHHHHhcC
Confidence 999887654
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=175.83 Aligned_cols=158 Identities=23% Similarity=0.365 Sum_probs=124.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eEEeeCC--EEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|++|+|||||++++.++.+...+.+|.+... ..+...+ +.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999999988888777776433 2333333 689999999999998888999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||+++++++..+..|+..+.... ..++|+++|+||+|+..... .++..+... ......++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcEEEEEECCCCCCHHH
Confidence 999999999998888887776532 36799999999999965422 122222111 11123589999999999999
Q ss_pred HHHHHHHHh
Q 029978 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+++.+.+.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998753
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-32 Score=174.05 Aligned_cols=159 Identities=23% Similarity=0.422 Sum_probs=131.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-++.+|+|++|+|||+|+.+|..+.|...+..|++.+.. .+++..++++||||+|+++|+.+...++++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 367789999999999999999999999999999997664 2456668999999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
||+++.+||.+..+|++++.++.. .+|-++||||.|.++....+. +-+........+.+|++||+.+.|++.+|.
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncd--sv~~vLVGNK~d~~~RrvV~t---~dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCD--SVPKVLVGNKNDDPERRVVDT---EDARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCc--cccceecccCCCCccceeeeh---HHHHHHHHhcCchheehhhhhcccchHHHH
Confidence 999999999999999999977643 899999999999977532111 111111222334599999999999999999
Q ss_pred HHHHHhhh
Q 029978 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
-|.+.+.+
T Consensus 163 cit~qvl~ 170 (198)
T KOG0079|consen 163 CITKQVLQ 170 (198)
T ss_pred HHHHHHHH
Confidence 88877653
|
|
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=171.81 Aligned_cols=156 Identities=22% Similarity=0.435 Sum_probs=131.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--E--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+|+.|+|+..+|||||+.++.+.+|.+.+-.|.+.+... + ..+.+++++|||+|+|+++.+.-.++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 34799999999999999999999999999988888866543 1 2345899999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-----CHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-----SKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+||++|.++|..++.|.-.+... +-.+.|+|+|+||+|+.++. ....+.++++. .+|++||+.|.|
T Consensus 100 myDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf--------efFEtSaK~Nin 170 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF--------EFFETSAKENIN 170 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhCh--------HHhhhccccccc
Confidence 99999999999999887777544 44799999999999997752 22344455554 599999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029978 169 IDTVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~~~~ 182 (184)
|+++|+.++..+..
T Consensus 171 Vk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 171 VKQVFERLVDIICD 184 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=177.78 Aligned_cols=152 Identities=20% Similarity=0.334 Sum_probs=114.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+||+++|++|||||||+.++..+.+...+.|+.+..... ++...+.+.+|||+|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 489999999999999999999888877666654432222 333447899999999975 3456789999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--CC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 98 ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+++++|+.+..|+..+.......++|+++|+||.|+... .. ..+..+.+.. ....+++++|||++|.||+++|+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~---~~~~~~~~e~SAk~~~~i~~~f~ 152 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA---DMKRCSYYETCATYGLNVERVFQ 152 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH---HhCCCcEEEEecCCCCCHHHHHH
Confidence 999999999988888876654567999999999998431 11 1111111111 11235799999999999999999
Q ss_pred HHHHH
Q 029978 175 WLVKH 179 (184)
Q Consensus 175 ~i~~~ 179 (184)
.+.+.
T Consensus 153 ~~~~~ 157 (158)
T cd04103 153 EAAQK 157 (158)
T ss_pred HHHhh
Confidence 98864
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-31 Score=184.14 Aligned_cols=158 Identities=24% Similarity=0.439 Sum_probs=127.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|||||||++++.++.+...+.+|.+..+. .+. ...+.+.+||+||++.+...+..+++.+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35689999999999999999999999888888888875543 232 33468999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|||++++++|..+..|+..+.... ...|+++|+||+|+.+... .++..+... ....+++++||++|.||+
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAG-----QMGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECCCCcCHH
Confidence 9999999999999988887765432 5789999999999975422 222222211 112469999999999999
Q ss_pred HHHHHHHHHhh
Q 029978 171 TVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
++|+++.+.+.
T Consensus 157 ~lf~~l~~~~~ 167 (199)
T cd04110 157 EMFNCITELVL 167 (199)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=179.61 Aligned_cols=158 Identities=20% Similarity=0.285 Sum_probs=126.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-+||+++|++|+|||||++++.++.+.....+|.+.... ..+.....+.+||+||++.+......+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 479999999999999999999998888877777664432 2333447899999999999998889999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+.... .+++|+++|+||+|+.... ..++...... ....+++++||+++.|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAK-----EHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHH
Confidence 99999999999988887776543 3679999999999997432 2233222221 12346999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+.+.+.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=183.56 Aligned_cols=158 Identities=26% Similarity=0.425 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC-CCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSE-DMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~-~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+||+++|++|||||||++++.++.+.. .+.+|.+.... .++...+.+.+|||||++++......+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888754 56667664442 2334457899999999999988888999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
||+++.+++..+..|+..+.... ..++|+++|+||+|+.... ..++... +.. ....+++++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~-l~~----~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGER-LAK----EYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHH-HHH----HcCCeEEEEeCCCCCCHHHH
Confidence 99999999999988877776543 2578999999999996432 2222222 111 11247999999999999999
Q ss_pred HHHHHHHhhhc
Q 029978 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
+++|.+.+.+.
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999887643
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-31 Score=179.11 Aligned_cols=153 Identities=21% Similarity=0.406 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----Ee--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+||+++|++|+|||||++++.++.+...+.+|.+..+.. +. ...+.+.+|||||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999998888888888765532 22 345789999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|...+.... .++|+++|+||+|+..... .++..+.... ..++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAKR-----LQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHHH-----cCCeEEEEECCCCCCHHH
Confidence 999999999999888877765432 5799999999999865322 2222222111 123699999999999999
Q ss_pred HHHHHHHH
Q 029978 172 VIDWLVKH 179 (184)
Q Consensus 172 l~~~i~~~ 179 (184)
+++.+.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99998764
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=179.03 Aligned_cols=158 Identities=25% Similarity=0.400 Sum_probs=125.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..++|+++|++|||||||++++.++.+...+.+|.+.... .++...+.+.+||+||++++...+..+++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 4589999999999999999999999998888888775543 234455789999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCC---CCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPS---LNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
|||+++.+++..+..|...+..... ..++|+++|+||+|+.... ..++..+.... ....+++++||++|.|+
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v 159 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATNV 159 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCCH
Confidence 9999999999998888776654322 2578999999999986432 23333322211 11236899999999999
Q ss_pred HHHHHHHHHH
Q 029978 170 DTVIDWLVKH 179 (184)
Q Consensus 170 ~~l~~~i~~~ 179 (184)
+++|+.+++.
T Consensus 160 ~~~~~~~~~~ 169 (170)
T cd04116 160 AAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999865
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=174.05 Aligned_cols=162 Identities=32% Similarity=0.631 Sum_probs=135.2
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..+.++|+++|++|+|||||++++.+..+. ...+|.+.....+...+..+.+||+||+..+...+..+++.++++++|+
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 355899999999999999999999976553 4566777666666667789999999999988888888899999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|+++..++.....++..+.......++|+++++||+|+......+++.+.++........++++++||++|.|+++++++
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 169 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNW 169 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHH
Confidence 99988878777777777766544567999999999999877667788888777665556667899999999999999999
Q ss_pred HHH
Q 029978 176 LVK 178 (184)
Q Consensus 176 i~~ 178 (184)
|.+
T Consensus 170 l~~ 172 (173)
T cd04155 170 VCK 172 (173)
T ss_pred Hhc
Confidence 875
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-31 Score=180.02 Aligned_cols=159 Identities=27% Similarity=0.468 Sum_probs=125.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--EeeCCEEEEEEeCCCcccch-HhHHHhccCCCEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFR-SMWERYCRAVSAIVY 93 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~ 93 (184)
.++|+++|++|+|||||++++..+.++..+.+|.+.... . .+...+.+.+|||+|++.+. ..+..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 479999999999999999999999988888888764433 2 33445789999999999886 467888899999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH-hHHHHHcCCCCcCCCceeEEEeeeCC---CCCH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKN---STNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v 169 (184)
|||+++++++..+..|...+.......++|+++|+||+|+...... .+....+.. ...++++++||++ +.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD----AHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH----HcCCcEEEEeccCCcCCCCH
Confidence 9999999999999888877766554568999999999998654321 122222221 1235699999999 8999
Q ss_pred HHHHHHHHHHhh
Q 029978 170 DTVIDWLVKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~~~ 181 (184)
+++|..+.+.++
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999987664
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=178.72 Aligned_cols=156 Identities=20% Similarity=0.342 Sum_probs=124.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.++|+++|++|||||||++++.++.+...+.+|.+.... .+. ...+.+.+||+||++.+...+..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999999888777787775443 233 2336799999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+.... ..+.|+++|+||+|+.... ..++...... ....+++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 99999999999988887776543 2468999999999986532 2222222221 12347999999999999999
Q ss_pred HHHHHHHh
Q 029978 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
++.+.+.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=185.58 Aligned_cols=161 Identities=19% Similarity=0.307 Sum_probs=128.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..+||+++|++|||||||++++.++.+...+.+|.+.... .+ +...+.+.+|||+|++++...+..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 35689999999999999999999999888788888775543 23 333478999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH-hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|||++++++|..+..|+..+... ...++|+++|+||+|+...... .+....+.. ...++++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~----~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAE----KEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCHHH
Confidence 999999999999988887776554 3367999999999998654221 222222221 1245799999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+.+.+.+.+
T Consensus 165 lf~~l~~~i~~ 175 (216)
T PLN03110 165 AFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999887754
|
|
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-31 Score=178.36 Aligned_cols=154 Identities=21% Similarity=0.327 Sum_probs=123.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.++.+.....++.+.... .++...+.+++||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888877777764433 23334478999999999999988999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++.+++..+..|+..+... ..+++|+++|+||+|+.+.. ..++....... ..++++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQE-----NGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHHH
Confidence 999999999988887766433 34789999999999996532 22232222221 12579999999999999999
Q ss_pred HHHHHH
Q 029978 174 DWLVKH 179 (184)
Q Consensus 174 ~~i~~~ 179 (184)
+++.+.
T Consensus 155 ~~~~~~ 160 (161)
T cd04113 155 LKCARS 160 (161)
T ss_pred HHHHHh
Confidence 999875
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=184.27 Aligned_cols=158 Identities=18% Similarity=0.305 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee---eEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
++|+++|++|||||||++++.++.++..+.+|++... ..++...+.+.+|||+|++.+...+..++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 4899999999999999999999999888888886222 2233345789999999999988888888899999999999
Q ss_pred CCCCCChHHHHHHHHHHhcC--------CCCCCCcEEEEeeCCCccC--cCCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 97 AADYDNLPVSRSELHDLLSK--------PSLNGIPLLVLGNKIDKPE--ALSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+++.++|..+..|+..+... ....++|+++|+||+|+.. ....+++.+.++.. ..++++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----ENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----CCCEEEEEeCCCC
Confidence 99999999998887777543 1235799999999999964 23445554444321 2456999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 029978 167 TNIDTVIDWLVKHSK 181 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~ 181 (184)
.|++++|+.|.+...
T Consensus 157 ~gI~elf~~L~~~~~ 171 (247)
T cd04143 157 SNLDEMFRALFSLAK 171 (247)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999998653
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=181.70 Aligned_cols=157 Identities=21% Similarity=0.333 Sum_probs=124.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+...+.+|.+..+. .++...+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998878888774442 23334578999999999999989999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... .++... +.. ...++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~-~~~----~~~~~~~evSa~~~~~i~~~f 154 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKS-FCD----SLNIPFFETSAKQSINVEEAF 154 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHH-HHH----HcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999988877776543 24689999999999874322 222211 111 123369999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.+.+.+..
T Consensus 155 ~~l~~~~~~ 163 (188)
T cd04125 155 ILLVKLIIK 163 (188)
T ss_pred HHHHHHHHH
Confidence 999987654
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=167.74 Aligned_cols=160 Identities=21% Similarity=0.316 Sum_probs=132.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+.-+|++++|+.|.|||+|+++|....|..+..+|++..+. .+-.+.+++++|||+||++|+...+++++++.+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 34589999999999999999999999999999999996654 24455689999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|||++++++|..+..|+.+.... ..+++-+++++||.|+.+. +++.-..+..+..+....++++||++|.||++.
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~---R~VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPE---REVTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChh---hhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 999999999999999988877654 4488999999999999766 333333333333444446899999999999999
Q ss_pred HHHHHHHh
Q 029978 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
|-...+.+
T Consensus 163 Fl~c~~tI 170 (214)
T KOG0086|consen 163 FLKCARTI 170 (214)
T ss_pred HHHHHHHH
Confidence 87666554
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=180.55 Aligned_cols=151 Identities=22% Similarity=0.403 Sum_probs=122.9
Q ss_pred EcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC
Q 029978 25 IGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 25 iG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
+|++|||||||++++..+.+...+.+|++..... ++...+.+.+|||+|++++..++..+++.++++++|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 6999999999999999999988889998765543 234568999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 101 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
++|..+..|...+.+.. .++|+++|+||+|+.......+.... .....+++++|||++|.||+++|+++.+.+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~~-----~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSITF-----HRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHHH-----HHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999988887776543 57999999999998643221111111 122345799999999999999999999876
Q ss_pred hh
Q 029978 181 KS 182 (184)
Q Consensus 181 ~~ 182 (184)
.+
T Consensus 154 ~~ 155 (200)
T smart00176 154 IG 155 (200)
T ss_pred Hh
Confidence 53
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=177.93 Aligned_cols=156 Identities=19% Similarity=0.288 Sum_probs=121.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE-Ee---eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~-~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.++.++..+.+|.+..+.. +. ...+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999999988888887655432 22 33578999999999999988899999999999999
Q ss_pred eCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcC------CHhHHHHHcCCCCcCCCce-eEEEeeeCCCC
Q 029978 96 DAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEAL------SKEDLMEQMGLKSITDREV-CCYMISCKNST 167 (184)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 167 (184)
|+++.++|..+.. |+..+... ..+.|+++|+||+|+.+.. ..++..+... .... +++++||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK-----KQGAFAYLECSAKTME 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH-----HcCCcEEEEccCCCCC
Confidence 9999999998875 44444332 2579999999999986532 1122111111 1112 68999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
|++++|+.+.+.+..
T Consensus 154 ~v~~~f~~l~~~~~~ 168 (187)
T cd04132 154 NVEEVFDTAIEEALK 168 (187)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987654
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=178.17 Aligned_cols=158 Identities=22% Similarity=0.319 Sum_probs=125.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.++|+++|++|+|||||++++.++.+...+.+|.+..+.. .+...+.+.+|||||++.+..++..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 3689999999999999999999999888888877644322 3334478999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++.....|...+.......+.|+++|+||+|+..... .++..+.. . .....+++++||+++.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~-~---~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLS-Q---QWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHH-H---HcCCceEEEeeCCCCCCHHHHH
Confidence 9999999999988877776544456899999999999865422 12221111 1 1112579999999999999999
Q ss_pred HHHHHHh
Q 029978 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+++.+.+
T Consensus 157 ~~i~~~~ 163 (168)
T cd04177 157 IDLVRQI 163 (168)
T ss_pred HHHHHHH
Confidence 9998754
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-30 Score=170.16 Aligned_cols=170 Identities=33% Similarity=0.676 Sum_probs=159.6
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.++.+++.+|+++|-.++||||++.++..++.... .||+++....+..+++.+.+||..|+++++..|..|++..+++|
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 46788999999999999999999999998887666 99999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
||+|.++++.+.+.++.+..++......+.|+++.+||.|++...++.++.+.+++.....+.+.+-.|+|.+|.|+.+-
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHH
Confidence 99999999999999999998888777789999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHhhhc
Q 029978 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
++++.+.+..+
T Consensus 170 l~wl~~~~~~~ 180 (181)
T KOG0070|consen 170 LDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHhcc
Confidence 99999988765
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=176.27 Aligned_cols=155 Identities=16% Similarity=0.309 Sum_probs=121.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC--CCCCCCCCCccceeeE----Ee-eCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATG--GYSEDMIPTVGFNMRK----VT-KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~--~~~~~~~~t~~~~~~~----~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+||+++|++|||||||++++..+ .++..+.+|.+..+.. ++ ...+.+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 6778888888755432 22 34589999999999999888899999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH-HHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED-LMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|+++.+++..+..|+..+.... .+.|+++|+||+|+.+...... ..+.+. .....+++++||+++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999988888877765542 5689999999999965432111 111111 11234699999999999999
Q ss_pred HHHHHHHHh
Q 029978 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+++.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998865
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=175.71 Aligned_cols=155 Identities=23% Similarity=0.379 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--Ee--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.+..+...+.++.+.++.. +. ...+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999988887777777654432 32 23467999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++..+..|+..+..... .+.|+++|+||+|+.... ..++...... ...++++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-----ELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEEeCCCCCCHHHHH
Confidence 99999999999888887765433 479999999999994322 2222222211 123579999999999999999
Q ss_pred HHHHHHh
Q 029978 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+++.+.+
T Consensus 155 ~~i~~~l 161 (161)
T cd01861 155 RKIASAL 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=178.67 Aligned_cols=159 Identities=19% Similarity=0.269 Sum_probs=119.2
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCC
Q 029978 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
|+++|++|||||||++++.++.+...+.+|....+. ..+...+.+.+|||||++.+...+..+++.+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 589999999999999999999998887777654432 23334568999999999999888888999999999999999
Q ss_pred CCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCCH-hHHHH--------HcCCCCcCCCc-eeEEEeeeCCCC
Q 029978 99 DYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-EDLME--------QMGLKSITDRE-VCCYMISCKNST 167 (184)
Q Consensus 99 ~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~~~Sa~~~~ 167 (184)
+.++|..+.. |+..+.... .++|+++|+||+|+...... ++..+ ........... .++++|||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999998865 555554432 57999999999999653210 00100 00000011122 369999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
|++++|+.+.+.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999987654
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-31 Score=178.65 Aligned_cols=155 Identities=28% Similarity=0.519 Sum_probs=127.4
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
||+++|++|||||||++++.++.++..+.+|.+..... .+...+.+.+||++|++.+.......++.+|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998655543 33455789999999999999989999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--CCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+++++++..+..|+..+..... .+.|+++|+||.|+.+. ...++..+... ....+++++||+++.||.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-----ELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-----HTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-----HhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999988887765544 67999999999999863 22233222221 1124799999999999999999
Q ss_pred HHHHHhh
Q 029978 175 WLVKHSK 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=174.40 Aligned_cols=160 Identities=18% Similarity=0.230 Sum_probs=119.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||++++.++.+...+.+|...... ..+...+.+.+|||||++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999888777777653321 233334678999999999998888889999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCC---------CcC-CCceeEEEeeeCCC
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK---------SIT-DREVCCYMISCKNS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~Sa~~~ 166 (184)
++++++|......|...+... ..+.|+++|+||+|+.+.....+........ ... ....++++|||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999988875444333332 4689999999999986542211111111100 001 12236999999999
Q ss_pred CCHHHHHHHHHHHh
Q 029978 167 TNIDTVIDWLVKHS 180 (184)
Q Consensus 167 ~~v~~l~~~i~~~~ 180 (184)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=172.19 Aligned_cols=159 Identities=25% Similarity=0.413 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+.....+|.+..... .....+.+.+||+||++.+...+..+++.+|+++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999998887777777654432 2334477889999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCC---CCCCcEEEEeeCCCccCc--CCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPS---LNGIPLLVLGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~---~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
|+++++++.....|...+..... ..++|+++|+||+|+... ...++..+.... ....+++++||++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS----NGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH----cCCceEEEEECCCCCCHH
Confidence 99999888888777666544322 347999999999999732 223333222221 113479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++.+.+.+.+
T Consensus 157 ~l~~~i~~~~~~ 168 (172)
T cd01862 157 QAFETIARKALE 168 (172)
T ss_pred HHHHHHHHHHHh
Confidence 999999987764
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-30 Score=174.12 Aligned_cols=156 Identities=26% Similarity=0.400 Sum_probs=124.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee----eEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|+|||||++++.++.+.....+|.+... ..++...+.+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999988776777766433 22344457899999999999888888899999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++.+++.....|+..+..... .++|+++++||+|+.... ..++..+.... ...+++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYADE-----NGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHH
Confidence 999999999998888887766543 689999999999987422 22332222111 1246999999999999999
Q ss_pred HHHHHHHh
Q 029978 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
++++.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99998875
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=174.46 Aligned_cols=158 Identities=21% Similarity=0.335 Sum_probs=126.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||++++.++.+...+.++....+. ..+...+.+.+||+||++.+...+..+++.++++++++|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999998888777777654332 233445789999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--CCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
++++.++.....++..+.......++|+++|+||+|+... ....+...... ....+++++||++|.|++++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-----QWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999888888876655568999999999999762 12222111111 1124699999999999999999
Q ss_pred HHHHHhhh
Q 029978 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
.+.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99987764
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-30 Score=178.64 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccch--------HhHHHhccC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFR--------SMWERYCRA 87 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~~ 87 (184)
++|+++|.+|||||||++++.++.++..+.||.+.... ..+...+.+.+|||||.+.+. ......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998888888764332 233444789999999965431 113345789
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKP--SLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+|++++|||+++++++..+..|+..+.... ...++|+++|+||+|+..... ..+..+.+. .....+++++|||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV---RKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH---HHhcCCcEEEecCC
Confidence 999999999999999999988887776543 246799999999999965321 111122111 01124579999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 029978 165 NSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~ 181 (184)
+|.||+++|+.+++.+.
T Consensus 158 ~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 158 YNWHILLLFKELLISAT 174 (198)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999997654
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-30 Score=174.13 Aligned_cols=157 Identities=24% Similarity=0.439 Sum_probs=124.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEee--CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.+..+.....++.+.... .+.. ....+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988887777777765432 2333 3378999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++..+..|+..+..... .++|+++|+||+|+.... ..++..+... ...++++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAE-----EHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHH
Confidence 99999999888887777655433 589999999999987532 2222222211 123469999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.+.+.+.+
T Consensus 155 ~~i~~~~~~ 163 (164)
T smart00175 155 EELAREILK 163 (164)
T ss_pred HHHHHHHhh
Confidence 999988754
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=176.00 Aligned_cols=156 Identities=18% Similarity=0.233 Sum_probs=118.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee---eEEeeCCEEEEEEeCCCccc-chHhHHHhccCCCEEEEEEe
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPR-FRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~i~v~d 96 (184)
+|+++|++|+|||||++++..+.+...+.+|..... ..++...+.+++||+||++. .......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 589999999999999999998888777777664322 23444557899999999985 34456778899999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCC-CHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNST-NIDTV 172 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~l 172 (184)
++++++|..+..|+..+..... ..+.|+++|+||+|+.... ..++..+... ....+++++||+++. ||+++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLAS-----ELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHH-----HcCCEEEEeCCCCCchhHHHH
Confidence 9999999988887766654432 4579999999999985432 2222222111 112469999999995 99999
Q ss_pred HHHHHHHhh
Q 029978 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
|+.+.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=170.52 Aligned_cols=156 Identities=16% Similarity=0.204 Sum_probs=123.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC-CCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS-EDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~-~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
++.+||+++|.+|||||||++++.++.+. ..+.+|.+..+. .++...+.+.+||++|++.+...+..+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 45789999999999999999999999998 888888875432 2334447899999999999888888889999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-----CHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-----SKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
++|+|++++.++..+..|+..+... .++|+++|+||+|+.+.. ..+++.+.++. ..++++||+++
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL-------PPPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCC-------CCCEEEEeccC
Confidence 9999999988888877776654322 479999999999986432 12333333222 13589999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.|++++|+.+.+.+.+
T Consensus 152 ~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 152 DSSNELFTKLATAAQY 167 (169)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 9999999999987653
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=179.59 Aligned_cols=159 Identities=19% Similarity=0.275 Sum_probs=126.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|+|||||++++.++.+...+.+|++.... .++...+.+.+|||+|++.+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 34589999999999999999999999888887788775542 23334478999999999999888899999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.... ..++..+... ...++++++||+++.|++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE 157 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999999999888877665432 3579999999999996532 2222222221 123469999999999999
Q ss_pred HHHHHHHHHhh
Q 029978 171 TVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
++|+++.+.+.
T Consensus 158 e~f~~l~~~~~ 168 (210)
T PLN03108 158 EAFIKTAAKIY 168 (210)
T ss_pred HHHHHHHHHHH
Confidence 99999987764
|
|
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=177.66 Aligned_cols=156 Identities=21% Similarity=0.296 Sum_probs=121.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC-CCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSE-DMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~-~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+||+++|++|+|||||++++.++.+.. .+.+|.+..+. .++...+.+.+||++|++++...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988874 57777764432 2334457788999999999988888899999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC------HhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS------KEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
||+++.+++..+..|+..+... ..+.|+++|+||+|+.+... .++..+.. ....++++++||+++.|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 153 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFA-----DEIKAQHFETSSKTGQN 153 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHH-----HHcCCeEEEEeCCCCCC
Confidence 9999999998887777766543 24789999999999864321 11111111 11234689999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029978 169 IDTVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~~~~ 182 (184)
++++++.+.+.+.+
T Consensus 154 v~~l~~~i~~~~~~ 167 (193)
T cd04118 154 VDELFQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987643
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=170.10 Aligned_cols=155 Identities=25% Similarity=0.440 Sum_probs=124.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.++.+.....++.+..... .....+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999888877677777654432 2334478999999999999888889999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++.+++..+..|+..+.......+.|+++|+||+|+.... ..++..+... ...++++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-----KHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-----HcCCEEEEEecCCCCCHHHHHH
Confidence 999999999888877777666556789999999999997332 2333222221 1245799999999999999999
Q ss_pred HHHHH
Q 029978 175 WLVKH 179 (184)
Q Consensus 175 ~i~~~ 179 (184)
.+.+.
T Consensus 156 ~~~~~ 160 (161)
T cd01863 156 ELVEK 160 (161)
T ss_pred HHHHh
Confidence 98875
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=177.06 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=116.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee---eEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+|++++|++|+|||||+.++.++.+...+.+|....+ ..++...+.+.+|||||++.+...+..+++.+|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999999999888888764222 2233445789999999999998888889999999999999
Q ss_pred CCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCCH---------hHHHHHcCCCCcCC-CceeEEEeeeCC
Q 029978 97 AADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---------EDLMEQMGLKSITD-REVCCYMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~Sa~~ 165 (184)
++++++|..... |+..+... ..+.|+++|+||+|+...... +.+..+........ ...++++|||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999988754 55455432 246899999999998643210 00000000000111 123799999999
Q ss_pred CCCHHHHHHHHHH
Q 029978 166 STNIDTVIDWLVK 178 (184)
Q Consensus 166 ~~~v~~l~~~i~~ 178 (184)
|.||+++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998864
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=167.02 Aligned_cols=161 Identities=23% Similarity=0.358 Sum_probs=133.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE-----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~-----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+++.++|++-+|||+|++.++.+.+..-..||++.++.. -++..+++++|||+||++++....++++.+-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 46889999999999999999999999999999999977642 2345589999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCC-CCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLN-GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|||.+|+++|..+..|..+..-....+ ++-..+||+|+|+... +++..+.+......+...++++||++|.||++
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq---RqVt~EEaEklAa~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ---RQVTAEEAEKLAASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh---ccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence 9999999999999999988765554434 4445779999999765 34433334444445556799999999999999
Q ss_pred HHHHHHHHhh
Q 029978 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
-|..+.+.+.
T Consensus 164 AF~mlaqeIf 173 (213)
T KOG0091|consen 164 AFDMLAQEIF 173 (213)
T ss_pred HHHHHHHHHH
Confidence 9999987764
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=171.70 Aligned_cols=159 Identities=21% Similarity=0.264 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+||+++|++|+|||||++++.++.++..+.++...... .++...+.+.+|||||++.+...+..++..+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999998887665444332222 2334668999999999988877777778999999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH---hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 98 ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
++++++..+..+|........ .+.|+++|+||+|+.+.... ++....+... .....++++|||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE--FREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHH--HhcccEEEEeccccccCHHHHHH
Confidence 999999987655544333323 47999999999999765432 1111111000 00112699999999999999999
Q ss_pred HHHHHhh
Q 029978 175 WLVKHSK 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
.+.+.+.
T Consensus 158 ~~~~~~~ 164 (166)
T cd01893 158 YAQKAVL 164 (166)
T ss_pred HHHHHhc
Confidence 9988764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=180.86 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=117.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC-CCCCCCcc--cee--eEEeeCCEEEEEEeCCCcccchHhHHHhcc-CCCEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS-EDMIPTVG--FNM--RKVTKGNVTIKLWDLGGQPRFRSMWERYCR-AVSAIVY 93 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~-~~~~~t~~--~~~--~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~~~~i~ 93 (184)
+||+++|++|+|||||++++..+.+. ..+.++.+ ... ..++.....+.+|||||++. .....+++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 66666664 222 23344567899999999982 23344556 8999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||++++.+|.....|+..+.......++|+|+|+||+|+.+... .++. .... ....++++++||+++.||++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~a----~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RACA----VVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHHH----HHcCCeEEEecCCCCCCHHH
Confidence 999999999998888888776654446899999999999865422 1211 1111 11234699999999999999
Q ss_pred HHHHHHHHhh
Q 029978 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
+++.+.+.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=178.58 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=112.5
Q ss_pred ceEEEEEcCCCCChHHHHH-HHHcC-----CCCCCCCCCccc-e-ee-----------EEeeCCEEEEEEeCCCcccchH
Q 029978 19 EMELSLIGLQNAGKTSLVN-VIATG-----GYSEDMIPTVGF-N-MR-----------KVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~-~l~~~-----~~~~~~~~t~~~-~-~~-----------~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
.+||+++|++|||||||+. ++.++ .+...+.||++. . +. .++...+.+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 56543 345667788742 1 11 23455689999999999753
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCC----------------HhHH
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALS----------------KEDL 142 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~----------------~~~~ 142 (184)
....+++.+|++++|||++++++|..+.. |...+.... .+.|+++|+||+|+.+... .+.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 34567899999999999999999999974 656554432 4789999999999864200 0111
Q ss_pred HHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 143 MEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
....+........+++++|||++|.||+++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 1111111222234579999999999999999999864
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=178.78 Aligned_cols=161 Identities=21% Similarity=0.371 Sum_probs=122.9
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--EeeCCEEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
..+..+||+++|++|+|||||++++.++.+. .+.+|.+.... . ++...+.+.+|||||++++...+..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 3455799999999999999999999987663 55666664432 2 23345789999999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcC-CCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSK-PSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+++|||++++++|..+...|...... ....+.|+++|+||+|+..... .++...... ...++++++||+++.
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~SAk~~~ 163 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK-----EHGCLFLECSAKTRE 163 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCEEEEEeCCCCC
Confidence 99999999999999988765544332 2235689999999999965422 222222111 123469999999999
Q ss_pred CHHHHHHHHHHHhh
Q 029978 168 NIDTVIDWLVKHSK 181 (184)
Q Consensus 168 ~v~~l~~~i~~~~~ 181 (184)
|++++++.+.+.+.
T Consensus 164 ~v~~l~~~l~~~~~ 177 (211)
T PLN03118 164 NVEQCFEELALKIM 177 (211)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
|
|
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=158.59 Aligned_cols=166 Identities=31% Similarity=0.589 Sum_probs=148.5
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..++++|.++|..|+||||++++|.+ .......||.++.......+.+.+++||.+||...+..|..|+...|++|+|+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~-~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvv 91 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLG-EDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVV 91 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcC-CCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEE
Confidence 35689999999999999999999974 44778899999999999999999999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc-CCCceeEEEeeeCCCCCHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|++++-.+++-...+.+++......+.|++++.||.|+......+++....++... +.+.++++-|||.+|.++.+-++
T Consensus 92 DssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gid 171 (185)
T KOG0073|consen 92 DSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGID 171 (185)
T ss_pred ECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHH
Confidence 99998888888888887777666678999999999999988888899888887776 67788999999999999999999
Q ss_pred HHHHHhhh
Q 029978 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
++..-+.+
T Consensus 172 WL~~~l~~ 179 (185)
T KOG0073|consen 172 WLCDDLMS 179 (185)
T ss_pred HHHHHHHH
Confidence 98876653
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-29 Score=171.01 Aligned_cols=159 Identities=19% Similarity=0.262 Sum_probs=118.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.||+++|++|||||||++++.++.++..+.+|...... .++...+.+.+|||+|++.+...+...++.+|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999998888888764432 233445789999999999888877788899999999999
Q ss_pred CCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC---------c-CCCceeEEEeeeCC
Q 029978 97 AADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS---------I-TDREVCCYMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~Sa~~ 165 (184)
+++.+++..+.. |...+... ..+.|+++|+||+|+.+.....+......... . .....++++|||++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999988888765 44444332 24789999999999865422111111100000 0 01134799999999
Q ss_pred CCCHHHHHHHHHHHh
Q 029978 166 STNIDTVIDWLVKHS 180 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~ 180 (184)
|.|++++|+.+.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-29 Score=169.96 Aligned_cols=155 Identities=24% Similarity=0.350 Sum_probs=120.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.++.+.....++...... . .....+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999988887666666543332 2 2234467999999999999888888999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++.+++.....|...+..... .++|+++|+||+|+..... .++..+... ....+++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHH
Confidence 99999998888887777765543 3799999999999975322 222222211 123468999999999999999
Q ss_pred HHHHHHh
Q 029978 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998765
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-30 Score=167.41 Aligned_cols=160 Identities=24% Similarity=0.341 Sum_probs=128.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..||++++|+.++|||||+-++..+.|..+...|....+. .+......+.+|||+||++|..+=+-|+++++++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 4699999999999999999999999998887777663332 233445679999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|||++++++|+....|..++..... ..+-+++|+||+|+.++ +.+..+.++.......+.++++||+++.||.++|
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEee---R~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elF 167 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEE---RQVTRQEAEAYAESVGALYMETSAKDNVGISELF 167 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHh---hhhhHHHHHHHHHhhchhheecccccccCHHHHH
Confidence 9999999999999999888876644 67889999999999765 2222222222222234459999999999999999
Q ss_pred HHHHHHhh
Q 029978 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
+.+.+...
T Consensus 168 e~Lt~~Mi 175 (218)
T KOG0088|consen 168 ESLTAKMI 175 (218)
T ss_pred HHHHHHHH
Confidence 99887644
|
|
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=169.28 Aligned_cols=159 Identities=23% Similarity=0.365 Sum_probs=122.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+...+|+++|++|+|||||++++.++.+.....+|.+.... .+....+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 34589999999999999999999988887777777664332 22333467899999999999888889999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH-hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|+++.+++.....|...+... ...+.|+++|+||+|+.+.... .+..+.+... ...+++++||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~----~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSDA----QDMYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHH----cCCeEEEeeCCCCCCHHH
Confidence 999999988888887776655433 2357999999999998654221 2222222211 124699999999999999
Q ss_pred HHHHHHHHh
Q 029978 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+++.|.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998764
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-29 Score=171.87 Aligned_cols=158 Identities=17% Similarity=0.324 Sum_probs=125.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.||+++|++|+|||||++++.++.+...+.+|...... ... ...+.+.+|||||++++...+..++..+++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999988887777777654322 222 234678999999999998888899999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+++..++..+..++..+.+.....+.|+++|+||+|+.... ..++...... ....+++++||+++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-----SWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999998888876655788999999999986432 2222211111 1124699999999999999999
Q ss_pred HHHHHhhh
Q 029978 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
++.+.+..
T Consensus 157 ~l~~~~~~ 164 (180)
T cd04137 157 LLIEEIEK 164 (180)
T ss_pred HHHHHHHH
Confidence 99987754
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=170.83 Aligned_cols=157 Identities=21% Similarity=0.295 Sum_probs=122.9
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccc-eeeEEeeC--CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGF-NMRKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~-~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
||+++|++|+|||||+++++++.+...+.+|... ....+... .+.+++||+||+..+..++..++..+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 5899999999999999999999888777777642 22223333 37899999999999888888899999999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 98 ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
++.+++..+..++..+.......++|+++|+||+|+..... .++..+.... ....+++++||++|.|++++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVEL----DWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHh----hcCCcEEEecCCCCCCHHHHHH
Confidence 99999999888877777665556899999999999865311 1222211111 1224689999999999999999
Q ss_pred HHHHHhh
Q 029978 175 WLVKHSK 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998764
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=169.10 Aligned_cols=158 Identities=17% Similarity=0.285 Sum_probs=116.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||++++.++.+...+.++...... ..+...+.+.+||+||++.+.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999998887666666543222 223345789999999999887777888899999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH--------HHHHcCCCCcC-CCceeEEEeeeCCCC
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED--------LMEQMGLKSIT-DREVCCYMISCKNST 167 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 167 (184)
++++.++......|........ .+.|+++|+||+|+.+...... +.......... ....+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9998888887765554443322 4799999999999976543211 00111111111 122379999999999
Q ss_pred CHHHHHHHHHH
Q 029978 168 NIDTVIDWLVK 178 (184)
Q Consensus 168 ~v~~l~~~i~~ 178 (184)
|++++++.|.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999876
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=165.19 Aligned_cols=155 Identities=23% Similarity=0.357 Sum_probs=122.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEeeC--CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
||+++|++|||||||++++.+..+...+.++...... ..... .+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 5899999999999999999988887777777663322 23233 47899999999999888889999999999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 98 ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
++++++.....++..+.........|+++|+||+|+.... ..++...... ....+++++||+++.|++++++.
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999888888888766554689999999999997632 1222222211 11146999999999999999999
Q ss_pred HHHHh
Q 029978 176 LVKHS 180 (184)
Q Consensus 176 i~~~~ 180 (184)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-27 Score=149.31 Aligned_cols=170 Identities=32% Similarity=0.631 Sum_probs=157.0
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
...+..++++|+.+|-.++||||++.++.- .-+....||+++....+...++.+++||.+|+.+.+..|..|+.+..++
T Consensus 10 ~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl-~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqgl 88 (180)
T KOG0071|consen 10 SKIFGNKEMRILMLGLDAAGKTTILYKLKL-GQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 88 (180)
T ss_pred HHHhCcccceEEEEecccCCceehhhHHhc-CCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceE
Confidence 456788899999999999999999999974 4456677899999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||+|+.+.+.+.+.+..+..+++....++.|+.+.+||.|+++...++|+.+.+.+...+.+.+.+.+++|.+|.|+.+
T Consensus 89 IFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 89 IFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 99999999999999999999998888888999999999999999999999999999998888888899999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
-+.++...++.
T Consensus 169 glswlsnn~~~ 179 (180)
T KOG0071|consen 169 GLSWLSNNLKE 179 (180)
T ss_pred HHHHHHhhccC
Confidence 99999987764
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=159.48 Aligned_cols=153 Identities=26% Similarity=0.473 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--Ee--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
++|+++|++|+|||||++++.+..+...+.+|.+..... +. .....+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999999998888877777755543 22 23478999999999999889999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc--CcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP--EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++..+..|+..+..... .+.|+++++||+|+. .....++..+.... ...+++++||+++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-----NGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHH
Confidence 99998888888887776665432 579999999999995 22233333332221 34579999999999999999
Q ss_pred HHHHH
Q 029978 174 DWLVK 178 (184)
Q Consensus 174 ~~i~~ 178 (184)
++|.+
T Consensus 155 ~~i~~ 159 (159)
T cd00154 155 QSLAE 159 (159)
T ss_pred HHHhC
Confidence 98863
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=165.53 Aligned_cols=156 Identities=21% Similarity=0.265 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.|++++|++|+|||||++++..+.++..+.+|....+.. .+.....+.+||++|++.+.......++.++++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 589999999999999999999888887777776544332 23334678999999998887766677889999999999
Q ss_pred CCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCC------------HhHHHHHcCCCCcCCCceeEEEeee
Q 029978 97 AADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALS------------KEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++.+++..+.. |...+.... .++|+++|+||+|+.+... .++. ..... .....++++|||
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~e~Sa 155 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQG-KRVAK---EIGAKKYMECSA 155 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHH-HHHHH---HhCCcEEEEccC
Confidence 999999998875 445444332 4699999999999854211 0111 11110 011236999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
++|.|++++|+.+.+.+.
T Consensus 156 ~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 156 LTGEGVDDVFEAATRAAL 173 (187)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999997654
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-28 Score=168.52 Aligned_cols=162 Identities=23% Similarity=0.337 Sum_probs=135.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
...+|+++|.+|+|||+|..++..+.|...+.||++..+. .++...+.+.++||+|++.+..+...+++..|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 4679999999999999999999999999999999985443 3566678999999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++.||..+...+..+.+......+|+++||||+|+.... ++..+.+........++++++||+.+.||+++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R---~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERER---QVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcc---ccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 9999999999999999998666666778999999999998741 1111112111333455699999999999999999
Q ss_pred HHHHHhhh
Q 029978 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
.+.+.+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99987654
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=165.10 Aligned_cols=160 Identities=23% Similarity=0.414 Sum_probs=128.2
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE----eeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
....+||+++|++|||||||++++..+.+...+.+|.+...... +.+.+.+.+|||+|++.+...+..+++.++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 34569999999999999999999988889888889988666542 34568999999999999988888899999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|+|+++..++..+..|+..+.... .++|+++|+||+|+.+.....+..... ......++++||++|.|+++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFH-----RKKNLQYYDISAKSNYNFEK 158 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999888877775432 578999999999986532212222111 11234689999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
.+.+|.+.+..
T Consensus 159 ~f~~ia~~l~~ 169 (215)
T PTZ00132 159 PFLWLARRLTN 169 (215)
T ss_pred HHHHHHHHHhh
Confidence 99999887653
|
|
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-29 Score=163.42 Aligned_cols=160 Identities=21% Similarity=0.367 Sum_probs=130.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----Ee---------eCCEEEEEEeCCCcccchHhHHHhcc
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VT---------KGNVTIKLWDLGGQPRFRSMWERYCR 86 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~---------~~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (184)
++...+|++|+||||++.++..+.|.++...|++.++.. ++ ...+.+++|||+||++|+++.-.+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 455789999999999999999999999999998866543 11 12378999999999999999999999
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.+=+++++||+++.+||-+.+.|+..+..+.+..+.-|++++||+|+++... +.+.........-..|++++||-+|
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~---Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRV---VSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhh---hhHHHHHHHHHHhCCCeeeeccccC
Confidence 9999999999999999999999999998777777888999999999977532 2221111111222447999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.||++-.+.+++.+.+
T Consensus 167 ~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 167 TNVEKAVELLLDLVMK 182 (219)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999998888877653
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-27 Score=163.71 Aligned_cols=117 Identities=27% Similarity=0.401 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe-------eCCEEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT-------KGNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~-------~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
+||+++|++|||||||++++.++.+...+.+|++.... ... ...+.+++|||+|++.+...+..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999999888899874432 121 245789999999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcCC------------------CCCCCcEEEEeeCCCccCc
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSKP------------------SLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~piilv~nK~D~~~~ 136 (184)
+|+|||++++++|..+..|+.++.... ...++|+++|+||+|+.+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 999999999999999999988876531 2357899999999999654
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=154.27 Aligned_cols=157 Identities=20% Similarity=0.198 Sum_probs=107.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCCE-EEEEEeCCCccc----c---hHhHHHhccCCCE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGNV-TIKLWDLGGQPR----F---RSMWERYCRAVSA 90 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~----~---~~~~~~~~~~~~~ 90 (184)
+|+++|.+|||||||++++.+.... ..+..|.......+..... .+.+|||||+.. . .......+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 5899999999999999999865432 1122343333333444444 899999999632 1 1122233456999
Q ss_pred EEEEEeCCCC-CChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 91 IVYVVDAADY-DNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 91 ~i~v~d~~~~-~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|+++. +++.....+...+..... ..++|+++|+||+|+.+.....+......... ...+++++||+++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL---WGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC---CCCCEEEEecCCCCC
Confidence 9999999998 788887777666654322 24789999999999976544333322221110 234689999999999
Q ss_pred HHHHHHHHHHHh
Q 029978 169 IDTVIDWLVKHS 180 (184)
Q Consensus 169 v~~l~~~i~~~~ 180 (184)
++++++++.+++
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=152.94 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=104.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCC--CCCCccceeeEEeeCCEEEEEEeCCCcccc----h-----HhHHHhccCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF----R-----SMWERYCRAVS 89 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~----~-----~~~~~~~~~~~ 89 (184)
+|+++|++|+|||||++++.+..+... ...|...........+..+.+|||||+... . .........+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 689999999999999999998766422 223444444444556689999999997421 0 11111123468
Q ss_pred EEEEEEeCCCCCCh--HHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 90 AIVYVVDAADYDNL--PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 90 ~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|+|+++..++ .....++..+.... .+.|+++|+||+|+.......+. +.. ......++++|||++|.
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEI-EEE----EELEGEEVLKISTLTEE 154 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHH-HHh----hhhccCceEEEEecccC
Confidence 99999999987654 44444555543322 47999999999999765332321 111 11234579999999999
Q ss_pred CHHHHHHHHHHHh
Q 029978 168 NIDTVIDWLVKHS 180 (184)
Q Consensus 168 ~v~~l~~~i~~~~ 180 (184)
|++++++++.+.+
T Consensus 155 gi~~l~~~l~~~~ 167 (168)
T cd01897 155 GVDEVKNKACELL 167 (168)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998875
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-27 Score=160.36 Aligned_cols=163 Identities=18% Similarity=0.322 Sum_probs=127.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEe-eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVT-KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+|++++|+..+|||+|+..+..+.|+..+.||+...+. .++ +..+.+.+|||+||++|..++...+..+|++++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 4689999999999999999999999999999999974442 353 677899999999999998888788999999999
Q ss_pred EEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc---------CC-CceeEEEee
Q 029978 94 VVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI---------TD-REVCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~S 162 (184)
||++.++++|.++.. |+.++..+ + +++|+|+||+|.|+.+.....+.....+.... .. ....+++||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~-c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHH-C-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhh-C-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 999999999999774 55555443 4 79999999999999854211111111111111 11 125699999
Q ss_pred eCCCCCHHHHHHHHHHHhhh
Q 029978 163 CKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~ 182 (184)
|++..|++++|+..+.++..
T Consensus 161 a~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhc
Confidence 99999999999999887643
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-28 Score=156.01 Aligned_cols=151 Identities=27% Similarity=0.436 Sum_probs=123.4
Q ss_pred EEEcCCCCChHHHHHHHHcCCCCC-CCCCCcccee----eEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeC
Q 029978 23 SLIGLQNAGKTSLVNVIATGGYSE-DMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 23 ~iiG~~g~GKStli~~l~~~~~~~-~~~~t~~~~~----~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+++|++++|||+|+-++..+-|-. ....|++.++ ..++..++++++|||+||++|++....+++.+|++++++|+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 368999999999999888776643 3445666444 34567789999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc-----CCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 98 ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA-----LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
.+..||.+.+.|+.++-.+.. ..+.+++++||+|+.++ ++-+.+.+.++ +|++++||++|.||+-.
T Consensus 81 ankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~--------ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYG--------IPFMETSAKTGFNVDLA 151 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHHHHC--------CCceeccccccccHhHH
Confidence 999999999999988866543 67889999999999664 22344444444 36999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|-.|.+.+++
T Consensus 152 f~~ia~~l~k 161 (192)
T KOG0083|consen 152 FLAIAEELKK 161 (192)
T ss_pred HHHHHHHHHH
Confidence 9988877664
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=146.72 Aligned_cols=155 Identities=21% Similarity=0.304 Sum_probs=128.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee----eEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.-++-.|+|+-|+|||+|+.++....|..+-.+|++..+ ..+...++++++|||+|+++|+...+++++++...++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 347889999999999999999999999988888888554 3466778999999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH-----hHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|+|++.+..+..+-.|+.+..... .++..+++++||.|+....++ .+..++- ...++++||++|.|
T Consensus 90 vyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeeak~faeen--------gl~fle~saktg~n 160 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAKEFAEEN--------GLMFLEASAKTGQN 160 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHHHHHhhc--------CeEEEEecccccCc
Confidence 999999999999988887775543 388899999999999765331 2222222 33589999999999
Q ss_pred HHHHHHHHHHHhh
Q 029978 169 IDTVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~~~ 181 (184)
|++.|-...+.+.
T Consensus 161 vedafle~akkiy 173 (215)
T KOG0097|consen 161 VEDAFLETAKKIY 173 (215)
T ss_pred HHHHHHHHHHHHH
Confidence 9998866655544
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=152.96 Aligned_cols=152 Identities=17% Similarity=0.162 Sum_probs=101.9
Q ss_pred EEEEEcCCCCChHHHHHHHHcC---CCCCCC--CCCccceeeEEeeC-CEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATG---GYSEDM--IPTVGFNMRKVTKG-NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~---~~~~~~--~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.|+++|++|+|||||++++.+. .++... ..|........... ...+.+|||||++++......+++.+|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 5899999999999999999853 233222 23444444444443 67899999999998877777788899999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC----HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS----KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+++... ......+.. .... ...|+++|+||+|+.+... .+++.+.+... .....+++++||+++.|++
T Consensus 82 ~d~~~~~~-~~~~~~~~~-~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 82 VAADEGIM-PQTREHLEI-LELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EECCCCcc-HhHHHHHHH-HHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCcCHH
Confidence 99986221 111122221 1111 1249999999999975421 12222222211 0124579999999999999
Q ss_pred HHHHHHHH
Q 029978 171 TVIDWLVK 178 (184)
Q Consensus 171 ~l~~~i~~ 178 (184)
++++.+.+
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99998864
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-25 Score=152.07 Aligned_cols=151 Identities=19% Similarity=0.290 Sum_probs=107.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC-------CCCCCCCCc------cce----eeEE-----eeCCEEEEEEeCCCcccch
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGG-------YSEDMIPTV------GFN----MRKV-----TKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~-------~~~~~~~t~------~~~----~~~~-----~~~~~~~~~~D~~g~~~~~ 78 (184)
+|+++|++++|||||++++++.. +...+.++. +.. .... +...+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998631 111222221 111 1112 3456889999999999999
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH---hHHHHHcCCCCcCCCc
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---EDLMEQMGLKSITDRE 155 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 155 (184)
..+..+++.+|++++|+|+++..++.....+.. ... .++|+++|+||+|+.+.... +++.+.++.. .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----P 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----c
Confidence 999999999999999999998766555544432 221 46899999999998653221 2232332221 1
Q ss_pred eeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 156 VCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 156 ~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
..++++||++|.|++++++++.+.+.
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 24899999999999999999998764
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=152.53 Aligned_cols=154 Identities=23% Similarity=0.256 Sum_probs=106.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCCccceeeEEeeCC-EEEEEEeCCCcccc---------hHhHHHh
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSE--DMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRF---------RSMWERY 84 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~---------~~~~~~~ 84 (184)
+..++|+++|++|||||||++++.+..+.. .+.+|.......+...+ ..+.+|||||.... ... ...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRST-LEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHH-HHH
Confidence 345899999999999999999999876432 23445444444443333 48999999997321 111 123
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+..+|++++|+|++++.++.....+...+ ......++|+++|+||+|+.+..... .. ......+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcC
Confidence 56899999999999887776654444333 33333578999999999997653222 11 11234469999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 029978 165 NSTNIDTVIDWLVKHS 180 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~ 180 (184)
++.|+++++++|.+.+
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998754
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-25 Score=157.35 Aligned_cols=161 Identities=25% Similarity=0.311 Sum_probs=104.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCC-----------cccchHhHHHhc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG-----------QPRFRSMWERYC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~ 85 (184)
...++|+++|.+|+|||||++++.+..+.....++.......+... .+.+||||| ++.++..+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 3468999999999999999999998776655555444433344333 589999999 455555544444
Q ss_pred ----cCCCEEEEEEeCCCCCChHH---------HHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCC
Q 029978 86 ----RAVSAIVYVVDAADYDNLPV---------SRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKS 150 (184)
Q Consensus 86 ----~~~~~~i~v~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~ 150 (184)
..++++++|+|.+....+.. ....+...+. ..++|+++|+||+|+.+.. ..+++.+.++...
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 34578888888865322100 0111122222 2479999999999996543 2334444444321
Q ss_pred cC-CCceeEEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 151 IT-DREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 151 ~~-~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
.. ....+++++||++| |+++++++|.+.+.+.
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 11 11235899999999 9999999999887653
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-24 Score=144.11 Aligned_cols=153 Identities=20% Similarity=0.332 Sum_probs=115.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--EeeCC--EEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++....++..+.++....... +...+ +.+.+||+||++.+...+....+.++.++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 689999999999999999999888776766666655543 44455 78999999999999888888889999999999
Q ss_pred eCCCC-CChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADY-DNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~-~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|.... .++.... .+...+..... .+.|+++|+||+|+......++........ ...+++++||+++.|+++++
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~sa~~~~gv~~~~ 156 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKL----NGEPIIPLSAETGKNIDSAF 156 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhc----cCCceEEeecCCCCCHHHHH
Confidence 99876 5665555 44444443332 288999999999997653233333332221 22359999999999999999
Q ss_pred HHHH
Q 029978 174 DWLV 177 (184)
Q Consensus 174 ~~i~ 177 (184)
+.|.
T Consensus 157 ~~l~ 160 (161)
T TIGR00231 157 KIVE 160 (161)
T ss_pred HHhh
Confidence 9864
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=161.82 Aligned_cols=156 Identities=20% Similarity=0.241 Sum_probs=109.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccc-hH-------hHHHhcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-RS-------MWERYCR 86 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-~~-------~~~~~~~ 86 (184)
+..+|+++|.+|||||||++++.+..+. +.+.+|.......+...+..+.+|||||.... .. .....+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~ 130 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLH 130 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhh
Confidence 4569999999999999999999987653 44555655544555667788999999997432 11 1223467
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.+|++++|+|..+ ++.....++...... .+.|.++|+||+|+.+. ...+..+.+... .....++++||++|
T Consensus 131 ~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAktg 201 (339)
T PRK15494 131 SADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALSG 201 (339)
T ss_pred hCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccCc
Confidence 8999999999765 455554444433332 34678899999998653 233444433221 12346999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.|++++++++.+.+.+
T Consensus 202 ~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 202 KNIDGLLEYITSKAKI 217 (339)
T ss_pred cCHHHHHHHHHHhCCC
Confidence 9999999999987653
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=161.76 Aligned_cols=159 Identities=17% Similarity=0.201 Sum_probs=112.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEee-CCEEEEEEeCCCccc-------chHhHHHhccCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR-------FRSMWERYCRAVS 89 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~~ 89 (184)
..|+++|.||||||||++++.+.... ..+.+|.......+.. ....+.+||+||... ........+..++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 45899999999999999999864422 2234455555555554 446799999999632 2233444567899
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccCcCCHh-HHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|+|+++.+++.....|..++..+.. ..++|+++|+||+|+.+..... +..+... .....+++++||+++.
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~----~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL----AALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH----HhcCCCEEEEEcCCCC
Confidence 99999999988888888777777754422 2478999999999997543222 1111110 1122469999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
|++++++++.+.+.+
T Consensus 315 GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 315 GLDELLRALWELLEE 329 (335)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988764
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=147.62 Aligned_cols=172 Identities=32% Similarity=0.617 Sum_probs=146.1
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHc-------CCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHh
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIAT-------GGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY 84 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~-------~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 84 (184)
...+.+..+.++|+|..++|||||+.+... +-.+.+..+|++....+++..+-.+.+||..|++..+++|..+
T Consensus 10 ~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 10 KYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred HHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHH
Confidence 345667789999999999999999998863 2224566788888888887778899999999999999999999
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCC-CCcCCCceeEEEeee
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL-KSITDREVCCYMISC 163 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa 163 (184)
+..+|++++++|+++++.|+.....+..+..+....++|+++.+||.|+.+...+.++..-.+. .....+..++.++||
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchh
Confidence 9999999999999999999998888888887777789999999999999988777777666553 233445678999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 029978 164 KNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~~~ 183 (184)
.+|.||++-.+++.+.+..+
T Consensus 170 l~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcccHHHHHHHHHHHHhhc
Confidence 99999999999999887654
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=146.16 Aligned_cols=156 Identities=22% Similarity=0.260 Sum_probs=108.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEee---CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.|+++|.+|+|||||++++..+.+.....+ |.......... ....+.+|||||++.+...+...++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998776554322 32222233333 3678999999999988888888889999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHH---HcCCCC--cCCCceeEEEeeeCCCCCHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLME---QMGLKS--ITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~Sa~~~~~v~ 170 (184)
|+++...-.. ...+..+ .. .++|+++|+||+|+.... .+...+ .+.... .....++++++||+++.|++
T Consensus 82 d~~~~~~~~~-~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQT-IEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHH-HHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 9987542221 1122222 21 468999999999987532 222222 222111 12234679999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+...+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T cd01887 156 DLLEAILLLAEK 167 (168)
T ss_pred HHHHHHHHhhhc
Confidence 999999987653
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-24 Score=156.85 Aligned_cols=153 Identities=18% Similarity=0.159 Sum_probs=103.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccch--------HhHHHhccCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR--------SMWERYCRAVS 89 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~~~~ 89 (184)
+|+++|.+|+|||||+|++++.... +.+..|...........+..+.+|||||..... ......+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999986542 333344433223334456789999999965321 12345678999
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+.....+....+... ....+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL---EDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh---cCCCceEEEecCCCCCH
Confidence 999999999866553 222332222 468999999999996432211112121111 11226899999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++++.+.+.+.+
T Consensus 153 ~~L~~~l~~~l~~ 165 (270)
T TIGR00436 153 SFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999987753
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=140.79 Aligned_cols=145 Identities=18% Similarity=0.160 Sum_probs=104.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccchH--------hHHHhccC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS--------MWERYCRA 87 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~ 87 (184)
+++|+++|++|+|||||++++.+.... .....+.......+......+.+|||||...+.. .....+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 468999999999999999999976532 2222233333334555677899999999754422 23345678
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~ 143 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGE 143 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCC
Confidence 999999999998776655433222 357999999999999765332 122234579999999999
Q ss_pred CHHHHHHHHHHHh
Q 029978 168 NIDTVIDWLVKHS 180 (184)
Q Consensus 168 ~v~~l~~~i~~~~ 180 (184)
|+++++++|.+.+
T Consensus 144 ~v~~l~~~l~~~~ 156 (157)
T cd04164 144 GLDELKEALLELA 156 (157)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998765
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=164.60 Aligned_cols=160 Identities=22% Similarity=0.170 Sum_probs=109.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcc----------cchHhH-HH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP----------RFRSMW-ER 83 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~-~~ 83 (184)
...+|+++|.+|+|||||++++++.... .....|.......+...+..+.+|||||.. .+.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 3589999999999999999999977542 223333333333445566778999999953 222221 23
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++.+|++++|+|+++..+++... ++..+.. .++|+++|+||+|+.+..........+.........++++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 568999999999999987777653 3333322 46899999999999754322222222221112223457899999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 029978 164 KNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~~ 182 (184)
++|.||+++++.+.+.+.+
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987753
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=145.50 Aligned_cols=156 Identities=21% Similarity=0.210 Sum_probs=112.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCC------------------CCccceeeEEeeCCEEEEEEeCCCcccchHhHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMI------------------PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~------------------~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (184)
+|+++|.+|+|||||++.+.+........ .+..............+.+|||||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999999765544331 222233334555678899999999998888888
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh----HHHHHcCCCCc-------
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE----DLMEQMGLKSI------- 151 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~----~~~~~~~~~~~------- 151 (184)
.+++.+|++++|+|+........ ...+..... .+.|+++|+||+|+....... ++.+.++....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 88999999999999987554322 222222222 579999999999998643322 23233322111
Q ss_pred --CCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 152 --TDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 152 --~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
.....+++++||++|.|++++++++.+.+.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 124568999999999999999999998775
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=150.48 Aligned_cols=163 Identities=25% Similarity=0.392 Sum_probs=123.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEe----eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.++|+++|++|+|||||++++.++.+...+.+|++..+.... ...+++.+|||+|++.++..+..+..++++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 489999999999999999999999999999988775554322 1257799999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHH-HHH----------cCCCCcC-CCceeEEEee
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDL-MEQ----------MGLKSIT-DREVCCYMIS 162 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~-~~~----------~~~~~~~-~~~~~~~~~S 162 (184)
+|..+..++.+....|..........+.|+++|+||+|+......... ... ....... .....++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 999996666666655554444433357999999999999876432111 111 0000001 1122389999
Q ss_pred eC--CCCCHHHHHHHHHHHhh
Q 029978 163 CK--NSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 163 a~--~~~~v~~l~~~i~~~~~ 181 (184)
++ .+.++++++..+...+.
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHH
Confidence 99 99999999999988774
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-24 Score=156.83 Aligned_cols=122 Identities=20% Similarity=0.365 Sum_probs=102.9
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEee---------------CCEEEEEEeCCCcccc
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTK---------------GNVTIKLWDLGGQPRF 77 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~---------------~~~~~~~~D~~g~~~~ 77 (184)
.....+||+++|+.|||||||++++.++.+...+.+|++.... .+.. ..+.+++|||+|++++
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 3445699999999999999999999999998888999886542 2221 3478999999999999
Q ss_pred hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-----------CCCCcEEEEeeCCCccCc
Q 029978 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-----------LNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~D~~~~ 136 (184)
..++..+++.++++|+|||+++.+++..+..|+..+..... ..++|++||+||+|+...
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 99999999999999999999999999999999888865421 135899999999999653
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-24 Score=147.11 Aligned_cols=153 Identities=24% Similarity=0.233 Sum_probs=104.3
Q ss_pred EEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEeeC-CEEEEEEeCCCcccc-------hHhHHHhccCCCEEEE
Q 029978 24 LIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPRF-------RSMWERYCRAVSAIVY 93 (184)
Q Consensus 24 iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~-------~~~~~~~~~~~~~~i~ 93 (184)
++|++|||||||++++.+... ......|........... ...+.+|||||.... .......++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998754 222334444444444455 678999999996321 1123445678999999
Q ss_pred EEeCCCC------CChHHHHHHHHHHhcCCC------CCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEe
Q 029978 94 VVDAADY------DNLPVSRSELHDLLSKPS------LNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 94 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
|+|+.+. .++.....+...+..... ..++|+++|+||+|+.......+.. ..........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999987 456665555555543322 1479999999999997653323221 111112234469999
Q ss_pred eeCCCCCHHHHHHHHHHH
Q 029978 162 SCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~ 179 (184)
||+++.|++++++.+...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998765
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=142.73 Aligned_cols=134 Identities=20% Similarity=0.229 Sum_probs=91.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcc-----cchHhHHHhccCCCEEEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP-----RFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~~~i~v~ 95 (184)
||+++|++|+|||||++++.+..+. +.+|.+ .+... .+|||||+. .+.... ..++.+|++++|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-----~~~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~ 70 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-----VEYND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQ 70 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-----EEEcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEe
Confidence 7999999999999999999876542 233332 22222 689999973 223332 3478999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|++++.++... . +.... ..|+++|+||+|+.+.. ..++..+..... ...+++++||++|.|++++++
T Consensus 71 d~~~~~s~~~~-~-~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 71 SATDPESRFPP-G-FASIF------VKPVIGLVTKIDLAEADVDIERAKELLETA----GAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred cCCCCCcCCCh-h-HHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCCcEEEEecCCCCCHHHHHH
Confidence 99999887652 2 22221 24999999999986532 222222211110 122689999999999999999
Q ss_pred HHH
Q 029978 175 WLV 177 (184)
Q Consensus 175 ~i~ 177 (184)
.+.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=145.60 Aligned_cols=146 Identities=25% Similarity=0.330 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHc--CCCCCCC----------------CCCccceeeEEeeCCEEEEEEeCCCcccchHhH
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT--GGYSEDM----------------IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 81 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~--~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 81 (184)
.+|+++|.+++|||||++++++ +.+.... ..|.......+......+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999996 4443332 112222333466778899999999999999999
Q ss_pred HHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcC-CCC-cCCCce
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMG-LKS-ITDREV 156 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~-~~~-~~~~~~ 156 (184)
..+++.+|++++|+|+++.. ......++..... .++|+++|+||+|+..... .+++.+.+. ... .....+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998742 2222333333322 4689999999999965322 122222211 111 122355
Q ss_pred eEEEeeeCCCCCHH
Q 029978 157 CCYMISCKNSTNID 170 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~ 170 (184)
+++++||++|.|+.
T Consensus 158 ~iv~~Sa~~g~~~~ 171 (194)
T cd01891 158 PVLYASAKNGWASL 171 (194)
T ss_pred CEEEeehhcccccc
Confidence 79999999997763
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-24 Score=136.97 Aligned_cols=171 Identities=33% Similarity=0.605 Sum_probs=150.1
Q ss_pred HhhccC-CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 12 RSLFFK-QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 12 ~~~~~~-~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
+.++.. .+.++.++|-.|+||||++.++.-++. ....||+++....+..++.++++||..|+...+..|+-|+...++
T Consensus 10 ~~L~g~e~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~a 88 (182)
T KOG0072|consen 10 KALQGPEREMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDA 88 (182)
T ss_pred HHhcCCccceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccce
Confidence 444554 789999999999999999998864433 345678888888888899999999999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+|.++.+.+.-....+..+++........++++.||.|........|+...+++...+++.+.++++||..|.|++
T Consensus 89 vIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 89 VIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 99999999999888777777888877777788899999999999888889999999998888888999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 029978 171 TVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
+.++|+.+-+++.
T Consensus 169 ~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 169 PAMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988764
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-23 Score=155.40 Aligned_cols=151 Identities=23% Similarity=0.300 Sum_probs=107.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEee-CCEEEEEEeCCCccc---------chHhHHHhc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR---------FRSMWERYC 85 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~---------~~~~~~~~~ 85 (184)
..++|+++|.+|+|||||+|++++..+. ..+.+|.......+.. ....+.+|||+|..+ +... ...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~t-le~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRAT-LEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHH-HHHH
Confidence 3489999999999999999999987643 3345666665555554 456899999999721 2221 2246
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
..+|++++|+|++++.+......+ ..++......++|+++|+||+|+.+. +++..... ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~-~~~L~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAV-EKVLEELGAEDIPQLLVYNKIDLLDE---PRIERLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHH-HHHHHHhccCCCCEEEEEEeecCCCh---HhHHHHHh------CCCCEEEEEccC
Confidence 789999999999998776655433 33333333357899999999999654 22221111 113589999999
Q ss_pred CCCHHHHHHHHHHH
Q 029978 166 STNIDTVIDWLVKH 179 (184)
Q Consensus 166 ~~~v~~l~~~i~~~ 179 (184)
|.|++++++.|.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998765
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=160.99 Aligned_cols=147 Identities=18% Similarity=0.218 Sum_probs=108.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHh--------HHHhc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM--------WERYC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 85 (184)
+.+++|+++|.+|+|||||++++++... ...+..|.......+...+..+.+|||||...+... ....+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 5679999999999999999999997653 223334444444556667788999999998654321 23457
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+.+|++++|+|++++.++.... .+.. ..+.|+++|+||+|+.+..... .....+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~-~l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDE-ILEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHH-HHHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 8899999999999887665432 2222 2578999999999997542211 11234689999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 029978 166 STNIDTVIDWLVKHSK 181 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~ 181 (184)
|.|++++++++.+.+.
T Consensus 355 g~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 355 GEGIDELREAIKELAF 370 (449)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998765
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=144.31 Aligned_cols=158 Identities=25% Similarity=0.289 Sum_probs=112.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC--------------------CCCCCCccceeeEEe--eCCEEEEEEeCCCcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS--------------------EDMIPTVGFNMRKVT--KGNVTIKLWDLGGQP 75 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~--------------------~~~~~t~~~~~~~~~--~~~~~~~~~D~~g~~ 75 (184)
+-.+|+++|+.++|||||+++|+...-. .....|.......+. .....+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4578999999999999999999843211 113345555566666 788999999999999
Q ss_pred cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC-----CCC
Q 029978 76 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG-----LKS 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~-----~~~ 150 (184)
++.......+..+|++++|+|+.+.-. .........+.. .++|+++|+||+|+... ..++..+++. ...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~--~~~~~~l~~~~~---~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQ--PQTEEHLKILRE---LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBST--HHHHHHHHHHHH---TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeecccccc--cccccccccccc---cccceEEeeeeccchhh-hHHHHHHHHHHHhccccc
Confidence 999888888999999999999986532 222222222222 47899999999999832 2222222221 111
Q ss_pred cCC-CceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 151 ITD-REVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 151 ~~~-~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
... ..++++++||++|.|+++|++.+.+++.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 122 4678999999999999999999998874
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=145.49 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC----CCC-----CCCCCCccceeeEEee--------------CCEEEEEEeCCCccc
Q 029978 20 MELSLIGLQNAGKTSLVNVIATG----GYS-----EDMIPTVGFNMRKVTK--------------GNVTIKLWDLGGQPR 76 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~----~~~-----~~~~~t~~~~~~~~~~--------------~~~~~~~~D~~g~~~ 76 (184)
++|+++|++++|||||++++... .+. .....|.+.....+.. ....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 57999999999999999999862 111 1123344433332222 267899999999977
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh----HHHHHcCCC--C
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE----DLMEQMGLK--S 150 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~----~~~~~~~~~--~ 150 (184)
+........+.+|++++|+|+++.........+ . +... .+.|+++|+||+|+......+ +..+.++.. .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~-~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECL-V-IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHH-H-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 655555556778999999999875433332211 1 1221 257999999999997533222 222211100 0
Q ss_pred cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 151 ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
......+++++||++|.|+++|++++.+.+.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1123457999999999999999999987654
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-23 Score=159.45 Aligned_cols=159 Identities=19% Similarity=0.154 Sum_probs=109.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchH-----------hHHHh
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS-----------MWERY 84 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~~ 84 (184)
.++|+++|.+|+|||||++++++... ......|.......+...+..+.+|||||..+... .....
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~ 251 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKA 251 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999997653 22233343333344455566899999999654321 12346
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc-CcCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP-EALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++.+|++++|+|+++..+.+... .+..+.. .+.|+++|+||+|+. +....++..+.+.........++++++||
T Consensus 252 ~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA 326 (429)
T TIGR03594 252 IERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISA 326 (429)
T ss_pred HHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeC
Confidence 78899999999999866554432 2222222 468999999999997 32223344444433222334568999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 029978 164 KNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~~ 182 (184)
++|.|++++++.+.+...+
T Consensus 327 ~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 327 LTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887653
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-26 Score=150.69 Aligned_cols=159 Identities=23% Similarity=0.355 Sum_probs=132.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+|++|+|..++||||++++++.+.|..++..|++.++.. +...+.++.+|||+|++.+......+++++++.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 346999999999999999999999999999999999977653 5556678899999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+||+-+++.+|.....|...+.... .++|.++|-||+|+.+.. ...++...... ....++.+|++...||.
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~-----l~~RlyRtSvked~NV~ 170 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKK-----LHKRLYRTSVKEDFNVM 170 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHH-----hhhhhhhhhhhhhhhhH
Confidence 9999999999999999998886543 489999999999997653 22233222221 12247889999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
.+|.++...+.+
T Consensus 171 ~vF~YLaeK~~q 182 (246)
T KOG4252|consen 171 HVFAYLAEKLTQ 182 (246)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=133.74 Aligned_cols=176 Identities=28% Similarity=0.516 Sum_probs=153.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeC-CEEEEEEeCCCcccchHhHH
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~ 82 (184)
|+.++.-.++.. .++++++++|-.++||||++..+. ++.+....||.++....+... .+++++||.+|+...+..|.
T Consensus 3 l~til~~~ks~t-~rEirilllGldnAGKTT~LKqL~-sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWs 80 (185)
T KOG0074|consen 3 LETILCCCKSRT-RREIRILLLGLDNAGKTTFLKQLK-SEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWS 80 (185)
T ss_pred HHHHHHHhcCCC-cceEEEEEEecCCCcchhHHHHHc-cCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhh
Confidence 555555554443 788999999999999999999885 566777889999988887654 49999999999999999999
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEee
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.|+...|.+|+|+|.++...|.++-..+.+++...+...+|+.+..||.|+.-....+++...+.+.....+.+++-+||
T Consensus 81 NYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~cs 160 (185)
T KOG0074|consen 81 NYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECS 160 (185)
T ss_pred hhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCc
Confidence 99999999999999999988998888888998888888999999999999988778899999998888888888999999
Q ss_pred eCCCCCHHHHHHHHHHHhh
Q 029978 163 CKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~ 181 (184)
|.++.|+.+-.+++.+..+
T Consensus 161 als~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 161 ALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred cccccCccCcchhhhcCCC
Confidence 9999999999988876544
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-24 Score=147.40 Aligned_cols=135 Identities=22% Similarity=0.400 Sum_probs=106.6
Q ss_pred CCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCC
Q 029978 42 GGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP 117 (184)
Q Consensus 42 ~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 117 (184)
+.|...+.+|++..+.. ++...+.+.+|||+|++++...+..+++.+|++++|||++++++|..+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 46778888999866642 33456899999999999999999999999999999999999999999988888776543
Q ss_pred CCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 118 SLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 118 ~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
. .+.|+++|+||+|+.... ..++...... .....+++|||++|.||+++|++|.+.+.+
T Consensus 83 ~-~~~piilVgNK~DL~~~~~v~~~e~~~~~~-----~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 G-KDVIIALVGNKTDLGDLRKVTYEEGMQKAQ-----EYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred C-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2 578999999999996432 2233322211 123468999999999999999999988764
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=156.60 Aligned_cols=153 Identities=22% Similarity=0.240 Sum_probs=107.3
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCCC--CCC-CCCCccceeeEEeeCCEEEEEEeCCCcccchH--------hHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGY--SED-MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS--------MWE 82 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~~--~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~ 82 (184)
...+.+++|+++|++|+|||||++++++... ... +..|.......+...+..+.+|||||...... ...
T Consensus 198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 3446789999999999999999999997643 222 22233333344556678899999999855432 123
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEee
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.+++.+|++++|+|++++.++... ++..+. ..++|+++|+||+|+... ..++..+. ...+++++|
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV~NK~Dl~~~-~~~~~~~~--------~~~~~~~vS 342 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILVLNKIDLKIN-SLEFFVSS--------KVLNSSNLS 342 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEEEECccCCCc-chhhhhhh--------cCCceEEEE
Confidence 567899999999999988776553 444332 246899999999999643 22222111 123588999
Q ss_pred eCCCCCHHHHHHHHHHHhhh
Q 029978 163 CKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~ 182 (184)
|++ .||+++++.+.+.+.+
T Consensus 343 ak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 343 AKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred Eec-CCHHHHHHHHHHHHHH
Confidence 998 6999999988887653
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-23 Score=154.02 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=110.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCC-EEEEEEeCCCccc-------chHhHHHhccCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPR-------FRSMWERYCRAVS 89 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~~ 89 (184)
..|+++|.++||||||++++.+.... ..+.+|.......+...+ ..+.+||+||... ........+..++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 56899999999999999999975432 222345444444455444 7899999999642 1223334456799
Q ss_pred EEEEEEeCCCC---CChHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 90 AIVYVVDAADY---DNLPVSRSELHDLLSKP-SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 90 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++++|+|+++. +++.....+..++.... ...+.|+++|+||+|+.+....++..+.+... ...+++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~----~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKA----LGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHH----cCCcEEEEEccC
Confidence 99999999986 56666666666554432 22578999999999997653333333333211 124699999999
Q ss_pred CCCHHHHHHHHHHHh
Q 029978 166 STNIDTVIDWLVKHS 180 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~ 180 (184)
+.|++++++.+.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998865
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=147.03 Aligned_cols=160 Identities=17% Similarity=0.163 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---C--CCCCCCccceeeEEee---------------------------------
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY---S--EDMIPTVGFNMRKVTK--------------------------------- 61 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~---~--~~~~~t~~~~~~~~~~--------------------------------- 61 (184)
++|+++|+.|+|||||+..+.+-.. + .....|....+....+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4789999999999999999974311 1 1111122211111111
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 141 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 141 (184)
....+.+|||||++.+.......+..+|++++|+|++++.........+..+... ...|+++|+||+|+.......+
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 1268999999999998888888888999999999998742111212222222111 1247999999999975322222
Q ss_pred HHHHcCC--CCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 142 LMEQMGL--KSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 142 ~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
..+.+.. ........+++++||++|.|++++++.+.+.+.+
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 2222211 1111234579999999999999999999987754
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=159.92 Aligned_cols=153 Identities=19% Similarity=0.180 Sum_probs=104.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCccc--------chHhHHHhcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCR 86 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 86 (184)
...+|+|+|.+|||||||++++++.... ..+..|...........+..+.+|||||.+. +......+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 3468999999999999999999976532 2222233333344556677899999999762 3334556788
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.+|++++|+|+++..+... ..+..++.. .++|+++|+||+|+..... +..+..... .. ..+++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g----~~-~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSLG----LG-EPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhcC----CC-CeEEEEcCCC
Confidence 9999999999998765432 223333332 4799999999999864321 111111111 11 2468999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.|++++++.+.+.+.+
T Consensus 185 ~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 185 RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcHHHHHHHHhhccc
Confidence 9999999999987753
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=140.12 Aligned_cols=150 Identities=28% Similarity=0.461 Sum_probs=111.6
Q ss_pred EEcCCCCChHHHHHHHHcCCC-CCCCCCCccceeeEEee----CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCC
Q 029978 24 LIGLQNAGKTSLVNVIATGGY-SEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 24 iiG~~g~GKStli~~l~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
++|++|+|||||++++.+... .....+|. ........ ....+.+||+||+..+.......++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 45555555 43333222 3678999999999888877788889999999999999
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHH-HHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHH
Q 029978 99 DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLM-EQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
+..+......++..........++|+++|+||+|+......+... ... .......+++++|++++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQ---LAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHH---HHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 987777776663333334445789999999999997664433321 111 1112345799999999999999999875
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=137.86 Aligned_cols=145 Identities=20% Similarity=0.200 Sum_probs=99.5
Q ss_pred EEEcCCCCChHHHHHHHHcCCC--C-CCCCCCccceeeEEeeCCEEEEEEeCCCcccchH--------hHHHhccCCCEE
Q 029978 23 SLIGLQNAGKTSLVNVIATGGY--S-EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS--------MWERYCRAVSAI 91 (184)
Q Consensus 23 ~iiG~~g~GKStli~~l~~~~~--~-~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~~~ 91 (184)
+++|.+|+|||||++++.+... . .....|...........+..+.+|||||...+.. .....++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4799999999999999997642 1 2222233344444556678899999999876433 344567889999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|+|..+..+... ..+..++.. .+.|+++|+||+|+.+.....+....++ ..+++++|++++.|+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLG-------FGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcC-------CCCeEEEecccCCCHHH
Confidence 99999987543332 223333322 3599999999999976532211111111 11478999999999999
Q ss_pred HHHHHHHH
Q 029978 172 VIDWLVKH 179 (184)
Q Consensus 172 l~~~i~~~ 179 (184)
+++++.+.
T Consensus 149 l~~~l~~~ 156 (157)
T cd01894 149 LLDAILEL 156 (157)
T ss_pred HHHHHHhh
Confidence 99999875
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-22 Score=136.60 Aligned_cols=156 Identities=19% Similarity=0.120 Sum_probs=103.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccch-----------HhHHHh
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR-----------SMWERY 84 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-----------~~~~~~ 84 (184)
.++|+++|++|+|||||++++.+.... .....+..............+.+|||||..... ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 578999999999999999999876532 112222222223344455678999999964321 112234
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--CCHhHHHHHcCCCCcCCCceeEEEee
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
++.+|++++|+|+.++.+.... ..+..+.. .+.|+++++||+|+.+. ...++..+.+..........+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 6789999999999987665432 22222221 36899999999999765 23333333333222222345799999
Q ss_pred eCCCCCHHHHHHHHHHH
Q 029978 163 CKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~ 179 (184)
|+++.|++++++.+.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-23 Score=143.49 Aligned_cols=163 Identities=20% Similarity=0.253 Sum_probs=104.7
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEeeCCEEEEEEeCCCcc----------cchHhHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGGQP----------RFRSMWE 82 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g~~----------~~~~~~~ 82 (184)
.+.+...+|+++|++|+|||||++++.+..+.....++.+.... .....+..+.+|||||.. .+.....
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 34455689999999999999999999987655555555442221 111224689999999942 2333344
Q ss_pred HhccC---CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEE
Q 029978 83 RYCRA---VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCY 159 (184)
Q Consensus 83 ~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+++. .+++++++|.+...... ..+....+.. .++|+++++||+|+.+....++..+.+...... ...+++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~--~~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~-~~~~~~ 172 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKEL--DLQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKF-GDDEVI 172 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHH--HHHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh-cCCceE
Confidence 44443 46788888887644322 2222223222 468999999999997643333322222111111 134689
Q ss_pred EeeeCCCCCHHHHHHHHHHHhhh
Q 029978 160 MISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
++||+++.|++++++.|.+++++
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999988865
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-23 Score=146.98 Aligned_cols=157 Identities=22% Similarity=0.194 Sum_probs=114.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccc--------hHhHHHhcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF--------RSMWERYCR 86 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~ 86 (184)
+.-.|+|+|.||+|||||+|++.+... ++.++.|.......+..++..+.++||||.... .......+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 445689999999999999999998654 566667776666667778899999999995432 223455678
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+|++++|+|++.... ....+..+.+.. .+.|+++++||+|...... .....+.+.... .+..++++||++
T Consensus 85 dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~---~f~~ivpiSA~~ 156 (298)
T COG1159 85 DVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL---PFKEIVPISALK 156 (298)
T ss_pred cCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhC---CcceEEEeeccc
Confidence 9999999999987432 223333333222 4689999999999987644 233333333222 233699999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 029978 166 STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~~ 182 (184)
|.|++.|.+.+..++.+
T Consensus 157 g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 157 GDNVDTLLEIIKEYLPE 173 (298)
T ss_pred cCCHHHHHHHHHHhCCC
Confidence 99999999999998764
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=137.36 Aligned_cols=147 Identities=24% Similarity=0.248 Sum_probs=100.4
Q ss_pred EEcCCCCChHHHHHHHHcCCCCCCC--CCCccceeeEEeeCCEEEEEEeCCCcccchH------hHHHhc--cCCCEEEE
Q 029978 24 LIGLQNAGKTSLVNVIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYC--RAVSAIVY 93 (184)
Q Consensus 24 iiG~~g~GKStli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~~~~i~ 93 (184)
++|.+|+|||||++++.+..+.... ..|.......+...+..+.+|||||+..+.. ....++ ..+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999977544332 2344444444555567899999999876542 344555 48999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|+.+.+... .++..+.. .++|+++|+||+|+.+........+.+.. ....+++++||+++.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSE----LLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHH----hhCCCeEEEEccCCCCHHHHH
Confidence 99998754322 23333322 36899999999999764322211111111 112469999999999999999
Q ss_pred HHHHHHhh
Q 029978 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
+.+.+++.
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988754
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=137.38 Aligned_cols=142 Identities=19% Similarity=0.247 Sum_probs=93.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcc----cchHhHHHhccCCCEEEEEEe
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP----RFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i~v~d 96 (184)
+|+++|.+|+|||||++++.+. +.. ..+|... .+... .+|||||.. ++.......++.+|++++|+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~-~~~-~~~~~~v---~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d 73 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGN-YTL-ARKTQAV---EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHG 73 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCC-Ccc-CccceEE---EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEe
Confidence 7999999999999999998743 211 1122111 11111 269999973 222222344789999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++.+++.. .+...+ ..+.|+++++||+|+.+. ..++..+.+... ....+++++||+++.|++++++.+
T Consensus 74 ~~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 74 ANDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLET---GFEEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred CCCcccccC--HHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHHHHH
Confidence 998776532 233332 135799999999998653 333333322111 112479999999999999999999
Q ss_pred HHHhhh
Q 029978 177 VKHSKS 182 (184)
Q Consensus 177 ~~~~~~ 182 (184)
.+.+.+
T Consensus 143 ~~~~~~ 148 (158)
T PRK15467 143 ASLTKQ 148 (158)
T ss_pred HHhchh
Confidence 988753
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=155.63 Aligned_cols=160 Identities=22% Similarity=0.249 Sum_probs=109.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCCEEEEEEeCCCcccc-------hHhHHHhccCCC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVS 89 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~~ 89 (184)
-..|+|+|.||||||||++++.+.... ..+.+|.......+...+..+.+||+||.... .......+..++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 367999999999999999999865432 23455666666667777789999999995321 122334567799
Q ss_pred EEEEEEeCCCC----CChHHHHHHHHHHhcCC----------CCCCCcEEEEeeCCCccCcCCHhHH-HHHcCCCCcCCC
Q 029978 90 AIVYVVDAADY----DNLPVSRSELHDLLSKP----------SLNGIPLLVLGNKIDKPEALSKEDL-MEQMGLKSITDR 154 (184)
Q Consensus 90 ~~i~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~piilv~nK~D~~~~~~~~~~-~~~~~~~~~~~~ 154 (184)
++++|+|+++. +.+.....+..++..+. ...+.|+++|+||+|+.+.....+. .+.+. ..
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~-----~~ 313 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE-----AR 313 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH-----Hc
Confidence 99999999753 34444443333443322 2357899999999999754222221 11211 12
Q ss_pred ceeEEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 155 EVCCYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
.++++++||+++.|+++|++++.+.+...
T Consensus 314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 314 GWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 34799999999999999999999887653
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.3e-22 Score=151.06 Aligned_cols=155 Identities=22% Similarity=0.276 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeC-CEEEEEEeCCCccc----c---hHhHHHhccCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPR----F---RSMWERYCRAVS 89 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~----~---~~~~~~~~~~~~ 89 (184)
..|+++|.|+||||||++++++.... ..+..|.......+... ...+.+||+||... . .......+..++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 37999999999999999999965432 22344544444444444 57899999999632 1 122334456799
Q ss_pred EEEEEEeCCCC---CChHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 90 AIVYVVDAADY---DNLPVSRSELHDLLSKP-SLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 90 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++++|+|+++. +++.....+..++..+. ...++|+++|+||+|+..... .+++.+.+. .+++++||+
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~ 310 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISAL 310 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCC
Confidence 99999999864 56666655555554432 225789999999999843311 112222222 368999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 029978 165 NSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~~ 182 (184)
++.|++++++++.+.+.+
T Consensus 311 tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 311 TGQGLDELLYAVAELLEE 328 (424)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=157.13 Aligned_cols=153 Identities=22% Similarity=0.286 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC-------CCCCCCC----------CccceeeEEe-----eCCEEEEEEeCCCcccc
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGG-------YSEDMIP----------TVGFNMRKVT-----KGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~-------~~~~~~~----------t~~~~~~~~~-----~~~~~~~~~D~~g~~~~ 77 (184)
-+++++|+.++|||||+++++... +...+.+ |+......+. ...+.+++|||||+.++
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 478999999999999999998532 2222222 2222222222 23488999999999999
Q ss_pred hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH---hHHHHHcCCCCcCCC
Q 029978 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---EDLMEQMGLKSITDR 154 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~ 154 (184)
...+..+++.+|++++|+|+++....+....++... . .++|+++|+||+|+...... +++.+.++..
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~----- 153 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD----- 153 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC-----
Confidence 999999999999999999999876666555444332 2 36899999999998653211 2232332221
Q ss_pred ceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 155 EVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
..+++++||++|.|++++++.|.+.+..
T Consensus 154 ~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 154 ASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 1248999999999999999999987653
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=134.42 Aligned_cols=142 Identities=27% Similarity=0.355 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCCEEEEEEeCCCcccc------hHhHHHhc--cCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF------RSMWERYC--RAVS 89 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~--~~~~ 89 (184)
++|+++|.||+|||||+|++++.... .-++.|+......+...+..+.++|+||.... ......++ ...|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 58999999999999999999987643 33455666666667778899999999994322 22233333 6899
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC----CHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++++|+|+++.+ .......++.. .++|+++|+||+|..... +.+.+.+.++. |++++||++
T Consensus 81 ~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~--------pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV--------PVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS---------EEEEBTTT
T ss_pred EEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC--------CEEEEEeCC
Confidence 999999998632 22222233332 479999999999987643 34566666553 699999999
Q ss_pred CCCHHHHHHHH
Q 029978 166 STNIDTVIDWL 176 (184)
Q Consensus 166 ~~~v~~l~~~i 176 (184)
+.|+++|++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-22 Score=146.41 Aligned_cols=156 Identities=21% Similarity=0.197 Sum_probs=104.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccch--------HhHHHhcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR--------SMWERYCR 86 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~ 86 (184)
+.-.|+++|++|||||||+|++++.... ..+..|..........++..+.++||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 3456899999999999999999976542 222223222222233455789999999964322 23344568
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc-CCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA-LSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+|++++|+|+++. +.....+....+.. .+.|+++|+||+|+... ....+..+.+... ....+++++||++
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCC
Confidence 89999999999872 23333333333332 46899999999999732 2222333333221 1245699999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 029978 166 STNIDTVIDWLVKHSK 181 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~ 181 (184)
+.|++++++.+.+.+.
T Consensus 156 ~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 156 GDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCHHHHHHHHHHhCC
Confidence 9999999999998764
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=160.32 Aligned_cols=159 Identities=16% Similarity=0.092 Sum_probs=110.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCccc----------chHh-HHHh
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR----------FRSM-WERY 84 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~-~~~~ 84 (184)
..+|+++|.+|||||||++++++... ......|.......+...+..+.+|||||..+ +... ....
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~ 529 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAA 529 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHH
Confidence 48999999999999999999998763 22233344433334445566788999999532 1111 1234
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++.+|++++|+|+++..+.+... .+..+.. .++|+++|+||+|+.+....+...+.+..........+++++||+
T Consensus 530 i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAk 604 (712)
T PRK09518 530 IERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAK 604 (712)
T ss_pred hhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence 68899999999999887766543 3333322 468999999999997643333333333322222234578999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 029978 165 NSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~~ 182 (184)
+|.|++++++.+.+...+
T Consensus 605 tg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 605 TGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988764
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-22 Score=158.64 Aligned_cols=156 Identities=24% Similarity=0.320 Sum_probs=109.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEeeCCE-EEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNV-TIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+..+|+++|++++|||||++++.+..+.....+ |.......+...+. .+.+|||||++.|..++.+.+..+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4568899999999999999999998776554332 33333333444333 89999999999999988888999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHc---CCCC-cCCCceeEEEeeeCCCCCH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM---GLKS-ITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~Sa~~~~~v 169 (184)
|+|+++...-+.. ..+. .....++|+++++||+|+... ..+++.+.+ +... ......+++++||++|.|+
T Consensus 165 VVda~dgv~~qT~-e~i~----~~~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVMPQTI-EAIS----HAKAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCCHhHH-HHHH----HHHHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 9999864322221 1122 122257899999999999653 233333332 2111 1122357999999999999
Q ss_pred HHHHHHHHH
Q 029978 170 DTVIDWLVK 178 (184)
Q Consensus 170 ~~l~~~i~~ 178 (184)
+++++.+..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999864
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=137.33 Aligned_cols=157 Identities=27% Similarity=0.369 Sum_probs=111.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEe----eCCEEEEEEeCCCcccchHhHHHhccCC-CEEEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAV-SAIVYVV 95 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~-~~~i~v~ 95 (184)
+|+++|++|||||||+++|..+.+...+.++.. ...... .....+.+||+||+++++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~-~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEP-NVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEee-cceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999998877665544322 222221 2357899999999999998888889998 9999999
Q ss_pred eCCCC-CChHHHHHHHHHHhcC--CCCCCCcEEEEeeCCCccCcCCHhHHHHHcC-------------C-----------
Q 029978 96 DAADY-DNLPVSRSELHDLLSK--PSLNGIPLLVLGNKIDKPEALSKEDLMEQMG-------------L----------- 148 (184)
Q Consensus 96 d~~~~-~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~~~~~~~~~-------------~----------- 148 (184)
|+.+. .++.....++..++.. ....++|+++|+||+|+......+.+.+.+. +
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~ 160 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE 160 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99987 5666666666555432 1225899999999999876543222211110 0
Q ss_pred ----------CCc-CCCceeEEEeeeCCCC-CHHHHHHHHHH
Q 029978 149 ----------KSI-TDREVCCYMISCKNST-NIDTVIDWLVK 178 (184)
Q Consensus 149 ----------~~~-~~~~~~~~~~Sa~~~~-~v~~l~~~i~~ 178 (184)
... ....+.+.++|++.+. |++.+.++|.+
T Consensus 161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 000 0125678899999876 69999988864
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=151.98 Aligned_cols=149 Identities=21% Similarity=0.253 Sum_probs=105.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCc--------ccchHhHHHhccCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ--------PRFRSMWERYCRAVS 89 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~~~ 89 (184)
+|+++|.+|||||||++++.+.... ..+..|...........+..+.+|||||. +.+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 4899999999999999999976531 22333444455556677788999999996 334455666788999
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++++|+|+.+... .....+..+++. .++|+++|+||+|+............++ ..+++++||++|.|+
T Consensus 81 ~vl~vvD~~~~~~--~~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg-------~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLT--PEDEEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLG-------FGEPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCC--HHHHHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcC-------CCCeEEEeCCcCCCh
Confidence 9999999987433 222233333332 4689999999999875432111111222 124899999999999
Q ss_pred HHHHHHHHHHhh
Q 029978 170 DTVIDWLVKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~~~ 181 (184)
+++++.+.+.+.
T Consensus 149 ~~ll~~i~~~l~ 160 (429)
T TIGR03594 149 GDLLDAILELLP 160 (429)
T ss_pred HHHHHHHHHhcC
Confidence 999999998764
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=151.82 Aligned_cols=148 Identities=22% Similarity=0.254 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCccc--------chHhHHHhccCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCRAV 88 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~ 88 (184)
.+|+++|.+|||||||++++.+... ...+..|...........+..+.+|||||.+. +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 4799999999999999999997653 22233344444455566678999999999876 233345567899
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|+.+..+. .......++.. .+.|+++|+||+|+.+.. +...+...+. ...++++||++|.|
T Consensus 82 d~il~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~lg-----~~~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLTP--ADEEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYSLG-----LGEPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCCH--HHHHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHhcC-----CCCCEEEEeeCCCC
Confidence 999999999874332 22222333322 368999999999975421 2222221111 11378999999999
Q ss_pred HHHHHHHHHHH
Q 029978 169 IDTVIDWLVKH 179 (184)
Q Consensus 169 v~~l~~~i~~~ 179 (184)
++++++.+.+.
T Consensus 150 v~~l~~~I~~~ 160 (435)
T PRK00093 150 IGDLLDAILEE 160 (435)
T ss_pred HHHHHHHHHhh
Confidence 99999999873
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=132.78 Aligned_cols=153 Identities=22% Similarity=0.204 Sum_probs=102.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCC---CCCCccceeeEEeeCCEEEEEEeCCCcccch--------HhHHHhccC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR--------SMWERYCRA 87 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~~ 87 (184)
..+|+++|++|+|||||++++.+...... ...+..............+.+|||||..... ......+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999987653211 1112212222344556789999999965432 233455788
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC-cCCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE-ALSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+|++++|+|++++. .....++...... .+.|+++|+||+|+.. .....+..+.+... ....+++++|++++
T Consensus 83 ~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~ 154 (168)
T cd04163 83 VDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALKG 154 (168)
T ss_pred CCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEeccC
Confidence 99999999999862 2222233232222 2689999999999973 32333333333222 22346899999999
Q ss_pred CCHHHHHHHHHHH
Q 029978 167 TNIDTVIDWLVKH 179 (184)
Q Consensus 167 ~~v~~l~~~i~~~ 179 (184)
.|++++++.|.+.
T Consensus 155 ~~~~~l~~~l~~~ 167 (168)
T cd04163 155 ENVDELLEEIVKY 167 (168)
T ss_pred CChHHHHHHHHhh
Confidence 9999999999765
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=151.69 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=108.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCC-C--CCCCCCccceeeEEeeCCEEEEEEeCCCcccch-----------HhHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGY-S--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR-----------SMWER 83 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-----------~~~~~ 83 (184)
..++|+++|.+|+|||||++++++... . .....|.......+...+..+.+|||||..+.. .....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 469999999999999999999996542 1 222223322223344566789999999964321 11234
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
.++.+|++++|+|+++..+.+.. ..+..+.. .+.|+++|+||+|+.+....++..+.+.........++++++||
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDL-RIAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 57889999999999987655443 22222222 46899999999999754333444444433222334568999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
++|.|++++++.+.+...
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887654
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-21 Score=148.13 Aligned_cols=154 Identities=22% Similarity=0.273 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCC-EEEEEEeCCCcccc--hHhH------HHhccCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRF--RSMW------ERYCRAV 88 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~--~~~~------~~~~~~~ 88 (184)
.+|+++|.+|+|||||+|++++.... ..+..|.......+...+ ..+.+|||+|..+. ...+ ....+.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 58999999999999999999976543 234455555554554444 37889999997431 2222 2336789
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|++++.++.....+ ..++......++|+++|+||+|+.+... ... ..... ....++++||++|.|
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v-~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~-~~~~~-----~~~~~v~ISAktG~G 349 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAV-NTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRI-DRDEE-----NKPIRVWLSAQTGAG 349 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHH-HHHHHHhccCCCCEEEEEEcccCCCchh-HHH-HHHhc-----CCCceEEEeCCCCCC
Confidence 999999999998766665332 2222222335789999999999964311 111 11100 011258899999999
Q ss_pred HHHHHHHHHHHhh
Q 029978 169 IDTVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~~~ 181 (184)
++++++.|.+.+.
T Consensus 350 IdeL~e~I~~~l~ 362 (426)
T PRK11058 350 IPLLFQALTERLS 362 (426)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998874
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-22 Score=136.98 Aligned_cols=150 Identities=21% Similarity=0.278 Sum_probs=95.2
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eEEeeCCEEEEEEeCCCcc----------cchH
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQP----------RFRS 79 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~----------~~~~ 79 (184)
..++..+..+|+++|++|+|||||++++.+..+.....++.+... ..+... -.+.+|||||.. .+..
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHH
Confidence 345567789999999999999999999998764444444433221 112222 268999999942 2233
Q ss_pred hHHHhcc---CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH----hHHHHHcCCCCcC
Q 029978 80 MWERYCR---AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK----EDLMEQMGLKSIT 152 (184)
Q Consensus 80 ~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~~~~~~ 152 (184)
....+++ .++++++|+|+++.-+.... .+..++.. .++|+++|+||+|+...... +++.+.++..
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~--- 161 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD--- 161 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---
Confidence 3334444 35799999999875433332 22233322 46899999999999754322 2232333221
Q ss_pred CCceeEEEeeeCCCCCHH
Q 029978 153 DREVCCYMISCKNSTNID 170 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~ 170 (184)
....+++++||++|.|++
T Consensus 162 ~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCceEEEECCCCCCCC
Confidence 123469999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=131.94 Aligned_cols=152 Identities=24% Similarity=0.206 Sum_probs=103.9
Q ss_pred EEcCCCCChHHHHHHHHcCCCC-CCCC--CCccceeeEEeeC-CEEEEEEeCCCcccch-------HhHHHhccCCCEEE
Q 029978 24 LIGLQNAGKTSLVNVIATGGYS-EDMI--PTVGFNMRKVTKG-NVTIKLWDLGGQPRFR-------SMWERYCRAVSAIV 92 (184)
Q Consensus 24 iiG~~g~GKStli~~l~~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~-------~~~~~~~~~~~~~i 92 (184)
++|++|+|||||++++.+.... .... .+........... ...+.+||+||..... ......++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999875443 1111 1222222222322 5689999999976543 34455778999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+++|..+........ +.... ...+.|+++|+||+|+.......+..+...........++++++||+++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999877655543 12222 2257999999999999876544443321222233345668999999999999999
Q ss_pred HHHHHHHh
Q 029978 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
++.+.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=159.28 Aligned_cols=158 Identities=23% Similarity=0.321 Sum_probs=111.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+...|+++|+.++|||||+++|.+..+.....+ |.......+...+..+.+|||||++.|..++.+.++.+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 35668899999999999999999987665433222 3333334455567889999999999999999888999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHc---CCC-CcCCCceeEEEeeeCCCCCH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM---GLK-SITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~Sa~~~~~v 169 (184)
|+|+++...-+. ...+. .....++|+|+|+||+|+... +.+++...+ +.. ......++++++||++|.|+
T Consensus 367 VVdAddGv~~qT-~e~i~----~a~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVMPQT-IEAIN----HAKAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCCHhH-HHHHH----HHHhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999987432111 11122 222357999999999999653 223333322 111 11122468999999999999
Q ss_pred HHHHHHHHHH
Q 029978 170 DTVIDWLVKH 179 (184)
Q Consensus 170 ~~l~~~i~~~ 179 (184)
+++++.|...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998753
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=146.42 Aligned_cols=149 Identities=20% Similarity=0.214 Sum_probs=112.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccc---------hHhHHHhccC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF---------RSMWERYCRA 87 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~ 87 (184)
..|+|+|.||||||||.|+|++... ...++-|....+....+.+..+.++||+|-+.. ..+....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 5699999999999999999997654 456677777888888888889999999995521 2345556789
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
||+++||+|... ......+....++.. .++|+++|+||+|....+........+++. ..+++||.+|.
T Consensus 84 ADvilfvVD~~~--Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~~~~efyslG~g-------~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGRE--GITPADEEIAKILRR---SKKPVILVVNKIDNLKAEELAYEFYSLGFG-------EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCC--CCCHHHHHHHHHHHh---cCCCEEEEEEcccCchhhhhHHHHHhcCCC-------CceEeehhhcc
Confidence 999999999976 334444455555443 569999999999987442222222233333 48999999999
Q ss_pred CHHHHHHHHHHHh
Q 029978 168 NIDTVIDWLVKHS 180 (184)
Q Consensus 168 ~v~~l~~~i~~~~ 180 (184)
|+.+|++.+++.+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999986
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=155.91 Aligned_cols=158 Identities=20% Similarity=0.177 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC---CCCCCC--CCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATG---GYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~---~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.|+++|++++|||||+++|.+. .++.+. ..|+...+..+...+..+.+||+||+++|.......+..+|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 46899999999999999999852 333332 3344444445566668999999999999988888888999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCCHhHHHHHcCC---CCcCCCceeEEEeeeCCCCCHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALSKEDLMEQMGL---KSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+++... ......+ .++.. .++| +++|+||+|+.+....++..+++.. .......++++++||++|.|++
T Consensus 81 VDa~~G~~-~qT~ehl-~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 81 VDADEGVM-TQTGEHL-AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EECCCCCc-HHHHHHH-HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 99987421 1111222 22222 3577 9999999999764322222221110 0001124679999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++.+.+.+..
T Consensus 156 eL~~~L~~l~~~ 167 (581)
T TIGR00475 156 ELKKELKNLLES 167 (581)
T ss_pred hHHHHHHHHHHh
Confidence 999998877653
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-21 Score=145.65 Aligned_cols=160 Identities=18% Similarity=0.202 Sum_probs=108.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEeeCC-EEEEEEeCCCcccc-------hHhHHHhccCCCE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRF-------RSMWERYCRAVSA 90 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~~~ 90 (184)
.|+|+|.||||||||++++++... ...+..|.......+...+ ..+.++||||.... .......+..+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 689999999999999999996543 2334455555555555554 46999999996431 1222345788999
Q ss_pred EEEEEeCC---CCCChHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 91 IVYVVDAA---DYDNLPVSRSELHDLLSKP-SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 91 ~i~v~d~~---~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+++|+|++ ..+.+.....+..++.... ...+.|+++|+||+|+.......+..+.+... .....+++++||+++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAASG 318 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCCC
Confidence 99999998 4455555555555554431 12468999999999997543333333222111 011125899999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.|++++++.|.+.+.+
T Consensus 319 ~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 319 LGVKELCWDLMTFIEE 334 (390)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999988754
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-21 Score=134.02 Aligned_cols=156 Identities=18% Similarity=0.106 Sum_probs=102.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCC------------------CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHh
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGY------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
.++|+++|+.++|||||+++|+.... +.....|.......++..+..+.++||||+.++...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999984310 012222333333445566788999999999998888
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCCH-h----HHHHHcCCCCcCCC
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALSK-E----DLMEQMGLKSITDR 154 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 154 (184)
....+..+|++++|+|+...- .........++.. .++| +|+|+||+|+...... + ++.+.+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~--~~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGP--MPQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 888889999999999997632 2222222222222 3566 7899999999643221 1 12222211111223
Q ss_pred ceeEEEeeeCCCCCH----------HHHHHHHHHH
Q 029978 155 EVCCYMISCKNSTNI----------DTVIDWLVKH 179 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v----------~~l~~~i~~~ 179 (184)
.++++++||++|.|+ ..|++.|.+.
T Consensus 157 ~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~ 191 (195)
T cd01884 157 NTPIVRGSALKALEGDDPNKWVKKILELLDALDSY 191 (195)
T ss_pred CCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhC
Confidence 578999999999984 4666666544
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-21 Score=155.40 Aligned_cols=152 Identities=24% Similarity=0.224 Sum_probs=103.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCccc--------chHhHHHhccC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCRA 87 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~ 87 (184)
..+|+|+|.+|||||||++++++... ...++.|...........+..+.+|||||.+. +......+++.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 36799999999999999999997543 12222233333334456678899999999653 23445567889
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|+++. +......+...+.. .++|+++|+||+|+..... ...+...+.. . ..+++||++|.
T Consensus 355 aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg~----~-~~~~iSA~~g~ 422 (712)
T PRK09518 355 ADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLGL----G-EPYPISAMHGR 422 (712)
T ss_pred CCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcCC----C-CeEEEECCCCC
Confidence 9999999999763 33333334443332 5799999999999865321 1122211111 1 25789999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
||+++++.+.+.+.+
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999987643
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-22 Score=130.86 Aligned_cols=110 Identities=26% Similarity=0.507 Sum_probs=78.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC--CCCCC----CccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS--EDMIP----TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~--~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
||+++|++|||||||++++.+..+. ..+.+ +..............+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7899999999999999999987776 11112 22222223333334599999999988877767778999999999
Q ss_pred EeCCCCCChHHHHHH---HHHHhcCCCCCCCcEEEEeeCCC
Q 029978 95 VDAADYDNLPVSRSE---LHDLLSKPSLNGIPLLVLGNKID 132 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~piilv~nK~D 132 (184)
||+++++++..+..+ +..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999888887544 4444332 24699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=152.71 Aligned_cols=159 Identities=21% Similarity=0.263 Sum_probs=111.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCC--CCccceeeE--Ee--eCCEEEEEEeCCCcccchHhHHHhccCCC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMI--PTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVS 89 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~--~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (184)
..+...|+++|++++|||||++++....+..... .|....... .. .....+.+|||||++.|..++.+.+..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3456789999999999999999998766543322 222222222 22 24589999999999999999999999999
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCC----CcCCCceeEEEeeeCC
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK----SITDREVCCYMISCKN 165 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~ 165 (184)
++++|+|+++....+.. ..+..+ ...++|+|+|+||+|+.... .+++.+.+... ......++++++||++
T Consensus 321 iaILVVDA~dGv~~QT~-E~I~~~----k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 321 IAILIIAADDGVKPQTI-EAINYI----QAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEEECcCCCChhhH-HHHHHH----HhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 99999999874332222 112222 22578999999999997532 23333332211 1112246899999999
Q ss_pred CCCHHHHHHHHHHHh
Q 029978 166 STNIDTVIDWLVKHS 180 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~ 180 (184)
|.|+++|++.+....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999998754
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=150.42 Aligned_cols=155 Identities=20% Similarity=0.249 Sum_probs=108.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC--CCC-----C----------CCCCCccceeeEE-----eeCCEEEEEEeCCCcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG--GYS-----E----------DMIPTVGFNMRKV-----TKGNVTIKLWDLGGQP 75 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~--~~~-----~----------~~~~t~~~~~~~~-----~~~~~~~~~~D~~g~~ 75 (184)
+-.+++|+|+.++|||||+.+++.. ... . +...|+......+ +...+.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 3458999999999999999999852 111 1 1122332222223 2336899999999999
Q ss_pred cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH---hHHHHHcCCCCcC
Q 029978 76 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---EDLMEQMGLKSIT 152 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~~~~~ 152 (184)
++...+..+++.+|++++|+|+++....+....+.. ... .++|+++|+||+|+...... +++.+.++..
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 157 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID--- 157 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC---
Confidence 999989999999999999999998655554433322 221 46899999999998653221 2232222221
Q ss_pred CCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 153 DREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
...++++||++|.|++++++.|.+.+..
T Consensus 158 --~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 158 --ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred --cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 1248999999999999999999987653
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-21 Score=148.38 Aligned_cols=153 Identities=19% Similarity=0.166 Sum_probs=102.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--C-------------------------------CCCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--Y-------------------------------SEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|++++|||||+++|+... . +.+...|+......++..+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 567999999999999999999998321 0 1123445555556677778
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--H--
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--K-- 139 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~-- 139 (184)
+.+.+|||||++++.......+..+|++++|+|+++..++.....+...+.... ...|+++|+||+|+.+... .
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHH
Confidence 999999999999887666666788999999999987323322222222332221 1246999999999975211 1
Q ss_pred --hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 140 --EDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 140 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+++.+.+.........++++++||++|.|+++
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 12222221111112245799999999999986
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=135.00 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=108.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC--------C------------CCCCCCccceeeEEeeCCEEEEEEeCCCcccchHh
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGY--------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~--------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
+|+++|++|+|||||+++++...- . .....|+......+.+.+.++++|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999984210 0 01112233344556788899999999999999888
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---H------------------
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---K------------------ 139 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~------------------ 139 (184)
+..+++.+|++++|+|+.+.... ....++..+.. .++|+++++||+|+..... .
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 89999999999999999875432 22333333322 4689999999999875310 0
Q ss_pred -----------------------hHHHHHcC---------------CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 140 -----------------------EDLMEQMG---------------LKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 140 -----------------------~~~~~~~~---------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+++++.+- ........+|++..||.++.|++.|++.+.+++.
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 11111111 0111234568888899999999999999998764
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-22 Score=131.79 Aligned_cols=157 Identities=21% Similarity=0.373 Sum_probs=132.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE----eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..++++++|..|.||||++.+.+.++|+..+.+|++...... +.+.+++..|||.|+|.+......++-...+.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 368999999999999999999999999999999999777653 2445999999999999999988888889999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+||++.+-.+.+...|..++.+.. .++||+++|||.|..... .+...+......++.++++||+++.|.+.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccch
Confidence 999999989999999999887654 469999999999976542 2222344455567789999999999999999
Q ss_pred HHHHHHhh
Q 029978 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
-++.+.+.
T Consensus 162 l~LarKl~ 169 (216)
T KOG0096|consen 162 LWLARKLT 169 (216)
T ss_pred HHHhhhhc
Confidence 99887754
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-22 Score=128.61 Aligned_cols=161 Identities=22% Similarity=0.385 Sum_probs=128.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.++|+++|++..|||||+-++.++++...+..+.+..... +....+.+.+||..|++++..+.+....++-+++++
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 4899999999999999999999998888888888765543 345568899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH--hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
||++.++....+..|+.+.....+ .-+| |+||||.|..-...+ ++.....+....+.-.++.++||+.++.||+.+
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 999999999999999998876544 5567 577999987543322 222222233333444567999999999999999
Q ss_pred HHHHHHHhh
Q 029978 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
|..++..+-
T Consensus 178 FK~vlAklF 186 (205)
T KOG1673|consen 178 FKIVLAKLF 186 (205)
T ss_pred HHHHHHHHh
Confidence 999887764
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-20 Score=123.35 Aligned_cols=156 Identities=24% Similarity=0.349 Sum_probs=120.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC------------CCCCCCCccceeeEEeeCC-EEEEEEeCCCcccchHhHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY------------SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRFRSMWER 83 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~------------~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~ 83 (184)
....||+++|+.++||||+++++..... ..+...|+..++....... ..+.+++||||+++..+|.-
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~ 87 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEI 87 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHH
Confidence 4568999999999999999999985432 1112244555555544433 78999999999999999999
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+.+++.++++++|.+....+ .....+ .+..... .+|+++++||.|+.....++++.+.+.... ...++++++|
T Consensus 88 l~~ga~gaivlVDss~~~~~-~a~~ii-~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~a 160 (187)
T COG2229 88 LSRGAVGAIVLVDSSRPITF-HAEEII-DFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEIDA 160 (187)
T ss_pred HhCCcceEEEEEecCCCcch-HHHHHH-HHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeeec
Confidence 99999999999999998877 332322 2222211 299999999999999988888888776653 3457999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 029978 164 KNSTNIDTVIDWLVKH 179 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~ 179 (184)
.++.++.+.++.+...
T Consensus 161 ~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 161 TEGEGARDQLDVLLLK 176 (187)
T ss_pred ccchhHHHHHHHHHhh
Confidence 9999999999888765
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-21 Score=148.19 Aligned_cols=153 Identities=19% Similarity=0.144 Sum_probs=101.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc--CCCC-------------------------------CCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT--GGYS-------------------------------EDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~--~~~~-------------------------------~~~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|+.++|||||+.+|+. +... .+...|.......+...+
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 5668999999999999999999984 2111 112334444445566778
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCC--H-
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALS--K- 139 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~- 139 (184)
+.+.+|||||++++.......+..+|++++|+|+++.+++...+. ....+.... ...|+++|+||+|+.+... .
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHHH
Confidence 899999999999887777777889999999999998753322111 112222221 2357999999999974211 1
Q ss_pred ---hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 140 ---EDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 140 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+++.+.+.........++++++||++|.|+++
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12222221111112346899999999999986
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-20 Score=139.48 Aligned_cols=159 Identities=18% Similarity=0.191 Sum_probs=120.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCccc----------ch-HhHHHh
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR----------FR-SMWERY 84 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~-~~~~~~ 84 (184)
.++|+|+|.|++|||||+|++++.+. .+..+.|.......++.....+.++||+|..+ |. ......
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 59999999999999999999997653 45566677777777777888999999999432 21 122345
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--CCHhHHHHHcCCCCcCCCceeEEEee
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
+..++++++|+|++.+-+ ........+... .+.++++|+||+|+.+. ...++..+.+......-..++++++|
T Consensus 258 I~~a~vvllviDa~~~~~--~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 258 IERADVVLLVIDATEGIS--EQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred HhhcCEEEEEEECCCCch--HHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence 678999999999997543 333333333333 57899999999999775 44556666666655566678999999
Q ss_pred eCCCCCHHHHHHHHHHHhhh
Q 029978 163 CKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~ 182 (184)
|+++.+++++++.+.++.+.
T Consensus 333 A~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred ecCCCChHHHHHHHHHHHHH
Confidence 99999999999999887553
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=148.25 Aligned_cols=157 Identities=22% Similarity=0.329 Sum_probs=112.2
Q ss_pred EEEEEcCCCCChHHHHHHHHc--CCCCC----------------CCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT--GGYSE----------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~--~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (184)
+|+|+|+.++|||||+++++. +.+.. +...|+......+.+.++++++|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 789999999999999999985 22221 122344344455778889999999999999999999
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCC-CC-cCCCcee
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGL-KS-ITDREVC 157 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~-~~-~~~~~~~ 157 (184)
.+++.+|++++|+|+.+. .......++..+.. .++|+++|+||+|+..... .+++.+.+.. .. .....++
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 999999999999999863 23334445554443 4689999999999865422 1222222211 00 1123467
Q ss_pred EEEeeeCCCC----------CHHHHHHHHHHHhhh
Q 029978 158 CYMISCKNST----------NIDTVIDWLVKHSKS 182 (184)
Q Consensus 158 ~~~~Sa~~~~----------~v~~l~~~i~~~~~~ 182 (184)
++++||++|. |++.+++.|.+.+..
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 9999999996 799999999988753
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=144.51 Aligned_cols=162 Identities=16% Similarity=0.173 Sum_probs=103.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC---C--CCCCCccceeeE-------------------E-ee------CCEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS---E--DMIPTVGFNMRK-------------------V-TK------GNVT 65 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~---~--~~~~t~~~~~~~-------------------~-~~------~~~~ 65 (184)
++.++|+++|++++|||||++.+.+.... . +...|+...+.. . +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 46789999999999999999999742110 0 111122111100 0 01 1467
Q ss_pred EEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHH
Q 029978 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQ 145 (184)
Q Consensus 66 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~ 145 (184)
+.+|||||+++|...+......+|++++|+|+++..........+..+ ... ...|+++|+||+|+.+.....+..++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999888888888999999999998643112222222222 211 12478999999999764322222222
Q ss_pred cCC--CCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 146 MGL--KSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 146 ~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+.. .......++++++||++|.|++++++.|.+.+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 211 111123467999999999999999999988653
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=131.74 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=92.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC-CC--------------------------------CCCCCccceeeEEeeCCEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGY-SE--------------------------------DMIPTVGFNMRKVTKGNVTIK 67 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~-~~--------------------------------~~~~t~~~~~~~~~~~~~~~~ 67 (184)
+|+++|++|+|||||+++|+...- .. +...|.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999974211 00 122233333444556677899
Q ss_pred EEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHH
Q 029978 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQ 145 (184)
Q Consensus 68 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~ 145 (184)
+|||||++++.......++.+|++++|+|+++... ........+.... ...++|+|+||+|+.+... .+++...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~--~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL--EQTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc--HhHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998887666777889999999999987432 1111122222221 1245788999999975321 1122222
Q ss_pred cCC--CCcCCCceeEEEeeeCCCCCHHH
Q 029978 146 MGL--KSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 146 ~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+.. ........+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 110 00111234699999999999875
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=133.71 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=95.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcC--CC-------------------------------CCCCCCCccceeeEEeeCCEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATG--GY-------------------------------SEDMIPTVGFNMRKVTKGNVTIK 67 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~--~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 67 (184)
+|+++|++++|||||+.+|+.. .. ..+...|.......+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999721 00 01112233334445667788999
Q ss_pred EEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCC---h---HHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc----C
Q 029978 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN---L---PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA----L 137 (184)
Q Consensus 68 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~ 137 (184)
+|||||+..+.......++.+|++++|+|+++... + ......+... ... ...|+++|+||+|+... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEccccccccccHH
Confidence 99999998887777777888999999999987421 1 1112222222 111 23689999999999742 1
Q ss_pred CHhHHHHHcC----CCCcCCCceeEEEeeeCCCCCHH
Q 029978 138 SKEDLMEQMG----LKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 138 ~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
..+++.+.+. ........++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1223333221 11122235789999999999986
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=145.49 Aligned_cols=160 Identities=20% Similarity=0.256 Sum_probs=111.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc--CCCCCC----------------CCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT--GGYSED----------------MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~--~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
.+-.+|+|+|+.++|||||+++++. +.+... ...|+......+.+.++.+++|||||+.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 3456899999999999999999996 333221 1112222333456778999999999999999
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCC-CCc-CC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGL-KSI-TD 153 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~-~~~-~~ 153 (184)
..+..+++.+|++++|+|+.+.... .....+..... .++|.++|+||+|+..... .+++.+.+.. ... ..
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 9999999999999999999874322 22333333322 4689999999999875432 2223332211 111 12
Q ss_pred CceeEEEeeeCCCC----------CHHHHHHHHHHHhh
Q 029978 154 REVCCYMISCKNST----------NIDTVIDWLVKHSK 181 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~----------~v~~l~~~i~~~~~ 181 (184)
..+|++++||++|. |+..|++.|.+.+.
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 34689999999998 58999999988765
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-20 Score=148.52 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHc---CCCCCC--CCCCccceeeEEee-CCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT---GGYSED--MIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~---~~~~~~--~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.|+++|++++|||||++++.+ +.++.+ ...|+...+..+.. .+..+.+|||||+++|.......+..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 3589999999999999999985 233323 35555544444432 34568999999999998877788899999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCCHhHHHHHcCCC--CcCCCceeEEEeeeCCCCCHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALSKEDLMEQMGLK--SITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
|+|+++.. .........++.. .++| +++|+||+|+.+....++..+++... .......+++++||++|.|++
T Consensus 81 VVda~eg~--~~qT~ehl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 81 VVACDDGV--MAQTREHLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 99998632 2222222233322 2355 57999999997643333333322211 111123579999999999999
Q ss_pred HHHHHHHHHhh
Q 029978 171 TVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
+|++.|.+...
T Consensus 156 ~L~~~L~~~~~ 166 (614)
T PRK10512 156 ALREHLLQLPE 166 (614)
T ss_pred HHHHHHHHhhc
Confidence 99999987654
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=129.21 Aligned_cols=151 Identities=21% Similarity=0.217 Sum_probs=99.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC--CCCCCccceeeEEeeCCEEEEEEeCCCcccch-------HhHHHhccCCCEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR-------SMWERYCRAVSAI 91 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~~~~ 91 (184)
+|+++|++|+|||||++++.+..... ....|.......+...+..+++||+||..... ......++.+|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 68999999999999999999754321 12334444444455677899999999974322 2334578899999
Q ss_pred EEEEeCCCCCC-hHHHHHHHHH----------------------------------------HhcCC-------------
Q 029978 92 VYVVDAADYDN-LPVSRSELHD----------------------------------------LLSKP------------- 117 (184)
Q Consensus 92 i~v~d~~~~~~-~~~~~~~~~~----------------------------------------~~~~~------------- 117 (184)
++|+|+++.+. ...+...+.. ++...
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999987542 1111111110 00000
Q ss_pred -----------CCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 118 -----------SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 118 -----------~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
...-+|+++|+||+|+.+. ++...... ..+++++||+++.|++++++.+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~~~~-------~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELDLLAR-------QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHHHHhc-------CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0122599999999999654 33332111 124899999999999999999998764
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-20 Score=145.76 Aligned_cols=156 Identities=18% Similarity=0.238 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCC----CCCCccceeeEEeeC----------------CEEEEEEeCCCcccchH
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSED----MIPTVGFNMRKVTKG----------------NVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~----~~~t~~~~~~~~~~~----------------~~~~~~~D~~g~~~~~~ 79 (184)
-.|+++|++++|||||++++.+..+... ..++++......+.. ...+.+|||||++.+..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 3589999999999999999997765432 222333333222110 01388999999999999
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--------------HhHH---
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--------------KEDL--- 142 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--------------~~~~--- 142 (184)
++...++.+|++++|+|+++...-+.. ..+ .++.. .++|+++|+||+|+.+... .+++
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~-e~i-~~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~ 159 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQ-EAL-NILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQN 159 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHH-HHH-HHHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHH
Confidence 989999999999999999874322221 111 12222 4689999999999964210 0001
Q ss_pred -----------HHHcCCCC-------cCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 143 -----------MEQMGLKS-------ITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 143 -----------~~~~~~~~-------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
....++.. ......+++++||++|.|+++|++++....
T Consensus 160 ~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 160 LDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 11122211 123357899999999999999999887543
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-19 Score=135.06 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=113.4
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchH--------hH
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS--------MW 81 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~ 81 (184)
....+.+++++|+|.||+|||||+|.|++.+. ..-++.|...-...++...+.+.+.||+|...-.. ..
T Consensus 211 g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs 290 (454)
T COG0486 211 GKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERA 290 (454)
T ss_pred hhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHH
Confidence 34457789999999999999999999997653 45566677777777888999999999999543222 23
Q ss_pred HHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEe
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
...+..+|.+++|+|.+.+.+-.. ..... ....++|+++|.||.|+......... +. ....+++.+
T Consensus 291 ~~~i~~ADlvL~v~D~~~~~~~~d--~~~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~--~~------~~~~~~i~i 356 (454)
T COG0486 291 KKAIEEADLVLFVLDASQPLDKED--LALIE----LLPKKKPIIVVLNKADLVSKIELESE--KL------ANGDAIISI 356 (454)
T ss_pred HHHHHhCCEEEEEEeCCCCCchhh--HHHHH----hcccCCCEEEEEechhcccccccchh--hc------cCCCceEEE
Confidence 445788999999999998522111 11111 22367999999999999876442222 11 112258999
Q ss_pred eeCCCCCHHHHHHHHHHHhh
Q 029978 162 SCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~~~ 181 (184)
||+++.|++.|.+.|.+...
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred EecCccCHHHHHHHHHHHHh
Confidence 99999999999999988765
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.8e-20 Score=141.47 Aligned_cols=162 Identities=18% Similarity=0.177 Sum_probs=102.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC---CCC--CCCCCccceeeE--------------E------e------eCCEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG---YSE--DMIPTVGFNMRK--------------V------T------KGNVT 65 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~---~~~--~~~~t~~~~~~~--------------~------~------~~~~~ 65 (184)
++.++|+++|+.++|||||+.+|.+.- .+. +...|+...+.. + + .....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 567999999999999999999996421 111 122232221100 0 0 00368
Q ss_pred EEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHH
Q 029978 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQ 145 (184)
Q Consensus 66 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~ 145 (184)
+.+|||||++++..........+|++++|+|+++..........+..+ ... ...|+++|+||+|+.+.....+..+.
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHHHH
Confidence 999999999998877666677889999999998643111112222222 111 12468999999999764332221222
Q ss_pred cCC--CCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 146 MGL--KSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 146 ~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+.. ........+++++||++|.|+++|++.|.+.+.
T Consensus 164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 111 011123467999999999999999999988654
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=129.33 Aligned_cols=153 Identities=22% Similarity=0.234 Sum_probs=99.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCC----------------CCc-------ccee-----------------eEEe
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMI----------------PTV-------GFNM-----------------RKVT 60 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~----------------~t~-------~~~~-----------------~~~~ 60 (184)
+|+++|+.++|||||+.++..+.+..... .|. +++. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999999655432211 111 0110 1122
Q ss_pred eCCEEEEEEeCCCcccchHhHHHhcc--CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 61 KGNVTIKLWDLGGQPRFRSMWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
.....+.++||||++++.......+. .+|++++|+|+.... ......+..++.. .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--~~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--IGMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 33568999999999988765555553 689999999987643 2222223333322 4689999999999875433
Q ss_pred HhHHHH----HcCCC---------------------CcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 139 KEDLME----QMGLK---------------------SITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 139 ~~~~~~----~~~~~---------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
..+..+ .+... ......+|++.+||.+|.|+++|.+.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 333222 22210 11223458999999999999999988754
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-20 Score=119.24 Aligned_cols=135 Identities=19% Similarity=0.238 Sum_probs=92.1
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCC----cccchHhHHHhccCCCEEEEEEe
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----QPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
||+++|+.|+|||||+++|.+....-.. |. .+... =.++|||| ...++.........+|.++++.|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~K--Tq-----~i~~~---~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKK--TQ-----AIEYY---DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCc--cc-----eeEec---ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 7899999999999999999864432221 11 11111 23479999 33455555666678999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc-CcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP-EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
++++.+.... . .....+.|+|=|+||+|+. +..+.+...+.+...... .+|++|+.+|.|+++|.++
T Consensus 73 at~~~~~~pP-----~---fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 73 ATEPRSVFPP-----G---FASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred CCCCCccCCc-----h---hhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHH
Confidence 9986543221 1 1222568999999999998 333444444444433222 3799999999999999998
Q ss_pred HH
Q 029978 176 LV 177 (184)
Q Consensus 176 i~ 177 (184)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=123.66 Aligned_cols=154 Identities=21% Similarity=0.247 Sum_probs=96.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeCCEEEEEEeCCCccc----------chHhHHHhcc--
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKGNVTIKLWDLGGQPR----------FRSMWERYCR-- 86 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~-- 86 (184)
.|+++|++|+|||||++.+.++.......++.+.... ..... ..+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 3799999999999999999966665555555443222 12222 2899999999432 3333334443
Q ss_pred -CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc-CCCceeEEEeeeC
Q 029978 87 -AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCK 164 (184)
Q Consensus 87 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 164 (184)
..+.+++++|......... ......+.. .+.|+++|+||+|+.................. .....+++++||+
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 3567889999876532221 111222222 35899999999999654332222222211111 2334578999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 029978 165 NSTNIDTVIDWLVKHS 180 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~ 180 (184)
++.|++++++.+.+++
T Consensus 155 ~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 155 KGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=146.35 Aligned_cols=152 Identities=20% Similarity=0.218 Sum_probs=104.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCCccceeeEEeeCCEEEEEEeCCCcccchH----------hHHHh-
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS----------MWERY- 84 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~- 84 (184)
+.++|+++|++|||||||+|++++..... .+..|.......+...+.++.+|||||...+.. ....+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 35789999999999999999998765432 233344444445667778999999999865431 11223
Q ss_pred -ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 85 -CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 85 -~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
...+|++++|+|+++.+.. ..++.++.+ .++|+++|+||+|+.+........+.+.. ...++++++||
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~----~LG~pVvpiSA 150 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSA----RLGCPVIPLVS 150 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHH----HhCCCEEEEEe
Confidence 2478999999999875432 223333332 46899999999998644322222222211 12346999999
Q ss_pred CCCCCHHHHHHHHHHHh
Q 029978 164 KNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~ 180 (184)
+++.|++++.+.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999998764
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=130.76 Aligned_cols=112 Identities=26% Similarity=0.308 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC-CCCC-----------------------CCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGG-YSED-----------------------MIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~-~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
-+|+++|++|+|||||+++++... .... ...++......+++.++++++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999998321 1000 0112222334577888999999999999
Q ss_pred cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 76 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
+|.......++.+|++++|+|+++..... ...++. ... ..++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~-~~~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFE-VCR---LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHH-HHH---hcCCCEEEEEECCccCCC
Confidence 98887778889999999999998743222 222232 222 247899999999998543
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-19 Score=118.32 Aligned_cols=175 Identities=34% Similarity=0.564 Sum_probs=139.8
Q ss_pred hHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHH
Q 029978 3 LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (184)
||.+.++++- ..++.-|++++|-.|+|||||++.+. ++.-.+..||..........++.++.-+|..|+..-+..+.
T Consensus 6 wF~~VLq~Lg--L~kK~gKllFlGLDNAGKTTLLHMLK-dDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wk 82 (193)
T KOG0077|consen 6 WFSSVLQFLG--LYKKFGKLLFLGLDNAGKTTLLHMLK-DDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWK 82 (193)
T ss_pred HHHHHHHHHH--HhccCceEEEEeecCCchhhHHHHHc-cccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHH
Confidence 5666776665 33778899999999999999999886 44455667777777777778899999999999999999999
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCC------------CC
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL------------KS 150 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~------------~~ 150 (184)
.++..+|++++++|+-+.+.|.+.+..+..++......+.|+++.+||+|.+.....++.....++ ..
T Consensus 83 dyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~ 162 (193)
T KOG0077|consen 83 DYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTD 162 (193)
T ss_pred HHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccC
Confidence 999999999999999999999999988888877666678999999999999887665555544432 12
Q ss_pred cCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 151 ITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
...+...++.||...+.+-.+-+.++.+++
T Consensus 163 ~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 163 SNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred CCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 223456788899988888777776665543
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=143.88 Aligned_cols=140 Identities=26% Similarity=0.306 Sum_probs=96.2
Q ss_pred cCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEeeCCEEEEEEeCCCcccchHh------HHHhc--cCCCEEEEEE
Q 029978 26 GLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFRSM------WERYC--RAVSAIVYVV 95 (184)
Q Consensus 26 G~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~i~v~ 95 (184)
|.+|+|||||+|++.+..+...+.+ |.......++..+..+++|||||+..+... ...++ +.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 8999999999999998765444333 333333345556678999999998765432 23332 4789999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC----HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS----KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+++.+. ......++.+ .++|+++|+||+|+.+... .++..+.+ +.+++++||++|.|+++
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l--------g~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL--------GVPVVPTSATEGRGIER 145 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc--------CCCEEEEECCCCCCHHH
Confidence 9987442 1222233322 4689999999999864322 12222222 24699999999999999
Q ss_pred HHHHHHHHh
Q 029978 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+++.+.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998754
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-19 Score=135.92 Aligned_cols=161 Identities=17% Similarity=0.143 Sum_probs=105.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCC------------------CCCCCCccceeeEEeeCCEEEEEEeCCCcccc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (184)
.++.++|+++|++++|||||+++|++.... .....|.......+...+..+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 356799999999999999999999852110 12222333333344455678999999999998
Q ss_pred hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCCHh-----HHHHHcCCCCc
Q 029978 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALSKE-----DLMEQMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~-----~~~~~~~~~~~ 151 (184)
.......+..+|++++|+|+.....-+ ....+. +... .++| +|+|+||+|+.+..... ++.+.+.....
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~-~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHIL-LARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHH-HHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 877777778999999999998632211 122222 2222 3577 67899999997432211 11122111111
Q ss_pred CCCceeEEEeeeCCCC--------CHHHHHHHHHHHhh
Q 029978 152 TDREVCCYMISCKNST--------NIDTVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~~~ 181 (184)
....++++++||++|. ++++|++.+.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 1234689999999983 68888888887654
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=118.86 Aligned_cols=164 Identities=22% Similarity=0.306 Sum_probs=110.0
Q ss_pred HHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCC----CCCCCCCccceeeEEeeCCEEEEEEeCCC----------cc
Q 029978 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGY----SEDMIPTVGFNMRKVTKGNVTIKLWDLGG----------QP 75 (184)
Q Consensus 10 ~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----------~~ 75 (184)
++..++.+....|+++|.+|||||||||++++... ...++.|....+..++. .+.+.|.|| .+
T Consensus 15 ~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 15 DIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred CHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHH
Confidence 34556677788999999999999999999998553 33344444334443333 388899998 23
Q ss_pred cchHhHHHhccC---CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh----HHHHHcCC
Q 029978 76 RFRSMWERYCRA---VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE----DLMEQMGL 148 (184)
Q Consensus 76 ~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~----~~~~~~~~ 148 (184)
........|+.. ..++++++|+..+-. .....+.+++.. .++|+++|+||+|+....... .+.+.+..
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~ 166 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKK 166 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcC
Confidence 334455556543 467888999876432 333333333333 679999999999998864443 33334443
Q ss_pred CCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 149 KSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 149 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
......+ ++..|+..+.|++++.+.|.+.+...
T Consensus 167 ~~~~~~~--~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 167 PPPDDQW--VVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred CCCccce--EEEEecccccCHHHHHHHHHHHhhcc
Confidence 3333222 77889999999999999999887653
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-19 Score=140.39 Aligned_cols=155 Identities=18% Similarity=0.300 Sum_probs=101.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCC----CCCCccceeeEEee------CC-----E-----EEEEEeCCCcccc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSED----MIPTVGFNMRKVTK------GN-----V-----TIKLWDLGGQPRF 77 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~----~~~t~~~~~~~~~~------~~-----~-----~~~~~D~~g~~~~ 77 (184)
+...|+++|++++|||||++++.+...... ..++++......+. .. . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 445799999999999999999975433211 12233322222110 00 1 2689999999999
Q ss_pred hHhHHHhccCCCEEEEEEeCCCC---CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--------------Hh
Q 029978 78 RSMWERYCRAVSAIVYVVDAADY---DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--------------KE 140 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--------------~~ 140 (184)
...+...++.+|++++|+|+++. +++..+ . +... .++|+++|+||+|+.+... ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~-~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAI----N-ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH----H-HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 98888888999999999999873 222222 1 2222 4789999999999853110 00
Q ss_pred -----------HH---HHHcCCCC-------cCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 141 -----------DL---MEQMGLKS-------ITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 141 -----------~~---~~~~~~~~-------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
++ ....++.. ......+++++||++|.|++++++.+...+
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 01 11112211 112357899999999999999999887543
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-19 Score=139.54 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=125.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+.++|+++|+.|+||||||-+++..+|++...+-......+.+ -..+...+.|++..++-+......++.+|++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 457799999999999999999999999998887776665555433 233558899998777767777888899999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCccCcCCH--hH-HHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPS--LNGIPLLVLGNKIDKPEALSK--ED-LMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
++++++++++..+...|..+.++.. ..++|||+||||+|....... +. ....+..... --.+++|||++-.|
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E---iEtciecSA~~~~n 162 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE---IETCIECSALTLAN 162 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH---HHHHHhhhhhhhhh
Confidence 9999999999999987777765533 368999999999999765443 22 2222211111 11489999999999
Q ss_pred HHHHHHHHHHHhh
Q 029978 169 IDTVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~~~ 181 (184)
+.++|....+++.
T Consensus 163 ~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 163 VSELFYYAQKAVI 175 (625)
T ss_pred hHhhhhhhhheee
Confidence 9999998877653
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-18 Score=124.37 Aligned_cols=111 Identities=22% Similarity=0.234 Sum_probs=80.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC-C-------------------CCCCCccceeeEEeeCCEEEEEEeCCCcccchHh
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS-E-------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~-~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
+|+++|++|+|||||+++++...-. . ....++......+.+.++.+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999742110 0 0122233334456677889999999999988888
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
....++.+|++++|+|++....... ...+..+. ..++|.++|+||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~----~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFAD----EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHH----HcCCCEEEEEECCccCCC
Confidence 8889999999999999987654332 22233222 246899999999998753
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=133.78 Aligned_cols=159 Identities=19% Similarity=0.158 Sum_probs=103.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC-------CC-----------CCCCCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG-------GY-----------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~-------~~-----------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
++.++|+++|++++|||||+++|++. .+ +.....|.......+...+..+.++||||+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 56799999999999999999999852 10 0012223333333344566789999999999888
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCccCcCCH-h----HHHHHcCCCCcC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPEALSK-E----DLMEQMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+.....-+ ....+. ++.. .++|.+ +|+||+|+.+.... + ++.+.+......
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~-~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQ-TREHIL-LARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchh-HHHHHH-HHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 77777788999999999998643211 122222 2222 457865 57999999743221 1 121121111111
Q ss_pred CCceeEEEeeeCCCC----------CHHHHHHHHHHHh
Q 029978 153 DREVCCYMISCKNST----------NIDTVIDWLVKHS 180 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~----------~v~~l~~~i~~~~ 180 (184)
....+++++||++|. ++.+|++.+.+.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 134689999999984 6788888887764
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=136.81 Aligned_cols=115 Identities=23% Similarity=0.293 Sum_probs=81.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc-CCCCC-----------------------CCCCCccceeeEEeeCCEEEEEEeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT-GGYSE-----------------------DMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~-~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+..+|+|+|++++|||||+++++. ..... +...|+......+++.++.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999973 11100 00111222334467788999999999
Q ss_pred CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
|+.++.......++.+|++++|+|+++.... .....+. .. ...++|+++++||+|+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~-~~---~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLME-VC---RLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHH-HH---HhcCCCEEEEEECCccccc
Confidence 9999988888888999999999999874322 1223332 22 2257999999999998654
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-18 Score=126.13 Aligned_cols=138 Identities=20% Similarity=0.152 Sum_probs=92.2
Q ss_pred EEEEEcCCCCChHHHHHHHHc--CCC------------------CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHh
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT--GGY------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~--~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
+|+++|++|+|||||+++++. +.. ..+...|+......+.+.++++.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999973 110 112233444445567788899999999999998888
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEE
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+...++.+|++++|+|+.+...-+. ...+..+.. .++|+++++||+|+... +.++..+++............++
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~a-~~~~~~~~l~~~l~~~~~~~~~P 154 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR----YNVPRIAFVNKMDRTGA-DFFRVVEQIREKLGANPVPLQLP 154 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCCC-CHHHHHHHHHHHhCCCceEEEec
Confidence 8999999999999999987432221 222332222 46899999999998753 22333333322222223334666
Q ss_pred eeeC
Q 029978 161 ISCK 164 (184)
Q Consensus 161 ~Sa~ 164 (184)
+|+.
T Consensus 155 isa~ 158 (270)
T cd01886 155 IGEE 158 (270)
T ss_pred cccC
Confidence 7665
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=133.34 Aligned_cols=158 Identities=19% Similarity=0.161 Sum_probs=100.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC-----C--C-----------CCCCCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG-----G--Y-----------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~-----~--~-----------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
++.++|+++|+.++|||||+++|++. . + +.+...|+......++..+..+.+|||||+++|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 56799999999999999999999732 0 0 1113334444444555567789999999999988
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCccCcCC-Hh----HHHHHcCCCCcC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPEALS-KE----DLMEQMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 152 (184)
.........+|++++|+|+.....-+ ..+.+..+ .. .++|.+ +|+||+|+.+... .+ ++.+.+......
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQ-TREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHH-HH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 77777778899999999998642222 12222222 22 357755 6899999975322 11 122222211111
Q ss_pred CCceeEEEeeeCCCC--------CHHHHHHHHHHH
Q 029978 153 DREVCCYMISCKNST--------NIDTVIDWLVKH 179 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~ 179 (184)
...++++++||+++. ++.++++.+.+.
T Consensus 165 ~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 165 GDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred ccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 234689999999875 345566655543
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=121.67 Aligned_cols=157 Identities=15% Similarity=0.238 Sum_probs=95.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccc-----eeeEEee-CCEEEEEEeCCCcccchH-----hHHHhccC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGF-----NMRKVTK-GNVTIKLWDLGGQPRFRS-----MWERYCRA 87 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~-----~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~ 87 (184)
.++|+++|++|+|||||+|.+.+...+.....+.+. ....+.. ....+.+|||||...... .....+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 368999999999999999999976554322222221 0011111 123689999999753221 11223567
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---------HhHHHHHcCCC------CcC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---------KEDLMEQMGLK------SIT 152 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---------~~~~~~~~~~~------~~~ 152 (184)
+|.++++.+. .+......+...+.. .+.|+++|+||+|+..... .+++.+.+... ...
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8888887432 344555444444443 2589999999999843211 12323222211 111
Q ss_pred CCceeEEEeeeC--CCCCHHHHHHHHHHHhhh
Q 029978 153 DREVCCYMISCK--NSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 153 ~~~~~~~~~Sa~--~~~~v~~l~~~i~~~~~~ 182 (184)
...+++|.+|+. .++++..|.+.+...+.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 234579999999 579999999999988764
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=121.40 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=121.8
Q ss_pred hHHHHHHHHHhhccC--CceEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEeeCCEEEEEEeCCCccc--
Q 029978 3 LWEAFLNWLRSLFFK--QEMELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-- 76 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-- 76 (184)
++++...+++.++.- ....|+|.|.||||||||++.+++... .+-+..|.+....+++.+..+++++||||.-+
T Consensus 150 fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP 229 (346)
T COG1084 150 FLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP 229 (346)
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCC
Confidence 466777788887764 358899999999999999999997543 45566788888889999999999999999321
Q ss_pred ----c---hHhHHHhccCCCEEEEEEeCCCCCChHHH--HHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC
Q 029978 77 ----F---RSMWERYCRAVSAIVYVVDAADYDNLPVS--RSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG 147 (184)
Q Consensus 77 ----~---~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~ 147 (184)
. +......-+-.++++|++|.+....+.-. ...+.++... .+.|+++|.||+|....+..+++.....
T Consensus 230 l~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~ 306 (346)
T COG1084 230 LEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVL 306 (346)
T ss_pred hHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHH
Confidence 1 11122233557899999999886655433 3345555444 4589999999999987655555544432
Q ss_pred CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 148 LKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
... ......+++..+.+++.+.+.+....
T Consensus 307 ~~~----~~~~~~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 307 EEG----GEEPLKISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred hhc----cccccceeeeehhhHHHHHHHHHHHh
Confidence 221 11256788999999998888887763
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=123.30 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=98.1
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCC---------------------CCCccceeeEE-----eeCCEEEEEEeCCCc
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDM---------------------IPTVGFNMRKV-----TKGNVTIKLWDLGGQ 74 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~---------------------~~t~~~~~~~~-----~~~~~~~~~~D~~g~ 74 (184)
+|+++|++|+|||||+++++........ ..+.......+ +...+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999854322110 01111111111 123578999999999
Q ss_pred ccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc-------C---CHhHHHH
Q 029978 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA-------L---SKEDLME 144 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-------~---~~~~~~~ 144 (184)
.++.......+..+|++++|+|+.+..+... ..++..... .++|+++|+||+|+... + ...+..+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~ 156 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIID 156 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHH
Confidence 9998888888999999999999987665432 223333222 35899999999998521 1 0111111
Q ss_pred Hc-------CCCCc---CCCceeEEEeeeCCCCCHH--------HHHHHHHHHhh
Q 029978 145 QM-------GLKSI---TDREVCCYMISCKNSTNID--------TVIDWLVKHSK 181 (184)
Q Consensus 145 ~~-------~~~~~---~~~~~~~~~~Sa~~~~~v~--------~l~~~i~~~~~ 181 (184)
.+ ..... ......+++.|++.++++. +|++.|.+.+.
T Consensus 157 ~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 157 EVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 11 11100 0012237789999998877 67777666543
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-18 Score=132.67 Aligned_cols=147 Identities=19% Similarity=0.143 Sum_probs=95.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC----------------C--CCCCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY----------------S--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~----------------~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
++.++|+++|++++|||||+++|++..- . .+...|.......+...+..+.+.||||+.++.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 5569999999999999999999985311 0 012222222233344566788999999999888
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCCH-h----HHHHHcCCCCcC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALSK-E----DLMEQMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+.... .........++.. .++| +|+|+||+|+.+.... + ++.+.+......
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~--~~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGP--MPQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 87778888999999999998632 2222222222222 4578 7789999999753221 1 222222211112
Q ss_pred CCceeEEEeeeCCCCC
Q 029978 153 DREVCCYMISCKNSTN 168 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~ 168 (184)
....+++++||.+|.|
T Consensus 165 ~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 165 GDDIPIVSGSALLALE 180 (409)
T ss_pred CCcceEEEcchhhccc
Confidence 2347899999998864
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5e-18 Score=122.19 Aligned_cols=161 Identities=21% Similarity=0.233 Sum_probs=109.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCccc------c------hHhH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR------F------RSMW 81 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~------~------~~~~ 81 (184)
.+.+.|+++|.||+|||||.|.+.+... ..+...|.......+..+...+.|+||||... + ....
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 4458999999999999999999998765 34455666666777888899999999999321 1 1122
Q ss_pred HHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-----------------HhHHHH
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-----------------KEDLME 144 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-----------------~~~~~~ 144 (184)
...+..+|++++++|+++....... ..+..+..+ ..+|-++|.||+|...... ..++.+
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 3446779999999999963322222 122222222 4689999999999876421 112222
Q ss_pred HcCCCC---------cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 145 QMGLKS---------ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 145 ~~~~~~---------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
...... -+..+-.+|.+||++|.||+++-+++...+.
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 222111 0112335899999999999999999987654
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=132.35 Aligned_cols=149 Identities=14% Similarity=0.146 Sum_probs=98.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--C-------------------------------CCCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--Y-------------------------------SEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~~ 63 (184)
++.++++++|+.++|||||+.+|+... . +.+...|+......+...+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 567899999999999999999987311 0 0111223333344456677
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChH-------HHHHHHHHHhcCCCCCCC-cEEEEeeCCCccC
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP-------VSRSELHDLLSKPSLNGI-PLLVLGNKIDKPE 135 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~-piilv~nK~D~~~ 135 (184)
..++++|+||+++|.......+..+|++++|+|+.+. .|. ..+..+. ++.. .++ ++|+++||+|+.+
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHH---cCCCcEEEEEEcccCCc
Confidence 8999999999999999889999999999999999862 221 2222222 2222 356 4788999999862
Q ss_pred c----CC----HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 136 A----LS----KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 136 ~----~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
. .. .+++...+.........++++++||++|.|+.
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 1 11 12222222211122234689999999999985
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.1e-18 Score=119.64 Aligned_cols=109 Identities=23% Similarity=0.231 Sum_probs=77.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC--CC----------------CCCCCccceeeE--Ee--------eCCEEEEEEeCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGY--SE----------------DMIPTVGFNMRK--VT--------KGNVTIKLWDLG 72 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~--~~----------------~~~~t~~~~~~~--~~--------~~~~~~~~~D~~ 72 (184)
+|+++|+.++|||||+.+|+...- .. +...|+...... +. ...+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999984221 10 111122222111 22 226889999999
Q ss_pred CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
|+++|.......++.+|++++|+|+.+....+. ...+..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999987654443 222222222 358999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.2e-18 Score=129.85 Aligned_cols=159 Identities=18% Similarity=0.115 Sum_probs=104.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC------------------CCCCCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
++.++|+++|+.++|||||+++|++... +.....|+......+...+..+.+.||||+.++.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 5679999999999999999999985210 0122223333333444566789999999999888
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCccCcCC-Hh----HHHHHcCCCCcC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPEALS-KE----DLMEQMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+..... .....+..++.. .++|.+ +++||+|+.+... .+ ++.+.+......
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~--~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM--PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc--hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777788899999999999976422 222222222222 457876 5899999974321 11 222222211112
Q ss_pred CCceeEEEeeeCCCC----------CHHHHHHHHHHHh
Q 029978 153 DREVCCYMISCKNST----------NIDTVIDWLVKHS 180 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~----------~v~~l~~~i~~~~ 180 (184)
....+++++||+++. ++.++++.|.+.+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 245789999999875 5678888887654
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=136.42 Aligned_cols=115 Identities=25% Similarity=0.220 Sum_probs=88.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC-------------CC-------CCCCCCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG-------------YS-------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~-------------~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
.+-.+|+|+|+.|+|||||+++++... +. .+...|+......+.+.+..+++|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 456799999999999999999998421 00 0234455555566778889999999999999
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
+...+..+++.+|++++|+|+++....+.. ..+..+.. .++|+++|+||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 988889999999999999999886655443 33333322 46899999999998764
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.7e-18 Score=132.42 Aligned_cols=154 Identities=14% Similarity=0.072 Sum_probs=98.0
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCC--CC---------------------------------CCCCCccceeeEE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGY--SE---------------------------------DMIPTVGFNMRKV 59 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~--~~---------------------------------~~~~t~~~~~~~~ 59 (184)
..+..++|+++|++++|||||+.+|+...- .. +...|+......+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 346779999999999999999999983211 00 0111223333345
Q ss_pred eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-
Q 029978 60 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS- 138 (184)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~- 138 (184)
...+..+.++||||+++|.......+..+|++++|+|+.....-+. .....+..... ..|+|+|+||+|+.+...
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt--~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT--RRHSFIATLLG--IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc--hHHHHHHHHhC--CCceEEEEEeeccccchhH
Confidence 5667889999999999887666666799999999999976421111 11111222111 247899999999974321
Q ss_pred -HhHHHHHcCC---CCcCCCceeEEEeeeCCCCCHHHH
Q 029978 139 -KEDLMEQMGL---KSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 139 -~~~~~~~~~~---~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
.+++.+.+.. ........+++++||++|.|++++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2223222211 000023467999999999999764
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=130.78 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=96.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC------CC------------CCCCCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG------GY------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~------~~------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
++.++|+++|++++|||||+++|+.. .. ......|+......++..+..+.++|+||+++|.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 55799999999999999999999841 11 1112223333333455667789999999999998
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCC-Hh----HHHHHcCCCCcC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALS-KE----DLMEQMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+.+...-+ .+..+. +... .++| +++++||+|+.+.+. .+ ++.+.+......
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~-~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMPQ-TKEHIL-LAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHH-HHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 88888888999999999998643212 122222 2222 3678 778999999975321 11 122222111112
Q ss_pred CCceeEEEeeeCCCCC
Q 029978 153 DREVCCYMISCKNSTN 168 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~ 168 (184)
....+++++||.++.|
T Consensus 234 ~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 234 GDDIPIISGSALLALE 249 (478)
T ss_pred cCcceEEEEEcccccc
Confidence 2467899999998753
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.7e-18 Score=136.12 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=103.1
Q ss_pred HHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCC-C------------CC----------------------CC
Q 029978 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYS-E------------DM----------------------IP 50 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~-~------------~~----------------------~~ 50 (184)
++..|+.....++.++|+++|++++|||||+++++...-. . .. ..
T Consensus 11 ~~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~ 90 (632)
T PRK05506 11 DILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGI 90 (632)
T ss_pred cHHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCc
Confidence 4566777777788899999999999999999999842210 0 01 11
Q ss_pred CccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 029978 51 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 130 (184)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 130 (184)
|+......+...+..+.++||||++++.......+..+|++++|+|+.....-+. ... ..+.... ...|+++|+||
T Consensus 91 Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~-~~~~~~~--~~~~iivvvNK 166 (632)
T PRK05506 91 TIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRH-SFIASLL--GIRHVVLAVNK 166 (632)
T ss_pred CceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHH-HHHHHHh--CCCeEEEEEEe
Confidence 2222333455566789999999999887666667889999999999976422111 111 1122211 12578999999
Q ss_pred CCccCcCC--HhHHHHHcCC--CCcCCCceeEEEeeeCCCCCHHH
Q 029978 131 IDKPEALS--KEDLMEQMGL--KSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 131 ~D~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+.+... .+++..++.. ........+++++||++|.|+++
T Consensus 167 ~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 167 MDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 99974211 1222222210 01111235699999999999874
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-17 Score=129.99 Aligned_cols=115 Identities=20% Similarity=0.284 Sum_probs=81.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc-CCCCCC-----------------------CCCCccceeeEEeeCCEEEEEEeC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT-GGYSED-----------------------MIPTVGFNMRKVTKGNVTIKLWDL 71 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~-~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~D~ 71 (184)
..+..+|+|+|++++|||||+++++. ...... ...|+......+++.++.+++|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 35667999999999999999999862 111100 011112233446778899999999
Q ss_pred CCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 72 GGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 72 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
||+.++.......++.+|++++|+|+.+. +......+...... .++|+++++||+|+..
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 99998888778888999999999999863 22222222233332 5689999999999864
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-18 Score=131.27 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=99.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc--CCCC-------------------------------CCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT--GGYS-------------------------------EDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~--~~~~-------------------------------~~~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|+.++|||||+.+++. +... .+...|+......+...+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 5678999999999999999999974 1100 111223333444566677
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC---Ch---HHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccC-
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NL---PVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPE- 135 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~- 135 (184)
..+.++||||+++|.......+..+|++++|+|+.... .+ ...++.+.. +.. .++| +|+++||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~-~~~---~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALL-AFT---LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHH-HHH---cCCCeEEEEEEccccccc
Confidence 89999999999999888888889999999999998632 11 122222222 222 3566 678999999532
Q ss_pred ---cCCHhHHHHHc----CCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 136 ---ALSKEDLMEQM----GLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 136 ---~~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
....+++.+++ .........++++++||.+|.|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11222333322 2212222357899999999999863
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=128.74 Aligned_cols=158 Identities=22% Similarity=0.300 Sum_probs=111.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCC--CCccceeeEEee---CCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMI--PTVGFNMRKVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~--~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..-|+++|+...|||||+..+........-. -|-....+.+.. ..-.+.|+|||||+-|..++.+-..-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 34568999999999999999998655432221 122222233333 2357999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC---CC-CcCCCceeEEEeeeCCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG---LK-SITDREVCCYMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+++++.- + ....+-.++.+..++|++++.||+|+++. +++.+..++. +. ..+.....++++||++|.|
T Consensus 84 LVVa~dDGv--~---pQTiEAI~hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 84 LVVAADDGV--M---PQTIEAINHAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEccCCc--c---hhHHHHHHHHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 999999732 2 22222233344478999999999999854 3344333332 22 2233457899999999999
Q ss_pred HHHHHHHHHHHhh
Q 029978 169 IDTVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~~~ 181 (184)
+++|++.++-...
T Consensus 158 i~eLL~~ill~ae 170 (509)
T COG0532 158 IDELLELILLLAE 170 (509)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876543
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=106.53 Aligned_cols=165 Identities=15% Similarity=0.235 Sum_probs=121.4
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeE-Ee---eCCEEEEEEeCCCcccc-hHhHHHhccC
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRK-VT---KGNVTIKLWDLGGQPRF-RSMWERYCRA 87 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~-~~---~~~~~~~~~D~~g~~~~-~~~~~~~~~~ 87 (184)
...+..+|+++|.-++|||.++.+++-+.. ..+..||+.-.+.- ++ +..=.+.++||.|-... ..+...++.-
T Consensus 5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 346789999999999999999999985543 45566777644432 22 12236889999997666 5677788899
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++||+..+++||+.......++-.......+||++.+||.|+.+... .....+....+...+..+++++.+..
T Consensus 85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~---vd~d~A~~Wa~rEkvkl~eVta~dR~ 161 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE---VDMDVAQIWAKREKVKLWEVTAMDRP 161 (198)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchh---cCHHHHHHHHhhhheeEEEEEeccch
Confidence 999999999999999998876555555555557899999999999965422 11111222233344568999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
.+-+.|..+...+.+
T Consensus 162 sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 162 SLYEPFTYLASRLHQ 176 (198)
T ss_pred hhhhHHHHHHHhccC
Confidence 999999988877654
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.1e-18 Score=130.29 Aligned_cols=148 Identities=14% Similarity=0.098 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC--CC---------------------------------CCCCCCccceeeEEeeCCE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGG--YS---------------------------------EDMIPTVGFNMRKVTKGNV 64 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~--~~---------------------------------~~~~~t~~~~~~~~~~~~~ 64 (184)
++|+++|+.++|||||+.+++... .. .+...|+......+...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999997211 00 0111223333444556678
Q ss_pred EEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHH
Q 029978 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDL 142 (184)
Q Consensus 65 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~ 142 (184)
.+.++||||+++|.......+..+|++++|+|+.....-+. .....+..... ..++++|+||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt--~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT--RRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc--HHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHH
Confidence 99999999999987777777899999999999976432111 11122222211 236889999999975321 1122
Q ss_pred HHHcCC--CCcCCCceeEEEeeeCCCCCHHH
Q 029978 143 MEQMGL--KSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 143 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
.+.+.. ........+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222210 00111245799999999999885
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-17 Score=127.99 Aligned_cols=161 Identities=20% Similarity=0.139 Sum_probs=104.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcC------C------------CCCCCCCCccceeeEEeeCCEEEEEEeCCCcccc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATG------G------------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~------~------------~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (184)
.++.++|+++|+.++|||||+++|.+. . .+.+...|+......++..+..+.++||||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 356799999999999999999999621 1 0111333555445556666788999999999998
Q ss_pred hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCCH-hHHH----HHcCCCCc
Q 029978 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALSK-EDLM----EQMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-~~~~----~~~~~~~~ 151 (184)
.......+..+|++++|+|+.... .........++.. .++| +|+|+||+|+.+.... +.+. +.+.....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 777777777899999999987642 2222222222222 4688 5788999999753211 1111 11111111
Q ss_pred CCCceeEEEeeeC---CCCC-------HHHHHHHHHHHhh
Q 029978 152 TDREVCCYMISCK---NSTN-------IDTVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~---~~~~-------v~~l~~~i~~~~~ 181 (184)
....++++++||. ++.| +.+|++.+.+.+.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 1235688888876 4555 7888888887653
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=128.17 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=112.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC-----------------CCCCCCCCccceeeEE---eeCCEEEEEEeCCCccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG-----------------YSEDMIPTVGFNMRKV---TKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~-----------------~~~~~~~t~~~~~~~~---~~~~~~~~~~D~~g~~~ 76 (184)
++--+++|+-+...|||||..+++... .+.+.+-|+......+ +...+.++++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 445678999999999999999998311 1222333333222222 24459999999999999
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCce
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREV 156 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
|.....+.+.-|+++++|+|++..---+..-..+..+. .+..+|.|+||+|++.. +++++..++...+ .....
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~a-dpe~V~~q~~~lF-~~~~~ 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSA-DPERVENQLFELF-DIPPA 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCC-CHHHHHHHHHHHh-cCCcc
Confidence 99999999999999999999986433233222333332 46889999999999875 4455555443211 11233
Q ss_pred eEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 157 CCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+++.+||+.|.|+++++++|++.+.
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhCC
Confidence 6899999999999999999998875
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-17 Score=126.85 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=104.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC---C--CCCCCCccceeeE-----------------Eee-------------
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY---S--EDMIPTVGFNMRK-----------------VTK------------- 61 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~---~--~~~~~t~~~~~~~-----------------~~~------------- 61 (184)
+..++|+++|+..+|||||+..|++-.. . .+..-|+...+.. ...
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 5579999999999999999999985321 1 1122232211110 000
Q ss_pred ---CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 62 ---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 62 ---~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
....+.++|+||+++|.......+..+|++++|+|+.....-...++.+ .++.... -.|+|+|+||+|+.+...
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~lg--i~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIMK--LKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHcC--CCcEEEEEecccccCHHH
Confidence 0236899999999999888778888999999999998631111112222 2222211 246899999999975433
Q ss_pred HhHHHHHcCCC--CcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 139 KEDLMEQMGLK--SITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 139 ~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
.++..+++... .......+++++||++|.|++.|++.|.+.+.
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 33333322210 11124568999999999999999999986554
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.2e-17 Score=127.45 Aligned_cols=149 Identities=23% Similarity=0.316 Sum_probs=108.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEeeCCEEEEEEeCCCcccc------hHhHHHhc--cC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRF------RSMWERYC--RA 87 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~--~~ 87 (184)
+..+|+++|+||+|||||.|++++....-...| |++.....+.....++++.|+||.... ......++ ..
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 356799999999999999999998766555444 555555556677778999999994432 22233333 45
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc----CCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA----LSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
.|+++-|+|++|.+. ++ ....++.+ .+.|++++.|.+|..+. .+.++..+.++. |++++||
T Consensus 82 ~D~ivnVvDAtnLeR--nL-yltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------PVv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLER--NL-YLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------PVVPTVA 146 (653)
T ss_pred CCEEEEEcccchHHH--HH-HHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC--------CEEEEEe
Confidence 799999999997542 11 12233333 47899999999998664 355666666665 6999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
+.|.|++++.+.+.+...
T Consensus 147 ~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 147 KRGEGLEELKRAIIELAE 164 (653)
T ss_pred ecCCCHHHHHHHHHHhcc
Confidence 999999999999987554
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.6e-17 Score=117.38 Aligned_cols=152 Identities=22% Similarity=0.225 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEeeCCEEEEEEeCCCcccc-------hHhHHHhccCCCE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~~~ 90 (184)
..++++|+|++|||||++.+++... ..-...|.......+...+..+++.|+||.-.- ....-+..+.||.
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADl 143 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADL 143 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCE
Confidence 6799999999999999999996433 233445555555667788899999999983221 2455677899999
Q ss_pred EEEEEeCCCCCC-hHHHHHHHHHHhc--CCCCCCC---------------------------------------------
Q 029978 91 IVYVVDAADYDN-LPVSRSELHDLLS--KPSLNGI--------------------------------------------- 122 (184)
Q Consensus 91 ~i~v~d~~~~~~-~~~~~~~~~~~~~--~~~~~~~--------------------------------------------- 122 (184)
+++|+|+..... ...+...+...-- ....+++
T Consensus 144 IiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~d 223 (365)
T COG1163 144 IIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRED 223 (365)
T ss_pred EEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecC
Confidence 999999987554 2233332222100 0000111
Q ss_pred -----------------cEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 123 -----------------PLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 123 -----------------piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
|.+.|.||+|+...+..+.+.+.. ..+++||+.+.|+++|.+.|.+.+.
T Consensus 224 vTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 224 VTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred CcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 999999999998754434333332 4899999999999999999998764
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-17 Score=117.42 Aligned_cols=155 Identities=21% Similarity=0.302 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEeeCCE-EEEEEeCCCcccc-------hHhHHHhccCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVTKGNV-TIKLWDLGGQPRF-------RSMWERYCRAVS 89 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~-------~~~~~~~~~~~~ 89 (184)
..++++|.|++|||||++.+....- ..-..+|.......+...++ .+.+-|.||.-+- ....-..+..++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 4578999999999999999985332 11122333333334444443 3899999994321 223345567899
Q ss_pred EEEEEEeCCCC---CChHHHHHHHHHHhcC-CCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 90 AIVYVVDAADY---DNLPVSRSELHDLLSK-PSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 90 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+++|+|++.. ..++.++..+.++..+ ....+.|.++|+||+|+++.+ +...+++..... ...++++||++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~lq---~~~V~pvsA~~ 351 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRLQ---NPHVVPVSAKS 351 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHcC---CCcEEEeeecc
Confidence 99999999988 7777776666665433 334688999999999996331 222233222111 12599999999
Q ss_pred CCCHHHHHHHHHHH
Q 029978 166 STNIDTVIDWLVKH 179 (184)
Q Consensus 166 ~~~v~~l~~~i~~~ 179 (184)
+.|+.++++.+...
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999887653
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.4e-17 Score=123.46 Aligned_cols=158 Identities=21% Similarity=0.298 Sum_probs=116.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCC----CCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSED----MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+++--|-|.|+...|||||+..|.+...... ..+.++-....++.+ -.+.|.||||+.-|..++.+-.+..|.++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 3456688999999999999999986554322 222333333344433 58999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCC---CC-cCCCceeEEEeeeCCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL---KS-ITDREVCCYMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+.+.+. ++....+..++.+..++|+++++||+|++.. +++.+.+++.. .. ...-..+++++||++|.|
T Consensus 230 LVVAadDG-----VmpQT~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 230 LVVAADDG-----VMPQTLEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEEccCC-----ccHhHHHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 99999873 3344455555666689999999999998764 44555554432 21 223467899999999999
Q ss_pred HHHHHHHHHHHhh
Q 029978 169 IDTVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~~~ 181 (184)
++.|-+.++-...
T Consensus 304 l~~L~eaill~Ae 316 (683)
T KOG1145|consen 304 LDLLEEAILLLAE 316 (683)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999876543
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-16 Score=107.32 Aligned_cols=167 Identities=28% Similarity=0.355 Sum_probs=109.4
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhcc---CC
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR---AV 88 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~ 88 (184)
+.+.....-.|.++|+.+||||+|.-++..+.....+....+ ....+..+.-.+.++|.||+++.+.....++. .+
T Consensus 31 ~~~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep-n~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~a 109 (238)
T KOG0090|consen 31 KLFRRSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP-NEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSA 109 (238)
T ss_pred HHHhhccCCcEEEEecCCCCceeeeeehhcCCccCeeeeecc-ceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccc
Confidence 333344557899999999999999999998855544332222 11222223334889999999998876666665 78
Q ss_pred CEEEEEEeCCCCC-ChHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCccCcCCHhHHHHHcC------------------
Q 029978 89 SAIVYVVDAADYD-NLPVSRSELHDLLSKP--SLNGIPLLVLGNKIDKPEALSKEDLMEQMG------------------ 147 (184)
Q Consensus 89 ~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~~~~~~~~~~~~------------------ 147 (184)
-+++||+|+.... .....-+.+-+++... +...+|+.+++||.|+.-...++.+.+.+.
T Consensus 110 kaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ 189 (238)
T KOG0090|consen 110 KAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISD 189 (238)
T ss_pred eeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 8999999996533 3333334444444332 457889999999999965544332222110
Q ss_pred -------------CCC----cCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 148 -------------LKS----ITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 148 -------------~~~----~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
..+ .......+.++|++++ +++++-+|+.+++
T Consensus 190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 010 1113467889999999 8999999998764
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=116.78 Aligned_cols=155 Identities=24% Similarity=0.325 Sum_probs=95.9
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCC------CCCCCCccceeeEE-------------------e-eCCEEEEEEeCCCc-
Q 029978 22 LSLIGLQNAGKTSLVNVIATGGYS------EDMIPTVGFNMRKV-------------------T-KGNVTIKLWDLGGQ- 74 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~~~~------~~~~~t~~~~~~~~-------------------~-~~~~~~~~~D~~g~- 74 (184)
|+++|.|++|||||++++++.... ....|+.+...... + ...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999977643 12223333222210 1 13367999999997
Q ss_pred ---ccchHhHH---HhccCCCEEEEEEeCCCC-------------CChHHHH-------HH--------HHHH-------
Q 029978 75 ---PRFRSMWE---RYCRAVSAIVYVVDAADY-------------DNLPVSR-------SE--------LHDL------- 113 (184)
Q Consensus 75 ---~~~~~~~~---~~~~~~~~~i~v~d~~~~-------------~~~~~~~-------~~--------~~~~------- 113 (184)
++...+-. ..++.+|++++|+|++.. +....+. .| +..+
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333323 358999999999999731 1111110 00 0000
Q ss_pred -------------------------hcC-C--------------------CCCCCcEEEEeeCCCccCcCCHhHHHHHcC
Q 029978 114 -------------------------LSK-P--------------------SLNGIPLLVLGNKIDKPEALSKEDLMEQMG 147 (184)
Q Consensus 114 -------------------------~~~-~--------------------~~~~~piilv~nK~D~~~~~~~~~~~~~~~ 147 (184)
+.. . ....+|+|+|+||+|+... ++..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~---~~~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA---ENNISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh---HHHHHHHH
Confidence 000 0 0234699999999997543 33333222
Q ss_pred CCCcCCCceeEEEeeeCCCCCHHHHHH-HHHHHhhh
Q 029978 148 LKSITDREVCCYMISCKNSTNIDTVID-WLVKHSKS 182 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~-~i~~~~~~ 182 (184)
.. ....+++++||+.+.+++++.+ .+.+++.+
T Consensus 238 ~~---~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 238 LK---YPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred hh---CCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 11 1244699999999999999998 68888753
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-16 Score=128.47 Aligned_cols=144 Identities=18% Similarity=0.134 Sum_probs=95.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--C------CC------------CCCCCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--Y------SE------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--~------~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
.+-.+|+|+|++++|||||+++|+... . .. ....|+......+.+.+..+.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 344689999999999999999997311 1 00 122333444556777889999999999998
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCce
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREV 156 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+.......++.+|++++|+|+.+....+. ...+..+ .. .++|+++|+||+|+.... .++..+.+..........
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~ 161 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQA-NR---YEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLGANAVP 161 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHH-HH---cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCcee
Confidence 88888889999999999999987544332 2223322 22 468999999999998643 233333332211112222
Q ss_pred eEEEeeeCCC
Q 029978 157 CCYMISCKNS 166 (184)
Q Consensus 157 ~~~~~Sa~~~ 166 (184)
..+++|+..+
T Consensus 162 ~~ipis~~~~ 171 (689)
T TIGR00484 162 IQLPIGAEDN 171 (689)
T ss_pred EEeccccCCC
Confidence 3556666554
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.1e-17 Score=120.16 Aligned_cols=153 Identities=20% Similarity=0.168 Sum_probs=103.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc---------------------C------------CCCCCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT---------------------G------------GYSEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~---------------------~------------~~~~~~~~t~~~~~~~~~~~~ 63 (184)
+..++++++|+..+|||||+-+|+- . ....+.+-|+......+....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 5679999999999999999999981 0 112233345555555677777
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC---C--hHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---N--LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
+.+.++|+||+.+|-...-.-...+|+.|+|+|+.+.+ + .....+....+..... -..+|+++||+|..+-..
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~wde 162 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEcccccccCH
Confidence 89999999999999888888889999999999998763 1 1111122222222211 346889999999986321
Q ss_pred ------HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 139 ------KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 139 ------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
..++...+.........++|+++|+..|.|+.+
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 122222222222233357899999999999754
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-19 Score=119.11 Aligned_cols=161 Identities=24% Similarity=0.284 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--Ee---eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+++.++|..|+|||+++.++....+..-+..|++..... .. ..-+++++||.+||+++..+..-+++.+++..+|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 789999999999999999999888887788888755432 22 2336789999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhc---CCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLS---KPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~---~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
||+++.-.|....+|..++-. ......+|+++..||+|+..... .+....+.....-+....++++|+|.+.|+++
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~-~~~~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK-NEATRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhh-hhhHHHHHHHHhccCccceeeeccccccChhH
Confidence 999999999999899887743 34556789999999999876422 11112222211222334689999999999999
Q ss_pred HHHHHHHHhh
Q 029978 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
.-+.+++.+.
T Consensus 185 a~r~lVe~~l 194 (229)
T KOG4423|consen 185 AQRELVEKIL 194 (229)
T ss_pred HHHHHHHHHH
Confidence 9999887764
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=120.10 Aligned_cols=154 Identities=20% Similarity=0.240 Sum_probs=113.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcC-----------------CCCCCCCCCccceeeE-----EeeCCEEEEEEeCCCccc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATG-----------------GYSEDMIPTVGFNMRK-----VTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~-----------------~~~~~~~~t~~~~~~~-----~~~~~~~~~~~D~~g~~~ 76 (184)
--+.+|+-+-..|||||..+++.. ....+.+-|+...... .++..+.++++|||||.+
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 356789999999999999999831 1223333444422222 233569999999999999
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCCCCcCC
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLKSITD 153 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~~ 153 (184)
|.-...+.+..|.++++++|++..-.-+.+-..+..+- .+.-+|-|+||+|++..+. .+++.+.+++...
T Consensus 89 FsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~-- 161 (603)
T COG0481 89 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS-- 161 (603)
T ss_pred eEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc--
Confidence 98888888899999999999997544444444444443 4678999999999987643 3456666666543
Q ss_pred CceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 154 REVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
..+.+|||+|.||+++++.|++.+..
T Consensus 162 ---dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 162 ---DAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred ---hheeEecccCCCHHHHHHHHHhhCCC
Confidence 37889999999999999999988753
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-16 Score=100.89 Aligned_cols=103 Identities=23% Similarity=0.273 Sum_probs=69.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccc---------hHhHHHhccCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF---------RSMWERYCRAV 88 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~~ 88 (184)
+|+++|.+|+|||||++++++... ......|.......+...+..+.++||||.... .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 689999999999999999997432 233344444444455667788899999995321 11233344889
Q ss_pred CEEEEEEeCCCCCChHHHHHHH-HHHhcCCCCCCCcEEEEeeC
Q 029978 89 SAIVYVVDAADYDNLPVSRSEL-HDLLSKPSLNGIPLLVLGNK 130 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~piilv~nK 130 (184)
|++++|+|..++ .......+ ..+ . .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~--~~~~~~~~~~~l----~-~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNP--ITEDDKNILREL----K-NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSH--SHHHHHHHHHHH----H-TTSEEEEEEES
T ss_pred CEEEEEEECCCC--CCHHHHHHHHHH----h-cCCCEEEEEcC
Confidence 999999997762 12222222 333 2 57999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-15 Score=112.09 Aligned_cols=155 Identities=23% Similarity=0.319 Sum_probs=108.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEeeC-CEEEEEEeCCCcccc--hHhHH------Hhcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPRF--RSMWE------RYCR 86 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~--~~~~~------~~~~ 86 (184)
.-..|+++|=.|+|||||+|.+++... ......|........... ...+.+-||.|.-+. ..+.. .-..
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~ 270 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK 270 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence 347899999999999999999996554 344566777667666555 478899999994321 11111 2246
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.+|.++.|+|++++.....+... ..++.......+|+|+|.||+|+..... ....+.... ...+.+||++|
T Consensus 271 ~aDlllhVVDaSdp~~~~~~~~v-~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~~-----~~~v~iSA~~~ 341 (411)
T COG2262 271 EADLLLHVVDASDPEILEKLEAV-EDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERGS-----PNPVFISAKTG 341 (411)
T ss_pred cCCEEEEEeecCChhHHHHHHHH-HHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhhcC-----CCeEEEEeccC
Confidence 78999999999998544444333 3344444446699999999999876533 222221111 14788999999
Q ss_pred CCHHHHHHHHHHHhh
Q 029978 167 TNIDTVIDWLVKHSK 181 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~ 181 (184)
.|++.|.+.|...+.
T Consensus 342 ~gl~~L~~~i~~~l~ 356 (411)
T COG2262 342 EGLDLLRERIIELLS 356 (411)
T ss_pred cCHHHHHHHHHHHhh
Confidence 999999999998876
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.3e-16 Score=114.91 Aligned_cols=130 Identities=22% Similarity=0.321 Sum_probs=96.7
Q ss_pred cceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC----------CChHHHHHHHHHHhcCCCCCCC
Q 029978 53 GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY----------DNLPVSRSELHDLLSKPSLNGI 122 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 122 (184)
+.....+..+++.+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....+..++......++
T Consensus 150 Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~ 229 (317)
T cd00066 150 GIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANT 229 (317)
T ss_pred CeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCC
Confidence 333444556678899999999999999999999999999999999985 3456666777788877666889
Q ss_pred cEEEEeeCCCccCc------------------CCHhHHHHHcC-----CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 123 PLLVLGNKIDKPEA------------------LSKEDLMEQMG-----LKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 123 piilv~nK~D~~~~------------------~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
|+++++||.|+..+ .+.++..+-+. ......+.+..+.++|.+-.+++.+|+.+.+.
T Consensus 230 pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~ 309 (317)
T cd00066 230 SIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDI 309 (317)
T ss_pred CEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHH
Confidence 99999999996542 11222222111 11112355677789999999999999999888
Q ss_pred hhh
Q 029978 180 SKS 182 (184)
Q Consensus 180 ~~~ 182 (184)
+.+
T Consensus 310 i~~ 312 (317)
T cd00066 310 ILQ 312 (317)
T ss_pred HHH
Confidence 764
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-17 Score=111.07 Aligned_cols=121 Identities=26% Similarity=0.305 Sum_probs=70.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE-eeCCEEEEEEeCCCcccchHhHHHh---ccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV-TKGNVTIKLWDLGGQPRFRSMWERY---CRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~---~~~~~~~i~v 94 (184)
.-.|+++|++|+|||+|..+|..+................+ ......+.++|+||+++.+...... ...+.++|||
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfv 82 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFV 82 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEE
Confidence 44689999999999999999998855443332211111111 1233468999999999987655544 7889999999
Q ss_pred EeCCCC-CChHHHHHHHHHHhcC--CCCCCCcEEEEeeCCCccCcCCH
Q 029978 95 VDAADY-DNLPVSRSELHDLLSK--PSLNGIPLLVLGNKIDKPEALSK 139 (184)
Q Consensus 95 ~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~ 139 (184)
+|++.. ..+...-+.+..++.. .....+|+++++||.|+.....+
T Consensus 83 vDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~ 130 (181)
T PF09439_consen 83 VDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPP 130 (181)
T ss_dssp EETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---H
T ss_pred EeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCH
Confidence 999741 2223333333333221 22368999999999999776443
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-16 Score=126.47 Aligned_cols=145 Identities=19% Similarity=0.126 Sum_probs=96.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcC--CC------C------------CCCCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATG--GY------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~--~~------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
..+-.+|+|+|++++|||||+++++.. .. . .+...|+......+.+.+..+.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 345578999999999999999999731 10 1 123345555556677888999999999999
Q ss_pred cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCc
Q 029978 76 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDRE 155 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
++.......++.+|++++|+|+.....-+. ...+..+.. .++|+|+++||+|+.... .++..+++.........
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~----~~~p~iv~iNK~D~~~~~-~~~~~~~i~~~l~~~~~ 158 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK----YGVPRIVFVNKMDRIGAD-FFRSVEQIKDRLGANAV 158 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCce
Confidence 888888899999999999999987532221 122222222 468999999999998643 33343433222111122
Q ss_pred eeEEEeeeCCC
Q 029978 156 VCCYMISCKNS 166 (184)
Q Consensus 156 ~~~~~~Sa~~~ 166 (184)
...+++|+..+
T Consensus 159 ~~~iPis~~~~ 169 (691)
T PRK12739 159 PIQLPIGAEDD 169 (691)
T ss_pred eEEeccccccc
Confidence 23455666543
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-15 Score=105.60 Aligned_cols=162 Identities=15% Similarity=0.062 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC-CC---CCCCccceeeEEeeCCEEEEEEeCCCcccc-------hHh----HHHh
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS-ED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSM----WERY 84 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~-~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~----~~~~ 84 (184)
++|+++|.+|+|||||+|.+++.... .. ...|...........+..+.++||||.... ... ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 47999999999999999999976432 22 233444444455567789999999994332 111 1222
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccCcCCHhHHHHHcCC--CCc-CCCceeEEE
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEALSKEDLMEQMGL--KSI-TDREVCCYM 160 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~ 160 (184)
..+.|++++|+++.... ......+..+..... ..-.++++|.|+.|.......++....... ... ....-.++.
T Consensus 81 ~~g~~~illVi~~~~~t--~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFT--EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcC--HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 46789999999987622 111222222222111 122588999999998765443333222210 000 000111222
Q ss_pred e-----eeCCCCCHHHHHHHHHHHhhhc
Q 029978 161 I-----SCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 161 ~-----Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
. |+.++.++++|++.|.+.+.++
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 2 3567889999999999988763
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-15 Score=113.03 Aligned_cols=166 Identities=17% Similarity=0.145 Sum_probs=109.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCccc-c--------hHhHHH
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-F--------RSMWER 83 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-~--------~~~~~~ 83 (184)
.+.+++|+|+|+||+|||||+|.|.+.+. .+..+.|.+.....++...+.+.+.||+|..+ - ......
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 36679999999999999999999997654 46666677666666778889999999999543 1 122344
Q ss_pred hccCCCEEEEEEeCC--CCCChHHHHHHHHHHhcC-----CCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCc
Q 029978 84 YCRAVSAIVYVVDAA--DYDNLPVSRSELHDLLSK-----PSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDRE 155 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~--~~~~~~~~~~~~~~~~~~-----~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~ 155 (184)
.+..+|++++|+|+. ..++-..+...+...... .+....|+|++.||+|+..... .......+-...-....
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF 424 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence 577899999999993 333333333333332211 2224579999999999976411 11100000000111122
Q ss_pred eeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 156 VCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 156 ~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
....++||+++.|++.|.+.+.+.+.
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHH
Confidence 34556999999999999999987754
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-15 Score=122.72 Aligned_cols=107 Identities=23% Similarity=0.224 Sum_probs=78.5
Q ss_pred EcCCCCChHHHHHHHHcCCC--------------------CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHh
Q 029978 25 IGLQNAGKTSLVNVIATGGY--------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY 84 (184)
Q Consensus 25 iG~~g~GKStli~~l~~~~~--------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 84 (184)
+|++++|||||+++|+...- ..+...|+......+.+.++.+.+|||||+.++.......
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 69999999999999963210 0112334444555677788999999999999888888888
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
++.+|++++++|++........ ..+..+.. .++|+++|+||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 9999999999999876544332 22232222 46899999999998754
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-15 Score=116.67 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=72.1
Q ss_pred EEEEEeCCCcccc-----hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-
Q 029978 65 TIKLWDLGGQPRF-----RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS- 138 (184)
Q Consensus 65 ~~~~~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~- 138 (184)
.+.+.||||.... .......+..+|++++|+|.....+... ......+.... ...|+++|+||+|+.+...
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCcccc
Confidence 5778999996431 2234457899999999999987433222 22233332211 2359999999999864322
Q ss_pred -HhHHHHHcCCC--CcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 139 -KEDLMEQMGLK--SITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 139 -~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
.+.+.+.+... ........++++||+.|.|++.+++.|.+
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 34444432211 11223457999999999999999999986
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=114.56 Aligned_cols=128 Identities=19% Similarity=0.288 Sum_probs=95.2
Q ss_pred eeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC----------ChHHHHHHHHHHhcCCCCCCCcE
Q 029978 55 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD----------NLPVSRSELHDLLSKPSLNGIPL 124 (184)
Q Consensus 55 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~pi 124 (184)
....+...+..+.+||.+|+...+..|..++..++++++|+|+++.+ .+......+..++......++|+
T Consensus 175 ~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~pi 254 (342)
T smart00275 175 QETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSI 254 (342)
T ss_pred EEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcE
Confidence 33345556678999999999999999999999999999999999753 46666677888887777788999
Q ss_pred EEEeeCCCccCcC-----------------CHhHHHHHcC-----CCCc-CCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 125 LVLGNKIDKPEAL-----------------SKEDLMEQMG-----LKSI-TDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 125 ilv~nK~D~~~~~-----------------~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
++++||.|+.... +.++..+-+. .... ..+.+..+.++|.+-.++..+|+.+.+.+.
T Consensus 255 il~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~ 334 (342)
T smart00275 255 ILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIIL 334 (342)
T ss_pred EEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHH
Confidence 9999999985431 1222222111 1111 234567778999999999999999888765
Q ss_pred h
Q 029978 182 S 182 (184)
Q Consensus 182 ~ 182 (184)
+
T Consensus 335 ~ 335 (342)
T smart00275 335 Q 335 (342)
T ss_pred H
Confidence 4
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=124.36 Aligned_cols=144 Identities=18% Similarity=0.132 Sum_probs=95.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc--CCC------C------------CCCCCCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT--GGY------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~--~~~------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
.+-.+|+|+|++++|||||+++|+. +.. . .+...|+......+.+.+..++++||||+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 3446899999999999999999973 211 1 1222344444455677889999999999998
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCce
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREV 156 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+.......++.+|++++|+|+...-..+. ...+..+.. .++|+|+++||+|+.... ..+..+.+..........
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~~~~~~ 161 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLGANPVP 161 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCeee
Confidence 88888888899999999999876432222 222232222 468999999999998643 344444443222222233
Q ss_pred eEEEeeeCCC
Q 029978 157 CCYMISCKNS 166 (184)
Q Consensus 157 ~~~~~Sa~~~ 166 (184)
..+++|+..+
T Consensus 162 ~~ipisa~~~ 171 (693)
T PRK00007 162 IQLPIGAEDD 171 (693)
T ss_pred EEecCccCCc
Confidence 4566666655
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=109.80 Aligned_cols=159 Identities=23% Similarity=0.283 Sum_probs=103.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEe-eCCEEEEEEeCCCccc-------chHhHHHhccCCCE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVT-KGNVTIKLWDLGGQPR-------FRSMWERYCRAVSA 90 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~~~ 90 (184)
.|+++|.|++|||||++.+....- ..-+..|.......+. ...-.+.+-|.||.-. .....-..+..+.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 478999999999999999985432 2223344444443333 3445689999998322 12233455677899
Q ss_pred EEEEEeCCCCCC---hHHHHHHHHHHhcC-CCCCCCcEEEEeeCCCccCc-CCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 91 IVYVVDAADYDN---LPVSRSELHDLLSK-PSLNGIPLLVLGNKIDKPEA-LSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 91 ~i~v~d~~~~~~---~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++.|+|++..+. .........++..+ ....++|.++|+||+|+... +..++..+.+.....+ ...++ +||.+
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~--~~~~~-ISa~t 317 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGW--EVFYL-ISALT 317 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCC--Cccee-eehhc
Confidence 999999986653 44444444555443 44468999999999996543 3333333333322111 11222 99999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 029978 166 STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~~ 182 (184)
+.|+++|...+.+++.+
T Consensus 318 ~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 318 REGLDELLRALAELLEE 334 (369)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 99999999999988765
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.5e-16 Score=110.37 Aligned_cols=157 Identities=21% Similarity=0.333 Sum_probs=94.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCC---CCCCccceeeEEe-eCCEEEEEEeCCCcccchH-----hHHHhccCCCEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSED---MIPTVGFNMRKVT-KGNVTIKLWDLGGQPRFRS-----MWERYCRAVSAI 91 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~---~~~t~~~~~~~~~-~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~~~~ 91 (184)
||+++|+.||||||+.+.+..+-.+.+ ..+|......++. .+.+.+++||.||+..+.. .....++.++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 789999999999999999986554433 3467666666664 5678999999999976543 467778999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcC--CCCCCCcEEEEeeCCCccCcCCHhHHHHHcCC------CCcCCCceeEEEeee
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSK--PSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL------KSITDREVCCYMISC 163 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~Sa 163 (184)
|+|+|+...+ +......+...... ...+++.+.+.++|+|+..+...++..+.... .......+.++.||.
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999998654 33333443332211 12368999999999999775433332222110 001111467999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 029978 164 KNSTNIDTVIDWLVKH 179 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~ 179 (184)
.+. .+-+-+..|++.
T Consensus 160 ~D~-Sly~A~S~Ivq~ 174 (232)
T PF04670_consen 160 WDE-SLYEAWSKIVQK 174 (232)
T ss_dssp TST-HHHHHHHHHHHT
T ss_pred cCc-HHHHHHHHHHHH
Confidence 884 455555555544
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.9e-16 Score=116.83 Aligned_cols=177 Identities=18% Similarity=0.157 Sum_probs=121.1
Q ss_pred hHHHHHHHHHhhc--cCCceEEEEEcCCCCChHHHHHHHHcCCCCCC--CCCCccceeeEEeeCCEEEEEEeCCCcccc-
Q 029978 3 LWEAFLNWLRSLF--FKQEMELSLIGLQNAGKTSLVNVIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF- 77 (184)
Q Consensus 3 ~~~~~~~~~~~~~--~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~- 77 (184)
+|+...+++.+++ ..+.-.++++|-|++|||||++.+........ ..+|...-..+++.....++++||||.-+.
T Consensus 150 yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~p 229 (620)
T KOG1490|consen 150 YLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRP 229 (620)
T ss_pred HHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcc
Confidence 6788889998888 45668899999999999999999987655433 344555555667777789999999994321
Q ss_pred ---hH-----hHHHhccCCCEEEEEEeCCCCCChHHHH--HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC
Q 029978 78 ---RS-----MWERYCRAVSAIVYVVDAADYDNLPVSR--SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG 147 (184)
Q Consensus 78 ---~~-----~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~ 147 (184)
++ .+....+--.+++++.|++....+.-.. +.+..+. ....+.|.|+|+||+|....++.++-.+++-
T Consensus 230 lEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIK--pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll 307 (620)
T KOG1490|consen 230 EEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIK--PLFANKVTILVLNKIDAMRPEDLDQKNQELL 307 (620)
T ss_pred hhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhH--HHhcCCceEEEeecccccCccccCHHHHHHH
Confidence 11 1223345556899999998766544333 3344442 2235899999999999987655433332222
Q ss_pred CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 148 LKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
........++++++|+.+..||-++.......+.
T Consensus 308 ~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 308 QTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred HHHHhccCceEEEecccchhceeeHHHHHHHHHH
Confidence 1122223467999999999999887766665543
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.1e-15 Score=110.63 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=69.2
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh-
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE- 140 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~- 140 (184)
..+.+.++||+|....... ....+|.++++.+....+.++... ..++. +..++|+||+|+......+
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHH
Confidence 3568999999997643322 355699999997644433333322 22222 2348999999987654333
Q ss_pred ---HHHHHcCCCCcC--CCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 141 ---DLMEQMGLKSIT--DREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 141 ---~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
++.+.+.+.... ....+++.+||+++.|+++|++.|.++..
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 333333332211 12357999999999999999999998754
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=103.92 Aligned_cols=166 Identities=17% Similarity=0.221 Sum_probs=106.3
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCC--CCCcc-ceeeEEeeCCEEEEEEeCCCccc-------chHhHH
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDM--IPTVG-FNMRKVTKGNVTIKLWDLGGQPR-------FRSMWE 82 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~ 82 (184)
.+..++++++.+.|..|+|||||+|++..+...+.. ..+.. ..........-.+.+||+||-++ ++....
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHH
Confidence 344567899999999999999999999965443222 21111 11111222334699999999554 566777
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC------------CHhHHHHHcCC--
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL------------SKEDLMEQMGL-- 148 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~------------~~~~~~~~~~~-- 148 (184)
.++...|.++++.++.+++--.. ...+.++.... -+.|+++++|.+|....- ..++..+....
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred HHhhhccEEEEeccCCCccccCC-HHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 88899999999999988652222 23344443322 248999999999985431 11111111110
Q ss_pred CCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 149 KSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 149 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
......--|++..|...++|++.+...++..+.
T Consensus 190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 000111236888889999999999999998764
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=111.08 Aligned_cols=79 Identities=25% Similarity=0.409 Sum_probs=53.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC-CC-CCC----ccceeeEE-------------------e-eCCEEEEEEeCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSE-DM-IPT----VGFNMRKV-------------------T-KGNVTIKLWDLGG 73 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~-~~-~~t----~~~~~~~~-------------------~-~~~~~~~~~D~~g 73 (184)
++|+|+|.|++|||||++++++..+.. .+ ..| .+...... + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999776542 22 222 22211100 0 1236789999999
Q ss_pred c----ccchHh---HHHhccCCCEEEEEEeCC
Q 029978 74 Q----PRFRSM---WERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 74 ~----~~~~~~---~~~~~~~~~~~i~v~d~~ 98 (184)
. +....+ ....++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 222222 333488999999999997
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=109.82 Aligned_cols=159 Identities=24% Similarity=0.332 Sum_probs=108.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCC--CCC----------------CCCCCccceeeEEeeCCEEEEEEeCCCcccchHh
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGG--YSE----------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
--+|+|+-+...|||||+..++..+ |.. +..-|+-..-.-+.+.+.++++.||||+.+|.-.
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3579999999999999999999432 211 1111111111125677899999999999999999
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC----CCC-cCCCc
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG----LKS-ITDRE 155 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~----~~~-~~~~~ 155 (184)
..+.+.=.|.+++++|+.+.. ...-+..+...+. .+.+-|+|+||+|.+.....+-+.+-.. +.. ..+..
T Consensus 85 VERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 999999999999999998642 2223333343333 3567789999999987643222222111 111 11245
Q ss_pred eeEEEeeeCCCC----------CHHHHHHHHHHHhhh
Q 029978 156 VCCYMISCKNST----------NIDTVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~~~~----------~v~~l~~~i~~~~~~ 182 (184)
+|++..|+++|. ++..||+.|++++..
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 789999999863 689999999998764
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=91.53 Aligned_cols=138 Identities=15% Similarity=0.157 Sum_probs=90.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCC----cccchHhHHHhccCCCEEEEEEe
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----QPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+++++|..|+|||||.+++.+.....+..+. +++.. =..+|||| +..+++........+|+++++-+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQA-------ve~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQA-------VEFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccce-------eeccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 7899999999999999999854322211111 11110 11459998 33444445555678899999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
++++++--.. . .......|+|=|+||.|+.+..+.+...+.+.+... -++|++|+.++.|++++++.+
T Consensus 74 and~~s~f~p-----~---f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa----~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 74 ANDPESRFPP-----G---FLDIGVKKVIGVVTKADLAEDADISLVKRWLREAGA----EPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred ccCccccCCc-----c---cccccccceEEEEecccccchHhHHHHHHHHHHcCC----cceEEEeccCcccHHHHHHHH
Confidence 9987642211 1 112245679999999999865444433333332221 159999999999999999988
Q ss_pred HHH
Q 029978 177 VKH 179 (184)
Q Consensus 177 ~~~ 179 (184)
...
T Consensus 142 ~~~ 144 (148)
T COG4917 142 ASL 144 (148)
T ss_pred Hhh
Confidence 653
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-15 Score=107.88 Aligned_cols=161 Identities=18% Similarity=0.194 Sum_probs=109.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC---CC--CCCCCCccceeeE--------------------E--e----eCCEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG---YS--EDMIPTVGFNMRK--------------------V--T----KGNVT 65 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~---~~--~~~~~t~~~~~~~--------------------~--~----~~~~~ 65 (184)
+..++|+.+|+...|||||...+.+-- +. -+..-|+...+.. . . .--.+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 678999999999999999999998311 11 1111122111100 0 0 01146
Q ss_pred EEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHH--HHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHH
Q 029978 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSEL--HDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLM 143 (184)
Q Consensus 66 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~ 143 (184)
+.|.|.||++-......+-..-.|++++|++++.+..=..-.+.+ .++.. -..+++|-||+|+...+.+.+..
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig-----ik~iiIvQNKIDlV~~E~AlE~y 162 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG-----IKNIIIVQNKIDLVSRERALENY 162 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc-----cceEEEEecccceecHHHHHHHH
Confidence 899999999988877666667779999999998765433323322 23332 25689999999998875555555
Q ss_pred HHcCC--CCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 144 EQMGL--KSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 144 ~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+++.. +.....+.|++++||..+.|++.|++.|.+.+..
T Consensus 163 ~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 163 EQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 54432 2334557799999999999999999999998763
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-15 Score=108.29 Aligned_cols=116 Identities=20% Similarity=0.102 Sum_probs=72.9
Q ss_pred EEEEEeCCCcccch---HhHHHh---ccC--CCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 65 TIKLWDLGGQPRFR---SMWERY---CRA--VSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 65 ~~~~~D~~g~~~~~---~~~~~~---~~~--~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
.+.+||+||+.... .....+ +.. .+++++++|+........... ++....... ..++|+++|+||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 68899999976532 222222 222 789999999976443333222 222211111 14789999999999987
Q ss_pred cCCHhHHHHHcCC--------CC-----------------cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 136 ALSKEDLMEQMGL--------KS-----------------ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 136 ~~~~~~~~~~~~~--------~~-----------------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
....++..+.+.. .. ......+++++|++++.|+++++++|.+.+.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 6554444333321 00 0112346899999999999999999988764
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=106.13 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=101.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC-----------------------------------CCCCCCCCccceeeEEee
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG-----------------------------------YSEDMIPTVGFNMRKVTK 61 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~-----------------------------------~~~~~~~t~~~~~~~~~~ 61 (184)
+..++.+-+|...-||||||-+|+.+. .+.+.+-|+...+..+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 456889999999999999999998221 123334455566666667
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--H
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--K 139 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~ 139 (184)
.+.++.+.||||+++|-..+..-...||++|+++|+.. .....-+....+..... =..+++++||+|+.+... -
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLG--IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLG--IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhC--CcEEEEEEeeecccccCHHHH
Confidence 78899999999999998888888899999999999964 33322222222222211 246899999999987533 2
Q ss_pred hHHHHHcCCC--CcCCCceeEEEeeeCCCCCHH
Q 029978 140 EDLMEQMGLK--SITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 140 ~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+++.+++... ........++|+||+.|.||-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 2332222100 011123369999999999874
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=104.79 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=68.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCC----------CCCCccceee--EEeeC--CEEEEEEeCCCcccchH----
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSED----------MIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRS---- 79 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~----------~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~---- 79 (184)
..++|+++|++|+|||||++++.+..+... ..+|...... .+... .+.+.+|||||..+...
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 358999999999999999999998765433 2333332222 22222 36799999999432210
Q ss_pred -----------------hHH-----Hhcc--CCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 80 -----------------MWE-----RYCR--AVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 80 -----------------~~~-----~~~~--~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
... ..+. .+|+++++++.+.. ...... ..+..+. ..+|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcC
Confidence 000 1222 46778888887642 222221 2222222 258999999999996
Q ss_pred C
Q 029978 135 E 135 (184)
Q Consensus 135 ~ 135 (184)
.
T Consensus 157 ~ 157 (276)
T cd01850 157 T 157 (276)
T ss_pred C
Confidence 5
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.9e-14 Score=115.54 Aligned_cols=113 Identities=21% Similarity=0.229 Sum_probs=79.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC---------------CCCC---CCCCCccceee----EEeeCCEEEEEEeCCCcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG---------------GYSE---DMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~---------------~~~~---~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~ 75 (184)
.-.+|+++|+.++|||||+++++.. .+.. +...|+..... .+++.++.+++|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 3479999999999999999999742 1111 12234433222 245677999999999999
Q ss_pred cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 76 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
++.......++.+|++++|+|+......+. ...+..... .+.|+++|+||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 998888889999999999999976422221 122222222 4578899999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.4e-14 Score=99.45 Aligned_cols=143 Identities=11% Similarity=0.128 Sum_probs=84.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..++..|+++|++|+|||||++.+.+...........+. .......+..+.++||||.. .........+|++++++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllvi 111 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI---NAMIDIAKVADLVLLLI 111 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH---HHHHHHHHhcCEEEEEE
Confidence 355688999999999999999999854222111111111 11122356788999999864 22234467899999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCccCcCC-HhHHHHHcCCCCc--CCCceeEEEeeeCCCC
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDKPEALS-KEDLMEQMGLKSI--TDREVCCYMISCKNST 167 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~ 167 (184)
|++...... ...+..+... .+.|. ++|+||+|+.+... .++..+.+..... .....+++++||++..
T Consensus 112 Da~~~~~~~--~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 112 DASFGFEME--TFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred ecCcCCCHH--HHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 997643322 2222333222 34675 45999999974321 2233322221111 1234579999999863
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-13 Score=114.31 Aligned_cols=145 Identities=19% Similarity=0.202 Sum_probs=90.8
Q ss_pred ChHHHHHHHHcCCCCCCC----CCCccceeeEEeeC-----------C-----EEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 31 GKTSLVNVIATGGYSEDM----IPTVGFNMRKVTKG-----------N-----VTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 31 GKStli~~l~~~~~~~~~----~~t~~~~~~~~~~~-----------~-----~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
+||||+.++.+......- .+.++....+.+.. . -.+.+|||||++.+..+.......+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 599999999865543221 12222222222210 0 138999999999998888888889999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC------------------HhHHH---------
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS------------------KEDLM--------- 143 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~------------------~~~~~--------- 143 (184)
+++|+|+++.- .........++.. .++|+++|+||+|+.+... .+++.
T Consensus 553 vlLVVDa~~Gi--~~qT~e~I~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~ 627 (1049)
T PRK14845 553 AVLVVDINEGF--KPQTIEAINILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK 627 (1049)
T ss_pred EEEEEECcccC--CHhHHHHHHHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence 99999998632 1111111122222 3689999999999964211 01111
Q ss_pred -HHcCCCC-------cCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 144 -EQMGLKS-------ITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 144 -~~~~~~~-------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
...+... ......+++++||++|.|+++|++.+....
T Consensus 628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 1112111 123467899999999999999999886543
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=113.66 Aligned_cols=126 Identities=23% Similarity=0.245 Sum_probs=83.5
Q ss_pred HHHHHHHHhhccC--CceEEEEEcCCCCChHHHHHHHHcCC-C-CCC----------------CCCCccceeeEE----e
Q 029978 5 EAFLNWLRSLFFK--QEMELSLIGLQNAGKTSLVNVIATGG-Y-SED----------------MIPTVGFNMRKV----T 60 (184)
Q Consensus 5 ~~~~~~~~~~~~~--~~~~i~iiG~~g~GKStli~~l~~~~-~-~~~----------------~~~t~~~~~~~~----~ 60 (184)
++..+++.++..+ +-.+|+++|+.++|||||+.+++... . ... ..-|+......+ +
T Consensus 4 ~~~~~~~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~ 83 (731)
T PRK07560 4 KKMVEKILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYE 83 (731)
T ss_pred hHHHHHHHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEec
Confidence 4455566555444 23579999999999999999998421 1 100 011222222222 2
Q ss_pred eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
..++.++++||||+.++.......++.+|++++|+|+......+ ....+..... .+.|.|+++||+|...
T Consensus 84 ~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 84 GKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred CCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhhc
Confidence 24688999999999999888889999999999999987643222 2223333222 2468899999999863
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=102.71 Aligned_cols=134 Identities=19% Similarity=0.349 Sum_probs=99.6
Q ss_pred CCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCC----------hHHHHHHHHHHhcCCC
Q 029978 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN----------LPVSRSELHDLLSKPS 118 (184)
Q Consensus 49 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------~~~~~~~~~~~~~~~~ 118 (184)
.+|.|.....+..++..+.++|.+||..-+..|...+.++++++||+++++.+- +.+....+..+.+...
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 345555666677788899999999999889999999999999999999997642 3344456778888888
Q ss_pred CCCCcEEEEeeCCCccCcC-----------------CHhHHHHHcC-----CCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 119 LNGIPLLVLGNKIDKPEAL-----------------SKEDLMEQMG-----LKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 119 ~~~~piilv~nK~D~~~~~-----------------~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
..+.++|++.||.|+..+. ..++..+-+. +.....+.+.+..+.|.+-.+|+.+|+.+
T Consensus 260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV 339 (354)
T ss_pred cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence 8899999999999986641 1222222211 11112245567778999999999999999
Q ss_pred HHHhhh
Q 029978 177 VKHSKS 182 (184)
Q Consensus 177 ~~~~~~ 182 (184)
.+.+.+
T Consensus 340 ~d~Ii~ 345 (354)
T KOG0082|consen 340 TDTIIQ 345 (354)
T ss_pred HHHHHH
Confidence 888764
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.2e-13 Score=93.35 Aligned_cols=103 Identities=19% Similarity=0.202 Sum_probs=64.2
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--CCHhH
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LSKED 141 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~ 141 (184)
....++++.|..-..... ...++.++.|+|+.+.+.... .... + ....-++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~---~~l~~~~i~vvD~~~~~~~~~---~~~~---q---i~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS---PELADLTIFVIDVAAGDKIPR---KGGP---G---ITRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccc---hhhhCcEEEEEEcchhhhhhh---hhHh---H---hhhccEEEEEhhhccccccccHHH
Confidence 456677888842211111 122577999999987554221 1111 1 12234899999999853 23333
Q ss_pred HHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 142 LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+.+.+... +...+++++||++|.|++++++++.+.+.
T Consensus 160 ~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 160 MERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34333322 23467999999999999999999998764
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-14 Score=103.05 Aligned_cols=108 Identities=15% Similarity=0.158 Sum_probs=71.3
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-Hh
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KE 140 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~ 140 (184)
..+.+.+++|.|.-+.. -....-+|.+++|....-.+..+.+..-..++ +-++|+||.|...... ..
T Consensus 120 aG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vVNKaD~~gA~~~~~ 187 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVVNKADRPGADRTVR 187 (266)
T ss_dssp TT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE--SHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEEeCCChHHHHHHHH
Confidence 35678899998744322 23456699999999998888888776666665 3489999999765532 23
Q ss_pred HHHHHcCCCC--cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 141 DLMEQMGLKS--ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 141 ~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
++...+.+.. .....++++.+||.++.|+++|++.|.++..
T Consensus 188 ~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 188 DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3333333322 2234578999999999999999999987643
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-13 Score=103.08 Aligned_cols=155 Identities=16% Similarity=0.111 Sum_probs=115.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC-----CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGY-----SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.|+-.|+--.|||||+..+.+... ..+...|+...+...+.++..+.|+|.||++++....-..+...|++++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 578889999999999999986543 344566777777777778889999999999999988888888999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
+.++.- +........++.... ....++|+||+|..+....++..+++..... ....+++.+|+++|.||++|.+.
T Consensus 82 ~~deGl--~~qtgEhL~iLdllg--i~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEGL--MAQTGEHLLILDLLG--IKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccCc--chhhHHHHHHHHhcC--CCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 996522 222222222222211 2345999999999876555555544432222 45567899999999999999999
Q ss_pred HHHHh
Q 029978 176 LVKHS 180 (184)
Q Consensus 176 i~~~~ 180 (184)
|.++.
T Consensus 157 l~~L~ 161 (447)
T COG3276 157 LIDLL 161 (447)
T ss_pred HHHhh
Confidence 99887
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-14 Score=101.73 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=58.2
Q ss_pred EEEEEeCCCcccchHhHHHhc--------cCCCEEEEEEeCCCCCChHHHHHH-HHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 65 TIKLWDLGGQPRFRSMWERYC--------RAVSAIVYVVDAADYDNLPVSRSE-LHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 65 ~~~~~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
.+.++|||||.++...+.... ...-++++++|+.....-...... +..+.-. ...+.|.+.|.||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence 688999999987644333322 334578999999866542222222 1111111 114689999999999987
Q ss_pred cC---------CH-----------hHHHHHcCCCCcCCCce-eEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 136 AL---------SK-----------EDLMEQMGLKSITDREV-CCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 136 ~~---------~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
.. +. ....+.+.......... .++++|+.++.|+++|+..|-++.
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 21 00 11111111111111122 699999999999999999987765
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=100.10 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=74.5
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhH
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KED 141 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~ 141 (184)
.+.+.|++|.|.-+.. -....-+|.++++.-..-.+..+.+..-..++. -++|+||.|....+. ..+
T Consensus 143 G~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia---------Di~vINKaD~~~A~~a~r~ 210 (323)
T COG1703 143 GYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA---------DIIVINKADRKGAEKAARE 210 (323)
T ss_pred CCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh---------heeeEeccChhhHHHHHHH
Confidence 4679999999754433 233455898888887777777777666555553 389999999755422 234
Q ss_pred HHHHcCCCC----cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 142 LMEQMGLKS----ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 142 ~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+...+.+.. .....++++.+||..|.|+++|++.|.++.+
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 444444332 2234678999999999999999999998765
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=113.10 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=78.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC--CC----------------CCCCCccceeeEEee----------------C
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY--SE----------------DMIPTVGFNMRKVTK----------------G 62 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~--~~----------------~~~~t~~~~~~~~~~----------------~ 62 (184)
.+-.+|+|+|+.++|||||+++++...- .. +...|+......+.+ .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 3447899999999999999999984221 00 011122211112222 2
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
++.++++||||+.+|.......++.+|++++|+|+...-..+. +..+..... .++|+++++||+|+.
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 5789999999999999888898999999999999986433232 223333332 578999999999997
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=114.71 Aligned_cols=113 Identities=21% Similarity=0.210 Sum_probs=78.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--CCC-C---------------CCCCccceeeEEeeC----------CEEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--YSE-D---------------MIPTVGFNMRKVTKG----------NVTIKL 68 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--~~~-~---------------~~~t~~~~~~~~~~~----------~~~~~~ 68 (184)
++-.+|+++|+.++|||||+++|+... ... . ...|+........+. ++.+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 445699999999999999999998521 100 0 111111111122222 578999
Q ss_pred EeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
+||||+.++.......++.+|++++|+|+...-..+. ...+..+.. .++|+|+++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence 9999999998888899999999999999987433222 233333332 468999999999997
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=104.18 Aligned_cols=115 Identities=24% Similarity=0.312 Sum_probs=85.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc-CCC-----------------------CCCCCCCccceeeEEeeCCEEEEEEeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT-GGY-----------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~-~~~-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+.-..+||.+|.+|||||-.+++- +.. ..+.+-++......++..++.+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 4456779999999999999999881 110 1112222233445677889999999999
Q ss_pred CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
|+++|..-.++.+..+|.+++|+|+... +......+..-+..+++||+=++||+|....
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG-----iE~qT~KLfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG-----IEPQTLKLFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC-----ccHHHHHHHHHHhhcCCceEEEeeccccccC
Confidence 9999999889999999999999999852 2333333333344488999999999998654
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.3e-13 Score=100.69 Aligned_cols=159 Identities=15% Similarity=0.249 Sum_probs=78.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccc-----eeeEEeeCC-EEEEEEeCCCcccchHhHHH-----hc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGF-----NMRKVTKGN-VTIKLWDLGGQPRFRSMWER-----YC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~-----~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~-----~~ 85 (184)
+..++|+|+|++|+|||||||.+.+-+-..+....++. ....+...+ -.+.+||.||.......... -+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 46799999999999999999999753322221111111 111122222 24999999996433332232 35
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCc--cCc-------CCHhHHHHHcC------CCC
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK--PEA-------LSKEDLMEQMG------LKS 150 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~--~~~-------~~~~~~~~~~~------~~~ 150 (184)
...|.+|++.+-. |....-++...++. .++|+.+|-||+|. ..+ -..+++.+.+. +..
T Consensus 113 ~~yD~fiii~s~r----f~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISSER----FTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEESSS------HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeCCC----CchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 6678777766633 33333333333333 47899999999996 111 11223322221 111
Q ss_pred cCCCceeEEEeeeCC--CCCHHHHHHHHHHHhhh
Q 029978 151 ITDREVCCYMISCKN--STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~--~~~v~~l~~~i~~~~~~ 182 (184)
..-..+++|.+|+.+ ......|.+.+.+-+..
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 222345789999987 45688888888876554
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-13 Score=97.41 Aligned_cols=120 Identities=19% Similarity=0.147 Sum_probs=76.2
Q ss_pred EEEEEEeCCCccc-ch-----Hh-HHHhc-cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 64 VTIKLWDLGGQPR-FR-----SM-WERYC-RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 64 ~~~~~~D~~g~~~-~~-----~~-~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
+...++|||||-. |. .. ...+. ...-++++++|.....+-..........+...+..+.|.|+|.||+|..+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence 4688999999743 21 12 22222 23456888998865444344444444444444457899999999999988
Q ss_pred cCCHhHHHHHc-------CC--C--------------CcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 136 ALSKEDLMEQM-------GL--K--------------SITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 136 ~~~~~~~~~~~-------~~--~--------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
...+.+++... .. . .........+-+|+.+|.|.+++|..+.+.+.++
T Consensus 196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 75443333221 10 0 0112345688899999999999999998887653
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-13 Score=104.04 Aligned_cols=153 Identities=20% Similarity=0.155 Sum_probs=101.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC---------------------------------CCCCCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG---------------------------------GYSEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~---------------------------------~~~~~~~~t~~~~~~~~~~~~ 63 (184)
+..++++++|+..+|||||+.+++.. ..+.+.+-|.......++...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 34588999999999999999999810 011122223333344466667
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC---ChH--HHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NLP--VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA-- 136 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~--~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-- 136 (184)
..+.+.|+||+.+|....-+-...+|+.++|+|++... +|. +..+....+++... -..+|+++||+|+.+=
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCccH
Confidence 88999999999999888888888999999999997532 121 11122222333322 3568999999999763
Q ss_pred CCHhHHHHHcC-----CCCcCCCceeEEEeeeCCCCCHHH
Q 029978 137 LSKEDLMEQMG-----LKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 137 ~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+..+++...+. ........+.|++||+..|.|+-.
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 22334433332 233445566899999999999643
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-12 Score=92.98 Aligned_cols=121 Identities=15% Similarity=0.108 Sum_probs=72.8
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCC---CCCCccceeeEEeeCCEEEEEEeCCCcccch----------HhH
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR----------SMW 81 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~ 81 (184)
.....++|+++|.+|+|||||+|++++...... ...|..............+.++||||..... ...
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 335679999999999999999999997654221 1233333334445567889999999965331 012
Q ss_pred HHhcc--CCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCC-CCCCcEEEEeeCCCccCc
Q 029978 82 ERYCR--AVSAIVYVVDAADYDNLPVSR-SELHDLLSKPS-LNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 82 ~~~~~--~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~piilv~nK~D~~~~ 136 (184)
..++. ..++++++..++... +.... ..+..+..... ..-.++++|.||+|....
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 22332 567888887665422 11221 22222222111 112479999999998654
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.8e-12 Score=92.16 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=69.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC--CCC-CCCccceeeEEeeCCEEEEEEeCCCcccchH-------hHHHhc-
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS--EDM-IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS-------MWERYC- 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~--~~~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~- 85 (184)
...++|+++|.+|+||||++|++++.... ... ..+..............+.++||||..+... ....++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 35689999999999999999999976532 111 1122222223334678999999999654321 112222
Q ss_pred -cCCCEEEEEEeCCCCCChHHH-HHHHHHHhcCC-CCCCCcEEEEeeCCCccC
Q 029978 86 -RAVSAIVYVVDAADYDNLPVS-RSELHDLLSKP-SLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 86 -~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~-~~~~~piilv~nK~D~~~ 135 (184)
...|++++|.+++... +... ...+..+.... ...-.+.|+|.|+.|..+
T Consensus 116 ~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred cCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 2689999996654321 2222 12222222211 112247899999999764
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.4e-13 Score=93.79 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=83.3
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcC-CCC-------CCCCCCcc--------ceeeEEee-----------------
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATG-GYS-------EDMIPTVG--------FNMRKVTK----------------- 61 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~-~~~-------~~~~~t~~--------~~~~~~~~----------------- 61 (184)
.......|+++|+.|+|||||+++++.. ... .+...... ........
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 3344577899999999999999999742 100 00000000 00011110
Q ss_pred ---CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 62 ---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 62 ---~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
.+..+.++||.|.-... ..+....+..+.++|+.+.+... . ..... ...|.++++||+|+.+...
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~-~~~~~------~~~a~iiv~NK~Dl~~~~~ 165 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--L-KYPGM------FKEADLIVINKADLAEAVG 165 (207)
T ss_pred hccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--h-hhHhH------HhhCCEEEEEHHHccccch
Confidence 12356667777721000 11112334556677776543211 1 11111 3467899999999975422
Q ss_pred --HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 139 --KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
..+..+.+... ....+++++||+++.|++++++++.+..
T Consensus 166 ~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 166 FDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 23333332211 2345799999999999999999998764
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.1e-12 Score=93.50 Aligned_cols=107 Identities=13% Similarity=0.027 Sum_probs=65.0
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHH
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDL 142 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~ 142 (184)
.+.+.++||+|.-... ......+|.++++.... +-..+......+ ..+|.++|+||+|+.+.......
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence 5788999999854222 22455677777774433 223333333333 34778999999999765432211
Q ss_pred HHHc----C-CCC-cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 143 MEQM----G-LKS-ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 143 ~~~~----~-~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
...+ . +.. ......+++++||+++.|++++++++.+...
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 1111 1 111 1112246899999999999999999988643
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.1e-13 Score=96.43 Aligned_cols=163 Identities=19% Similarity=0.250 Sum_probs=105.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCC----EEEEEEeCCCcccchHhHHHhccCC----
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN----VTIKLWDLGGQPRFRSMWERYCRAV---- 88 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~~D~~g~~~~~~~~~~~~~~~---- 88 (184)
+.+-+|.++|+.|+||||||.++.+.+ ..+.....++.+..+.... .++.+|-+.|+..+..+....+...
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e-~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSE-TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhccc-ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 356889999999999999999997554 4455555566666554322 4688999999877766666555432
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcC----CC----------------------------------------------
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSK----PS---------------------------------------------- 118 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~----~~---------------------------------------------- 118 (184)
-.+|+++|+++++...+....|...+.. ..
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 3588899999986544333322211100 00
Q ss_pred -----------CCCCcEEEEeeCCCccCcCCH-----hHHHHHcC---CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 119 -----------LNGIPLLVLGNKIDKPEALSK-----EDLMEQMG---LKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 119 -----------~~~~piilv~nK~D~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
..++|+++|+||+|....... ++....+. ..+........+.+|++...|++-|..+|...
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 012389999999998543221 11111111 12223345678999999999999999999876
Q ss_pred h
Q 029978 180 S 180 (184)
Q Consensus 180 ~ 180 (184)
+
T Consensus 289 ~ 289 (473)
T KOG3905|consen 289 S 289 (473)
T ss_pred h
Confidence 4
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.1e-13 Score=108.30 Aligned_cols=116 Identities=23% Similarity=0.238 Sum_probs=85.2
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcC--CCC------------------CCCCCCccceeeEEeeC-CEEEEEEeCCCc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATG--GYS------------------EDMIPTVGFNMRKVTKG-NVTIKLWDLGGQ 74 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~--~~~------------------~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~ 74 (184)
..+-.+|+|+|+..+|||||..+++-. ... .+..-|+........+. ++.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 345678999999999999999999821 111 11122333333456677 499999999999
Q ss_pred ccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
.+|.....+.++-+|++++|+|+...-..+. ...|... ...++|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa----~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQA----DKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHH----hhcCCCeEEEEECcccccc
Confidence 9999999999999999999999986432222 2333333 3358999999999998765
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=91.78 Aligned_cols=162 Identities=14% Similarity=0.100 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCC----CCCccceeeEEeeCCEEEEEEeCCCcccc-------hHhHH----Hh
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDM----IPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWE----RY 84 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~----~~ 84 (184)
++|+++|..|+||||++|.+++....... .-|..............+.++||||--+. ...+. ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 58999999999999999999976643222 22444444445677889999999993211 11111 23
Q ss_pred ccCCCEEEEEEeCCCCCC-hHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC---CCC-cCCCceeEE
Q 029978 85 CRAVSAIVYVVDAADYDN-LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG---LKS-ITDREVCCY 159 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---~~~-~~~~~~~~~ 159 (184)
..+.|++++|+++..... -......+..+... ..-..+|||.|..|.......++..+... +.. .....-.+.
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~--~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGE--EIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCG--GGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccH--HHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 467899999999984321 11111222333221 12246899999998877655443333110 000 000011244
Q ss_pred EeeeC------CCCCHHHHHHHHHHHhhhc
Q 029978 160 MISCK------NSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 160 ~~Sa~------~~~~v~~l~~~i~~~~~~~ 183 (184)
..+.+ +...+.+|++.|-+.+.++
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 44443 3356888999888887754
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=96.03 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=41.4
Q ss_pred CCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 120 NGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 120 ~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
...+.++|+||+|+.+.. +.++..+.+.. .....+++++||++|.|++++.++|.+.
T Consensus 229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 229 FAAASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hhcCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 346789999999997632 23444444322 2245679999999999999999999874
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.2e-12 Score=94.96 Aligned_cols=82 Identities=22% Similarity=0.339 Sum_probs=56.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCC--CCCCccceeeEEeeC-----------------CEEEEEEeCCCccc-
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSED--MIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPR- 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~--~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~- 76 (184)
...++|+|+|.||+|||||++.+++...... +..|.......+... +..+.++||||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 4568999999999999999999986554322 333444333333222 33589999999432
Q ss_pred ------chHhHHHhccCCCEEEEEEeCC
Q 029978 77 ------FRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 77 ------~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
........++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1223344568899999999984
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.7e-12 Score=91.85 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=97.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCC----CCCCC-----CCCcc--ceeeEE-------eeCCEEEEEEeCCCcccchH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGG----YSEDM-----IPTVG--FNMRKV-------TKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~----~~~~~-----~~t~~--~~~~~~-------~~~~~~~~~~D~~g~~~~~~ 79 (184)
-.++++++|+..||||||.+++..-. |...+ .-|.+ +....+ ......+.++|.||+.....
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 35899999999999999999998422 11111 11222 111111 23346789999999987766
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH----hHHHHHcC--CCC-cC
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK----EDLMEQMG--LKS-IT 152 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~--~~~-~~ 152 (184)
.+.....-.|..++|+|+....--+...- .-+.+. .-...++|+||+|..++... ++.....+ +.. ..
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEc--Liig~~---~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAEC--LIIGEL---LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchh--hhhhhh---hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 66666677789999999975322121111 111111 12457888999998765321 22222221 111 22
Q ss_pred CCceeEEEeeeCCC----CCHHHHHHHHHHHhh
Q 029978 153 DREVCCYMISCKNS----TNIDTVIDWLVKHSK 181 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~----~~v~~l~~~i~~~~~ 181 (184)
..+.|++++||++| .++.+|.+.+.+.+-
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 34578999999999 677777777776654
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-13 Score=87.95 Aligned_cols=114 Identities=15% Similarity=0.108 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCC-CCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
+|++++|..|+|||+|+.++....+...+. +|.+ +......+.+.++.++.|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 489999999999999999998777765544 4443 2222234556789999999999
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 99 DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+.+++... |...+.... ..+.|.++++||.|+.... +..+.. ...++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~---~~~~~~--------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEER---QVATEE--------GLEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhC---cCCHHH--------HHHHHHHhCCCcchhh
Confidence 88877654 444444332 3578999999999984321 111111 1136678999999885
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-12 Score=98.26 Aligned_cols=122 Identities=23% Similarity=0.386 Sum_probs=88.6
Q ss_pred Eee-CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC----------ChHHHHHHHHHHhcCCCCCCCcEEEE
Q 029978 59 VTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD----------NLPVSRSELHDLLSKPSLNGIPLLVL 127 (184)
Q Consensus 59 ~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~piilv 127 (184)
+.. +...+.++|++|+...+..|..++.+.++++||+++++.+ .+.+....+..+.......++|+||+
T Consensus 230 f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~ 309 (389)
T PF00503_consen 230 FNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILF 309 (389)
T ss_dssp EEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEE
T ss_pred EEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEe
Confidence 444 6678899999999988999999999999999999998643 24555667788888777779999999
Q ss_pred eeCCCccCc--------------------CCHhHHHHHcC-----CCCcCC--CceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 128 GNKIDKPEA--------------------LSKEDLMEQMG-----LKSITD--REVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 128 ~nK~D~~~~--------------------~~~~~~~~~~~-----~~~~~~--~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
.||.|+..+ .+.+...+.+. ...... +.+.++.++|.+..+++.+|+.+.+.+
T Consensus 310 lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 310 LNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp EE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 999997432 12222222221 111111 556777899999999999999988754
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.5e-12 Score=100.17 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCC----CCCccceeeEEe----------------eCCEEEEEEeCCCcccchH
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDM----IPTVGFNMRKVT----------------KGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~----~~t~~~~~~~~~----------------~~~~~~~~~D~~g~~~~~~ 79 (184)
.-|||+|+..+|||-|+..+.+......- ...++.++.+.. ..--.+.++||||++.|.+
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn 555 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN 555 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence 55899999999999999999864332211 111222222111 1112477899999999999
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc------CCH------------hH
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA------LSK------------ED 141 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~------~~~------------~~ 141 (184)
++.+....||.+|+|+|+...-.-+.+ +-++....++.|+|++.||+|..-. ... .+
T Consensus 556 lRsrgsslC~~aIlvvdImhGlepqti-----ESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~E 630 (1064)
T KOG1144|consen 556 LRSRGSSLCDLAILVVDIMHGLEPQTI-----ESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNE 630 (1064)
T ss_pred hhhccccccceEEEEeehhccCCcchh-----HHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHH
Confidence 999999999999999999752111111 1111222368999999999997532 000 11
Q ss_pred HHH----------HcCCCC---cC----CCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 142 LME----------QMGLKS---IT----DREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 142 ~~~----------~~~~~~---~~----~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+.. +.++.. +. ...+.++++||.+|.||-+|+-+|++...
T Consensus 631 F~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 631 FKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 111 111111 11 23578999999999999999999987644
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-11 Score=94.08 Aligned_cols=178 Identities=20% Similarity=0.284 Sum_probs=107.6
Q ss_pred hHHHHHHHHHhh---ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeC----CEEEEEEeCCCcc
Q 029978 3 LWEAFLNWLRSL---FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKG----NVTIKLWDLGGQP 75 (184)
Q Consensus 3 ~~~~~~~~~~~~---~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~D~~g~~ 75 (184)
+|..++.-.... -....-.|.|+|..++|||||+.+|.+.+. .......+|.+..+... ..++.+|...|..
T Consensus 6 lW~siL~ev~~~~~~~~~~~k~vlvlG~~~~GKttli~~L~~~e~-~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~ 84 (472)
T PF05783_consen 6 LWSSILSEVSNSSSTKLPSEKSVLVLGDKGSGKTTLIARLQGIED-PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDP 84 (472)
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEeCCCCchHHHHHHhhccCC-CCCCcccceEEEeeccCcCCcCceeeEEEcCCCc
Confidence 455555554321 123457899999999999999999875432 22223333444443221 2578999998877
Q ss_pred cchHhHHHhccCC----CEEEEEEeCCCCCChHHHH-HH----------------------------HHHHhc---CC--
Q 029978 76 RFRSMWERYCRAV----SAIVYVVDAADYDNLPVSR-SE----------------------------LHDLLS---KP-- 117 (184)
Q Consensus 76 ~~~~~~~~~~~~~----~~~i~v~d~~~~~~~~~~~-~~----------------------------~~~~~~---~~-- 117 (184)
.+..+....+... -.+++|+|.+.+..+.... .| |.+..+ ..
T Consensus 85 ~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~ 164 (472)
T PF05783_consen 85 SHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDS 164 (472)
T ss_pred chHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 7766666555432 3588999999986544221 11 111000 00
Q ss_pred -------------C---------------CCCCcEEEEeeCCCccCcCCH-----hH---HHHHcCCCCcCCCceeEEEe
Q 029978 118 -------------S---------------LNGIPLLVLGNKIDKPEALSK-----ED---LMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 118 -------------~---------------~~~~piilv~nK~D~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~ 161 (184)
. ..++|++||++|+|....... ++ ...+.-+.......+..+.|
T Consensus 165 ~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yt 244 (472)
T PF05783_consen 165 GSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYT 244 (472)
T ss_pred cCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEe
Confidence 0 013599999999998543211 11 11111122233446678999
Q ss_pred eeCCCCCHHHHHHHHHHHhh
Q 029978 162 SCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~~~ 181 (184)
|++...|++.|+.+|...+.
T Consensus 245 s~~~~~n~~~L~~yi~h~l~ 264 (472)
T PF05783_consen 245 SVKEEKNLDLLYKYILHRLY 264 (472)
T ss_pred eccccccHHHHHHHHHHHhc
Confidence 99999999999999887654
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.9e-11 Score=82.90 Aligned_cols=152 Identities=21% Similarity=0.245 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC-CCCC-CCCccceeeEEeeCCEEEEEEeCCCcccc-------hHhHHHhccCCCE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY-SEDM-IPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~-~~~~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~~~ 90 (184)
-+|+++|.|.+|||||+..+..-.. ...+ ..|.......+...+..+++.|.||.-.- ..+.-+..+.+|.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDl 142 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADL 142 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecccE
Confidence 6899999999999999999973211 1111 11222222224455668999999984322 2334456788999
Q ss_pred EEEEEeCCCCCChHHHH-HHHHHHhc--CCCCCCC---------------------------------------------
Q 029978 91 IVYVVDAADYDNLPVSR-SELHDLLS--KPSLNGI--------------------------------------------- 122 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~-~~~~~~~~--~~~~~~~--------------------------------------------- 122 (184)
+++|.|++..+.-..+. +.++.+-- ....+++
T Consensus 143 ilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ReD 222 (364)
T KOG1486|consen 143 ILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFRED 222 (364)
T ss_pred EEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEecC
Confidence 99999998765433222 22332211 1111222
Q ss_pred -----------------cEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 123 -----------------PLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 123 -----------------piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+++.|.||+|...- +++....... .-+-+||.-+.|++.+++.++..+.
T Consensus 223 ~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~---eevdrlAr~P-------nsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 223 CTVDDFIDVIEGNRVYIKCLYVYNKIDQVSI---EEVDRLARQP-------NSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred CChHHHHHHHhccceEEEEEEEeeccceecH---HHHHHHhcCC-------CcEEEEeccccCHHHHHHHHHHHhc
Confidence 78889999998665 4443332221 2466999999999999999998764
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=88.80 Aligned_cols=95 Identities=20% Similarity=0.160 Sum_probs=70.6
Q ss_pred ccchHhHHHhccCCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh-HHHHHcCCCCcC
Q 029978 75 PRFRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE-DLMEQMGLKSIT 152 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-~~~~~~~~~~~~ 152 (184)
+++..+.+.+++.+|.+++|+|+++++ ++..+..|+..+.. .++|+++|+||+|+.+..... +..+.+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~----- 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR----- 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-----
Confidence 455666677899999999999999877 78888777765432 579999999999996542221 2222221
Q ss_pred CCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 153 DREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
....+++++||++|.|++++++.+.+
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 12356999999999999999998764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=79.41 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=41.6
Q ss_pred EEEEEeCCCcc----cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 029978 65 TIKLWDLGGQP----RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131 (184)
Q Consensus 65 ~~~~~D~~g~~----~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 131 (184)
.+.++||||.. ........+++.+|++++|.+++....-... ..+...... ....+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTT---TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcC---CCCeEEEEEcCC
Confidence 48899999953 2336677888999999999999874433322 333333333 233489999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.1e-11 Score=80.69 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=60.1
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH--hH
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--ED 141 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--~~ 141 (184)
..+-|++..|. .....++--..+.-|+|+|++..+.. .++. ...... .-++|+||.|+.+.... +.
T Consensus 97 ~Dll~iEs~GN---L~~~~sp~L~d~~~v~VidvteGe~~--P~K~------gP~i~~-aDllVInK~DLa~~v~~dlev 164 (202)
T COG0378 97 LDLLFIESVGN---LVCPFSPDLGDHLRVVVIDVTEGEDI--PRKG------GPGIFK-ADLLVINKTDLAPYVGADLEV 164 (202)
T ss_pred CCEEEEecCcc---eecccCcchhhceEEEEEECCCCCCC--cccC------CCceeE-eeEEEEehHHhHHHhCccHHH
Confidence 35666666661 11111222223478888898865421 1111 111122 56899999999876443 33
Q ss_pred HHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 142 LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
..+....- +...+++++|+++|.|++++++++....
T Consensus 165 m~~da~~~---np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 165 MARDAKEV---NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHh---CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 33332211 2345799999999999999999987654
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-10 Score=83.02 Aligned_cols=157 Identities=20% Similarity=0.214 Sum_probs=101.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc----------------CCCCCC--CCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT----------------GGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~----------------~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
+...+|+.+|+...|||||...+.. +..+.+ ..-|+......+...+......|+||+.+|.
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 4569999999999999999888762 111222 2224444444566677889999999999998
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCC--------HhHHHHHcCCC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALS--------KEDLMEQMGLK 149 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~--------~~~~~~~~~~~ 149 (184)
.....-..+.|..|+|+++++..--+ -++. .-+.++ -++| ++++.||+|+.+..+ ..+++..++.
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPq-TrEH-iLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f- 163 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQ-TREH-ILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF- 163 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCc-chhh-hhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC-
Confidence 77777778889999999998743211 1111 122222 3464 566779999987532 2333333333
Q ss_pred CcCCCceeEEEeeeCCCC--------CHHHHHHHHHHHhh
Q 029978 150 SITDREVCCYMISCKNST--------NIDTVIDWLVKHSK 181 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~~~ 181 (184)
.....|++.-||+.-. .|.+|++.+-+++.
T Consensus 164 --~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 164 --PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred --CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 2335578877877422 36777777766654
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-09 Score=81.47 Aligned_cols=152 Identities=14% Similarity=0.148 Sum_probs=84.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC----CCC--------------CCCC---CCcccee--------eEEeeCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG----GYS--------------EDMI---PTVGFNM--------RKVTKGNVTIK 67 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~----~~~--------------~~~~---~t~~~~~--------~~~~~~~~~~~ 67 (184)
.-.+.|+++|+.++|||||+++|.+. ... +..+ .|+...+ ...+.....+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 44688999999999999999999965 211 1122 2333222 11223347899
Q ss_pred EEeCCCccc--------chH-------------------h--HHHhcc-CCCEEEEEE-eCC----CCCChHHHHHHHHH
Q 029978 68 LWDLGGQPR--------FRS-------------------M--WERYCR-AVSAIVYVV-DAA----DYDNLPVSRSELHD 112 (184)
Q Consensus 68 ~~D~~g~~~--------~~~-------------------~--~~~~~~-~~~~~i~v~-d~~----~~~~~~~~~~~~~~ 112 (184)
++||+|... ... . ....+. .++..++|. |.+ .++.+......+..
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999998221 111 0 233455 788888888 664 12334444433333
Q ss_pred HhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC--CHHHHHHHH
Q 029978 113 LLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST--NIDTVIDWL 176 (184)
Q Consensus 113 ~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--~v~~l~~~i 176 (184)
.++. .++|+++|.||.|-..... .+..+.+... ...+++++||.+-. .|..+++.+
T Consensus 175 eLk~---~~kPfiivlN~~dp~~~et-~~l~~~l~ek----y~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHPYHPET-EALRQELEEK----YDVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred HHHh---cCCCEEEEEECcCCCCchh-HHHHHHHHHH----hCCceEEEEHHHcCHHHHHHHHHHH
Confidence 3322 5799999999999432222 3232222111 12357778776533 344444433
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-10 Score=90.07 Aligned_cols=111 Identities=23% Similarity=0.298 Sum_probs=78.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCC---------CCCccc------ee----eE-----EeeCCEEEEEEeCCCc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDM---------IPTVGF------NM----RK-----VTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~---------~~t~~~------~~----~~-----~~~~~~~~~~~D~~g~ 74 (184)
-.+|+++|+-++|||+|+..|....-+.-. ..+... .. .+ .....+-+++.||||+
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH 207 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH 207 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence 367899999999999999999854432221 111110 00 00 1234467999999999
Q ss_pred ccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
..|.......++.+|++++++|+.+.-.++..+.....+ ..+.|+.+|+||+|..
T Consensus 208 VnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai-----q~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 208 VNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI-----QNRLPIVVVINKVDRL 262 (971)
T ss_pred ccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH-----hccCcEEEEEehhHHH
Confidence 999999999999999999999998765555433322222 2478999999999964
|
|
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-11 Score=95.68 Aligned_cols=115 Identities=20% Similarity=0.186 Sum_probs=82.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--------C------------CCCCCCCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--------Y------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--------~------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
++--+|+|.-+-.+||||+-++.+... . .....-|+......+.+.++.++++||||+-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 345678999999999999999987211 0 11112222333344667889999999999999
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
|-....+.++-.|+++++++....-- ......|..+.+ .++|.+..+||+|....
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~r----y~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKR----YNVPRICFINKMDRMGA 171 (721)
T ss_pred EEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHh----cCCCeEEEEehhhhcCC
Confidence 99888999999999999888864321 122344555544 48999999999998764
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-10 Score=85.96 Aligned_cols=159 Identities=17% Similarity=0.176 Sum_probs=102.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcc------------------ceeeEEe-----------------
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG------------------FNMRKVT----------------- 60 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~------------------~~~~~~~----------------- 60 (184)
.+..+.|+..|+...|||||+-.|..+........|.. +..+-++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 35568899999999999999999886554333333221 1111111
Q ss_pred ----eCCEEEEEEeCCCcccchHh--HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 61 ----KGNVTIKLWDLGGQPRFRSM--WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 61 ----~~~~~~~~~D~~g~~~~~~~--~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
..+.-+.+.||.|++.+... ...+-.+.|..++++.+++..+ ..-+... ........|+|+|+||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHL---gi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHL---GIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhh---hhhhhhcCCEEEEEEecccC
Confidence 11235889999999988653 3344578999999999987432 2222222 22233579999999999998
Q ss_pred CcCCHhHHHHHc----C---C----------------CCcCCC-ceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 135 EALSKEDLMEQM----G---L----------------KSITDR-EVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 135 ~~~~~~~~~~~~----~---~----------------~~~~~~-~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
+++..+.+.+++ . . .....+ -.|++.+|+-+|.|++-|.+.+..+
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L 337 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL 337 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC
Confidence 875433332222 1 0 011122 5799999999999998887766543
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-09 Score=86.32 Aligned_cols=119 Identities=14% Similarity=0.094 Sum_probs=70.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC-CCCC--CCCccceeeEEeeCCEEEEEEeCCCcccc----------hHhHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY-SEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRF----------RSMWER 83 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~-~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~~ 83 (184)
...++|+++|.+|+||||++|++++... .... ..|..............+.++||||.... ......
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 4457899999999999999999997653 2221 22322222222345678999999995432 111222
Q ss_pred hcc--CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCC-CCCcEEEEeeCCCccC
Q 029978 84 YCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL-NGIPLLVLGNKIDKPE 135 (184)
Q Consensus 84 ~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~ 135 (184)
++. ..|++++|.++.......+-...+..+...... --..+|||.|+.|..+
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 333 579999998876433322222233332221110 1236899999999875
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.1e-11 Score=91.01 Aligned_cols=158 Identities=23% Similarity=0.403 Sum_probs=113.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccc--eeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGF--NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.++|++|+|..++|||.|+.+++.+.+..+..+.-+. ....++.....+.+.|-+|... ..+....|++||+|
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf 103 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVF 103 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEE
Confidence 4699999999999999999999998887665554442 2233556677788888887544 55667789999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHH-HcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLME-QMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
.+.+..+|+.+......+..+.....+|.++++++ |.......+-+.+ +-.........+.+|++++..|.|+...|.
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtq-d~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~ 182 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQ-DHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ 182 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCc-chhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence 99999999999888888877666678899999987 3322211111111 111112233455699999999999999999
Q ss_pred HHHHHhh
Q 029978 175 WLVKHSK 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
.+...+.
T Consensus 183 ~~~~k~i 189 (749)
T KOG0705|consen 183 EVAQKIV 189 (749)
T ss_pred HHHHHHH
Confidence 8876654
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-08 Score=71.47 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=42.9
Q ss_pred EEEEEEeCCCccc-------------chHhHHHhcc-CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 029978 64 VTIKLWDLGGQPR-------------FRSMWERYCR-AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 129 (184)
Q Consensus 64 ~~~~~~D~~g~~~-------------~~~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 129 (184)
..+.++||||-.. ...+...+++ ..+.+++|+|++..-.-... ..+.+.....+.|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~----l~ia~~ld~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA----LKLAKEVDPQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH----HHHHHHHHHcCCcEEEEEE
Confidence 3688999999532 1234556666 44588889988642211111 1222222335789999999
Q ss_pred CCCccCc
Q 029978 130 KIDKPEA 136 (184)
Q Consensus 130 K~D~~~~ 136 (184)
|.|..+.
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9999764
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.1e-10 Score=78.92 Aligned_cols=152 Identities=18% Similarity=0.123 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCCEEEEEEeCCCcccc-------hHhHHHhccCCCE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~~~ 90 (184)
-+|.++|.|.+||||++..+.+...+ .....|............-++++.|.||.-.- ..+.....+.|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 38999999999999999999843221 11111211111222344567999999984321 2344556788999
Q ss_pred EEEEEeCCCCCChHHHHHHHHH-H--hcCCCCC-----------------------------------------------
Q 029978 91 IVYVVDAADYDNLPVSRSELHD-L--LSKPSLN----------------------------------------------- 120 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~-~--~~~~~~~----------------------------------------------- 120 (184)
+++|.|+..+-+...+.+.-.+ + ......+
T Consensus 140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D 219 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD 219 (358)
T ss_pred EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence 9999999876544443322111 0 0000001
Q ss_pred -----------CCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 121 -----------GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 121 -----------~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
-+|++.+.||+|...- +|.. .....+..+++||-.++|++++++.+++.+.
T Consensus 220 dLIdvVegnr~yVp~iyvLNkIdsISi---EELd-------ii~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 220 DLIDVVEGNRIYVPCIYVLNKIDSISI---EELD-------IIYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhccCceeeeeeeeecccceeee---eccc-------eeeeccceeecccccccchHHHHHHHhhcch
Confidence 1288889999987654 2221 1123346899999999999999999998765
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.2e-09 Score=81.98 Aligned_cols=151 Identities=17% Similarity=0.223 Sum_probs=99.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--e--EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--R--KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++-+.+.++|+.++|||.+++.++++.+...+..+....+ . ........+.+-|.+-.+ ....... -..+|++.
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~-~~~l~~k-e~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDD-QDFLTSK-EAACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCccc-cccccCc-cceeeeEE
Confidence 4458899999999999999999998777664433333221 1 122344455566655331 1111111 16799999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-----CHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-----SKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++||++++.+|......+...... ...|+++|++|+|+.+.. .+++...++++.. -..+|++...
T Consensus 501 ~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~-------P~~~S~~~~~ 570 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP-------PIHISSKTLS 570 (625)
T ss_pred EecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC-------CeeeccCCCC
Confidence 999999999998877665544332 679999999999986532 3466777776653 3446666433
Q ss_pred CHHHHHHHHHHHh
Q 029978 168 NIDTVIDWLVKHS 180 (184)
Q Consensus 168 ~v~~l~~~i~~~~ 180 (184)
. ..+|..|....
T Consensus 571 s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 571 S-NELFIKLATMA 582 (625)
T ss_pred C-chHHHHHHHhh
Confidence 3 78888877654
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.8e-09 Score=77.52 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=57.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEe------------------eCCEEEEEEeCCCcc---
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVT------------------KGNVTIKLWDLGGQP--- 75 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~------------------~~~~~~~~~D~~g~~--- 75 (184)
.++++|+|-||||||||.+.++..... .-+..|+......+. .....++++|.+|--
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999976643 223445553332211 112568999999832
Q ss_pred ----cchHhHHHhccCCCEEEEEEeCCC
Q 029978 76 ----RFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 76 ----~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
-..+..-.-+|.+|+++-|+++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 334556677899999999999973
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=79.92 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=61.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCC----------CCCcccee--eEEee--CCEEEEEEeCCCcccc-------
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDM----------IPTVGFNM--RKVTK--GNVTIKLWDLGGQPRF------- 77 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~----------~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~------- 77 (184)
.++|+++|.+|+|||||++.|.+....... ..+..... ..... ..+.+.++||||....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999965432221 01111111 11222 2367889999992210
Q ss_pred -----------hHhHH---------HhccCCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 78 -----------RSMWE---------RYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 78 -----------~~~~~---------~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
..... ..-...|+++++++.+.. ...... ..+..+. ..+++|-|+.|+|..-.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS-----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT-----TTSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc-----ccccEEeEEecccccCH
Confidence 00000 001245889999998653 222222 2333333 35889999999998654
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.2e-10 Score=78.89 Aligned_cols=133 Identities=17% Similarity=0.312 Sum_probs=87.8
Q ss_pred CCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC----------CCChHHHHHHHHHHhcCCCC
Q 029978 50 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------YDNLPVSRSELHDLLSKPSL 119 (184)
Q Consensus 50 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~ 119 (184)
||.+...++++..++-+.+.|.+|+..-+..|...+...-.+++++.++. .....+....+..++.+...
T Consensus 185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF 264 (359)
T KOG0085|consen 185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 264 (359)
T ss_pred CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence 34444444455566778899999988777777776666666666665553 23445555667778888888
Q ss_pred CCCcEEEEeeCCCccCcCC------------------Hh---HHHHHc--CCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 120 NGIPLLVLGNKIDKPEALS------------------KE---DLMEQM--GLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 120 ~~~piilv~nK~D~~~~~~------------------~~---~~~~~~--~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
.+.++|+..||.|+.++.. ++ +..-.+ .+..-..+...-.++.|.+-.||..+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 8999999999999976521 11 111111 122223334445678999999999999988
Q ss_pred HHHhhh
Q 029978 177 VKHSKS 182 (184)
Q Consensus 177 ~~~~~~ 182 (184)
.+.+.+
T Consensus 345 kDtiLq 350 (359)
T KOG0085|consen 345 KDTILQ 350 (359)
T ss_pred HHHHHH
Confidence 877654
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=76.45 Aligned_cols=146 Identities=22% Similarity=0.340 Sum_probs=92.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCC---CCCCCCCCccceeeEEe-eCCEEEEEEeCCCcccchH-----hHHHhccCCC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGG---YSEDMIPTVGFNMRKVT-KGNVTIKLWDLGGQPRFRS-----MWERYCRAVS 89 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~---~~~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~~ 89 (184)
.-||.+.|.+|+||||+=..+..+. .....+.|+.....++. .++..+++||.+|++.+.. .....++..+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 4689999999999999855554222 13345556655555443 4568999999999986543 3445678899
Q ss_pred EEEEEEeCCCCCC---hHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCC---CCcCCCceeEEEeee
Q 029978 90 AIVYVVDAADYDN---LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL---KSITDREVCCYMISC 163 (184)
Q Consensus 90 ~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Sa 163 (184)
+++++||+...+- +...++-+..+++. .+...+.+..+|+|+.+....+++-++... .......+.++++|-
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 9999999987542 22333334444443 367788999999999887554333322111 111122356777777
Q ss_pred CCC
Q 029978 164 KNS 166 (184)
Q Consensus 164 ~~~ 166 (184)
.+.
T Consensus 162 wDe 164 (295)
T KOG3886|consen 162 WDE 164 (295)
T ss_pred hhH
Confidence 653
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-09 Score=79.00 Aligned_cols=77 Identities=27% Similarity=0.378 Sum_probs=51.4
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCC--CCCCccceeeEEeeC-----------------CEEEEEEeCCCccc------
Q 029978 22 LSLIGLQNAGKTSLVNVIATGGYSED--MIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPR------ 76 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~~~~~~--~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~------ 76 (184)
|+|+|.|++|||||++++++...... +..|+......+... ...+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 58999999999999999997665322 334444333322221 13599999999432
Q ss_pred -chHhHHHhccCCCEEEEEEeCC
Q 029978 77 -FRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 77 -~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
........++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1222334467899999999974
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-09 Score=80.04 Aligned_cols=79 Identities=28% Similarity=0.346 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCCccceeeEEeeC-----------------CEEEEEEeCCCcccc---
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSE--DMIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPRF--- 77 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~~--- 77 (184)
++|+++|.||+|||||++++++..... .+..|+......+... ...+.+.|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999766432 2344444333222211 135899999994321
Q ss_pred ----hHhHHHhccCCCEEEEEEeCC
Q 029978 78 ----RSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 78 ----~~~~~~~~~~~~~~i~v~d~~ 98 (184)
.......++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 123334568899999999985
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-09 Score=74.29 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=63.5
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHc---CCCCcC
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQM---GLKSIT 152 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~---~~~~~~ 152 (184)
+...+..+++.+|++++|+|++++..- +...+... ..+.|+++|+||+|+.+... ..+..... ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 577788889999999999999875421 11111111 14689999999999975432 12121111 101111
Q ss_pred CCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 153 DREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
....+++++||+++.|++++++.+.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11125899999999999999999988653
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-10 Score=81.90 Aligned_cols=159 Identities=18% Similarity=0.242 Sum_probs=100.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCC---CCCC--CCCCccceee-----EEe---------------------------
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGG---YSED--MIPTVGFNMR-----KVT--------------------------- 60 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~---~~~~--~~~t~~~~~~-----~~~--------------------------- 60 (184)
..++|+-+|+.-.||||++..+.+-. |..+ ..-|+...+. ..+
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 45899999999999999999887321 1111 1112211110 000
Q ss_pred -eCC----EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHH--HHHHHhcCCCCCCCcEEEEeeCCCc
Q 029978 61 -KGN----VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS--ELHDLLSKPSLNGIPLLVLGNKIDK 133 (184)
Q Consensus 61 -~~~----~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~piilv~nK~D~ 133 (184)
.++ ..+.|.|.||++-.......-..-.|++++++..+....-..--+ ...++.+ -+.++++-||+|+
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~-----LkhiiilQNKiDl 191 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK-----LKHIIILQNKIDL 191 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh-----hceEEEEechhhh
Confidence 001 357899999998776555544455678888888765322111111 1223332 3578999999999
Q ss_pred cCcCCHhHHHHHcC--CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 134 PEALSKEDLMEQMG--LKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 134 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
..+..+.+..+++. .........|++++||.-.+|++.+.|+|.+.+.
T Consensus 192 i~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 88766555444443 1222345678999999999999999999998764
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-09 Score=73.23 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=61.4
Q ss_pred hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCcee
Q 029978 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVC 157 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
+.+.....+.+|++++|+|++++..... ..+...... .+.|+++|+||+|+.+.....+.. .+. .....+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~-~~~----~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWK-SIK----ESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHH-HHH----HhCCCc
Confidence 3456677788999999999987543222 112222221 368999999999986432111111 111 112246
Q ss_pred EEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 158 CYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 158 ~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
++++||+++.|++++++.+.+.+.
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHh
Confidence 899999999999999999988764
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.4e-09 Score=70.86 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=35.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g 73 (184)
....+|+++|.+|+|||||+|++.+.... ...+.|........ .-.+.++||||
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~liDtPG 156 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MKRIYLIDCPG 156 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CCCEEEEECcC
Confidence 35688999999999999999999864431 22222322222221 12478999998
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-09 Score=80.19 Aligned_cols=153 Identities=19% Similarity=0.257 Sum_probs=95.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCC------------------CCCCCCCCccceeeEEe-----------------e--
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGG------------------YSEDMIPTVGFNMRKVT-----------------K-- 61 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~------------------~~~~~~~t~~~~~~~~~-----------------~-- 61 (184)
+.+|+++|...+|||||+-.+.+++ +......+++.+..-++ |
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 4789999999999999998887432 12222223332222111 1
Q ss_pred ---C-CEEEEEEeCCCcccchHh--HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 62 ---G-NVTIKLWDLGGQPRFRSM--WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 62 ---~-~~~~~~~D~~g~~~~~~~--~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
. .-.+.|+|.+|+++|... ..+.-+-.|...+++-++- .+-...+....+ .....+|+.+|+||+|..+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNa--GIiGmTKEHLgL---ALaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANA--GIIGMTKEHLGL---ALALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccc--cceeccHHhhhh---hhhhcCcEEEEEEeeccCc
Confidence 1 124789999999998753 2333455677777777653 222222222222 2224699999999999987
Q ss_pred cCCHhHHHHHcC-------------------------CCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 136 ALSKEDLMEQMG-------------------------LKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 136 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
....+|.++.+. ..+...+-+|+|.+|.-+|.|++-|.-.+
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 765555554331 12233456899999999999987665443
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.4e-09 Score=70.57 Aligned_cols=55 Identities=24% Similarity=0.340 Sum_probs=37.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC-C--CCCCCCccceeeEEeeCCEEEEEEeCCCc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY-S--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (184)
...++++++|.||+|||||+|++.+... . ..++.|........ . ..+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~--~-~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL--D-KKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe--C-CCEEEEECcCC
Confidence 3458999999999999999999996543 2 22233333222222 2 35889999983
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-09 Score=87.02 Aligned_cols=110 Identities=22% Similarity=0.273 Sum_probs=75.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCC------------CC--CCCCCCcc----ceeeEEeeCCEEEEEEeCCCcccchHh
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGG------------YS--EDMIPTVG----FNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~------------~~--~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
--+++++-+...|||||+..+.-.. |- .+...+.+ ......-.+++.++++|+||+.+|-..
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se 88 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE 88 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence 3578999999999999999998221 10 01111111 111223347789999999999999999
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCc
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 133 (184)
..+..+-+|.+++++|+...-. .....++++....+...|+|+||+|.
T Consensus 89 vssas~l~d~alvlvdvvegv~-----~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 89 VSSASRLSDGALVLVDVVEGVC-----SQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhcCCcEEEEeeccccc-----hhHHHHHHHHHHccCceEEEEehhhh
Confidence 9999999999999999976322 22222222222245678999999993
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.4e-08 Score=72.60 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=91.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEee-CCEEEEEEeCCCccc--chHhHH------HhccC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR--FRSMWE------RYCRA 87 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~--~~~~~~------~~~~~ 87 (184)
.--|+++|=.|+|||||+++++....- .....|.......... ....+-+.||-|.-. ...+.. .-...
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVae 257 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAE 257 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhh
Confidence 356899999999999999999843321 2233344433322211 123577789998321 112222 22467
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc----EEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP----LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p----iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+|.++-|+|++.++.-......+.-+. ....++.| +|=|-||+|..+.....| .+ ..+.+||
T Consensus 258 adlllHvvDiShP~ae~q~e~Vl~vL~-~igv~~~pkl~~mieVdnkiD~e~~~~e~E----------~n---~~v~isa 323 (410)
T KOG0410|consen 258 ADLLLHVVDISHPNAEEQRETVLHVLN-QIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----------KN---LDVGISA 323 (410)
T ss_pred cceEEEEeecCCccHHHHHHHHHHHHH-hcCCCcHHHHhHHHhhccccccccccCccc----------cC---Ccccccc
Confidence 899999999999875554444444443 32323233 455778888765422111 11 1567999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
++|.|.+++.+.+-..+.
T Consensus 324 ltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 324 LTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccCccHHHHHHHHHHHhh
Confidence 999999999998876654
|
|
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-10 Score=85.45 Aligned_cols=124 Identities=23% Similarity=0.213 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC--------C------------CCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchH
Q 029978 20 MELSLIGLQNAGKTSLVNVIATG--------G------------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~--------~------------~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
-+|+|+.+..+||||.-.+++.- . ...+.+-|+......++++.++++++||||+.+|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 67899999999999999998721 0 012233344455567889999999999999999999
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC---CHhHHHHHcCC
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL---SKEDLMEQMGL 148 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~---~~~~~~~~~~~ 148 (184)
...+.++-.|+++.|||.+-.-. ......+++....++|-+..+||+|+.... .++.+.+.++.
T Consensus 118 everclrvldgavav~dasagve-----~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVE-----AQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcc-----cceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 99999999999999999985322 222333445555789999999999997643 34555555553
|
|
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=73.20 Aligned_cols=122 Identities=18% Similarity=0.235 Sum_probs=83.1
Q ss_pred eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC----------ChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 029978 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD----------NLPVSRSELHDLLSKPSLNGIPLLVLGNK 130 (184)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~piilv~nK 130 (184)
.....+..+|.+||.+-+..|...+.+..++|+|+..+..+ ..++....+..+.+......+.+|+..||
T Consensus 199 Vdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNK 278 (379)
T KOG0099|consen 199 VDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNK 278 (379)
T ss_pred ccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecH
Confidence 34557889999999999999999999999999999988642 23334445566666666678899999999
Q ss_pred CCccCcC------------------------------CHhHHHHHcC-------C---CCcCCCceeEEEeeeCCCCCHH
Q 029978 131 IDKPEAL------------------------------SKEDLMEQMG-------L---KSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 131 ~D~~~~~------------------------------~~~~~~~~~~-------~---~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
.|+..+. ++.-+...+- . ..-..+-+...++.|.+-.||.
T Consensus 279 qDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIr 358 (379)
T KOG0099|consen 279 QDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIR 358 (379)
T ss_pred HHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHH
Confidence 9986531 0111111100 0 0001123445568899999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
.+|....+++..
T Consensus 359 rVFnDcrdiIqr 370 (379)
T KOG0099|consen 359 RVFNDCRDIIQR 370 (379)
T ss_pred HHHHHHHHHHHH
Confidence 999887777653
|
|
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=74.79 Aligned_cols=160 Identities=16% Similarity=0.104 Sum_probs=98.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc----------------CCCCCCC--CCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT----------------GGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~----------------~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
++..+|+-+|+...|||||-..+.. +..+++. .-|+......+...+......|+||+.+|.
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 3458999999999999999887761 1112222 223333333445556677888999999998
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh-----HHHHHcCCCCcCC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE-----DLMEQMGLKSITD 153 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-----~~~~~~~~~~~~~ 153 (184)
.....-...-|+.|+|+.+++.. +..-+...-+.++... ..+++.+||.|+.+..+.- |+.+.+.......
T Consensus 132 KNMItGaaqMDGaILVVaatDG~--MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGP--MPQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCC--CcchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 77777777889999999999853 2222333333444332 3467778999998653321 2222222223334
Q ss_pred CceeEEEeeeCC---CC----C---HHHHHHHHHHHh
Q 029978 154 REVCCYMISCKN---ST----N---IDTVIDWLVKHS 180 (184)
Q Consensus 154 ~~~~~~~~Sa~~---~~----~---v~~l~~~i~~~~ 180 (184)
...|++.-||+. +. | |.+|++.+-+++
T Consensus 208 d~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 208 DNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred CCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 566788877763 32 2 556666555544
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.1e-08 Score=72.18 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=83.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEee----------------CC---------------
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTK----------------GN--------------- 63 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~----------------~~--------------- 63 (184)
.+-.|.++|+-..||||+|+.++...++ ..+.||..+-.....+ ..
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 3466899999999999999999987765 2344555432221110 00
Q ss_pred ----------EEEEEEeCCCcc-----------cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC
Q 029978 64 ----------VTIKLWDLGGQP-----------RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 122 (184)
Q Consensus 64 ----------~~~~~~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (184)
-.++++||||.- +|.....=+...+|.++++||....+--.+....+..+..+ .-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----ED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cc
Confidence 158999999932 23334555678899999999998776555555555555443 44
Q ss_pred cEEEEeeCCCccCcCCHhHHHHHcC
Q 029978 123 PLLVLGNKIDKPEALSKEDLMEQMG 147 (184)
Q Consensus 123 piilv~nK~D~~~~~~~~~~~~~~~ 147 (184)
.+-+|.||.|..+. ++++.-++
T Consensus 213 kiRVVLNKADqVdt---qqLmRVyG 234 (532)
T KOG1954|consen 213 KIRVVLNKADQVDT---QQLMRVYG 234 (532)
T ss_pred eeEEEeccccccCH---HHHHHHHH
Confidence 67889999999776 77777665
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=67.86 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=59.4
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEee
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
..+..+|.+++|+|+.++..-. ...+...+... ..++|+++|+||+|+.+.....+....+... .....+++|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~--~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTR--CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCcccc--CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEee
Confidence 4567899999999998863211 12222222221 2458999999999996543223333343321 122368899
Q ss_pred eCCCCCHHHHHHHHHHHh
Q 029978 163 CKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~ 180 (184)
|+++.|++++++.+.+..
T Consensus 77 a~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 77 INNPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999999999999998764
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=73.07 Aligned_cols=160 Identities=17% Similarity=0.161 Sum_probs=91.0
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCC-Ccc-ceeeEEeeCCEEEEEEeCCC----------cccchHhHH
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIP-TVG-FNMRKVTKGNVTIKLWDLGG----------QPRFRSMWE 82 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~-t~~-~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~ 82 (184)
+.....++++.|.+++|||+|++.+.+......... +.+ ......-.-.-.+.+.|.|| ..++.....
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHH
Confidence 345568999999999999999999986443322221 111 11111112234688889999 122333444
Q ss_pred HhccC---CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCC------CCc
Q 029978 83 RYCRA---VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGL------KSI 151 (184)
Q Consensus 83 ~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~------~~~ 151 (184)
.|+.. .-.+++++|++. +++...-...+++.. .++|..+|.||+|...... .......+.. ...
T Consensus 212 ~Y~leR~nLv~~FLLvd~sv--~i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~ 286 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVDASV--PIQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV 286 (320)
T ss_pred HHHHhhhhhheeeeeeeccC--CCCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence 44422 234566677664 333333333333333 6799999999999865321 1111111111 011
Q ss_pred CCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 152 TDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
.....|++.+|+.++.|++.|+-.+.+.
T Consensus 287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 287 FLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred eeccCCceeeecccccCceeeeeehhhh
Confidence 1123467789999999999988766554
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=70.88 Aligned_cols=67 Identities=25% Similarity=0.344 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCC-----------CCCCCCccceeeEEeeCCEEEEEEeCC
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYS-----------EDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~-----------~~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+.+..++.... +.+..++++|.+|+|||||+|++.+.... ..++.|.......+ .. .+.++|||
T Consensus 113 i~eL~~~l~~~l-~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~~-~~~~~DtP 188 (190)
T cd01855 113 VEELINAIKKLA-KKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL--GN-GKKLYDTP 188 (190)
T ss_pred HHHHHHHHHHHh-hcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec--CC-CCEEEeCc
Confidence 345555555443 35678999999999999999999964321 11122222222222 21 57899999
Q ss_pred Cc
Q 029978 73 GQ 74 (184)
Q Consensus 73 g~ 74 (184)
|.
T Consensus 189 G~ 190 (190)
T cd01855 189 GI 190 (190)
T ss_pred CC
Confidence 83
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=77.01 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=60.3
Q ss_pred HHhccCCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEE
Q 029978 82 ERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
...+..+|.+++|+|+.+++ ....+..++... . ..++|+++|+||+|+..........+.+. ....++++
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~---~~~ip~ILVlNK~DLv~~~~~~~~~~~~~-----~~g~~v~~ 154 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKA-E---STGLEIVLCLNKADLVSPTEQQQWQDRLQ-----QWGYQPLF 154 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-H---HCCCCEEEEEEchhcCChHHHHHHHHHHH-----hcCCeEEE
Confidence 34578899999999998765 333344444433 2 25799999999999975422223333221 12335899
Q ss_pred eeeCCCCCHHHHHHHHHH
Q 029978 161 ISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~ 178 (184)
+||+++.|+++|++.+..
T Consensus 155 iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 155 ISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEcCCCCCHHHHhhhhcc
Confidence 999999999999998864
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-08 Score=66.77 Aligned_cols=52 Identities=29% Similarity=0.298 Sum_probs=35.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCC---CCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
+++++|.+|+|||||+|++.+...... ...|.......+ .. .+.+|||||..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--TP-TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--CC-CEEEEECCCcC
Confidence 899999999999999999997665321 222222222222 22 57899999953
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.7e-07 Score=73.83 Aligned_cols=152 Identities=21% Similarity=0.361 Sum_probs=89.3
Q ss_pred HHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCC-CCCCCCCcccee------------------------------
Q 029978 8 LNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGY-SEDMIPTVGFNM------------------------------ 56 (184)
Q Consensus 8 ~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~-~~~~~~t~~~~~------------------------------ 56 (184)
+.-+.+...+...||+|.|..++||||++|+++.... |....+++..-.
T Consensus 98 l~~i~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~ 177 (749)
T KOG0448|consen 98 LDAIDEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLA 177 (749)
T ss_pred HHHHHHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHH
Confidence 3344555567789999999999999999999994332 222333322100
Q ss_pred --------------eEEeeCC-------EEEEEEeCCCc---ccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHH
Q 029978 57 --------------RKVTKGN-------VTIKLWDLGGQ---PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHD 112 (184)
Q Consensus 57 --------------~~~~~~~-------~~~~~~D~~g~---~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 112 (184)
..+-+++ -.+.++|.||- +....-.......+|++|+|+.+.+ .+....+.+..
T Consensus 178 haL~~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~ 255 (749)
T KOG0448|consen 178 HALKPDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFH 255 (749)
T ss_pred HhcCcccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHH
Confidence 0000000 15778899984 3445556677788999999999876 33443343333
Q ss_pred HhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHH---cCCCCcCCCceeEEEeeeC
Q 029978 113 LLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQ---MGLKSITDREVCCYMISCK 164 (184)
Q Consensus 113 ~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~Sa~ 164 (184)
-... .+.-|.++.||.|....+. .+++..+ +.....+.....++++||+
T Consensus 256 ~vs~---~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 256 KVSE---EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred Hhhc---cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 2222 2344566668889865422 3444443 3333333334468889966
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.9e-08 Score=67.09 Aligned_cols=55 Identities=24% Similarity=0.331 Sum_probs=37.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCCccceeeEEeeCCEEEEEEeCCCc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (184)
...++++++|.+|+|||||++++.+..+.. ....|........+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 445899999999999999999999765521 11223222222222 45789999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-07 Score=65.59 Aligned_cols=70 Identities=16% Similarity=0.327 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhccCC--ceEEEEEcCCCCChHHHHHHHHcCCCCC---------CCCCCccceee--EEeeC--CEEEEE
Q 029978 4 WEAFLNWLRSLFFKQ--EMELSLIGLQNAGKTSLVNVIATGGYSE---------DMIPTVGFNMR--KVTKG--NVTIKL 68 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~i~iiG~~g~GKStli~~l~~~~~~~---------~~~~t~~~~~~--~~~~~--~~~~~~ 68 (184)
++.+...++....+. .|+|+++|.+|.|||||++.+....... ....|...... .+..+ ..++.+
T Consensus 29 idtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltv 108 (336)
T KOG1547|consen 29 IDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTV 108 (336)
T ss_pred HHHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEE
Confidence 566777776655554 5899999999999999999998432211 11122221111 12223 367889
Q ss_pred EeCCC
Q 029978 69 WDLGG 73 (184)
Q Consensus 69 ~D~~g 73 (184)
+||||
T Consensus 109 iDTPG 113 (336)
T KOG1547|consen 109 IDTPG 113 (336)
T ss_pred ecCCC
Confidence 99999
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.1e-08 Score=73.98 Aligned_cols=86 Identities=22% Similarity=0.206 Sum_probs=58.5
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEee
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.+..+|.+++|+|+.+++........+...... .++|+++|+||+|+.+.. ...+..+.+. ....+++++|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-----~~g~~v~~vS 148 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEEARELLALYR-----AIGYDVLELS 148 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 358899999999998887665544444333332 478999999999996321 1111222211 1224689999
Q ss_pred eCCCCCHHHHHHHHH
Q 029978 163 CKNSTNIDTVIDWLV 177 (184)
Q Consensus 163 a~~~~~v~~l~~~i~ 177 (184)
|+++.|++++++.+.
T Consensus 149 A~~g~gi~~L~~~l~ 163 (298)
T PRK00098 149 AKEGEGLDELKPLLA 163 (298)
T ss_pred CCCCccHHHHHhhcc
Confidence 999999999998775
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.4e-08 Score=72.78 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=61.8
Q ss_pred HHhccCCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEE
Q 029978 82 ERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
...+..+|.+++|+|+.++. ++..+.+|+..+.. .++|+++|+||+|+.+........... .....++++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEA-----LALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHH-----HhCCCeEEE
Confidence 34478899999999999887 77777666554433 468999999999996541111111111 112347899
Q ss_pred eeeCCCCCHHHHHHHHHH
Q 029978 161 ISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~ 178 (184)
+||+++.|+++|++.+..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999987753
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-08 Score=78.16 Aligned_cols=99 Identities=28% Similarity=0.410 Sum_probs=64.2
Q ss_pred cccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-CHhHHHHHcC--CCC
Q 029978 74 QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKEDLMEQMG--LKS 150 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~--~~~ 150 (184)
++++......+.+.++++++|+|+.+... .....+.... .+.|+++|+||+|+.+.. ..+++.+.+. ...
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence 56778888888899999999999977542 1112222222 257999999999997543 2222222111 000
Q ss_pred cCCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 151 ITDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
.......++++||+++.|++++++.+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 00011248899999999999999999765
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=67.06 Aligned_cols=157 Identities=22% Similarity=0.327 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCC---CCCccceeeEEeeCCEEEEEEeCCCcccch---HhHHHhccCCCEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDM---IPTVGFNMRKVTKGNVTIKLWDLGGQPRFR---SMWERYCRAVSAIVY 93 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---~~~~~~~~~~~~~i~ 93 (184)
-+|.+.|...+||||+-....++.-|.+. ..|......++...-+.+++||.|||..+- .-..+.++++.++++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 55999999999999998877655433321 112222222233455789999999987652 234667899999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcC--CCCCCCcEEEEeeCCCccCcCCH----hHHHHHcC----CCCcCCCceeEEEeee
Q 029978 94 VVDAADYDNLPVSRSELHDLLSK--PSLNGIPLLVLGNKIDKPEALSK----EDLMEQMG----LKSITDREVCCYMISC 163 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~Sa 163 (184)
|+|+.+ .+.+....+.....+ .-.+++.+-+.+.|.|-..++.. .++.++.+ -.........++.+|-
T Consensus 108 vIDaQd--dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 108 VIDAQD--DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEechH--HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 999975 445555554444332 22378888999999998765322 22222211 1111223556777887
Q ss_pred CCCCCHHHHHHHHHHH
Q 029978 164 KNSTNIDTVIDWLVKH 179 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~ 179 (184)
.+.. |=+.|..+++.
T Consensus 186 yDHS-IfEAFSkvVQk 200 (347)
T KOG3887|consen 186 YDHS-IFEAFSKVVQK 200 (347)
T ss_pred cchH-HHHHHHHHHHH
Confidence 7654 55555544443
|
|
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4e-08 Score=73.62 Aligned_cols=153 Identities=20% Similarity=0.285 Sum_probs=91.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCC-----------------------CCCccceee----E----------Eee
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDM-----------------------IPTVGFNMR----K----------VTK 61 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~-----------------------~~t~~~~~~----~----------~~~ 61 (184)
+++++++|...+|||||+-.+..+...... ..+.+++-. . .+.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 488999999999999999988744321111 111111110 0 111
Q ss_pred CCEEEEEEeCCCcccchHhHHHhc--cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~ 139 (184)
..--+.++|.+|+.+|....-..+ -..|+..+++++...-. ........+.. .-++|.+++++|+|+.+....
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~--~tTrEHLgl~~---AL~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGIT--WTTREHLGLIA---ALNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCc--cccHHHHHHHH---HhCCCeEEEEEeeccccchhH
Confidence 123588999999998876443333 34688888998875322 22222222221 247999999999999876332
Q ss_pred hH----HHHHcC---C------------------CCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 140 ED----LMEQMG---L------------------KSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 140 ~~----~~~~~~---~------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+. +.+.+. . ......-.|+|.+|+-+|.|++-+...+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 22 222111 0 0111224689999999999988766544
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.1e-07 Score=68.10 Aligned_cols=114 Identities=18% Similarity=0.309 Sum_probs=66.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCC----------CCCCccceeeE--Ee--eCCEEEEEEeCCCcccc-----
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSED----------MIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRF----- 77 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~----------~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~----- 77 (184)
.-.++|+++|++|.|||||+|+|++...... ..+|+...... +. .....++++||||.-++
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 3469999999999999999999996532221 12232222222 22 22367889999993221
Q ss_pred ---------hHhHHHh--------------ccCCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCc
Q 029978 78 ---------RSMWERY--------------CRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDK 133 (184)
Q Consensus 78 ---------~~~~~~~--------------~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~ 133 (184)
..+...+ -...|++++.+..+.. ++..+. ..+..+. ..+-+|-|+-|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh-----cccCeeeeeecccc
Confidence 1111111 1235788888887642 223222 2233333 34667888889998
Q ss_pred cCc
Q 029978 134 PEA 136 (184)
Q Consensus 134 ~~~ 136 (184)
.-.
T Consensus 175 lT~ 177 (373)
T COG5019 175 LTD 177 (373)
T ss_pred CCH
Confidence 654
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.9e-08 Score=65.28 Aligned_cols=82 Identities=20% Similarity=0.198 Sum_probs=53.3
Q ss_pred CEEEEEEeCCCCCChHHHHHHHH-HHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 89 SAIVYVVDAADYDNLPVSRSELH-DLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
|++++|+|+.++.+.... ++. ..... .++|+++|+||+|+.+.....+....+... ....++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRHS----YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHhh----CCceEEEEeccCCc
Confidence 689999999876544321 222 22222 468999999999996542222222222111 12358899999999
Q ss_pred CHHHHHHHHHHH
Q 029978 168 NIDTVIDWLVKH 179 (184)
Q Consensus 168 ~v~~l~~~i~~~ 179 (184)
|++++.+.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988764
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.5e-08 Score=64.63 Aligned_cols=68 Identities=24% Similarity=0.369 Sum_probs=42.5
Q ss_pred HHHHHHHHhhcc--CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEeeCCEEEEEEeCCC
Q 029978 5 EAFLNWLRSLFF--KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGG 73 (184)
Q Consensus 5 ~~~~~~~~~~~~--~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g 73 (184)
+.+...+..... ....+++++|.+|+||||+++++.+.. .....++.+.... .....+..+.+|||||
T Consensus 85 ~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 85 KILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 344444444322 346789999999999999999998543 3333444443221 1112233689999998
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.8e-08 Score=66.11 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=63.2
Q ss_pred CCcc-cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC
Q 029978 72 GGQP-RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS 150 (184)
Q Consensus 72 ~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~ 150 (184)
||+. +........+..+|.+++|+|++++..... ..+.... .+.|+++|+||+|+.+.....+..+.+..
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-- 73 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-- 73 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh--
Confidence 5543 445667788899999999999987543221 1111111 25799999999999643211122121111
Q ss_pred cCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 151 ITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
....++.+||+++.|++++.+.+.+.+
T Consensus 74 ---~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 ---KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 123578999999999999999998864
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.2e-08 Score=72.92 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=62.0
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
...+|.+++|++.....++..+..|+.... ..++|.++|+||+|+.+....+...+.... ......+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCC
Confidence 456899999999987778888777765332 256899999999999764321122221111 11123479999999
Q ss_pred CCCCHHHHHHHHHHH
Q 029978 165 NSTNIDTVIDWLVKH 179 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~ 179 (184)
++.|+++|++.+...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999988653
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.6e-08 Score=70.88 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=66.0
Q ss_pred CCcc-cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC
Q 029978 72 GGQP-RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS 150 (184)
Q Consensus 72 ~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~ 150 (184)
|||. +........+..+|++++|+|+..+.+... ..+.... .+.|+++|+||+|+.+.....+..+.+..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-- 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-- 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH--
Confidence 6665 345567788899999999999987543222 1222222 25799999999999643222222222211
Q ss_pred cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 151 ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
...+++.+||+++.|++++.+.+.+.+.
T Consensus 76 ---~~~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 76 ---KGIKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 1235899999999999999999987765
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-07 Score=71.61 Aligned_cols=113 Identities=17% Similarity=0.243 Sum_probs=65.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCC---------CCCCccceeeE--Ee--eCCEEEEEEeCCCcccc-------
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSED---------MIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRF------- 77 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~---------~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~------- 77 (184)
..++++++|++|.|||||+|+|+....... ...|....... +. +-.+.++++||||..+.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 359999999999999999999886543221 22233322222 22 23367889999993221
Q ss_pred -------hHhHHH-----------hcc--CCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 78 -------RSMWER-----------YCR--AVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 78 -------~~~~~~-----------~~~--~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
...... ... ..|++++.+..+.. +...+. ..+..+. ..+.+|-|+-|+|..-.
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~-----~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS-----KKVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh-----ccccccceeeccccCCH
Confidence 011111 122 56889998887652 222222 1222222 35677888889998654
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=69.96 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=38.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC-C--CCCCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY-S--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
...++++++|.||+|||||+|++.+... . ..++.|..... +... ..+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~~-~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW--IKLG-KGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE--EEeC-CcEEEEECCCcC
Confidence 3568999999999999999999997543 2 22223333322 2222 258899999953
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=69.58 Aligned_cols=54 Identities=24% Similarity=0.325 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (184)
..++++++|.||+|||||+|++.+... ...+..|........ . -.+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL--S-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe--C-CCEEEEECCCc
Confidence 458899999999999999999986543 222333333332222 2 25789999996
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.9e-07 Score=69.28 Aligned_cols=80 Identities=21% Similarity=0.220 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC-CCC--CCCCccceeeEEe--e---------------CCEEEEEEeCCCccc---
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY-SED--MIPTVGFNMRKVT--K---------------GNVTIKLWDLGGQPR--- 76 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~-~~~--~~~t~~~~~~~~~--~---------------~~~~~~~~D~~g~~~--- 76 (184)
++++|+|.|++|||||.+.+++... +.. +..|.......+. . ....+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999997665 322 2233433222211 1 224689999999432
Q ss_pred ----chHhHHHhccCCCEEEEEEeCCC
Q 029978 77 ----FRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 77 ----~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
........++.+|+++.|++..+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 23345566789999999999864
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.5e-07 Score=62.58 Aligned_cols=54 Identities=28% Similarity=0.326 Sum_probs=37.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC-C--CCCCCCccceeeEEeeCCEEEEEEeCCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY-S--EDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g 73 (184)
....+++++|.+|+|||||+|.+.+... . .....|......... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCC
Confidence 4568899999999999999999996542 2 223334443333332 3588999998
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.9e-08 Score=74.18 Aligned_cols=158 Identities=22% Similarity=0.224 Sum_probs=100.1
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHH---------------------------------cCCCCCCCCCCccceeeEEeeC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIA---------------------------------TGGYSEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~---------------------------------~~~~~~~~~~t~~~~~~~~~~~ 62 (184)
.+..++++++|+..+||||+-..+. ......+...|++.....+...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 4567999999999999999987776 1112233445666666667777
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC---ChHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NLPVS-RSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
..++.+.|+||+..|-...-.-..++|..++|+++...+ .|... +..-..++.... .-...|+++||+|-+-..-
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCccCc
Confidence 789999999999988776666677889988888885422 12111 111111111111 2357899999999765321
Q ss_pred ----HhHHHHHcC-----CCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 139 ----KEDLMEQMG-----LKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 139 ----~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
-++..+.+. +.........++++|..+|.++++..+
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 122222211 122223456799999999999987653
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.9e-08 Score=64.31 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~ 42 (184)
-.++++|++|||||||+|.+...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57799999999999999999965
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-07 Score=68.52 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=66.1
Q ss_pred CCCcc-cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCC
Q 029978 71 LGGQP-RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK 149 (184)
Q Consensus 71 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~ 149 (184)
.|||. +-.......+..+|++++|+|+..+.+... ..+..... +.|+++|.||+|+.+....++..+.+..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~~- 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFEE- 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHHH-
Confidence 46765 334567778899999999999987644322 22233322 5799999999999643212222222211
Q ss_pred CcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 150 SITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
...+++.+||+++.|++++.+.+.+.+.
T Consensus 79 ----~~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 79 ----QGIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred ----cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 1235789999999999999999887764
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.6e-07 Score=71.02 Aligned_cols=139 Identities=12% Similarity=0.163 Sum_probs=81.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
++++.++++||||+||||||+.+...-.........+. ...+.....++.+.++|.+ .........-+|.+++++|
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP-iTvvsgK~RRiTflEcp~D---l~~miDvaKIaDLVlLlId 142 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP-ITVVSGKTRRITFLECPSD---LHQMIDVAKIADLVLLLID 142 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc-eEEeecceeEEEEEeChHH---HHHHHhHHHhhheeEEEec
Confidence 46789999999999999999999843222111111111 1223456678999999832 2223445567899999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCC-HhHHHHHcCCCCc--CCCceeEEEeeeC
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALS-KEDLMEQMGLKSI--TDREVCCYMISCK 164 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~ 164 (184)
.+-. |....-.+..++.. .+.| ++-|+|+.|+..... ...+.+.+.-..+ ....+.+|..|.-
T Consensus 143 gnfG--fEMETmEFLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 143 GNFG--FEMETMEFLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred cccC--ceehHHHHHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 8753 22222233444444 3455 455889999986532 3333333332221 2334556666654
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.7e-07 Score=69.55 Aligned_cols=56 Identities=27% Similarity=0.360 Sum_probs=39.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
....+++++|-|+||||||||+|.+... ...++.|.+......+. .+.++||||.-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCcC
Confidence 3458899999999999999999997554 23333344444443333 38899999943
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-06 Score=61.25 Aligned_cols=82 Identities=21% Similarity=0.144 Sum_probs=51.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcC--CCCCC---CCCCccceeeEEee---CCEEEEEEeCCCcccc------hHhHHHh
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATG--GYSED---MIPTVGFNMRKVTK---GNVTIKLWDLGGQPRF------RSMWERY 84 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~--~~~~~---~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~------~~~~~~~ 84 (184)
-.-|+|+|++++|||||+|.+.+. .+... ...|.+.-...... .+..+.++||+|.... .......
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~ 86 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA 86 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence 345789999999999999999987 55422 23344433222222 3578999999995422 1112222
Q ss_pred cc--CCCEEEEEEeCCCC
Q 029978 85 CR--AVSAIVYVVDAADY 100 (184)
Q Consensus 85 ~~--~~~~~i~v~d~~~~ 100 (184)
+. -++++|+..+....
T Consensus 87 l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 87 LATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHhCEEEEeccCccc
Confidence 23 37888888777643
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-07 Score=69.42 Aligned_cols=54 Identities=22% Similarity=0.299 Sum_probs=34.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC------CC----CCCCccceeeEEeeCCEEEEEEeCCCcccc
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS------ED----MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~------~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (184)
.++++|.+|||||||+|+|++.... .. ...|.......+..+ ..++||||...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 3789999999999999999854321 11 112333333344333 248999997653
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.9e-07 Score=66.87 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=73.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC------CC---CCCCCC------------CccceeeEE-----------------
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG------GY---SEDMIP------------TVGFNMRKV----------------- 59 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~------~~---~~~~~~------------t~~~~~~~~----------------- 59 (184)
++-.++++|++|+||||++..+... .. ..+... ..+..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999998721 00 000000 000011100
Q ss_pred eeCCEEEEEEeCCCcccch----HhHHHh--------ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 029978 60 TKGNVTIKLWDLGGQPRFR----SMWERY--------CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 127 (184)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~----~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 127 (184)
...++.+.++||||..... ...... ....+..++|+|++... ..+. ........ --+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~-~a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALS-QAKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHH-HHHHHHhh----CCCCEEE
Confidence 1245689999999964321 111111 12467789999998532 2222 22222211 1245688
Q ss_pred eeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 128 GNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 128 ~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
.||.|....- ..-.+.... ..|+.+++ +|.+++++-
T Consensus 266 lTKlD~t~~~G~~l~~~~~~--------~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADEL--------GIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCccHHHHHHHHH--------CCCEEEEe--CCCChhhCc
Confidence 9999954321 122222222 23577777 667777664
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.4e-08 Score=66.71 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=24.5
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...++-.++|+||+|||||||++.+.+
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 34556777899999999999999999974
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=8e-07 Score=67.16 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=50.9
Q ss_pred CEEEEEEeCCCcccc----hHhHHHhc--cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 63 NVTIKLWDLGGQPRF----RSMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
++.+.++||+|.... ........ ...+.+++|+|+..... .......+... . -+--++.||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~---~-~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEA---V-GIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhc---C-CCCEEEEeeecCCCC
Confidence 356899999996532 12222222 34688899999875332 22222222211 1 134678899998543
Q ss_pred CC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 137 LS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 137 ~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
-- .-.+.... ..|+.+++ +|.+++++.
T Consensus 295 ~G~~ls~~~~~--------~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 GGAALSIAYVI--------GKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ccHHHHHHHHH--------CcCEEEEe--CCCChhhcc
Confidence 21 12222222 23567776 678887765
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.2e-07 Score=59.99 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=49.2
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEE
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
....+..+|++++|+|+.++.+... ..+..++.... .++|+++|+||+|+.+.....+..+.+.. ....+++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~-----~~~~ii~ 76 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKK-----EGIVVVF 76 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHh-----cCCeEEE
Confidence 4566788999999999988664332 12222222211 46899999999999654222222222211 1235889
Q ss_pred eeeCCCCC
Q 029978 161 ISCKNSTN 168 (184)
Q Consensus 161 ~Sa~~~~~ 168 (184)
+||+++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99998754
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-06 Score=65.37 Aligned_cols=82 Identities=23% Similarity=0.376 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCC--CCccceeeEEe-----------------eCCEEEEEEeCCCccc--
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMI--PTVGFNMRKVT-----------------KGNVTIKLWDLGGQPR-- 76 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~--~t~~~~~~~~~-----------------~~~~~~~~~D~~g~~~-- 76 (184)
..++++|+|.|+||||||.|.++......... .|+......+. .....+++.|++|-.+
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 56899999999999999999999776654433 35543333221 1235799999998332
Q ss_pred -----chHhHHHhccCCCEEEEEEeCCC
Q 029978 77 -----FRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 77 -----~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
..+...+.++.+|+++-|+++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 34445566788999999988864
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.1e-07 Score=60.50 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=36.9
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 132 (184)
.+.+.++||+|..... ..++..+|-++++....-.+.+.-+. ..+.. .--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~~------~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK---AGIME------IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh---hhHhh------hcCEEEEeCCC
Confidence 4678899998865322 34778889888888877433333221 12222 33488999988
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=6e-07 Score=68.89 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCC--------CCCCCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGY--------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
.+++...+... .++.++.++|.+|||||||+|++..... ...++.|........+.+ ..++||||..
T Consensus 147 I~eL~~~I~~~--~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 147 IDELLEAIEKY--REGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred HHHHHHHHHHh--cCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 34555555443 2456899999999999999999985321 122233333332223222 4789999963
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.6e-07 Score=68.97 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCC--------CCCCCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGY--------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
.+++...+... .++.++.++|.+|+|||||+|++++... ...+..|.... .+... -.+.++||||..
T Consensus 141 v~eL~~~l~~~--~~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~-~~~~l~DtPG~~ 215 (360)
T TIGR03597 141 IDELLDKIKKA--RNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLD-DGHSLYDTPGII 215 (360)
T ss_pred HHHHHHHHHHH--hCCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeC-CCCEEEECCCCC
Confidence 34555555444 2357899999999999999999996422 12222233222 22221 135799999964
Q ss_pred c
Q 029978 76 R 76 (184)
Q Consensus 76 ~ 76 (184)
.
T Consensus 216 ~ 216 (360)
T TIGR03597 216 N 216 (360)
T ss_pred C
Confidence 3
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-06 Score=59.37 Aligned_cols=21 Identities=48% Similarity=0.585 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 029978 22 LSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~ 42 (184)
+.++|+.|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999998854
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.5e-07 Score=67.80 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=33.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC---CCC-------CCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSE---DMI-------PTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~---~~~-------~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
.++|+|++|||||||+|.|....... ... .|..........+ ..++||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 47999999999999999998543211 111 2333333333222 26889999643
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-06 Score=67.60 Aligned_cols=99 Identities=23% Similarity=0.310 Sum_probs=57.8
Q ss_pred ccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCC--CCc
Q 029978 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGL--KSI 151 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~--~~~ 151 (184)
+.+.............+++|+|+.+... .....+..+. .+.|+++|+||+|+.+... .+++.+.... ...
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 3455544444333448999999987542 1122222222 2579999999999975322 2222211110 000
Q ss_pred CCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 152 TDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
......++.+||+++.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 00112488999999999999999997754
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-05 Score=52.90 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+..++|+|.|+|||||||++.++.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHH
Confidence 457899999999999999999887
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.4e-06 Score=72.98 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=66.5
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCCC----CCCccc-eeeEEee-CCEEEEEEeCCCcc--------cchHhHHHh---
Q 029978 22 LSLIGLQNAGKTSLVNVIATGGYSEDM----IPTVGF-NMRKVTK-GNVTIKLWDLGGQP--------RFRSMWERY--- 84 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~~~~~~~----~~t~~~-~~~~~~~-~~~~~~~~D~~g~~--------~~~~~~~~~--- 84 (184)
.+++|++|+||||++..- +..++-.. ..+.+. ...++++ -.-...++||+|.. .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~ 192 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL 192 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence 589999999999999986 44443221 111111 0111111 11245688999921 122233333
Q ss_pred ------ccCCCEEEEEEeCCCCCC--h-------HHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 85 ------CRAVSAIVYVVDAADYDN--L-------PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 85 ------~~~~~~~i~v~d~~~~~~--~-------~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
-+..+++|+++|+.+.-. - ..++..+.++..... ...||.+++||+|+...
T Consensus 193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhcC
Confidence 234799999999976421 1 233444555554444 68999999999999753
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-05 Score=60.61 Aligned_cols=91 Identities=18% Similarity=0.087 Sum_probs=50.8
Q ss_pred EEEEEEeCCCcccchHhHHHhcc--------CCCEEEEEEeCCCCCChHH-HHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCR--------AVSAIVYVVDAADYDNLPV-SRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
....+++|.|-.........+.. ..|.++-|+|+.+...... ......+-+.. .-++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCC
Confidence 45667888886555444443332 2467999999987543222 22222222222 348999999998
Q ss_pred CcCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 135 EALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+....+.....+. ..+..++++++|.
T Consensus 159 ~~~~l~~l~~~l~---~lnp~A~i~~~~~ 184 (323)
T COG0523 159 DAEELEALEARLR---KLNPRARIIETSY 184 (323)
T ss_pred CHHHHHHHHHHHH---HhCCCCeEEEccc
Confidence 8754333333332 2233446777766
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-06 Score=63.47 Aligned_cols=53 Identities=21% Similarity=0.175 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC------CCC----CCCCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY------SED----MIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~------~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
..++++|++|+|||||+|++.+... +.. ...|......... + -.++||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~-~---~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH-G---GLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC-C---cEEEeCCCccc
Confidence 3679999999999999999985422 111 1133344444442 2 26889999754
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.6e-06 Score=62.77 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=51.7
Q ss_pred CCEEEEEEeCCCcccchHh----HHH---hc-----cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 029978 62 GNVTIKLWDLGGQPRFRSM----WER---YC-----RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 129 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~----~~~---~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 129 (184)
.++.+.++||||....... ... .. ..+|..++|+|++.. .... .....+.+.. -+.-+|.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~-~~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNAL-EQAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHH-HHHHHHHhhC----CCCEEEEE
Confidence 4578999999996542211 111 11 237889999999742 2222 2223332221 14568899
Q ss_pred CCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 130 KIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 130 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|.|....-- .-.+....+ .|+.+++ +|.+++++-
T Consensus 226 KlDe~~~~G~~l~~~~~~~--------~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYELK--------LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCccHHHHHHHHHC--------cCEEEEe--CCCChHhCc
Confidence 999754321 222222222 3566666 566676654
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.7e-06 Score=67.23 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=60.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc-----C-CC---CCC-CC-----------CCccceeeE-Ee----------------
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT-----G-GY---SED-MI-----------PTVGFNMRK-VT---------------- 60 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~-----~-~~---~~~-~~-----------~t~~~~~~~-~~---------------- 60 (184)
.-.|+++|++||||||++..+.. + .. ..+ +. ...+..+.. ..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45689999999999999998861 1 10 010 00 000111110 00
Q ss_pred eCCEEEEEEeCCCcccch----HhHHHh--ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 61 KGNVTIKLWDLGGQPRFR----SMWERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
...+.+.++||+|..... ...... ....+.+++|+|+.....-.. ....+.+. --+.-++.||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS----VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc----cCCcEEEEECccCC
Confidence 125789999999964332 222222 234678999999875432222 22222111 13567888999974
Q ss_pred C
Q 029978 135 E 135 (184)
Q Consensus 135 ~ 135 (184)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 3
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.4e-07 Score=62.84 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
..++++|++||||||.+-++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHH
Confidence 357899999999999998887
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.2e-06 Score=62.23 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=33.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC------CC----CCCCCCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGG------YS----EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~------~~----~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
..+++|++|||||||+|++.... .. .....|......++..+. .++||||...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~ 228 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRS 228 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCc
Confidence 67899999999999999998421 11 112223333444443232 4679999765
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-05 Score=61.94 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=54.3
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
...+|.+++|+++...-+...+.. +..+... .++|.++|+||+|+.+. .++..+.+... ....+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr-~L~~a~~---~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIER-YLALAWE---SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHH-HHHHHHH---cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 467899999999964333333333 3333322 46788999999999754 12222222111 234568999999
Q ss_pred CCCCHHHHHHHHH
Q 029978 165 NSTNIDTVIDWLV 177 (184)
Q Consensus 165 ~~~~v~~l~~~i~ 177 (184)
++.|+++|.+.+.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999998874
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.1e-06 Score=61.82 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
..++++|++|+|||||+|.+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 578999999999999999998643
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.8e-05 Score=58.54 Aligned_cols=80 Identities=23% Similarity=0.280 Sum_probs=56.0
Q ss_pred EEEEEeCCCcc-------------cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 029978 65 TIKLWDLGGQP-------------RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131 (184)
Q Consensus 65 ~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 131 (184)
++.+.|.||.- ....+...+....+++|+|+.-... ...+...-++.......+...|+|.||+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV---DAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV---DAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc---chhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 57788999921 2234566788899999999976533 3344555566666666788999999999
Q ss_pred CccCc--CCHhHHHHHcC
Q 029978 132 DKPEA--LSKEDLMEQMG 147 (184)
Q Consensus 132 D~~~~--~~~~~~~~~~~ 147 (184)
|+.+. .+++.+.+.+.
T Consensus 490 DlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIE 507 (980)
T ss_pred chhhhccCCHHHHHHHHh
Confidence 99765 34566666554
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.4e-06 Score=63.43 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++-.++++|++|+||||++.++..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999999973
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.6e-06 Score=56.95 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=38.4
Q ss_pred CEEEEEEeCCCcccc----hHhHHHhc--cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 63 NVTIKLWDLGGQPRF----RSMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
.+.+.++|++|.... ......+. ...+.+++|++..... ........+.+.. + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 456888999996422 22222222 3478899999986432 2223334433322 2 35677799997653
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.18 E-value=2e-06 Score=59.50 Aligned_cols=69 Identities=19% Similarity=0.155 Sum_probs=38.6
Q ss_pred CEEEEEEeCCCcccchHh-----HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC
Q 029978 63 NVTIKLWDLGGQPRFRSM-----WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~-----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 137 (184)
.....++++.|....... .....-..+.++.|+|+.+..........+...+... -++++||+|+.+..
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A------DvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA------DVIVLNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc------CEEEEeccccCChh
Confidence 346677888885443332 0111234578999999976432233333334444433 38899999998764
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.1e-06 Score=61.08 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+..++++|++|+|||||+|.+.+.
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999854
|
|
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.4e-06 Score=57.09 Aligned_cols=112 Identities=15% Similarity=0.244 Sum_probs=59.7
Q ss_pred EEEEEeCCCcccchH---hHHHh---cc--CC-CEEEEEEeCCCC-CC---hHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 029978 65 TIKLWDLGGQPRFRS---MWERY---CR--AV-SAIVYVVDAADY-DN---LPVSRSELHDLLSKPSLNGIPLLVLGNKI 131 (184)
Q Consensus 65 ~~~~~D~~g~~~~~~---~~~~~---~~--~~-~~~i~v~d~~~~-~~---~~~~~~~~~~~~~~~~~~~~piilv~nK~ 131 (184)
..-++|.|||-.... ..+.. +. .. -+++++.+..-. ++ +......+..+.. -.+|.|=|.+|+
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsKM 174 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSKM 174 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhHH
Confidence 477899999854321 11111 11 22 246667766421 11 1222222333333 368999999999
Q ss_pred CccCcCCHhHHHHHcCCCCcC---------------------------CCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 132 DKPEALSKEDLMEQMGLKSIT---------------------------DREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 132 D~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
|+.....++++.+.+.-.... ..-..+++..+.+..+|+.++..|-.++
T Consensus 175 DLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 175 DLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 998875555554444321110 0123566666666777777776665544
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=57.24 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=24.3
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..+++--++|+||+|||||||++.+.+
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34556777799999999999999998873
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.7e-05 Score=58.68 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=37.5
Q ss_pred EEEEEEeCCCcccchHhHHHhcc--------CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCR--------AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
....+++|.|..........+.. ..+.++.|+|+.+......-......-.. ..-++|+||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~------~AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG------YADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH------hCCEEEEeccccCC
Confidence 45567888887655544444321 24779999999753321110111111111 23488999999976
Q ss_pred c
Q 029978 136 A 136 (184)
Q Consensus 136 ~ 136 (184)
.
T Consensus 165 ~ 165 (318)
T PRK11537 165 E 165 (318)
T ss_pred H
Confidence 4
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.8e-05 Score=60.79 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
...|+++|++|+||||++..+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 4678999999999999999996
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00019 Score=49.42 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
++++++|++|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999865
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.4e-05 Score=58.11 Aligned_cols=70 Identities=13% Similarity=0.244 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhccC--CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCC----ccceeeEEe--eCC--EEEEEEeCCC
Q 029978 4 WEAFLNWLRSLFFK--QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPT----VGFNMRKVT--KGN--VTIKLWDLGG 73 (184)
Q Consensus 4 ~~~~~~~~~~~~~~--~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t----~~~~~~~~~--~~~--~~~~~~D~~g 73 (184)
|++|...+-+.... ..++|.-+|..|.|||||++.+.+-.+...+.+. +.....+++ ..+ .++.+.||.|
T Consensus 25 FdsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 25 FDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred cccChHHHHHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 45555555444444 4589999999999999999999988887665443 222222222 222 5788999998
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.1e-05 Score=57.38 Aligned_cols=112 Identities=14% Similarity=0.172 Sum_probs=60.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccc---eeeE-------------------------------EeeCC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGF---NMRK-------------------------------VTKGN 63 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~---~~~~-------------------------------~~~~~ 63 (184)
++-.|+++||.||||||-+-+|...-........++. +.++ ....+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 3677899999999999998888732221111111110 0000 01134
Q ss_pred EEEEEEeCCCcccch----HhHHHhccCC--CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 64 VTIKLWDLGGQPRFR----SMWERYCRAV--SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~----~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
+++.++||.|...+. .....++..+ .-+.++++++. ....+...+..+.. .++. =+++||.|....
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~----~~i~-~~I~TKlDET~s 353 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSL----FPID-GLIFTKLDETTS 353 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhcc----CCcc-eeEEEcccccCc
Confidence 689999999966442 3344444333 33556777764 22344444443322 2222 356799997543
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00015 Score=55.92 Aligned_cols=24 Identities=13% Similarity=0.407 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.-.+=++++||..+|||||+.+|.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHH
Confidence 345778999999999999999997
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.6e-05 Score=59.79 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
..+-.++++|++|+||||++..|.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 456788999999999999998887
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.1e-05 Score=62.98 Aligned_cols=52 Identities=23% Similarity=0.299 Sum_probs=41.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCC---CCCCCCCCccceeeEEeeCCEEEEEEeCCC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGG---YSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g 73 (184)
.+.|++||-|||||||+||.|.+.. ....++.|..+-+..++. .+.+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCC
Confidence 4889999999999999999999764 456677777777666544 377889999
|
|
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.9e-05 Score=60.78 Aligned_cols=119 Identities=20% Similarity=0.236 Sum_probs=76.1
Q ss_pred HHHhhccCC--ceEEEEEcCCCCChHHHHHHHHcC------------CCC------CCCCCCccceeeE-----------
Q 029978 10 WLRSLFFKQ--EMELSLIGLQNAGKTSLVNVIATG------------GYS------EDMIPTVGFNMRK----------- 58 (184)
Q Consensus 10 ~~~~~~~~~--~~~i~iiG~~g~GKStli~~l~~~------------~~~------~~~~~t~~~~~~~----------- 58 (184)
-.+.++.++ --++.++.+...|||||-..+... +|. .+..-|+......
T Consensus 8 ~vr~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~ 87 (842)
T KOG0469|consen 8 QVRELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLK 87 (842)
T ss_pred HHHHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHH
Confidence 344444433 356789999999999999999721 111 1111122211111
Q ss_pred -----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCc
Q 029978 59 -----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133 (184)
Q Consensus 59 -----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 133 (184)
.+...+-++++|.||+.+|.+..-..++-.|+.++|+|.-+.-..+.. ..+.+.+. .++.=+++.||+|.
T Consensus 88 ~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~----ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 88 FIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA----ERIKPVLVMNKMDR 162 (842)
T ss_pred HhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHH----hhccceEEeehhhH
Confidence 123457899999999999999999999999999999998764433332 22222222 23444678999996
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.3e-05 Score=58.46 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+..-++++|-+|+||||-+-++.
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA 160 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLA 160 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHH
Confidence 46778999999999999998887
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.1e-05 Score=61.48 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=18.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
...|+++|++|+||||++-.+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 4668899999999999766665
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.5e-05 Score=57.65 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
...++++|++||||||++.++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA 244 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLA 244 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3558899999999999999987
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.8e-05 Score=58.76 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++-.++++|++|+||||++..+..
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00015 Score=55.31 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=18.0
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
..+.|.-|+|||||+++++.
T Consensus 7 ~iltGFLGaGKTTll~~ll~ 26 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQ 26 (341)
T ss_pred EEEEECCCCCHHHHHHHHHh
Confidence 47889999999999999984
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.2e-05 Score=59.94 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++..|+++|++|+||||++..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45678999999999999998886
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.4e-05 Score=60.68 Aligned_cols=68 Identities=26% Similarity=0.375 Sum_probs=45.9
Q ss_pred HHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCC-CCCCCCCccceeeEEeeCCEEEEEEeCCCc
Q 029978 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGY-SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (184)
-+-+|-+.-..+..++++|+|-|++||||+||+|..... +....|++......+. .+-.+.+.|.||.
T Consensus 239 ~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~-Ldk~i~llDsPgi 307 (435)
T KOG2484|consen 239 VLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK-LDKKIRLLDSPGI 307 (435)
T ss_pred HhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee-ccCCceeccCCce
Confidence 344444555567789999999999999999999997654 3333344333333333 2336888999984
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.3e-05 Score=55.10 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=26.4
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
|+...++-.++|+|++|||||||.+.+.+-.
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 4666778889999999999999999998543
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00039 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
+..++++|++|+||||.+..+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA 195 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLA 195 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999998886
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.6e-05 Score=56.47 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=24.6
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++..+++--++++|++|+|||||++.+.+.
T Consensus 25 s~~i~~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 25 SFEVEPGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 345566667899999999999999999843
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.9e-05 Score=52.68 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=38.5
Q ss_pred EEEEEeCC-CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 65 TIKLWDLG-GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 65 ~~~~~D~~-g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
.+.+.||- |.+.+. +...+++|.+++|+|.+.. ++... +...++.+... =.++.+|.||+|..
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~ta-eri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTA-ERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCcHH-HHHHH-HHHHHHHHHhC--CceEEEEEeeccch
Confidence 45555653 444433 3456789999999998742 33332 23334433322 27899999999965
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.8e-05 Score=60.06 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=18.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
+..++++|++|+||||++-.+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 4668899999999999966664
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.2e-05 Score=58.06 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++-.++++|+.|+||||++..+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 345668999999999999999887
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.2e-05 Score=44.13 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
..+|.|++|+|||||++.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999886
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00016 Score=53.27 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=30.0
Q ss_pred chHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 2 GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
|+.+.....++.......-.++|.|++|+||||+++.++..
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 45555555555555444556899999999999999998743
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=2e-05 Score=50.75 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|+|.|++||||||+++.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999984
|
... |
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.9e-05 Score=65.10 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=65.9
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCC----CCCCccceeeEEee-CCEEEEEEeCCCcc--------cchHhHHH-----
Q 029978 22 LSLIGLQNAGKTSLVNVIATGGYSED----MIPTVGFNMRKVTK-GNVTIKLWDLGGQP--------RFRSMWER----- 83 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~~~D~~g~~--------~~~~~~~~----- 83 (184)
-+|+|++|+||||++..- +..|+-. .....+..+.++++ -.-.-.++||.|.. .....|..
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 489999999999998754 2333211 11111122223321 11246678999822 12233332
Q ss_pred ----hccCCCEEEEEEeCCCCCC---------hHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 84 ----YCRAVSAIVYVVDAADYDN---------LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 84 ----~~~~~~~~i~v~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
-.+..+++|+.+|+.+.-. ...++..+.++..... ...|+.+++||.|+.+.
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEeccccccc
Confidence 2455789999999875321 1223444555554433 67999999999999773
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.5e-05 Score=55.98 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=24.3
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...++=-|+|+|++|||||||++.+.+
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34556666789999999999999999985
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00013 Score=54.00 Aligned_cols=89 Identities=19% Similarity=0.157 Sum_probs=60.0
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
....|-.++++++.+++--......+.-+... .++.-++++||+|+.+.+.... +..+........+.+.+|++
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~---~~~~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV---KELLREYEDIGYPVLFVSAK 150 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH---HHHHHHHHhCCeeEEEecCc
Confidence 34467888889998887555555555444443 4677788899999987754442 11111222344579999999
Q ss_pred CCCCHHHHHHHHHHH
Q 029978 165 NSTNIDTVIDWLVKH 179 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~ 179 (184)
++.+++++.+.+...
T Consensus 151 ~~~~~~~l~~~l~~~ 165 (301)
T COG1162 151 NGDGLEELAELLAGK 165 (301)
T ss_pred CcccHHHHHHHhcCC
Confidence 999999999887643
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.9e-05 Score=57.31 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=24.5
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..+++--++|+||+|||||||++.+.+
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45556677789999999999999999984
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.6e-05 Score=54.81 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=35.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC--------CCCCCCCcccee-eEEeeCCEEEEEEeCCCc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY--------SEDMIPTVGFNM-RKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~--------~~~~~~t~~~~~-~~~~~~~~~~~~~D~~g~ 74 (184)
+.+..+.++|.||+|||||+|.+..... ..+++-|..... ..+. ..-.+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~-~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS-HRPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec-cCCceEEecCCCc
Confidence 3579999999999999999998874221 112222222211 1122 2234788899994
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=97.79 E-value=2e-05 Score=54.35 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++...++-.++++|++|+|||||++.+.
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5667788899999999999999999886
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00019 Score=56.90 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++--++++|++|+||||++..+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHH
Confidence 345689999999999999999883
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.6e-05 Score=53.37 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
+|+|+|++|||||||...+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999983
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.5e-05 Score=52.82 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.5
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...+-.++|+|++|+|||||+|-+.+
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHh
Confidence 35567899999999999999999883
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=4e-05 Score=51.89 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=24.7
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
|+...++-.++|+||+|+|||||+..+.
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va 50 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVA 50 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHH
Confidence 5566777889999999999999999998
|
|
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0003 Score=54.89 Aligned_cols=153 Identities=15% Similarity=0.184 Sum_probs=82.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH----cCCC------------------------------------CCCCCCCcc---
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA----TGGY------------------------------------SEDMIPTVG--- 53 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~----~~~~------------------------------------~~~~~~t~~--- 53 (184)
++++-|+++|-+||||||-+-++. .+.+ ...|.....
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~va 455 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVA 455 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHH
Confidence 477999999999999999988886 1111 001110000
Q ss_pred -ceeeEEeeCCEEEEEEeCCCcccch----HhHHH--hccCCCEEEEEEeCC-CCCChHHHHHHHHHHhcCCCCCCCcEE
Q 029978 54 -FNMRKVTKGNVTIKLWDLGGQPRFR----SMWER--YCRAVSAIVYVVDAA-DYDNLPVSRSELHDLLSKPSLNGIPLL 125 (184)
Q Consensus 54 -~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~~--~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~pii 125 (184)
..+..-....+.+.++||+|..... ..... -....|.+++|-.+- .-++...+...-..+.... .++.---
T Consensus 456 k~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~-~~r~id~ 534 (587)
T KOG0781|consen 456 KEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHS-TPRLIDG 534 (587)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCC-Cccccce
Confidence 0000011245789999999965322 22222 246788899887763 3345666555444444433 2334445
Q ss_pred EEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeee------CCCCCHHHHHHHH
Q 029978 126 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC------KNSTNIDTVIDWL 176 (184)
Q Consensus 126 lv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa------~~~~~v~~l~~~i 176 (184)
++++|+|-.+. .+-....+.... ..|++++-+ +...|++.+...+
T Consensus 535 ~~ltk~dtv~d----~vg~~~~m~y~~--~~pi~fvg~gqtysdlr~l~v~~vv~~l 585 (587)
T KOG0781|consen 535 ILLTKFDTVDD----KVGAAVSMVYIT--GKPILFVGVGQTYSDLRKLNVKAVVATL 585 (587)
T ss_pred EEEEeccchhh----HHHHHhhheeec--CCceEEEecCcchhhhhhccHHHHHHHh
Confidence 67899997653 333334443333 334555433 2344555554443
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.9e-05 Score=53.37 Aligned_cols=21 Identities=24% Similarity=0.629 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
+|+|+|++|+|||||++.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999873
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0005 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
+-.++++|++|+||||++-.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999887775
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.1e-05 Score=51.86 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=23.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEEccCCCccccceeeecc
Confidence 3456677899999999999999998874
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.3e-05 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.+|+|+|+|||||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999843
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=56.29 Aligned_cols=33 Identities=27% Similarity=0.576 Sum_probs=25.7
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+.+..++ ..+-+++++|.+|+|||||++.+.+.
T Consensus 186 ~~L~~~L-----~~g~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 186 DVLAAWL-----SGGKTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred HHHHHHh-----hcCCEEEEECCCCccHHHHHHHHHHh
Confidence 4455554 34568999999999999999999853
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0013 Score=43.20 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
..-.+.++|++|+|||++++.+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999843
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=97.68 E-value=3.2e-05 Score=54.92 Aligned_cols=28 Identities=39% Similarity=0.565 Sum_probs=24.1
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...++ .++|+|++|+|||||++.+.+
T Consensus 20 s~~i~~g-~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 20 SLTLGPG-MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred eEEEcCC-cEEEECCCCCCHHHHHHHHhC
Confidence 3555667 899999999999999999985
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00081 Score=53.83 Aligned_cols=37 Identities=32% Similarity=0.517 Sum_probs=28.2
Q ss_pred HHHHHHHHhhccCC-ceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLFFKQ-EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+..|+.++.... .-.+.+.|++|+||||+++.+.+
T Consensus 24 ~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 24 EQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 45667776654322 45678999999999999999984
|
|
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00012 Score=52.60 Aligned_cols=38 Identities=16% Similarity=0.379 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+.+.++..+......+-|+|-|.+|||||||.+.+..
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45666677665667789999999999999999998873
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.65 E-value=5e-05 Score=47.70 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=22.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+....+-.++++|++|+|||||++.+.
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 444566778999999999999999875
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.5e-05 Score=54.03 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=23.9
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-+++|+|++|+|||||++-+.+
T Consensus 48 f~i~~Ge~vGiiG~NGaGKSTLlkliaG 75 (249)
T COG1134 48 FEIYKGERVGIIGHNGAGKSTLLKLIAG 75 (249)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4456677899999999999999998874
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=4e-05 Score=58.15 Aligned_cols=29 Identities=38% Similarity=0.495 Sum_probs=23.6
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++.+.++=-++++||+||||||+++.+.+
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34455655678999999999999999984
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.63 E-value=4.2e-05 Score=60.40 Aligned_cols=28 Identities=14% Similarity=0.464 Sum_probs=25.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++.++++-||+|+|++||||||+++.++
T Consensus 372 sf~I~kGekVaIvG~nGsGKSTilr~Ll 399 (591)
T KOG0057|consen 372 SFTIPKGEKVAIVGSNGSGKSTILRLLL 399 (591)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 5677889999999999999999999998
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=55.59 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+++..|+++|--|+||||.+-+|.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA 121 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLA 121 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHH
Confidence 456779999999999999988876
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0029 Score=43.65 Aligned_cols=67 Identities=16% Similarity=0.064 Sum_probs=45.8
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
..+.+.++|||+.... .....+..+|.+++++..+. .+.......+..+.. .+.|+.+|+||+|...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRH----FGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCc
Confidence 5678999999965322 23455678999999998874 355555554444332 2567899999999754
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00012 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+..-++|.|++|+|||||++.+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999998873
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.1e-05 Score=53.96 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.++++=.|+|+|++|+|||||++.+.+
T Consensus 25 l~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 25 LEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 4556677799999999999999999974
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00049 Score=57.32 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+--++++|++|+||||.+.++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 44679999999999999999883
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.5e-05 Score=53.13 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=21.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+.+++.--.+++||+|||||||++.+.
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHH
Confidence 344555556999999999999999886
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=97.61 E-value=5e-05 Score=54.20 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=25.0
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 345566778899999999999999999853
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0002 Score=39.30 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=27.8
Q ss_pred HhccCCCEEEEEEeCCCCCChHHH--HHHHHHHhcCCCCCCCcEEEEeeCCC
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVS--RSELHDLLSKPSLNGIPLLVLGNKID 132 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~piilv~nK~D 132 (184)
...+-.++++|++|.+....+.-. ...+.++.... .+.|+++|.||+|
T Consensus 9 AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 9 ALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp GGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred HHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 334567899999999987765332 23344554432 3799999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=1.2e-05 Score=57.34 Aligned_cols=27 Identities=41% Similarity=0.535 Sum_probs=23.3
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...++-.++++||+|+||||++|.+.
T Consensus 25 l~v~~Gei~~LIGPNGAGKTTlfNlit 51 (250)
T COG0411 25 LEVRPGEIVGLIGPNGAGKTTLFNLIT 51 (250)
T ss_pred EEEcCCeEEEEECCCCCCceeeeeeec
Confidence 455667778999999999999999887
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.6e-05 Score=53.77 Aligned_cols=30 Identities=37% Similarity=0.427 Sum_probs=25.3
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 455667778999999999999999999853
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00092 Score=49.26 Aligned_cols=112 Identities=18% Similarity=0.129 Sum_probs=60.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC----CC-----CC------------CCCCCccceeeEE--------------eeC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG----GY-----SE------------DMIPTVGFNMRKV--------------TKG 62 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~----~~-----~~------------~~~~t~~~~~~~~--------------~~~ 62 (184)
+.-+++++|++|+||||++..+... .. .. .+....++..... ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3468999999999999999887621 00 00 0000111111110 112
Q ss_pred CEEEEEEeCCCcccc----hHhHHHhc--cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 63 NVTIKLWDLGGQPRF----RSMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
.+.+.++||+|.... .......+ ...+.+++|+|++.. .+........+.. --+-=++.||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 468899999996532 12222222 234668889998642 1233333333321 1234577899997553
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=7.6e-05 Score=56.89 Aligned_cols=60 Identities=22% Similarity=0.192 Sum_probs=39.4
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCC---CCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
-...++.+.|++||-|++||||+||+|........ ++.|.--.+.+. -.++-++|+||..
T Consensus 301 Lh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvV 363 (572)
T KOG2423|consen 301 LHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVV 363 (572)
T ss_pred hccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCcc
Confidence 34467789999999999999999999986654322 222221111111 1257788999953
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.5e-05 Score=53.81 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=25.3
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455567778999999999999999999853
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.3e-05 Score=43.25 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
|++.|++|+||||+.+.+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999973
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.8e-05 Score=52.87 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.2
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+...|+|.|++|||||||++.+..
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45778999999999999999999874
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=97.59 E-value=5.6e-05 Score=53.88 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 23 NFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344566778999999999999999999853
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.7e-05 Score=52.86 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.8
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+++.-|+|+|++|||||||++.+.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 35678899999999999999999974
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.59 E-value=6e-05 Score=49.94 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=17.9
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 029978 22 LSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~ 40 (184)
|.++|+|||||||+++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999997
|
... |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.58 E-value=7.8e-05 Score=53.85 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=25.1
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 20 DLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345567778999999999999999999853
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.4e-05 Score=52.74 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345566778899999999999999999853
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=7.8e-05 Score=56.28 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
+....+=-++++||+|||||||++.+.+-.
T Consensus 24 l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444555568999999999999999998533
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.57 E-value=8.3e-05 Score=52.57 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=24.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45566778999999999999999999853
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=97.57 E-value=8.8e-05 Score=51.80 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 355567778899999999999999998853
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00016 Score=55.06 Aligned_cols=42 Identities=24% Similarity=0.345 Sum_probs=27.3
Q ss_pred eCCEEEEEEeCCCcccch-HhHH-----HhccCCCEEEEEEeCCCCCC
Q 029978 61 KGNVTIKLWDLGGQPRFR-SMWE-----RYCRAVSAIVYVVDAADYDN 102 (184)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~~ 102 (184)
..++.+.+.||.|...-. .+.. .-.-..|-+|+|.|++-...
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA 228 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence 456899999999954321 1111 12345789999999986543
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=97.56 E-value=6.7e-05 Score=53.33 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=25.1
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++++|++|+|||||++.+.+.
T Consensus 20 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 20 DLTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345567778999999999999999999853
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=4.8e-05 Score=51.77 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=17.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~ 42 (184)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999844
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=97.55 E-value=7e-05 Score=53.15 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=24.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 21 FSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44566777899999999999999999853
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=97.55 E-value=9.7e-05 Score=52.84 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=24.4
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 45566778999999999999999998753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0001 Score=50.92 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.0
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
..+++-.++++|++|+|||||++.+.+-
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 4467778999999999999999998853
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=6.8e-05 Score=54.26 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=23.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++--++|+||+|+|||||+..+++
T Consensus 25 l~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 25 LSVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4455666789999999999999999995
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=9.7e-05 Score=51.84 Aligned_cols=30 Identities=30% Similarity=0.344 Sum_probs=25.2
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345567778999999999999999999854
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=97.55 E-value=6.8e-05 Score=53.31 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=24.4
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 22 ISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44566778899999999999999999853
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=9.6e-05 Score=52.63 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=25.3
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++++|++|+|||||++.+.+-
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345567778999999999999999999854
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=97.54 E-value=7.4e-05 Score=53.43 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 20 SFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345566778899999999999999999853
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=97.54 E-value=9.5e-05 Score=52.25 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345566778999999999999999999853
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.54 E-value=8e-05 Score=50.99 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
+|.|.|++|+|||||+.++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i 20 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVI 20 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999987
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0001 Score=51.90 Aligned_cols=30 Identities=37% Similarity=0.390 Sum_probs=25.3
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+.
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 355567788999999999999999998853
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=97.54 E-value=9.4e-05 Score=52.90 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+.
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345566777899999999999999999854
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.54 E-value=9.4e-05 Score=51.54 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=23.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+.+-.++|+|++|+|||||++.+.+
T Consensus 20 ~~v~~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 20 LAVEARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3345677899999999999999999884
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.54 E-value=7.4e-05 Score=54.23 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 22 NLNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345566778999999999999999999853
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=97.53 E-value=7.9e-05 Score=51.51 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4456677889999999999999999984
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00011 Score=51.67 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=25.2
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+.
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 20 SFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345567778999999999999999999853
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00018 Score=49.40 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=23.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
|+..+++--|.|+|.+|||||||++.+.-
T Consensus 26 SL~A~~GdVisIIGsSGSGKSTfLRCiN~ 54 (256)
T COG4598 26 SLQANAGDVISIIGSSGSGKSTFLRCINF 54 (256)
T ss_pred eeecCCCCEEEEecCCCCchhHHHHHHHh
Confidence 34556677799999999999999998863
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00011 Score=52.61 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=25.0
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+.
T Consensus 25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345566778999999999999999999853
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00011 Score=52.10 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=24.6
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..+.+-.++++|++|+|||||++++.+
T Consensus 23 sl~v~~Geiv~llG~NGaGKTTlLkti~G 51 (237)
T COG0410 23 SLEVERGEIVALLGRNGAGKTTLLKTIMG 51 (237)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34556677789999999999999999984
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=97.53 E-value=8.1e-05 Score=53.99 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=25.6
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+.
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 20 NLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred ceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455677778999999999999999999854
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=97.52 E-value=7.6e-05 Score=53.92 Aligned_cols=29 Identities=38% Similarity=0.464 Sum_probs=24.4
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...++-.++|+|++|+|||||++.+.+
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHcC
Confidence 34556677899999999999999999975
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00012 Score=49.94 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=24.7
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|+|||||++.+.+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45567778999999999999999999854
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=97.52 E-value=8e-05 Score=53.50 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=25.1
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 20 SLDIPKGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345567778999999999999999999854
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00011 Score=52.32 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=25.0
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 19 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 19 SFEVKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 355567778999999999999999998753
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00011 Score=52.45 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=25.0
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344566777999999999999999999853
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00011 Score=53.76 Aligned_cols=30 Identities=33% Similarity=0.432 Sum_probs=25.4
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 355567778999999999999999999854
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 184 | ||||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 4e-71 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 1e-68 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-68 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 2e-28 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 1e-26 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 5e-26 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 1e-25 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 1e-25 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 2e-25 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 2e-25 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 1e-24 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 1e-24 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 1e-24 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 1e-24 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 1e-24 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 6e-24 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 9e-24 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 9e-24 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 1e-23 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 1e-23 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 1e-23 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 6e-23 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 7e-23 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 8e-23 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 8e-23 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 1e-22 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 1e-22 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 1e-22 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 2e-22 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 2e-22 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 4e-22 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 9e-22 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 3e-21 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 3e-21 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 4e-21 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 4e-21 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 9e-21 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 2e-20 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 4e-20 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 2e-19 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 2e-19 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 2e-19 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 2e-19 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 4e-19 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 9e-19 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 2e-18 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 3e-18 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 3e-18 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 3e-18 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 9e-18 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 9e-18 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 9e-17 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 9e-16 | ||
| 1ky2_A | 182 | Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | 2e-12 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 3e-11 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 3e-11 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 3e-11 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 4e-11 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 4e-11 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 4e-11 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 5e-11 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 5e-11 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 5e-11 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 6e-11 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 6e-11 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 7e-11 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 8e-11 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 9e-11 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 3e-10 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 6e-10 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 1e-09 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 2e-09 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 5e-09 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 1e-08 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 2e-08 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 2e-08 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 2e-08 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 2e-08 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 2e-08 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 2e-08 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 3e-08 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 3e-08 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 3e-08 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 3e-08 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 4e-08 | ||
| 1yzl_A | 179 | Gppnhp-Bound Rab9 Gtpase Length = 179 | 4e-08 | ||
| 2bku_A | 177 | Kap95p:rangtp Complex Length = 177 | 5e-08 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 5e-08 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 5e-08 | ||
| 1s8f_A | 177 | Crystal Structure Of Rab9 Complexed To Gdp Reveals | 5e-08 | ||
| 1wms_A | 177 | High Resolution Crystal Structure Of Human Rab9 Gtp | 5e-08 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 6e-08 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 7e-08 | ||
| 1byu_A | 216 | Canine Gdp-Ran Length = 216 | 9e-08 | ||
| 1yzq_A | 170 | Gppnhp-Bound Rab6 Gtpase Length = 170 | 9e-08 | ||
| 1vg0_B | 207 | The Crystal Structures Of The Rep-1 Protein In Comp | 9e-08 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 1e-07 | ||
| 3law_A | 207 | Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2 | 1e-07 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 1e-07 | ||
| 1vg1_A | 185 | Gdp-bound Rab7 Length = 185 | 1e-07 | ||
| 1z0d_A | 167 | Gdp-bound Rab5c Gtpase Length = 167 | 1e-07 | ||
| 2fe4_A | 171 | The Crystal Structure Of Human Neuronal Rab6b In It | 2e-07 | ||
| 2gil_A | 162 | Structure Of The Extremely Slow Gtpase Rab6a In The | 2e-07 | ||
| 2ocb_A | 180 | Crystal Structure Of Human Rab9b In Complex With A | 2e-07 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 2e-07 | ||
| 2y8e_A | 179 | Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo | 2e-07 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 3e-07 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 3e-07 | ||
| 3mjh_A | 168 | Crystal Structure Of Human Rab5a In Complex With Th | 4e-07 | ||
| 3tso_A | 178 | Structure Of The Cancer Associated Rab25 Protein In | 4e-07 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 4e-07 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 4e-07 | ||
| 1wa5_A | 176 | Crystal Structure Of The Exportin Cse1p Complexed W | 4e-07 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 6e-07 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 6e-07 | ||
| 2hxs_A | 178 | Crystal Structure Of Rab28a Gtpase In The Inactive | 6e-07 | ||
| 2oil_A | 193 | Crystal Structure Of Human Rab25 In Complex With Gd | 6e-07 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 7e-07 | ||
| 1rrp_A | 204 | Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = | 8e-07 | ||
| 1qbk_C | 216 | Structure Of The Karyopherin Beta2-ran Gppnhp Nucle | 9e-07 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 1e-06 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 1e-06 | ||
| 1a2k_C | 216 | Gdpran-Ntf2 Complex Length = 216 | 1e-06 | ||
| 3ea5_A | 216 | Kap95p Binding Induces The Switch Loops Of Rangdp T | 1e-06 | ||
| 1t91_A | 207 | Crystal Structure Of Human Small Gtpase Rab7(Gtp) L | 1e-06 | ||
| 3gj0_A | 221 | Crystal Structure Of Human Rangdp Length = 221 | 1e-06 | ||
| 1qg2_A | 216 | Canine Gdp-Ran R76e Mutant Length = 216 | 1e-06 | ||
| 4dkx_A | 216 | Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | 1e-06 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 2e-06 | ||
| 3cwz_A | 188 | Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | 2e-06 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 2e-06 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 2e-06 | ||
| 3icq_B | 171 | Karyopherin Nuclear State Length = 171 | 3e-06 | ||
| 2x19_A | 172 | Crystal Structure Of Importin13 - Rangtp Complex Le | 3e-06 | ||
| 1qg4_A | 216 | Canine Gdp-Ran F72y Mutant Length = 216 | 3e-06 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 3e-06 | ||
| 1z22_A | 168 | Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac | 4e-06 | ||
| 3bbp_A | 211 | Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = | 4e-06 | ||
| 3nby_C | 176 | Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea | 5e-06 | ||
| 3nc1_C | 182 | Crystal Structure Of The Crm1-Rangtp Complex Length | 5e-06 | ||
| 3m1i_A | 219 | Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex | 5e-06 | ||
| 3gj4_A | 221 | Crystal Structure Of Human Rangdp-Nup153znf3 Comple | 5e-06 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 6e-06 | ||
| 3ran_A | 216 | Canine Gdp-Ran Q69l Mutant Length = 216 | 9e-06 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 1e-05 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 1e-05 | ||
| 2efc_B | 181 | Ara7-GdpATVPS9A Length = 181 | 2e-05 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 5e-05 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 5e-05 | ||
| 1zbd_A | 203 | Structural Basis Of Rab Effector Specificity: Cryst | 5e-05 | ||
| 1z0j_A | 170 | Structure Of Gtp-Bound Rab22q64l Gtpase In Complex | 6e-05 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 7e-05 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 7e-05 | ||
| 2lkc_A | 178 | Free B.St If2-G2 Length = 178 | 1e-04 | ||
| 3clv_A | 208 | Crystal Structure Of Rab5a From Plasmodium Falcipar | 1e-04 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 1e-04 | ||
| 2f9l_A | 199 | 3d Structure Of Inactive Human Rab11b Gtpase Length | 1e-04 | ||
| 1z0f_A | 179 | Gdp-Bound Rab14 Gtpase Length = 179 | 2e-04 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 2e-04 | ||
| 4drz_A | 196 | Crystal Structure Of Human Rab14 Length = 196 | 3e-04 | ||
| 2a5j_A | 191 | Crystal Structure Of Human Rab2b Length = 191 | 3e-04 | ||
| 2j1l_A | 214 | Crystal Structure Of Human Rho-Related Gtp-Binding | 3e-04 | ||
| 3oes_A | 201 | Crystal Structure Of The Small Gtpase Rhebl1 Length | 4e-04 | ||
| 2ke5_A | 174 | Solution Structure And Dynamics Of The Small Gtpase | 4e-04 | ||
| 2kwi_A | 178 | Ralb-Rlip76 (Ralbp1) Complex Length = 178 | 4e-04 | ||
| 2erx_A | 172 | Crystal Structure Of Diras2 In Complex With Gdp And | 4e-04 | ||
| 2if0_A | 200 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 4e-04 | ||
| 1z0k_A | 172 | Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W | 4e-04 | ||
| 3ihw_A | 184 | Crystal Structure Of The Ras-Like Domain Of Centg3 | 4e-04 | ||
| 2hv8_A | 172 | Crystal Structure Of Gtp-Bound Rab11 In Complex Wit | 5e-04 | ||
| 2iez_A | 220 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 5e-04 | ||
| 3cpj_B | 223 | Crystal Structure Of Ypt31 In Complex With Yeast Ra | 6e-04 | ||
| 2iey_A | 195 | Crystal Structure Of Mouse Rab27b Bound To Gdp In H | 7e-04 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 7e-04 | ||
| 3dpu_A | 535 | Roccor Domain Tandem Of Rab Family Protein (Roco) L | 7e-04 | ||
| 1oiw_A | 191 | X-ray Structure Of The Small G Protein Rab11a In Co | 8e-04 | ||
| 2cls_A | 198 | The Crystal Structure Of The Human Rnd1 Gtpase In T | 8e-04 |
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177 | Back alignment and structure |
|
| >pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216 | Back alignment and structure |
|
| >pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185 | Back alignment and structure |
|
| >pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167 | Back alignment and structure |
|
| >pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171 | Back alignment and structure |
|
| >pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162 | Back alignment and structure |
|
| >pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168 | Back alignment and structure |
|
| >pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178 | Back alignment and structure |
|
| >pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204 | Back alignment and structure |
|
| >pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216 | Back alignment and structure |
|
| >pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216 | Back alignment and structure |
|
| >pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207 | Back alignment and structure |
|
| >pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221 | Back alignment and structure |
|
| >pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216 | Back alignment and structure |
|
| >pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171 | Back alignment and structure |
|
| >pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172 | Back alignment and structure |
|
| >pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168 | Back alignment and structure |
|
| >pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211 | Back alignment and structure |
|
| >pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176 | Back alignment and structure |
|
| >pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182 | Back alignment and structure |
|
| >pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219 | Back alignment and structure |
|
| >pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203 | Back alignment and structure |
|
| >pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|2LKC|A Chain A, Free B.St If2-G2 Length = 178 | Back alignment and structure |
|
| >pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199 | Back alignment and structure |
|
| >pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196 | Back alignment and structure |
|
| >pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191 | Back alignment and structure |
|
| >pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214 | Back alignment and structure |
|
| >pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201 | Back alignment and structure |
|
| >pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174 | Back alignment and structure |
|
| >pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178 | Back alignment and structure |
|
| >pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172 | Back alignment and structure |
|
| >pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200 | Back alignment and structure |
|
| >pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172 | Back alignment and structure |
|
| >pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184 | Back alignment and structure |
|
| >pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172 | Back alignment and structure |
|
| >pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220 | Back alignment and structure |
|
| >pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223 | Back alignment and structure |
|
| >pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco) Length = 535 | Back alignment and structure |
|
| >pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191 | Back alignment and structure |
|
| >pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 7e-84
Identities = 117/186 (62%), Positives = 146/186 (78%), Gaps = 3/186 (1%)
Query: 1 MGLWEAFLN---WLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR 57
MG + L K+EMEL+L+GLQ +GKT+ VNVIA+G ++EDMIPTVGFNMR
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR 60
Query: 58 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP 117
K+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S++ELH+LL KP
Sbjct: 61 KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP 120
Query: 118 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177
L GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK NID + WL+
Sbjct: 121 QLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180
Query: 178 KHSKSK 183
+HSKS+
Sbjct: 181 QHSKSR 186
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 1e-76
Identities = 64/185 (34%), Positives = 101/185 (54%), Gaps = 2/185 (1%)
Query: 1 MGLWEAFL-NWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV 59
MG W A L L L +++ + ++GL NAGKTS++ + G +PTVG N+ +
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETL 61
Query: 60 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL 119
N++ ++WDLGGQ R W Y A++YVVD+ D D + V++ EL+ LL + L
Sbjct: 62 QYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDEL 121
Query: 120 NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
LL+ NK D P+A S+ ++ EQ+G+ SI +R S K + +DWLV+
Sbjct: 122 RKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVER 181
Query: 180 SKSKS 184
+ +
Sbjct: 182 LREQG 186
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 1e-75
Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 1/170 (0%)
Query: 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73
+EM + ++GL AGKT+++ + G IPT+GFN+ VT N+ ++WDLGG
Sbjct: 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGG 60
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133
R W Y A++YVVD+ D D + +S+SEL +L + L L+V NK D
Sbjct: 61 LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 120
Query: 134 PEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+A++ ++ +GL ++ DR+ + S T +D ++WLV+ KS+
Sbjct: 121 EQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 4e-71
Identities = 49/188 (26%), Positives = 101/188 (53%), Gaps = 5/188 (2%)
Query: 1 MGLWEAFLNWLRSLFF--KQEMELSLIGLQNAGKTSLVNVIATGG-YSEDMIPTVGFNMR 57
MG + L +E+ + +GL N+GKT+++N + S++++PT+GF++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE 60
Query: 58 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP 117
K +++ ++D+ GQ R+R++WE Y + AI++V+D++D + V++ EL LL+ P
Sbjct: 61 KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP 120
Query: 118 SLNG--IPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175
+ IP+L NK+D +A++ + + + L++I D+ + +DW
Sbjct: 121 DIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDW 180
Query: 176 LVKHSKSK 183
L ++
Sbjct: 181 LQDQIQTV 188
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 5e-71
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 1 MGLWEAFLNWLRSL-----FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN 55
M W+ F W R + + + +L +GL NAGKT+L++++ + + PT
Sbjct: 1 MAGWDIF-GWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT 58
Query: 56 MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS 115
++ GN+ +DLGG + R +W+ Y V+ IV++VDAAD + +R EL L +
Sbjct: 59 SEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFN 118
Query: 116 KPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT-------DREVCCYMISCKNSTN 168
L +P ++LGNKID P A+S+ +L +GL + T R V +M S
Sbjct: 119 IAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178
Query: 169 IDTVIDWLVKH 179
WL ++
Sbjct: 179 YLEAFQWLSQY 189
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 5e-68
Identities = 57/184 (30%), Positives = 94/184 (51%), Gaps = 4/184 (2%)
Query: 1 MGLWEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV 59
MG F + L+ +E+ + ++GL AGKT+++ + G PT+GFN+ +
Sbjct: 1 MGNI--FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQ-IGEVVTTKPTIGFNVETL 57
Query: 60 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL 119
+ N+ + +WDLGGQ R W Y +A+++VVD+ D D + + ELH +L + L
Sbjct: 58 SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEEL 117
Query: 120 NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
LLV NK D+P ALS ++ +++ L + DR S I +DWL+
Sbjct: 118 QDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDV 177
Query: 180 SKSK 183
K +
Sbjct: 178 IKEE 181
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 204 bits (520), Expect = 9e-68
Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 6/184 (3%)
Query: 1 MGLWEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV 59
MGL L L+ + ++E+ L ++GL NAGKT+++ G + + PT+GFN++ +
Sbjct: 3 MGL----LTILKKMKQKERELRLLMLGLDNAGKTTILKKFN-GEDVDTISPTLGFNIKTL 57
Query: 60 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL 119
+ +WD+GGQ RS W Y + +++VVD+AD + + EL LL + L
Sbjct: 58 EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL 117
Query: 120 NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
G LL+ NK D P ALS + E + L SI S ++ IDWL+
Sbjct: 118 AGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 177
Query: 180 SKSK 183
S+
Sbjct: 178 ISSR 181
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 202 bits (517), Expect = 2e-67
Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 3/179 (1%)
Query: 7 FLNWLRSLFF--KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNV 64
L+ LR L QE+ + L+GL NAGKT+L+ +A + PT GFN++ V
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLA-SEDISHITPTQGFNIKSVQSQGF 60
Query: 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 124
+ +WD+GGQ + R W Y ++YV+D+AD + EL +LL + L+ +P+
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120
Query: 125 LVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
L+ NK D A ++ E + L +I DR S + ++W+ K+ +K
Sbjct: 121 LIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 4e-67
Identities = 58/190 (30%), Positives = 104/190 (54%), Gaps = 14/190 (7%)
Query: 3 LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK 61
++ F + L+ L +K+ +L +GL NAGKT+L++++ + +PT+ ++T
Sbjct: 8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTI 66
Query: 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNG 121
+T +DLGG + R +W+ Y A++ IV++VD AD++ L S+ EL L++ ++
Sbjct: 67 AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIAN 126
Query: 122 IPLLVLGNKIDKPEALSKEDLMEQMG------------LKSITDREVCCYMISCKNSTNI 169
+P+L+LGNKID+PEA+S+E L E G LK + R + +M S
Sbjct: 127 VPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGY 186
Query: 170 DTVIDWLVKH 179
W+ ++
Sbjct: 187 GEGFRWMAQY 196
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 3e-66
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 1/175 (0%)
Query: 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKL 68
+ +F K++M + ++GL AGKT+++ + G IPT+GFN+ V N+ +
Sbjct: 19 SLFSRIFGKKQMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNICFTV 77
Query: 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
WD+GGQ + R +W Y + +++VVD+ D + + S EL +L + L LLV
Sbjct: 78 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFA 137
Query: 129 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
NK D P A+ +L +++GL+ + R T + +DWL +
Sbjct: 138 NKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 194 bits (496), Expect = 3e-64
Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 4/183 (2%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
MG+ + LF QE ++ ++GL NAGKT+++ + PT+G N+ ++
Sbjct: 1 MGIL---FTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFS-MNEVVHTSPTIGSNVEEIV 56
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
N +WD+GGQ RS W Y ++ VVD+ D + + V+R EL+ +L+ L
Sbjct: 57 INNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR 116
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
LL+ NK D E ++ ++ + + L SI D + + ++W++
Sbjct: 117 KAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176
Query: 181 KSK 183
K +
Sbjct: 177 KIR 179
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 1e-62
Identities = 48/164 (29%), Positives = 88/164 (53%), Gaps = 1/164 (0%)
Query: 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
M + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
+W Y + +++VVD+ D + + +R EL +L++ L LLV NK D P A++
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 119
Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
++ +++GL S+ R + + +DWL +++
Sbjct: 120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 1e-59
Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 3/181 (1%)
Query: 1 MGLWEAFLNWLRSLFF--KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK 58
MG + L QE ++ ++GL NAGKT+++ + PT+G N+ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFS-MNEVVHTSPTIGSNVEE 59
Query: 59 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS 118
+ N +WD+GGQ RS W Y ++ VVD+ D + + V+R EL+ +L+
Sbjct: 60 IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED 119
Query: 119 LNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
L LL+ NK D E ++ ++ + + L SI D + + ++W++
Sbjct: 120 LRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179
Query: 179 H 179
Sbjct: 180 R 180
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 2e-45
Identities = 53/177 (29%), Positives = 94/177 (53%), Gaps = 1/177 (0%)
Query: 7 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTI 66
R LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V N++
Sbjct: 153 TPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISF 211
Query: 67 KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 126
+WD+GGQ + R +W Y + +++VVD+ D + + +R EL +L++ L LLV
Sbjct: 212 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 271
Query: 127 LGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
NK D P A++ ++ +++GL S+ R + + +DWL +++
Sbjct: 272 FANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 6e-37
Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 10/173 (5%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGG 73
+ + +GL ++GKT L + TG Y + ++ + N ++ L DL G
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIYKVNNNRGNSLTLIDLPG 63
Query: 74 QPRFR-SMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSL--NGIPLLVLGN 129
R + +R+ + A+V+VVD+A + + L+ +L N LL+ N
Sbjct: 64 HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123
Query: 130 KIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182
K D A S + + +Q+ + T R + + T L K K
Sbjct: 124 KQDIAMAKSAKLIQQQLEKELNTLRVT--RSAAPSTLDSSSTAPAQLGKKGKE 174
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 2e-36
Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 15/178 (8%)
Query: 12 RSLFFKQ---EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKL 68
+ KQ + + + G QN+GKTSL+ ++ T + + + + L
Sbjct: 2 SHMGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-PLSAADYDGSGVTL 59
Query: 69 WDLGGQPRFRSMWERY----CRAVSAIVYVVDAA-DYDNLPVSRSELHDLLSKPSL---N 120
D G + R Y + V ++++VD+ D L + L D+LS N
Sbjct: 60 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN 119
Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMG--LKSITDREVCCYMISCKNSTNIDTVIDWL 176
GI +L+ NK + A + + + ++ + +R + D + L
Sbjct: 120 GIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTL 177
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 5e-36
Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 10/150 (6%)
Query: 7 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTI 66
L + + + G QN+GKTSL+ ++ T + + + +
Sbjct: 36 KLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQE-PLSAADYDGSGV 93
Query: 67 KLWDLGGQPRFRSMWERY----CRAVSAIVYVVDAA-DYDNLPVSRSELHDLLSKPSL-- 119
L D G + R Y + V ++++VD+ D L + L D+LS
Sbjct: 94 TLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC 153
Query: 120 -NGIPLLVLGNKIDKPEALSKEDLMEQMGL 148
NGI +L+ NK + A + + +
Sbjct: 154 ENGIDILIACNKSELFTARPPSKIKDALES 183
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 8e-36
Identities = 30/191 (15%), Positives = 70/191 (36%), Gaps = 27/191 (14%)
Query: 15 FFKQEMELSLI--GLQNAGKTSLVNVIATGGYSEDM----------IPTVGFNM-----R 57
F +E+ ++ G +GKT+ + I + T+ F+
Sbjct: 8 FANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG 67
Query: 58 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS-- 115
+V L+ + GQ + + + R V IV+V D+A + L + + ++
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMRENL 126
Query: 116 ---KPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
+L+ +P+++ NK D P+AL E + + + + +
Sbjct: 127 AEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP----EGKFPVLEAVATEGKGVFET 182
Query: 173 IDWLVKHSKSK 183
+ + + ++
Sbjct: 183 LKEVSRLVLAR 193
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 3e-27
Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 15/173 (8%)
Query: 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSED---MIPTVGFNMRKVT-KGNVT 65
F + + L+GL+ +GK+S+ V+ + + T ++ V
Sbjct: 11 RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVN 70
Query: 66 IKLWDLGGQPRFRSMW---ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 122
++WD GQ F E R A++YV+DA D ++R + + +
Sbjct: 71 FQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDM 130
Query: 123 PLLVLGNKIDKPEALSKEDLM--------EQMGLKSITDREVCCYMISCKNST 167
V +K+D K + + + + + Y+ S + +
Sbjct: 131 NFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHS 183
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 88.9 bits (220), Expect = 8e-22
Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 18/166 (10%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSED---MIPTVGFNMRKVT-KGNVTIKLWDLGGQPRF-- 77
L+G +GK+S+ ++I + + D + T+ + GN+T+ LWD GGQ F
Sbjct: 8 LMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67
Query: 78 ---RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN--GIPLLVLGNKID 132
+ + V +++V D + L L + + VL +K+D
Sbjct: 68 NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVLLHKMD 126
Query: 133 KPEALSKEDLMEQM------GLKSITDREVCCYMISCKNSTNIDTV 172
+ +E+L + M + + S + +
Sbjct: 127 LVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAW 172
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 2e-20
Identities = 41/174 (23%), Positives = 67/174 (38%), Gaps = 29/174 (16%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK L L+G GKT+ V TG + + + T+G + IK WD
Sbjct: 16 FK----LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 71
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
GQ +F + + Y + + D Y N+P +L + IP+++ G
Sbjct: 72 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-----CENIPIVLCG 126
Query: 129 NKIDKPEALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
NK+D + K + L+ Y IS K++ N + WL +
Sbjct: 127 NKVDIKDRKVKAKSIVFHRKKNLQ---------YYDISAKSNYNFEKPFLWLAR 171
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 3e-20
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
K L L+G GK+S+V + ++E+ PT+G F ++VT T+K WD
Sbjct: 4 IK----LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDT 59
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
GQ RF S+ Y R A + V D + +R + +L + S I + ++GNKI
Sbjct: 60 AGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKI 118
Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
D + + + + G K ++ + + S K N++ V
Sbjct: 119 DXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 2e-19
Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 31/177 (17%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG---FNMRKVTKGNVTIKL--WD 70
+K + LIG GKT+ +N + G + ++ TVG + + IK WD
Sbjct: 12 YK----ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWD 67
Query: 71 LGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 127
GQ + + + Y A AI + V NL E ++ N P++V
Sbjct: 68 TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG----NEAPIVVC 123
Query: 128 GNKIDKPE--ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
NKID +SK+ +++ + Y IS K + N L +
Sbjct: 124 ANKIDIKNRQKISKKLVMEVLKGKNYE---------YFEISAKTAHNFGLPFLHLAR 171
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-19
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 22/162 (13%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVT-KGNVTIKL--WDLGGQPRFR 78
++G +GKTSL A + + T+G F +R++T GN+ + L WD+GGQ
Sbjct: 11 VLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG 70
Query: 79 SMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
M ++Y A + VY + + ++NL + + + + + LV GNKID
Sbjct: 71 KMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV-GNKIDLEH 129
Query: 136 --ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
+ E ++ G S V S K ++
Sbjct: 130 MRTIKPEKHLRFCQENGFSSH---FV-----SAKTGDSVFLC 163
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 9e-19
Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 12/168 (7%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
++G GKTSL+N +S T+G F ++V + + + WD GQ RF+S
Sbjct: 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS 72
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
+ + R A + V+ V + L R E S P +VLGNKID
Sbjct: 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID---- 128
Query: 137 LSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVKHSKSK 183
L + + + Y S K + N++ + +++ +
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 3e-18
Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 21/174 (12%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVT-KGNVTIKL--WDLGGQPRFR 78
++G GKTSL++ YS+ T+G F ++VT G+ + WD GQ RF+
Sbjct: 13 ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ 72
Query: 79 SMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
S+ + R A + VY V +A+ ++N+ R E + S P ++LGNKID E
Sbjct: 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132
Query: 136 ---ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+S++ L + +G ++ ++ S KN+ N+DT + + + + +
Sbjct: 133 SKKIVSEKSAQELAKSLG-------DIPLFLTSAKNAINVDTAFEEIARSALQQ 179
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 3e-18
Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 14/169 (8%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
L+G GK+SL+N T + + T+G F + + + + WD GQ RFRS
Sbjct: 12 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 71
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ + R + + + V D+ + NL + E P ++LGNKID E
Sbjct: 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER 131
Query: 136 ALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVKHSKSK 183
+S E+ D Y S K++TN+ + V+ +
Sbjct: 132 QVSTEE-----AQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-17
Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 22/166 (13%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+SL+ + ++ T+G F ++ ++ KL WD GQ RFR+
Sbjct: 20 IIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT 79
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R A I VY V + L +EL ++ N I +++GNKIDK
Sbjct: 80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTR---NDIVNMLVGNKIDKENR 136
Query: 136 ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+ + + + + I E S K + + LV+
Sbjct: 137 EVDRNEGLKFARKHSMLFI---EA-----SAKTCDGVQCAFEELVE 174
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 2e-17
Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 20/178 (11%)
Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT------------KGNVT 65
QE+++ LIG AGKTSL+ + + T G N+
Sbjct: 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL 99
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 125
WD GGQ + + + S + ++D+ N + P++
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKY-----GGKSPVI 154
Query: 126 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
V+ NKID+ ++ ++ + E + ISCKN ++++ L
Sbjct: 155 VVMNKIDENP---SYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 2e-17
Identities = 31/160 (19%), Positives = 65/160 (40%), Gaps = 19/160 (11%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
L+G++ GK+S+ V+ D + T ++ + + + +L GQ +
Sbjct: 4 LMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEP 62
Query: 81 W---ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN--GIPLLVLGNKIDKPE 135
ER ++V A+VYV+D+ D ++ L ++ I + VL +K+D
Sbjct: 63 SYDSERLFKSVGALVYVIDSQDEYINAITN--LAMIIEYAYKVNPSINIEVLIHKVDGLS 120
Query: 136 ALSKEDLMEQMGLKSITD--------REVCCYMISCKNST 167
K D + ++ + +V Y+ S + +
Sbjct: 121 EDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHS 160
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 6e-17
Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 25/172 (14%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
++G GK+S++ G +++D T+G F R++ + ++L WD GQ F +
Sbjct: 10 VVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA 69
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ + Y R A + + V+ D ++ + R ++ + IP ++ NKID +
Sbjct: 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLLDD 124
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+ E+ L +++ L+ S K N+ V +L + K
Sbjct: 125 SCIKNEEAEGLAKRLKLRFY---RT-----SVKEDLNVSEVFKYLAEKHLQK 168
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 9e-17
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK + LIG GK++L++ ++ + T+G F R + TIK WD
Sbjct: 30 FK----VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 72 GGQPRFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
G R+R++ Y R AV A+ VY + Y+N+ EL D I ++++G
Sbjct: 86 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVG 141
Query: 129 NKIDKPE--ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
NK D A+ ++ E+ GL I E S +STN++
Sbjct: 142 NKSDLRHLRAVPTDEARAFAEKNGLSFI---ET-----SALDSTNVEAA 182
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 1e-16
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 23/171 (13%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GK+ L+ ++ I T+G F ++ V +KL WD GQ RFR+
Sbjct: 8 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT 67
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R A+ I VY + D + N+ +++ + LL++GNK D
Sbjct: 68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDMETR 123
Query: 136 ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
++ + L +++G+ I E S KN N++ + L K + K
Sbjct: 124 VVTADQGEALAKELGIPFI---ES-----SAKNDDNVNEIFFTLAKLIQEK 166
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 2e-16
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK + LIG GK++L++ ++ + T+G F R + TIK WD
Sbjct: 6 FK----VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 72 GGQPRFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
GQ R+R + Y R AV A+ VY + Y+N+ EL D I ++++G
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVG 117
Query: 129 NKIDKPE--ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
NK D A+ ++ E+ L I E S +STN++ ++
Sbjct: 118 NKSDLRHLRAVPTDEARAFAEKNNLSFI---ET-----SALDSTNVEEAFKNILT 164
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 2e-16
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 30/181 (16%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK + LIG GK++L++ ++ D T+G F R + IK WD
Sbjct: 14 FK----IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDT 69
Query: 72 GGQPRFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
GQ R+R++ Y R AV A+ VY + ++ Y+N SEL + + + ++G
Sbjct: 70 AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD----NVAVGLIG 125
Query: 129 NKIDKPE--ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVKHSKS 182
NK D A+ E+ ++ L + S NS N+D + L+
Sbjct: 126 NKSDLAHLRAVPTEESKTFAQENQLL---------FTETSALNSENVDKAFEELINTIYQ 176
Query: 183 K 183
K
Sbjct: 177 K 177
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 3e-16
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK + L+G GKTSLV +++ I T+G F +K+ G + L WD
Sbjct: 7 FK----VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62
Query: 72 GGQPRFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
GQ RF ++ Y R + AI VY + D + + EL +L N I L ++G
Sbjct: 63 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVG 118
Query: 129 NKIDKPE--ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
NKID + +S ++ E +G K S K + I+ +
Sbjct: 119 NKIDLEKERHVSIQEAESYAESVGAKHY---HT-----SAKQNKGIEEL 159
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 3e-16
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 24/167 (14%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG + GKTS + A ++ + TVG F ++ V + +KL WD GQ R+R+
Sbjct: 28 IIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRT 87
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R A+ I +Y + + ++ + +++ ++++GNK D E
Sbjct: 88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD----NAQVILVGNKCDMEEE 143
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+ E L EQ+G E S K + ++ + LV
Sbjct: 144 RVVPTEKGQLLAEQLGFDFF---EA-----SAKENISVRQAFERLVD 182
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 3e-16
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK + LIG GKT+L++ +S D T+G F+ R V G +K WD
Sbjct: 26 FK----VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 81
Query: 72 GGQPRFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
G R+R++ Y R AV A+ V+ + Y + EL+D I ++++G
Sbjct: 82 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA----TIVVMLVG 137
Query: 129 NKIDKPE--ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
NK D + + E+ E GL + E S +STN++
Sbjct: 138 NKSDLSQAREVPTEEARMFAENNGLLFL---ET-----SALDSTNVELA 178
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 4e-16
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 24/172 (13%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GKT ++ + ++ I T+G F +R + IKL WD GQ RFR+
Sbjct: 13 LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 72
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R A+ + VY + + +DN+ + + S + ++LGNK D +
Sbjct: 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKCDVNDK 128
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+SKE L G+K + E S K + N++ L + K+K
Sbjct: 129 RQVSKERGEKLALDYGIKFM---ET-----SAKANINVENAFFTLARDIKAK 172
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 4e-16
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 28/169 (16%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK L +G Q+ GKTSL+ + T+G F + + + T++L WD
Sbjct: 17 FK----LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 72
Query: 72 GGQPRFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
G RFRS+ Y R + A+ VY + + + ++ + + ++++G
Sbjct: 73 AGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG----SDVIIMLVG 128
Query: 129 NKIDKPE--ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
NK D + +S E+ +++ + I E S K N+ +
Sbjct: 129 NKTDLADKRQVSIEEGERKAKELNVMFI---ET-----SAKAGYNVKQL 169
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 4e-16
Identities = 30/175 (17%), Positives = 65/175 (37%), Gaps = 29/175 (16%)
Query: 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDM--IPTVG--FNMRKVT---KGNVTIKL--W 69
M+L ++G +GKT+L+ + S+ TVG + K + L W
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 70 DLGGQPRFRSMWERYCRAVSAIVYVVDAAD----YDNLPVSRSELHDLLSKPSLNGIPLL 125
D G+ F S + + + V D + D + + S P++
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASS-----SPVI 116
Query: 126 VLGNKIDKPE--------ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
++G +D + + ++L+ + G +I D ++ + + S + +
Sbjct: 117 LVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRD---YHFVNATEESDALAKL 168
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 5e-16
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 24/167 (14%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG + GKTS + A ++ + TVG F ++ V + + IKL WD GQ R+R+
Sbjct: 27 LIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT 86
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R A+ + +Y + + + + +++ ++++GNK D +
Sbjct: 87 ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD----NAQVILVGNKCDLEDE 142
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+ ED L + +G + E S K + N+ V + LV
Sbjct: 143 RVVPAEDGRRLADDLGFEFF---EA-----SAKENINVKQVFERLVD 181
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 7e-16
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 24/172 (13%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ RFR+
Sbjct: 38 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 97
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R A I VY V D ++N+ E+ S+ + L++GNK D
Sbjct: 98 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLTTK 153
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+ + +G+ + E S KN+TN++ + K +
Sbjct: 154 KVVDYTTAKEFADSLGIPFL---ET-----SAKNATNVEQSFMTMAAEIKKR 197
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 7e-16
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 24/161 (14%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+ L++ + D T+G F R + IKL WD GQ RFR+
Sbjct: 20 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 79
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R A A+ VY + + Y++L ++ +L + ++++GNK D
Sbjct: 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKADLEAQ 135
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
++ E+ E+ GL + E S K N++
Sbjct: 136 RDVTYEEAKQFAEENGLLFL---EA-----SAKTGENVEDA 168
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 7e-16
Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 28/169 (16%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK L +G Q+ GKTSL+ + T+G F + + + T++L WD
Sbjct: 15 FK----LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 70
Query: 72 GGQPRFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
GQ RFRS+ Y R + A+ VY + + + ++ + + ++++G
Sbjct: 71 AGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG----SDVIIMLVG 126
Query: 129 NKIDKPE--ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
NK D + +S E+ +++ + I E S K N+ +
Sbjct: 127 NKTDLSDKRQVSTEEGERKAKELNVMFI---ET-----SAKAGYNVKQL 167
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 8e-16
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 28/169 (16%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
K + L+G GK+S++ + ++ PT+G F + V N K WD
Sbjct: 7 LK----VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 62
Query: 72 GGQPRFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
G RFR++ Y R + +AI VY + + L EL I + + G
Sbjct: 63 AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP----PSIVVAIAG 118
Query: 129 NKIDKPE--ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
NK D + + + D + + + E S KN+ NI+ +
Sbjct: 119 NKCDLTDVREVMERDAKDYADSIHAIFV---ET-----SAKNAININEL 159
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 8e-16
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 16/172 (9%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
L G GK+S + + + E++ T+G F M+ + L WD GQ RFRS
Sbjct: 33 LAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRS 92
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
+ + Y R A + +Y V + N+ + D + +P++++GNK D +
Sbjct: 93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKADIRDT 148
Query: 137 LSKEDLME---QMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVKHSKSKS 184
+ E G + + + S K+ +NI + L + K ++
Sbjct: 149 AATEGQKCVPGHFG-EKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 8e-16
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 29/181 (16%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK L L+G + GKT +V TG +SE T+G F M+ + +KL WD
Sbjct: 30 FK----LVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 85
Query: 72 GGQPRFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
GQ RFR++ + Y R A AI Y + + + ++P ++ I L++G
Sbjct: 86 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS----NIVQLLIG 141
Query: 129 NKIDKPE--ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVKHSKS 182
NK D E +S + L E + + S K+S+N++ +
Sbjct: 142 NKSDLSELREVSLAEAQSLAEHYDILC--------AIETSAKDSSNVEEAFLRVATELIM 193
Query: 183 K 183
+
Sbjct: 194 R 194
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 9e-16
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELH---DLLSKPSLNGIPLL 125
G + ++ C V +YV +A + H +G PLL
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 166
Query: 126 VLG-NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC--KNSTNIDTVIDWLVKHSKS 182
VL + + L ++ L + + + + T I+W+++ +S
Sbjct: 167 VLSCISQGDVKRMPCFYLAHELHLNLL-NHP--WLVQDTEAETLTGFLNGIEWILEEVES 223
Query: 183 KS 184
K
Sbjct: 224 KR 225
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 9e-16
Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 24/167 (14%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG + GKTS + A ++ + TVG F ++ + + + IKL WD G R+R+
Sbjct: 13 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRT 72
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R A+ I +Y + + ++ + +++ +L++GNK D +
Sbjct: 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKCDMEDE 128
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+S E L + +G + E S K++ N+ + LV
Sbjct: 129 RVVSSERGRQLADHLGFEFF---EA-----SAKDNINVKQTFERLVD 167
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-15
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 23/166 (13%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GK+ L+ ++ I T+G F ++ V +KL WD GQ RFR+
Sbjct: 25 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT 84
Query: 80 MWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R I+ V D D + N+ +++ + LL++GNK D
Sbjct: 85 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDMETR 140
Query: 136 ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
++ + L +++G+ I E S KN N++ + L K
Sbjct: 141 VVTADQGEALAKELGIPFI---ES-----SAKNDDNVNEIFFTLAK 178
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 1e-15
Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 28/169 (16%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK L L+G GK+SLV G + E T+G F + V + T+K WD
Sbjct: 7 FK----LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 62
Query: 72 GGQPRFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
GQ R+ S+ Y R A +AI VY + + + EL S I + + G
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS----PNIVIALSG 118
Query: 129 NKIDKPE--ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
NK D A+ ++ + L + E S K S N++ +
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFM---ET-----SAKTSMNVNEI 159
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-15
Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 24/161 (14%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GKT LV G + T+G F ++ V +KL WD GQ RFRS
Sbjct: 31 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS 90
Query: 80 MWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ + Y R+ +A++ D + LP E+ S + +++GNKID E
Sbjct: 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKIDLAER 146
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
+S++ E + + E S K S N++ +
Sbjct: 147 REVSQQRAEEFSEAQDMYYL---ET-----SAKESDNVEKL 179
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-15
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 28/169 (16%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
K + L+G GK+S+V + ++ PT+G F + V GN K WD
Sbjct: 24 LK----VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDT 79
Query: 72 GGQPRFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
GQ RF S+ Y R + +A+ VY + + L EL + I + + G
Sbjct: 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP----ENIVMAIAG 135
Query: 129 NKIDKPE--ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
NK D + + +D E +G + E S KN+ NI+ +
Sbjct: 136 NKCDLSDIREVPLKDAKEYAESIGAIVV---ET-----SAKNAINIEEL 176
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-15
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 24/161 (14%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+ L++ + +D T+G F R V G T+KL WD GQ RFRS
Sbjct: 30 VIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS 89
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R A A+ VY + Y++L ++ L S I +++ GNK D
Sbjct: 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKKDLDPE 145
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
++ + ++ L + E S N++
Sbjct: 146 REVTFLEASRFAQENELMFL---ET-----SALTGENVEEA 178
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 3e-15
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 24/172 (13%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ RFR+
Sbjct: 21 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 80
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R A I VY V D ++N+ E+ S+ + L++GNK D
Sbjct: 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLTTK 136
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+ + +G+ + E S KN+TN++ + K +
Sbjct: 137 KVVDYTTAKEFADSLGIPFL---ET-----SAKNATNVEQSFMTMAAEIKKR 180
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 3e-15
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL- 68
+S+ K L L+G AGK+SLV + E T+G F + + + T+K
Sbjct: 9 KSINAK----LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFE 64
Query: 69 -WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPL 124
WD GQ R+ S+ Y R A +AI V+ V + A ++ EL + + +
Sbjct: 65 IWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN----PNMVM 120
Query: 125 LVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
+ GNK D + ++ ED ++ GL + E S K +TN+ +
Sbjct: 121 ALAGNKSDLLDARKVTAEDAQTYAQENGLFFM---ET-----SAKTATNVKEI 165
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 4e-15
Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 24/161 (14%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+ L+ + T+G F R V IKL WD GQ FRS
Sbjct: 26 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS 85
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R A A+ VY + +++L + S + ++++GNK D
Sbjct: 86 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKSDLESR 141
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
+ +E+ + GL + E S K + N++
Sbjct: 142 RDVKREEGEAFAREHGLIFM---ET-----SAKTACNVEEA 174
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 4e-15
Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+ L++ + +D T+G F + + G +KL WD GQ RFRS
Sbjct: 15 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 74
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R A A+ VY + Y+ L ++ L S+ I +++ GNK D
Sbjct: 75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKKDLDAD 130
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
++ + ++ L + E S N++ + +K
Sbjct: 131 REVTFLEASRFAQENELMFL---ET-----SALTGENVEEAFVQCARKILNK 174
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 5e-15
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 25/167 (14%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+SL+ A +S I T+G F +R V +KL WD GQ RFR+
Sbjct: 14 IIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT 73
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R I VY V A + N+ E++ + + + +++GNK D PE
Sbjct: 74 ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-----NCDDVCRILVGNKNDDPER 128
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+ ED QMG++ E S K + N++ + + + +
Sbjct: 129 KVVETEDAYKFAGQMGIQLF---ET-----SAKENVNVEEMFNCITE 167
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 6e-15
Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 19/170 (11%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG + GKTSL+ + E TVG F ++ V I+L WD GQ RF S
Sbjct: 31 IIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS 90
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R A I VY + +D+LP + S+ LL++GNK+D
Sbjct: 91 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNKLDCETD 146
Query: 136 -ALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVKHSKSK 183
++++ G K + S K++ N+D + LV K
Sbjct: 147 REITRQQ-----GEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 7e-15
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 24/167 (14%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GK+ L+ + Y+ D I T+G F ++ V T+KL WD GQ RFR+
Sbjct: 13 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT 72
Query: 80 MWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE- 135
+ Y R + I VY V D ++ + + E+ + + L++GNK D +
Sbjct: 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKCDLKDK 128
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+ + + + + E S +STN++ + +
Sbjct: 129 RVVEYDVAKEFADANKMPFL---ET-----SALDSTNVEDAFLTMAR 167
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 4e-14
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSED-MIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFR 78
L+G GKT L+ G + I TVG F + + V +KL WD GQ RFR
Sbjct: 15 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR 74
Query: 79 SMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
S+ Y R A + + +Y V + A +DN+ +E+H+ + L++LGNK+D
Sbjct: 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGNKVDSAH 130
Query: 136 --ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+ +ED L ++ GL + E S K N+D + K K +
Sbjct: 131 ERVVKREDGEKLAKEYGLPFM---ET-----SAKTGLNVDLAFTAIAKELKRR 175
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 4e-14
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 16/139 (11%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFR- 78
+IG N GKT L G + + T+G F R V IK+ WD GQ RFR
Sbjct: 25 VIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK 84
Query: 79 SMWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
SM + Y R V A+V+V D + + +LP E L N IP +++GNK D
Sbjct: 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA---NDIPRILVGNKCDLRS 141
Query: 136 --ALSKED---LMEQMGLK 149
+ + + +
Sbjct: 142 AIQVPTDLAQKFADTHSMP 160
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 6e-14
Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 22/168 (13%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
+ + G GK+SLV G + + IPT+ R+V L D G +F
Sbjct: 11 VVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP 70
Query: 79 SMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
+M A +V+ V + L + + K S+ IP++++GNK D+ +
Sbjct: 71 AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQI--KGSVEDIPVMLVGNKCDETQ 128
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+ + + ++ C +M S K + N+ + L+
Sbjct: 129 REVDTREAQAVAQEWK---------CAFMETSAKMNYNVKELFQELLT 167
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-13
Identities = 38/174 (21%), Positives = 67/174 (38%), Gaps = 23/174 (13%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
+++ G GK+SLV G + E IPTV R+V L D G +F
Sbjct: 6 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP 65
Query: 79 SMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
+M A +VY + + L ++ ++ K + IP++++GNK D+
Sbjct: 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEI--KGDVESIPIMLVGNKCDESP 123
Query: 136 --ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVKHSKSK 183
+ + L C +M S K + N+ + L+ K +
Sbjct: 124 SREVQSSEAEALARTWK---------CAFMETSAKLNHNVKELFQELLNLEKRR 168
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 5e-13
Identities = 31/168 (18%), Positives = 65/168 (38%), Gaps = 23/168 (13%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
L ++G GK++L + + ++ PT+ + RK T L D GQ +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 65
Query: 79 SMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
+M ++Y R V+ + + ++++ R ++ + +P++++GNK D
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKSDLAA 122
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+ L G Y+ S K ++ LV+
Sbjct: 123 RTVESRQAQDLARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 2e-12
Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 5/119 (4%)
Query: 70 DLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELH---DLLSKPSLNGIPLLV 126
G + ++ C V +YV +A + H +G PLLV
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 127 LG-NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 184
L + + L ++ L + + + T I+W+++ +SK
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-12
Identities = 35/177 (19%), Positives = 71/177 (40%), Gaps = 33/177 (18%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVT----------KGNVTIKL--W 69
+G GKT+ + ++ I TVG F ++V + L W
Sbjct: 30 ALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLW 89
Query: 70 DLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 126
D GQ RFRS+ + R A+ + ++ + + N+ R+ + L + +++
Sbjct: 90 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV---RNWMSQLQANAYCENPDIVL 146
Query: 127 LGNKIDKPE--ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+GNK D P+ +++ L ++ G+ E S N++ ++ L+
Sbjct: 147 IGNKADLPDQREVNERQARELADKYGIPYF---ET-----SAATGQNVEKAVETLLD 195
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 61.3 bits (150), Expect = 2e-12
Identities = 37/169 (21%), Positives = 75/169 (44%), Gaps = 24/169 (14%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG-FNMRKVTKGNVTIKL--WDLGGQPRFR 78
+ ++G GK++L TG + E PT+ F +++ + L D G +F
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA 65
Query: 79 SMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
SM + Y + +VY +V+ + ++ R ++ + +P++++GNK+D
Sbjct: 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK---VPVILVGNKVDLES 122
Query: 136 --ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+S + L E+ G C +M S K+ T +D + +V+
Sbjct: 123 EREVSSSEGRALAEEWG---------CPFMETSAKSKTMVDELFAEIVR 162
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-12
Identities = 32/168 (19%), Positives = 70/168 (41%), Gaps = 23/168 (13%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VTKGNVTIKL--WDLGGQPRFR 78
L ++G GK++L + + ++ PT+ + RK V T L D GQ +
Sbjct: 24 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 83
Query: 79 SMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
+M ++Y R V+ + ++ + ++ + R ++ + +P++++GNK D P
Sbjct: 84 AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDD---VPMVLVGNKCDLPT 140
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+ + L + G ++ S K ++ LV+
Sbjct: 141 RTVDTKQAHELAKSYG---------IPFIETSAKTRQGVEDAFYTLVR 179
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-12
Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 12/120 (10%)
Query: 24 LIGLQNAGKTSLVN--VIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL----WDLGGQP 75
++G GK++L++ + +D T G + VT + T+ + D G
Sbjct: 25 VVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84
Query: 76 RFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
++ +Y AI V+ V +++ L + +++ NK D
Sbjct: 85 LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP-LRAVLVANKTD 143
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 2e-12
Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 24/169 (14%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
++++G ++ GK+SL G + + PT+ K+ L D GQ +
Sbjct: 9 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS 68
Query: 79 SMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
+ Y ++ +VY V ++ + V +L D++ K IP++++GNK D
Sbjct: 69 IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDLHM 125
Query: 136 --ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+S E+ L E ++ S K + V ++
Sbjct: 126 ERVISYEEGKALAESWN---------AAFLESSAKENQTAVDVFRRIIL 165
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 3e-12
Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 24/169 (14%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG-FNMRKVTKGNVTIKL--WDLGGQPRFR 78
L ++G GK++L + D PT+ + + + +L D GQ F
Sbjct: 12 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG 71
Query: 79 SMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
+M E+Y RA +V+ + D ++ + +++ + + P++++GNK D
Sbjct: 72 AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD---FPVVLVGNKADLES 128
Query: 136 --ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+ + + Y S K N+D + LV+
Sbjct: 129 QRQVPRSEASAFGASHH---------VAYFEASAKLRLNVDEAFEQLVR 168
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 4e-12
Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 26/165 (15%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRF 77
+ L+G GK++L P R++ + L +D+ Q
Sbjct: 26 VMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA 85
Query: 78 RS-MWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133
+ + + A IV+ V D + +P + L +P + +P++++GNK D
Sbjct: 86 GGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA--GRPHHD-LPVILVGNKSDL 142
Query: 134 PE--ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTV 172
+S E+ L + C ++ S N +
Sbjct: 143 ARSREVSLEEGRHLAGTLS---------CKHIETSAALHHNTREL 178
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 6e-12
Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 24/169 (14%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VTKGNVTIKL--WDLGGQPRFR 78
+ ++G + GKTSL + G +SE PTV K VT G L D GQ +
Sbjct: 27 VVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYS 86
Query: 79 SMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
+ + V +VY V + + +LH+ K +P++++GNK D
Sbjct: 87 ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR---VPVVLVGNKADLSP 143
Query: 136 --ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+ + L E G +M S + + + +++
Sbjct: 144 EREVQAVEGKKLAESWG---------ATFMESSARENQLTQGIFTKVIQ 183
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 6e-12
Identities = 32/168 (19%), Positives = 67/168 (39%), Gaps = 23/168 (13%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
L ++G GK++L + + ++ PT+ + RK T L D GQ +
Sbjct: 7 LVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 66
Query: 79 SMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
+M ++Y R V+ + + ++++ R ++ + +P++++GNK D P
Sbjct: 67 AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED---VPMVLVGNKCDLPS 123
Query: 136 -ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+ + L G ++ S K +D LV+
Sbjct: 124 RTVDTKQAQDLARSYG---------IPFIETSAKTRQGVDDAFYTLVR 162
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 7e-12
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 33/177 (18%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVT----------KGNVTIKL--W 69
+G GKTS++ G ++ I TVG F ++V I L W
Sbjct: 16 ALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLW 75
Query: 70 DLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 126
D G RFRS+ + R A+ + ++ + + + N+ R+ + L +++
Sbjct: 76 DTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV---RNWISQLQMHAYSENPDIVL 132
Query: 127 LGNKIDKPE--ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
GNK D + A+ +E+ L E+ G+ E S N TNI I+ L+
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYF---ET-----SAANGTNISHAIEMLLD 181
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 8e-12
Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 26/165 (15%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRF 77
+ L+G GK++L R++ + L +D+ Q
Sbjct: 5 VMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDA 64
Query: 78 RS-MWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133
+ + + A IV+ V D + +P + L +P++++GNK D
Sbjct: 65 GGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD---LPVILVGNKSDL 121
Query: 134 PE--ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTV 172
+S E+ L + C ++ S N +
Sbjct: 122 ARSREVSLEEGRHLAGTLS---------CKHIETSAALHHNTREL 157
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 1e-11
Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 24/169 (14%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
+ ++G GK++L + ED PT + RK +++ D GQ +
Sbjct: 21 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 80
Query: 79 SMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
++ + Y R+ V+ + + + R ++ + + +P L++GNK D +
Sbjct: 81 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLLVGNKSDLED 137
Query: 136 --ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+S E+ EQ Y+ S K N+D V L++
Sbjct: 138 KRQVSVEEAKNRAEQWN---------VNYVETSAKTRANVDKVFFDLMR 177
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 1e-11
Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 24/174 (13%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
+ ++G GK++L + ED PT + RK +++ D GQ +
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 66
Query: 79 SMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
++ + Y R+ V+ + + + R ++ + + +P L++GNK D +
Sbjct: 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLLVGNKSDLED 123
Query: 136 --ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVKHSKSK 183
+S E+ +Q Y+ S K N+D V L++ +++
Sbjct: 124 KRQVSVEEAKNRADQWN---------VNYVETSAKTRANVDKVFFDLMREIRAR 168
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-11
Identities = 29/174 (16%), Positives = 64/174 (36%), Gaps = 29/174 (16%)
Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKL--WDLGGQP 75
E+++ ++G ++GK++LV+ TG Y ++ P G +++ + L D GG P
Sbjct: 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPP 78
Query: 76 RFRSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
++ V A V+ + D + + L + +P++++G +
Sbjct: 79 EL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE---VPMVLVGTQDA 130
Query: 133 KPEALSKE-------DLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
A + L + C Y N++ V + +
Sbjct: 131 ISAANPRVIDDSRARKLSTDLK--------RCTYYETCATYGLNVERVFQDVAQ 176
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 3e-11
Identities = 30/169 (17%), Positives = 56/169 (33%), Gaps = 25/169 (14%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
+ L+G GK++L I G G + L +D+ Q R
Sbjct: 5 VLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 63
Query: 79 SMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
+ A IVY V D ++ R +L +P++++GNK D
Sbjct: 64 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD---VPIILVGNKSDLVR 120
Query: 136 --ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+S ++ C ++ S N+ + + +V+
Sbjct: 121 SREVSVDEGRACAVVFD---------CKFIETSAALHHNVQALFEGVVR 160
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 6e-11
Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 24/169 (14%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
+ ++G GK++L + ED PT + RK +++ D GQ +
Sbjct: 17 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 76
Query: 79 SMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
++ + Y R+ V+ + + + R ++ + + +P L++GNK D +
Sbjct: 77 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLLVGNKSDLED 133
Query: 136 --ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+S E+ EQ Y+ S K N+D V L++
Sbjct: 134 KRQVSVEEAKNRAEQWN---------VNYVETSAKTRANVDKVFFDLMR 173
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 2e-10
Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 21/172 (12%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VTKGNVTIKL--WDLGG 73
E+ L ++G +GK+SL++ TG Y + + T +K + T + + G
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAG 63
Query: 74 QPRFRSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNG-IPLLVLGN 129
P ++ A V+ + D + + +L L + + L+ +
Sbjct: 64 APDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118
Query: 130 KIDKPE--ALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+I + D + C Y N+D V + +
Sbjct: 119 RISASSPRVVGDAR-----ARALXADMKRCSYYETXATYGLNVDRVFQEVAQ 165
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-10
Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 17/166 (10%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VTKGNVTIKL--WDLGGQPRFR 78
L ++G GK++L G + E PT+ + RK V L D G +F
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT 65
Query: 79 SMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
+M + Y + +VY + + +++L R ++ + +P++++GNK D +
Sbjct: 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED---VPMILVGNKCDLED 122
Query: 136 --ALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+ KE G C ++ S K+ N++ + LV+
Sbjct: 123 ERVVGKEQ-----GQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 7e-10
Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 25/170 (14%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG-FNMRKVTKGNVTIKL--WDLGGQPRFR 78
L ++G GK++L + +D PT+ ++ N L D GQ F
Sbjct: 21 LVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS 80
Query: 79 SMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
+M E+Y R IVY V D A ++++ + + + S P++++ NK+D
Sbjct: 81 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES---FPMILVANKVDLMH 137
Query: 136 --ALSKED---LMEQMGLKSITDREVCCYM-ISCKNST-NIDTVIDWLVK 178
++++ + + Y+ S K+ N+D LV+
Sbjct: 138 LRKVTRDQGKEMATKYN---------IPYIETSAKDPPLNVDKTFHDLVR 178
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 9e-10
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 26/182 (14%)
Query: 12 RSLFFKQEME--LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL 68
+L+F+ +E L+++G + AGK++L T + + P + + + L
Sbjct: 12 ENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHL 71
Query: 69 --WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIP 123
D R+ ERY A +VY V +D+ L L +K + IP
Sbjct: 72 RVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELL-ALHAKETQRSIP 129
Query: 124 LLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVCCYM-ISCK-NSTNIDTVIDWL 176
L+LGNK+D + ++K + L + G C + +S + ++ V
Sbjct: 130 ALLLGNKLDMAQYRQVTKAEGVALAGRFG---------CLFFEVSACLDFEHVQHVFHEA 180
Query: 177 VK 178
V+
Sbjct: 181 VR 182
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 2e-09
Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 16/141 (11%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQPRFRSM 80
++G GKT+L++V A + E+ +PTV N ++ + + LWD G P + ++
Sbjct: 12 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV 71
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLN----GIPLLVLGNKIDKP 134
A++ D L +L K + +L++G K D
Sbjct: 72 RPLSYPDSDAVLICFDI-------SRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124
Query: 135 EALSKEDLMEQMGLKSITDRE 155
+S + ++ +
Sbjct: 125 TDVSTLVELSNHRQTPVSYDQ 145
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 2e-09
Identities = 35/177 (19%), Positives = 64/177 (36%), Gaps = 26/177 (14%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGG 73
Q ++ ++G GKT L+ T + + IPTV N V V + LWD G
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLN----GIPLLVL 127
Q + + + VS + ++ +K P + P++++
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSL-------VSPASFENVRAKWYPEVRHHCPNTPIILV 140
Query: 128 GNKIDKPEALSKEDLMEQMGLKSITDREV---------CCYM-ISCKNSTNIDTVID 174
G K+D + + +++ L IT + Y+ S + TV D
Sbjct: 141 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 4e-09
Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 22/175 (12%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGG 73
Q ++ ++G GKT L+ T + + IPTV N V V + LWD G
Sbjct: 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 62
Query: 74 QPRFRSMWERYCRAVSAIVY---VVDAADYDN-LPVSRSELHDLLSKPSLNGIPLLVLGN 129
Q + + + +V A ++N E+ P++++G
Sbjct: 63 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGT 117
Query: 130 KIDKPEALSKEDLMEQMGLKSITDREV---------CCYM-ISCKNSTNIDTVID 174
K+D + + +++ L IT + Y+ S + TV D
Sbjct: 118 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 172
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 7e-09
Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 26/171 (15%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPT-VGFNMRKVTKGNVTIKL--WDLGGQPRFR 78
+ L+G GKTSL ++ A + R +T L D +
Sbjct: 7 VVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD 66
Query: 79 S--MWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133
E + SA IVY + D +++ R +L +P++++GNK D
Sbjct: 67 KSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADH---VPIILVGNKADL 123
Query: 134 PE--ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+S E+ C ++ S N+ + + +V+
Sbjct: 124 ARCREVSVEEGRACAVVFD---------CKFIETSATLQHNVAELFEGVVR 165
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-08
Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 26/174 (14%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQPRFRSM 80
++G GKT L+ A + E+ +PTV + V + L+D GQ + +
Sbjct: 23 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL 82
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLN----GIPLLVLGNKIDKP 134
+ V+ + ++ + P L +P L++G +ID
Sbjct: 83 RPLSYPMTDVFLICFSV-------VNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135
Query: 135 EALSKEDLMEQMGLKSITDRE----------VCCYMISCKNSTNIDTVIDWLVK 178
+ + M K I + C S + TV D +
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 189
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Length = 364 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-08
Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 32/174 (18%)
Query: 23 SLIGLQNAGKTSLVNVIATGG-YSEDMI-----PTVGFNMRKVTKGNVTIKLWDLGGQPR 76
++G N+GKTSL N + + + P + N I L D G R
Sbjct: 183 GIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKR----YAIPINNRKIMLVDTVGFIR 238
Query: 77 ---------FRSMWERYCRAVSAIVYVVDAADYD-----NLPVSRSELHDLLSKPSLNGI 122
F + A++ V+D+ + L S L ++ ++G
Sbjct: 239 GIPPQIVDAFFVTLSEAKYS-DALILVIDSTFSENLLIETLQSSFEILREI----GVSGK 293
Query: 123 PLLVLGNKIDK--PEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174
P+LV NKIDK + K DL+E++ + + IS TN++ + D
Sbjct: 294 PILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP-ISALKRTNLELLRD 346
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-08
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQP 75
E++L++ G GK++LV T + + PT+ R + + + D GQ
Sbjct: 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 87
Query: 76 RFRSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
E + R +VY + D ++ + ++ L ++ + + L+++GNK D
Sbjct: 88 DTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN---VTLILVGNKAD 143
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 3e-08
Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 26/170 (15%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQPRFRSM 80
++G GKT L+ V + + E +PTV N +V V + LWD GQ + +
Sbjct: 30 IVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRL 89
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLN----GIPLLVLGNKIDKP 134
I+ S L ++ K P + +P++++GNK D
Sbjct: 90 RPLSYPDTDVILMCFSI-------DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 142
Query: 135 EALSKEDLMEQMGLKSITDRE---------VCCYM-ISCKNSTNIDTVID 174
+ + +M + + E Y+ S K + V +
Sbjct: 143 QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 4e-08
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 12/139 (8%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQPRFRSM 80
L+G GKT+++ V+A Y E +PTV N + + V + LWD G P + ++
Sbjct: 32 LVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNV 91
Query: 81 WERYCRAVSAIVY---VVDAADYDNLPVS-RSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
A++ + D+ R+E+ D +L++G K D
Sbjct: 92 RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-----STRVLLIGCKTDLRTD 146
Query: 137 LSKEDLMEQMGLKSITDRE 155
LS + I+ +
Sbjct: 147 LSTLMELSHQKQAPISYEQ 165
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-08
Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 32/180 (17%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLG 72
K+ +++ ++G GKT L+ + G +PTV N + LWD
Sbjct: 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTA 79
Query: 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLN----GIPLLV 126
GQ + + ++ +R+ ++ +K P + ++
Sbjct: 80 GQEEYDRLRPLSYADSDVVLLCFAV-------NNRTSFDNISTKWEPEIKHYIDTAKTVL 132
Query: 127 LGNKID----KPEALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+G K+D + ++K++ L +++G Y+ S ++ V + V
Sbjct: 133 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCV--------AYIEASSVAKIGLNEVFEKSVD 184
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 6e-08
Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 26/176 (14%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQPRFRSM 80
L+G GKTSLV T GY + IPT N + V V ++L D GQ F +
Sbjct: 25 LVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL 84
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLN----GIPLLVLGNKIDKP 134
+ VS S ++ K P + P++++G + D
Sbjct: 85 RPLCYTNTDIFLLCFSV-------VSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137
Query: 135 EALSKEDLMEQMGLKSITDREV---------CCYM-ISCKNSTNIDTVIDWLVKHS 180
E + +++ K + + Y+ S N+ V D +
Sbjct: 138 EDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-07
Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 28/176 (15%)
Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQ 74
+ ++ +G GKT L+ + + D +PTV N V V + LWD GQ
Sbjct: 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ 66
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLN----GIPLLVLG 128
+ + R + +S++ ++ K P L G+P++++G
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSL-------ISKASYENVSKKWIPELKHYAPGVPIVLVG 119
Query: 129 NKIDKPEALSKEDLMEQMGLKSITDRE---------VCCYM-ISCKNSTNIDTVID 174
K+D + K+ ++ G IT + Y+ S K+ N+ V D
Sbjct: 120 TKLDLRD--DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFD 173
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-07
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 34/180 (18%)
Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQ 74
+ +++ L+G GKTSL+ V A G + E PTV +V V + +WD GQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 75 PRFRSMWER---YCRA-VSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLN----GIPL 124
+ + R Y A V + + V S + ++ ++ P +N +P+
Sbjct: 93 DDYDRL--RPLFYPDASVLLLCFDVT---------SPNSFDNIFNRWYPEVNHFCKKVPI 141
Query: 125 LVLGNKIDKPEALSKEDLMEQMGLKSITDRE---------VCCYM-ISCKNSTNIDTVID 174
+V+G K D + S + + + GL+ +T Y+ S + N+ V
Sbjct: 142 IVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQ 201
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-07
Identities = 23/173 (13%), Positives = 58/173 (33%), Gaps = 19/173 (10%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDM---IPTVGFNMRKVTKGNVTIKLWD----LGGQ 74
+ L G N GK+S +N++ + + T + ++ D L
Sbjct: 32 IILSGAPNVGKSSFMNIV-SRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90
Query: 75 PRFRSMWERYCRAV-----SAIVYVVDAADYDNLPVS--RSELHDLLSKPSLNGIPLLVL 127
R+ E I++++D ++ L + + + + K + +++
Sbjct: 91 FENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSI--KSVFSNKSIVIG 148
Query: 128 GNKID--KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
NKID ++LS ++ + + + S ++ +
Sbjct: 149 FNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACE 201
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 4e-07
Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 26/170 (15%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSM 80
++G GKT L+ V + + E +PTV N +V V + LWD GQ + +
Sbjct: 30 VVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL 89
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLN----GIPLLVLGNKIDKP 134
I+ S L ++ K P + +P++++ NK D
Sbjct: 90 RPLSYPDTDVILMCFSV-------DSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR 142
Query: 135 EALSKEDLMEQMGLKSITDRE---------VCCYMI-SCKNSTNIDTVID 174
+ +M + + + Y+ S K + V +
Sbjct: 143 SDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFE 192
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 5e-07
Identities = 37/195 (18%), Positives = 69/195 (35%), Gaps = 58/195 (29%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK-------------- 67
L+G + GK+S+V + + E+ T+G F V ++ IK
Sbjct: 12 LLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSI 71
Query: 68 -------------------------LWDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAAD 99
+WD GQ R+ S+ Y R A AI V+ + ++
Sbjct: 72 NDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT 131
Query: 100 YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE-ALSKEDLMEQMGLKSITDREVCC 158
D ++L + ++++ NKIDK + + + ++
Sbjct: 132 LDRAKTWVNQLK------ISSNYIIILVANKIDKNKFQVDILE------VQKYAQDNNLL 179
Query: 159 YM-ISCKNSTNIDTV 172
++ S K TNI +
Sbjct: 180 FIQTSAKTGTNIKNI 194
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 6e-07
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 107
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 236
Query: 108 SELHDLL----------SKPSLNGIPLLVLGNKIDKPE 135
E++ + + +++ NK D E
Sbjct: 237 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE 274
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-06
Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 28/174 (16%)
Query: 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGG------ 73
+ + G N GK++L+ + T P T G N+ + G ++ D G
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229
Query: 74 -------QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS--RSELHDLLSKPSLNGIPL 124
+ ++ + I+Y+ D +++ P+ ++ +P
Sbjct: 230 SERNEIEKQAILALRYL----GNLIIYIFDPSEHCGFPLEEQIHLFEEV--HGEFKDLPF 283
Query: 125 LVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
LV+ NKID + + + L + + ++ + IS T ID V + ++K
Sbjct: 284 LVVINKIDVADEENIKRLEKF-----VKEKGLNPIKISALKGTGIDLVKEEIIK 332
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-06
Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 16/141 (11%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQPRFRSM 80
++G GKT+L++V A + E+ +PTV N ++ + + LWD G P + ++
Sbjct: 33 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV 92
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLN----GIPLLVLGNKIDKP 134
A++ D L +L K + +L++G K D
Sbjct: 93 RPLSYPDSDAVLICFDI-------SRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145
Query: 135 EALSKEDLMEQMGLKSITDRE 155
+S + ++ +
Sbjct: 146 TDVSTLVELSNHRQTPVSYDQ 166
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-06
Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 34/171 (19%)
Query: 31 GKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRA 87
GKT ++ + + D IPTV N V V + LWD GQ + + R
Sbjct: 21 GKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRG 80
Query: 88 VSA--IVYVVDAADYDNLPVSRSELHDLLSK--PSLN----GIPLLVLGNKIDKPEALSK 139
+ + + S++ ++L K P L +P++++G K+D L
Sbjct: 81 ADIFVLAFSLI---------SKASYENVLKKWMPELRRFAPNVPIVLVGTKLD----LRD 127
Query: 140 EDLMEQMGLKSITDRE---------VCCYM-ISCKNSTNIDTVIDWLVKHS 180
+ IT + Y+ S K N+ V D +K
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 4e-06
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN----- 102
+PT G +V ++ D+GGQ R W V++I+++V ++YD
Sbjct: 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 210
Query: 103 -----LPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
+ S++ +++ P +++ NK D
Sbjct: 211 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 7e-06
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 107
PT G + NV K+ D+GGQ R W +V++I+++V ++++D + +
Sbjct: 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMED 244
Query: 108 SELHDL----------LSKPSLNGIPLLVLGNKIDKPE 135
+ + L ++ + + +++ NK D E
Sbjct: 245 RQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE 282
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 8e-06
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 107
+ T G K V ++D+GGQ R W + V+AI++VV ++ Y+ +
Sbjct: 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIRED 260
Query: 108 SELHDL----------LSKPSLNGIPLLVLGNKID 132
++ + L + L I +++ NK D
Sbjct: 261 NQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 8e-06
Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 21/169 (12%)
Query: 22 LSLIGLQNAGKTSLVN--VIATGGYSEDMIPTVGFNMRKVT----KGNVTIKL--WDLGG 73
+ LIG Q GK++L N D + + I L W+ G
Sbjct: 9 VVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKG 68
Query: 74 QPRFRSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
+ + + + + A IVY + D A ++ R +L ++ + + IP++++GNK
Sbjct: 69 ENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRR--ARQTED-IPIILVGNK 123
Query: 131 IDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
D L + + ++ ++ S N+ + + +V+
Sbjct: 124 SD----LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVR 168
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 31/174 (17%)
Query: 22 LSLIGLQNAGKTSLVN--VIATGGYSEDMIPTVGFNMRKVT----KGNVTIKL--WDLGG 73
+ LIG Q GK++L N D + + I L W+ G
Sbjct: 40 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG 99
Query: 74 QPRFRSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
+ + + + + A IVY + D A ++ R +L ++ + + IP++++GNK
Sbjct: 100 ENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRR--ARQTED-IPIILVGNK 154
Query: 131 IDKPE--ALSKED---LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
D +S + C ++ S N+ + + +V+
Sbjct: 155 SDLVRCREVSVSEGRACAVVFD---------CKFIETSAAVQHNVKELFEGIVR 199
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-05
Identities = 26/174 (14%), Positives = 50/174 (28%), Gaps = 30/174 (17%)
Query: 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGF--NMRKVTKGNVTI 66
L L + + + G+ +GKT + + + + F N++ +
Sbjct: 142 QALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 67 K-LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 125
+ L L + W S I + + ++EL LL LL
Sbjct: 200 EMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSI--------QAELRRLLKSKPYE-NCLL 248
Query: 126 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
VL N + L C +++ + D + H
Sbjct: 249 VLLNVQNA-------KAWNAFNLS-------CKILLTTRFKQVTDFLSAATTTH 288
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 7e-05
Identities = 18/88 (20%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 91 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS 150
+++V+DA+ + E +L + + LV+ NK+D E +++E++ ++G
Sbjct: 327 VLFVLDASSPLD-----EEDRKILER--IKNKRYLVVINKVDVVEKINEEEIKNKLG--- 376
Query: 151 ITDREVCCYMISCKNSTNIDTVIDWLVK 178
TDR + IS ++ + + + +
Sbjct: 377 -TDRHMVK--ISALKGEGLEKLEESIYR 401
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 1e-04
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM- 146
V +++VV+ + + +L+K P+++ NK+D + K DL+ +
Sbjct: 89 VELVIFVVEGTRWT------PDDEMVLNKLREGKAPVILAVNKVDNVQ--EKADLLPHLQ 140
Query: 147 GLKSITD-REVCCYMISCKNSTNIDTVIDWLVKH 179
L S + ++ IS + N+DT+ + KH
Sbjct: 141 FLASQMNFLDI--VPISAETGLNVDTIAAIVRKH 172
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 1e-04
Identities = 17/95 (17%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDL---ME 144
I++++DA + + + P++V+ NKIDK +++ ++
Sbjct: 93 ADVILFMIDATE----GWRPRDEEIYQNFIKPLNKPVIVVINKIDKIG--PAKNVLPLID 146
Query: 145 QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
++ K E+ IS N+D ++ ++K+
Sbjct: 147 EIHKKHPELTEI--VPISALKGANLDELVKTILKY 179
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG 147
+ V D+A ++ +L + IP +V+ NKID K + ++ +
Sbjct: 114 ADCGILVTDSAPTP----YEDDVVNLFKE---MEIPFVVVVNKIDVLGE--KAEELKGL- 163
Query: 148 LKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
+S + +V +S D + + +
Sbjct: 164 YESRYEAKVLL--VSALQKKGFDDIGKTISEI 193
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 2e-04
Identities = 20/151 (13%), Positives = 48/151 (31%), Gaps = 15/151 (9%)
Query: 2 GLWEAFLNWLRSLFFKQE---MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK 58
G + + + + + + +++ G +GK+S +N + G E+ G + +
Sbjct: 49 GNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTG--VVE 106
Query: 59 VTK--------GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSEL 110
VT + WDL G + Y + Y ++++
Sbjct: 107 VTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISAT-RFKKNDI 165
Query: 111 HDLLSKPSLNGIPLLVLGNKIDKPEALSKED 141
+ S+ + K+D +
Sbjct: 166 D-IAKAISMMKKEFYFVRTKVDSDITNEADG 195
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 2e-04
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 91 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS 150
++ +DAA + ++ + PL+++ NKID E L +
Sbjct: 307 VLLTIDAATGWT-----TGDQEIY--EQVKHRPLILVMNKIDLVEKQLITSLEYPENITQ 359
Query: 151 ITDREVCCYMISCKNSTNIDTVIDWLVK 178
I + ID++ +++
Sbjct: 360 I-------VHTAAAQKQGIDSLETAILE 380
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301 | Back alignment and structure |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 88 VSAIVYVVDAADYDNLPVSRSELH--DLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQ 145
V+A+V+VVD P + + L KP + +P+L++GNK+D + E+ M+
Sbjct: 87 VNAVVWVVDLRH----PPTPEDELVARAL-KPLVGKVPILLVGNKLDAAK--YPEEAMKA 139
Query: 146 MGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
+ + + E M+S + + + L+
Sbjct: 140 YH-ELLPEAEP--RMLSALDERQVAELKADLLAL 170
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 3e-04
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 56/172 (32%)
Query: 31 GKTSLV------NVIAT---------GGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75
GKT+L+ V G Y V N +K+T D G
Sbjct: 20 GKTTLLDAIRHSKVTEQEAGGITQHIGAY------QVTVNDKKIT-------FLDTPGHE 66
Query: 76 RFRSMWERYCRA----VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
F +M RA V+ IV +V AAD +P + ++ +K + +P++V NK+
Sbjct: 67 AFTTM-----RARGAQVTDIVILVVAADDGVMPQTVEAINH--AKAA--NVPIIVAINKM 117
Query: 132 DKPEA--------LSKEDLM-EQMGLKSITDREVCCYMISCKNSTNIDTVID 174
DKPEA L + +L+ E+ G +I +S K +D +++
Sbjct: 118 DKPEANPDRVMQELMEYNLVPEEWGGDTI------FCKLSAKTKEGLDHLLE 163
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368 | Back alignment and structure |
|---|
Score = 38.4 bits (89), Expect = 7e-04
Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKID-KP 134
F + ++ + +V +VD D++ S LH + +L++GNK D P
Sbjct: 59 FLRILNGIGKSDALVVKIVDIFDFNG---SWLPGLHRFV-----GNNKVLLVGNKADLIP 110
Query: 135 EALSKEDLME--QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+++ + + + K + + ++IS I + D + + K
Sbjct: 111 KSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGK 161
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 38.2 bits (88), Expect = 8e-04
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Query: 39 IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98
+ T G E VG N + +L+D+GGQ R W V+A+++ +
Sbjct: 162 VRTTGVVEIQFSPVGENKKS----GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217
Query: 99 DYDNLPVSRSELHDL----------LSKPSLNGIPLLVLGNKID 132
+YD + + + L +P ++ NK D
Sbjct: 218 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 184 | |||
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 100.0 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 100.0 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 100.0 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 100.0 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 100.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 100.0 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 100.0 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 100.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 100.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 100.0 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 100.0 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 100.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 100.0 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 100.0 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.97 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.97 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.97 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.97 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.97 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.97 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.97 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.97 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.97 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.97 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.97 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.97 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.97 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.97 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.97 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.97 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.97 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.97 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.97 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.97 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.97 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.97 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.97 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.97 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.97 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.97 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.97 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.97 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.97 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.97 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.97 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.97 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.97 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.97 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.97 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.97 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.97 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.97 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.97 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.97 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.97 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.97 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.97 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.97 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.97 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.97 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.97 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.97 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.97 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.97 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.97 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.97 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.97 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.97 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.97 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.97 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.97 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.97 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.97 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.97 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.97 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.97 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.96 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.96 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.96 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.96 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.96 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.96 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.96 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.96 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.96 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.96 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.96 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.96 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.96 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.96 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.96 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.96 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.96 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.96 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.96 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.92 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.96 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.95 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.95 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.95 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.95 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.95 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.95 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.95 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.95 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.94 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.94 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.94 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.94 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.94 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.94 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.94 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.94 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.93 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.93 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.93 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.93 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.93 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.92 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.92 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.92 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.92 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.92 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.91 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.91 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.91 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.91 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.91 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.91 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.91 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.9 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.9 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.9 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.9 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.9 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.9 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.9 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.9 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.9 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.89 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.89 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.89 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.89 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.89 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.89 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.89 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.89 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.89 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.88 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.88 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.88 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.88 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.88 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.88 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.88 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.87 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.87 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.87 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.87 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.86 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.86 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.86 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.86 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.86 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.86 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.85 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.85 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.85 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.84 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.84 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.84 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.84 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.84 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.84 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.83 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.82 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.82 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.82 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.81 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.81 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.81 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.8 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.78 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.78 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.78 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.77 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.73 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.72 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.71 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.71 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.7 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.7 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.7 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.7 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.7 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.69 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.66 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.66 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.65 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.64 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.63 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.62 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.62 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.6 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.57 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.54 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.49 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.33 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.22 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.14 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.11 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.09 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.05 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.01 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.95 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.95 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.93 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.9 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.85 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.7 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.66 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.64 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.49 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.49 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.48 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.37 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.19 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.06 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.05 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.98 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.98 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.94 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.91 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.87 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.85 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.83 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.81 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.8 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.8 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 97.74 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.73 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.73 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.72 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.71 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.71 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.7 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.69 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.69 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.69 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.68 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.68 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.66 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.66 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.66 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.64 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.64 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.64 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.63 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.63 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.63 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.62 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.62 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.62 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.61 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.61 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.61 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.61 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.61 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.6 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.6 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.6 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.59 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.59 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.58 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.58 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.58 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.57 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.56 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.56 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.55 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.54 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.53 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 97.49 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.49 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.48 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.48 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.48 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.47 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 97.46 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 97.46 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.46 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.46 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.45 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.44 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.42 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.42 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.41 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.41 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 97.4 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 97.4 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.4 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.4 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.4 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.39 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 97.39 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 97.39 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.38 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.38 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.37 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.37 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.37 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 97.37 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.34 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.34 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 97.33 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.33 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.33 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.32 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.32 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.32 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 97.32 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 97.32 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.31 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.31 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 97.3 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.3 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.3 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.29 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.29 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.29 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.28 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 97.28 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.27 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.27 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.27 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.26 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.26 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.26 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.25 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.25 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.25 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.24 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 97.23 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.22 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 97.22 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.21 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.21 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.21 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.2 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.2 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.19 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 97.19 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.19 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.18 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 97.18 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.17 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 97.17 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.17 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 97.16 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 97.16 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.15 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.15 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.14 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.14 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 97.14 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.13 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.12 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.12 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 97.12 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.11 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 97.11 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 97.11 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.1 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.09 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.09 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.09 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.09 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.08 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 97.07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.06 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 97.06 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 97.06 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 97.05 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.05 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 97.04 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 97.04 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 97.04 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.03 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.03 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 97.03 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 97.02 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.0 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.99 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.99 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.99 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.99 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.99 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.99 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.98 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.96 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 96.96 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.96 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.95 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.94 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.94 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.94 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.94 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.93 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.93 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.93 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.93 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.92 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.91 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.91 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.9 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.9 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.9 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.88 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.86 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.86 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.86 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.86 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 96.85 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.84 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.83 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 96.83 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.82 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.82 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 96.81 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.81 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.8 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.8 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.79 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.79 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.78 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 96.77 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.76 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.75 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.75 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.73 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.7 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.7 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.7 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 96.69 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.69 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.68 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.68 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.68 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.67 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.66 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 96.63 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 96.61 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.59 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.57 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.57 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.56 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.55 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.55 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 96.5 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.5 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.49 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.43 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.43 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.42 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.4 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.4 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.4 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 96.39 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.39 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 96.38 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 96.37 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.37 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 96.36 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.36 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.36 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 96.33 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.32 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.32 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 96.29 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.28 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.28 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 96.27 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 96.26 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.26 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 96.23 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 96.22 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.22 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.22 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.22 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.21 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 96.2 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.18 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 96.18 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 96.18 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.17 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 96.16 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.15 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 96.15 |
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=204.13 Aligned_cols=177 Identities=28% Similarity=0.524 Sum_probs=145.4
Q ss_pred Cc-hHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchH
Q 029978 1 MG-LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
|| ++.++.+ ++.++.++|+++|++|||||||++++.++.+. .+.+|.+.....+...+..+.+|||||++++..
T Consensus 1 m~~~~~~~~~----~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 75 (187)
T 1zj6_A 1 MGILFTRIWR----LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRS 75 (187)
T ss_dssp -CHHHHHHHH----HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETTEEEEEEECCC----CG
T ss_pred CchHHHHHHH----hcCCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEECCEEEEEEECCCCHhHHH
Confidence 56 5556555 45578899999999999999999999988776 667788777777777889999999999999998
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEE
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCY 159 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+..+++.+|++++|+|+++.+++.....++..+.......+.|+++|+||+|+.+....+++.+.++........++++
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 155 (187)
T 1zj6_A 76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ 155 (187)
T ss_dssp GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEE
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEE
Confidence 88999999999999999999999999999988887754446899999999999987666677777766543444567899
Q ss_pred EeeeCCCCCHHHHHHHHHHHhhh
Q 029978 160 MISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
++||++|.|+++++++|.+.+..
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 156 ACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHCC
T ss_pred EccCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=204.36 Aligned_cols=172 Identities=31% Similarity=0.581 Sum_probs=144.1
Q ss_pred HHhhcc-CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCC
Q 029978 11 LRSLFF-KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVS 89 (184)
Q Consensus 11 ~~~~~~-~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (184)
+++++. ++.++|+++|++|+|||||++++.++. ...+.+|.+.....+......+.+|||||++.+...+..+++.+|
T Consensus 9 ~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 87 (186)
T 1ksh_A 9 LKKMKQKERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTD 87 (186)
T ss_dssp --------CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCS
T ss_pred HHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCC
Confidence 344444 788999999999999999999999877 777788888777777778899999999999999888899999999
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|+
T Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (186)
T 1ksh_A 88 GLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDL 167 (186)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCH
Confidence 99999999999999999888888877654568999999999999887677777777665444455678999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 029978 170 DTVIDWLVKHSKSK 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
+++++++.+.+.+.
T Consensus 168 ~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 168 LPGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987653
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-36 Score=207.12 Aligned_cols=182 Identities=34% Similarity=0.582 Sum_probs=152.0
Q ss_pred Cc-hHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchH
Q 029978 1 MG-LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
|| ++.++.+|++.+..++.++|+++|++|+|||||++++.++.+.. ..+|.+.....+......+.+|||||++.+..
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 81 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETLQYKNISFEVWDLGGQTGVRP 81 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCEEEEEETTEEEEEEEECCSSSSCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEEEEEEECCEEEEEEECCCCHhHHH
Confidence 45 55667777655432788999999999999999999998777653 56777777667777889999999999999888
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEE
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCY 159 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+..+++.+|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........++++
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIV 161 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEE
Confidence 88888999999999999999999999988888887765557899999999999988767777777776555555567899
Q ss_pred EeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 160 MISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
+|||+++.|++++++++.+.+.+.
T Consensus 162 ~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 162 KSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred EccCCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999999988754
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=202.96 Aligned_cols=178 Identities=31% Similarity=0.617 Sum_probs=146.5
Q ss_pred Cc-hHHHHHHHHHhhcc-CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 1 MG-LWEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 1 ~~-~~~~~~~~~~~~~~-~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
|| ++.++. ++++. ++.++|+++|++|||||||++++.++.+ ..+.+|.+.....+...+..+.+|||||++.+.
T Consensus 1 mg~~~~~~~---~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 1 MGNIFSSMF---DKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp -CHHHHHHH---GGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEETTEEEEEEEEC----CC
T ss_pred CchHHHHHH---HHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEECCEEEEEEECCCCHhHH
Confidence 55 444443 44555 7899999999999999999999997776 566778877766677778999999999999988
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeE
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCC 158 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
..+..+++.+|++++|+|+++.+++.....++..+.......+.|+++|+||+|+.+....+++.+.++........+++
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 88889999999999999999999999999988888776555789999999999998776777887777765555566789
Q ss_pred EEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 159 YMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 159 ~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+++||++|.|++++++++.+.+.+
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999999998764
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=217.87 Aligned_cols=159 Identities=22% Similarity=0.383 Sum_probs=122.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.+||+++|++|||||||+++|..+.|...+.+|++.++.. .+...+.+.+|||+|++++..++..+++.+++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 357999999999999999999999999999999999865543 3345689999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|||++++++|..+..|+..+..... .++|++||+||+|+.+.. ..++..+... ...+++++|||++|.||+
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a~-----~~~~~~~e~SAktg~nV~ 164 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAK-----ELNVMFIETSAKAGYNVK 164 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEEBTTTTBSHH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhHHH-----HhCCeeEEEeCCCCcCHH
Confidence 99999999999999999988765433 689999999999997642 2222222111 123469999999999999
Q ss_pred HHHHHHHHHhh
Q 029978 171 TVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
++|+.|++.+.
T Consensus 165 e~F~~i~~~i~ 175 (216)
T 4dkx_A 165 QLFRRVAAALP 175 (216)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999998775
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=201.33 Aligned_cols=169 Identities=67% Similarity=1.172 Sum_probs=146.7
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
..++.++|+++|++|+|||||++++.++.+...+.+|.+.....++...+.+.+|||||++.+...+..+++.+|++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 34567999999999999999999999999888888999988888888899999999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+|+++.+++.....++..+.......++|+++|+||+|+.+....+++.+.++........++++++||++|.|++++++
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 177 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ 177 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHH
Confidence 99999999999988888887654446899999999999987766677777776554445567899999999999999999
Q ss_pred HHHHHhhhc
Q 029978 175 WLVKHSKSK 183 (184)
Q Consensus 175 ~i~~~~~~~ 183 (184)
+|.+.+.+.
T Consensus 178 ~l~~~~~~~ 186 (188)
T 1zd9_A 178 WLIQHSKSR 186 (188)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhh
Confidence 999987654
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=201.86 Aligned_cols=173 Identities=31% Similarity=0.587 Sum_probs=142.4
Q ss_pred HHHhhcc--CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccC
Q 029978 10 WLRSLFF--KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA 87 (184)
Q Consensus 10 ~~~~~~~--~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 87 (184)
+++++.. .+.++|+++|++|||||||++++.+..+ ..+.+|.+.....+....+.+.+|||||++.+...+..+++.
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 83 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFEN 83 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTT
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCC
Confidence 3445555 5789999999999999999999987643 345677776666666778999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........+++++|||++|.
T Consensus 84 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (181)
T 1fzq_A 84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE 163 (181)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCC
Confidence 99999999999999999988888887765445689999999999998776667777776654444456789999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 029978 168 NIDTVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~~ 183 (184)
|++++++++.+.+.+.
T Consensus 164 gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 164 GVQDGMNWVCKNVNAK 179 (181)
T ss_dssp THHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999887654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=195.35 Aligned_cols=163 Identities=29% Similarity=0.627 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
++|+++|++|+|||||++++.++.+.. ..||.+.....++...+.+.+|||||++.+...+..+++.+|++++|+|+++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 79 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC
Confidence 589999999999999999999877764 5678887666777788999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 100 YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........+++++|||++|.|++++++++.+.
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 80 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (164)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHH
Confidence 99999988888888765545689999999999998776677777777765555556789999999999999999999998
Q ss_pred hhhc
Q 029978 180 SKSK 183 (184)
Q Consensus 180 ~~~~ 183 (184)
+.++
T Consensus 160 i~~~ 163 (164)
T 1r8s_A 160 LRNQ 163 (164)
T ss_dssp C---
T ss_pred Hhhc
Confidence 8654
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-35 Score=202.66 Aligned_cols=172 Identities=30% Similarity=0.603 Sum_probs=143.3
Q ss_pred HHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCC
Q 029978 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVS 89 (184)
Q Consensus 10 ~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (184)
++++++.++.++|+++|++|||||||++++.++.+. ...||.+.....++...+.+.+|||||++.+...+..+++.+|
T Consensus 20 ~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp GGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred HHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 445667778999999999999999999999987765 3566777766677788899999999999999999999999999
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........+++++|||++|.|+
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999888888876654568999999999999877677788887776555556678999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
++++++|.+.+.+
T Consensus 179 ~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 179 YDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=193.01 Aligned_cols=166 Identities=34% Similarity=0.661 Sum_probs=144.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
++.++|+++|++|+|||||++++.++.+. ...+|.+.....+......+.+|||||++.+...+..+++.+|++++|+|
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 83 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVD 83 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEE
Confidence 56799999999999999999999987775 45677777776777778999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|++++++++
T Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (171)
T 1upt_A 84 SCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 163 (171)
T ss_dssp TTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHH
Confidence 99999999998888888766444689999999999998877777777777655555566789999999999999999999
Q ss_pred HHHhhhc
Q 029978 177 VKHSKSK 183 (184)
Q Consensus 177 ~~~~~~~ 183 (184)
.+.+.+.
T Consensus 164 ~~~i~~~ 170 (171)
T 1upt_A 164 VETLKSR 170 (171)
T ss_dssp HHHHHTC
T ss_pred HHHHhhc
Confidence 9988764
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=197.01 Aligned_cols=162 Identities=32% Similarity=0.572 Sum_probs=135.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|++|||||||++++.++.+. .+.+|.+.....+...++.+.+|||||++.+...+..+++.+|++++|+|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 99 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 99 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEE
Confidence 56789999999999999999999987764 46678777777777778999999999999998888899999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC-------cCCCceeEEEeeeCCCCCH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS-------ITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~v 169 (184)
+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++... .....+++++|||++|.|+
T Consensus 100 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 179 (190)
T 1m2o_B 100 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY 179 (190)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSH
T ss_pred CCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCH
Confidence 999999999998888887654456899999999999987666677777665432 2234568999999999999
Q ss_pred HHHHHHHHHH
Q 029978 170 DTVIDWLVKH 179 (184)
Q Consensus 170 ~~l~~~i~~~ 179 (184)
+++++++.+.
T Consensus 180 ~~l~~~l~~~ 189 (190)
T 1m2o_B 180 LEAFQWLSQY 189 (190)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999999865
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=200.52 Aligned_cols=167 Identities=28% Similarity=0.589 Sum_probs=142.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCC-CCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSE-DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.....+|+++|++|||||||++++.++.+.. .+.+|.+.....++...+.+.+|||||++.+...+..+++.+|++++|
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 93 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFV 93 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 3457999999999999999999999998888 788999988888888999999999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCC-------CCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc-CCCceeEEEeeeCCC
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSL-------NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNS 166 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~ 166 (184)
+|+++.+++.....|+..+...... .++|+++|+||+|+......+++.+.++.... ....+++++|||++|
T Consensus 94 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 173 (199)
T 4bas_A 94 VDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKG 173 (199)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTT
T ss_pred EECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCc
Confidence 9999999999998888887654211 37999999999999888777777777765433 345678999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.||++++++|.+.+.+
T Consensus 174 ~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 174 TGVHEGFSWLQETASR 189 (199)
T ss_dssp BTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=194.74 Aligned_cols=162 Identities=27% Similarity=0.517 Sum_probs=139.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|++|+|||||++++.++.+ ..+.+|.+.....+...+..+.+|||||++.+...+..+++.+|++++|+|
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 97 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 97 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 4569999999999999999999998877 566777777777777778999999999999999889999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++.+++.....++..+.......++|+++|+||+|+.+....+++.+.++........++++++||++|.|+++++++|
T Consensus 98 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 98 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 99999999999988888765444689999999999998766677777777655445556789999999999999999999
Q ss_pred HHH
Q 029978 177 VKH 179 (184)
Q Consensus 177 ~~~ 179 (184)
.+.
T Consensus 178 ~~~ 180 (181)
T 2h17_A 178 MSR 180 (181)
T ss_dssp HTC
T ss_pred Hhh
Confidence 864
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=196.98 Aligned_cols=164 Identities=33% Similarity=0.617 Sum_probs=129.8
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..+.++|+++|++|||||||++++.++.+. .+.+|.+.....+...++.+.+|||||++.+...+..+++.+|++++|+
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 356789999999999999999999987764 4667777666667777799999999999999888889999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC------------cCCCceeEEEeee
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS------------ITDREVCCYMISC 163 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa 163 (184)
|+++++++.....|+..+.......++|+++|+||+|+......+++.+.++... .....+++++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999988887664446899999999999987666677766655322 1124568999999
Q ss_pred CCCCCHHHHHHHHHHHh
Q 029978 164 KNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~ 180 (184)
++|.|++++++++.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998764
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=194.48 Aligned_cols=167 Identities=28% Similarity=0.605 Sum_probs=139.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC-CCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+.++|+++|++|+|||||++++.+.. +...+.+|.+.....+...+..+.+|||||++.+...+..+++.+|++++|+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVI 98 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 457999999999999999999999877 5677788888777777777789999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCC--CCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSL--NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++.+++.....++..+...... .++|+++|+||+|+.+....+++.+.+.........++++++||++|.|+++++
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 178 (190)
T 2h57_A 99 DSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGV 178 (190)
T ss_dssp ETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHH
Confidence 999988899888888888766444 689999999999998776667777666544333446789999999999999999
Q ss_pred HHHHHHhhhc
Q 029978 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~~~~~ 183 (184)
++|.+.+.+.
T Consensus 179 ~~l~~~i~~~ 188 (190)
T 2h57_A 179 DWLQDQIQTV 188 (190)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHh
Confidence 9999987653
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=205.69 Aligned_cols=166 Identities=30% Similarity=0.633 Sum_probs=142.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
++.++|+++|++|+|||||++++.++.+... .+|.+.....++...+.+.+|||||++.+...+..+++.+|++++|||
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 4568999999999999999999998776544 368888888888889999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++.+++.....++..+.......++|+++|+||+|+.+....+++...++........++++++||++|.||+++++.|
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999888776655789999999999999887888888888887777778899999999999999999999
Q ss_pred HHHhhhc
Q 029978 177 VKHSKSK 183 (184)
Q Consensus 177 ~~~~~~~ 183 (184)
.+.+.+.
T Consensus 322 ~~~l~~~ 328 (329)
T 3o47_A 322 SNQLRNQ 328 (329)
T ss_dssp HHHHTC-
T ss_pred HHHHHhc
Confidence 9988754
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-33 Score=194.01 Aligned_cols=167 Identities=18% Similarity=0.237 Sum_probs=127.1
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCC
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAV 88 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (184)
+..+..+.++|+++|.+|+|||||++++.++.+...+.+|.+..... .+...+.+.+|||||++.+...+..+++.+
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 34455678999999999999999999999999888888887754432 335668899999999999988889999999
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
|++++|+|+++++++..+..|+..+.......++|+++|+||+|+.+... .++..+... ...++++++||++|
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~ 171 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE-----SWGATFMESSAREN 171 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECCTTCH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH-----HhCCeEEEEeCCCC
Confidence 99999999999999999999988888776667899999999999975432 122211111 11247999999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q 029978 167 TNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~~ 183 (184)
.|++++++.|.+.+.+.
T Consensus 172 ~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 172 QLTQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999987653
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-32 Score=189.26 Aligned_cols=162 Identities=19% Similarity=0.238 Sum_probs=129.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.++|+++|++|+|||||++++.++.+...+.+|.+..... .+...+.+.+|||||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 3457999999999999999999999988888888887754432 2233467888999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeC-CCCCH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCK-NSTNI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v 169 (184)
+|+|+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++..+.... ..++++++||+ ++.|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK-----YNIPYIETSAKDPPLNV 169 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH-----HTCCEEEEBCSSSCBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHH-----hCCeEEEeccCCCCCCH
Confidence 999999999999888888877665445789999999999997532 22222221111 12469999999 99999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++++.+.+.+.+
T Consensus 170 ~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 170 DKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998765
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=185.36 Aligned_cols=159 Identities=18% Similarity=0.275 Sum_probs=123.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEee--CCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+.+||+++|++|||||||++++.++.+...+.+|.+.....+.. ..+.+.+|||+|++.+. +++.+|++++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~ 91 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVF 91 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEE
Confidence 3567999999999999999999999999888887775533333333 34788899999998866 6678999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc----CCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA----LSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
|||+++++++..+..|+..+.......++|+++|+||+|+... ...++..+.... ...+++++|||++|.||
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD----LKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH----TTTCEEEEEBTTTTBTH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH----cCCCeEEEecCCCCCCH
Confidence 9999999999998888888877654468999999999998421 222222222111 01247999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 029978 170 DTVIDWLVKHSKSK 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
+++|+++.+.+.+.
T Consensus 168 ~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 168 ERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-32 Score=186.15 Aligned_cols=159 Identities=24% Similarity=0.385 Sum_probs=125.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+.... .. +...+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 3589999999999999999999999888777787775442 22 2344689999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-----CHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-----SKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..+.. ....++++++||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLA-----EEKGLLFFETSAKTGEN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH-----HHHTCEEEECCTTTCTT
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 999999988888888877776543 3679999999999997542 111111111 11134799999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029978 169 IDTVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~~~~ 182 (184)
++++++++.+.+.+
T Consensus 156 i~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 156 VNDVFLGIGEKIPL 169 (170)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987754
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-32 Score=188.72 Aligned_cols=162 Identities=18% Similarity=0.261 Sum_probs=128.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE-Ee--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+..... .. ...+.+.+|||||++.+...+..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 467999999999999999999999888888888887755432 22 333788999999999998888899999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+.......++|+++|+||+|+.+... .++..+.... ..++++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES-----WNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH-----TTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH-----hCCcEEEEecCCCCCHHH
Confidence 999999999999988888887666667899999999999865422 2222222111 133699999999999999
Q ss_pred HHHHHHHHhhhc
Q 029978 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+++.+.+.+.+.
T Consensus 159 l~~~l~~~~~~~ 170 (181)
T 3t5g_A 159 VFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-32 Score=185.34 Aligned_cols=160 Identities=20% Similarity=0.282 Sum_probs=127.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+..... .+...+.+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999988888887877654432 334467899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++.....|+..+.......+.|+++|+||+|+.+... .++..+.... ....+++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ----WCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----TTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH----ccCCcEEEecCCCCCCHHHH
Confidence 99999988888888877776544446899999999999976432 2222222111 12457999999999999999
Q ss_pred HHHHHHHhh
Q 029978 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
++++.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-32 Score=182.91 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=105.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee---eEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.++|+++|++|+|||||++++.+.... ...++.+... ..++...+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 579999999999999999999865543 2233333222 223445578999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++.....|+..+.......++|+++|+||+|+.+... .++...... ...++++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----VFDCKFIETSAALHHNVQALF 155 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH-----HTTCEEEECBGGGTBSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH-----HhCCcEEEeccCCCCCHHHHH
Confidence 9999999999999988887766667899999999999975432 222211111 122479999999999999999
Q ss_pred HHHHHHhhhcC
Q 029978 174 DWLVKHSKSKS 184 (184)
Q Consensus 174 ~~i~~~~~~~~ 184 (184)
+.+.+.+.+.+
T Consensus 156 ~~l~~~~~~~r 166 (166)
T 3q72_A 156 EGVVRQIRLRR 166 (166)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999887653
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-32 Score=187.24 Aligned_cols=163 Identities=21% Similarity=0.322 Sum_probs=130.1
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE-EeeC--CEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
+..+.++|+++|++|+|||||++++.++.+...+.+|.+..+.. +... .+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 34567999999999999999999999998888888887755432 2233 46899999999999988889999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++.+++..+..|+..+.......++|+++|+||+|+.+... .++... +. ....++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA-FG----ASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH-HH----HHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-HH----HHcCCeEEEecCCCCCCH
Confidence 99999999989988888888775544446899999999999976432 222222 11 112347999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
++++++|.+.+.+
T Consensus 160 ~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 160 DEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-32 Score=184.20 Aligned_cols=160 Identities=21% Similarity=0.328 Sum_probs=125.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+..... .+...+.+.+|||||++.+...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 56899999999999999999999988877777777654432 223346899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++.....|+..+.......++|+++|+||+|+.+.. ..++..+... ...++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHHH
Confidence 9999999988888888777665544689999999999997542 2233322221 11246999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
++++.+.+.+
T Consensus 158 ~~~l~~~i~~ 167 (168)
T 1u8z_A 158 FFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-31 Score=182.94 Aligned_cols=162 Identities=17% Similarity=0.307 Sum_probs=126.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
++.++|+++|++|+|||||++++.++.+...+.+|....... .+...+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 457899999999999999999999988877777776533322 23344678899999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|+++.+++..+..|+..+.......+.|+++|+||+|+.+.....+....+... ..++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARS----YGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHH----HTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHH----cCCeEEEEeCCCCCCHHHHH
Confidence 99999999998988888888766555789999999999997543222222222111 12369999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+++.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-32 Score=184.61 Aligned_cols=160 Identities=18% Similarity=0.295 Sum_probs=126.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+...+.+|...... .. +.....+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999998888777777653332 22 23346799999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|++++.++..+..++..+.......+.|+++|+||+|+.+... .++..+... ...++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-----HhCCCEEEecCCCCcCHHHH
Confidence 99999888888888888777655556899999999999865422 222211111 01236999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
++++.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988764
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=181.87 Aligned_cols=160 Identities=23% Similarity=0.347 Sum_probs=127.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+.....++.+.... . .+...+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 35689999999999999999999998888777777765442 2 2233578999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++.....|+..+..... .++|+++|+||+|+.+.. ..++..+... ...++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEAQSYAD-----DNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 99999998888888888777765432 689999999999996532 2233322211 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~~~~ 169 (170)
T 1r2q_A 158 EIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHHHhh
Confidence 999999987754
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-32 Score=189.57 Aligned_cols=165 Identities=21% Similarity=0.230 Sum_probs=126.6
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCC
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAV 88 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (184)
++....+.++|+++|++|+|||||++++.++.+...+.+|.+..... ++...+.+.+|||||++. ...+..+++.+
T Consensus 21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ 99 (196)
T 2atv_A 21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWG 99 (196)
T ss_dssp ------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHC
T ss_pred hccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccC
Confidence 44455678999999999999999999999998888888887754432 233357899999999988 77788889999
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
|++++|+|+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++..+... ...++++++||++|
T Consensus 100 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g 174 (196)
T 2atv_A 100 EGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYECSACTG 174 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEECCTTTC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-----HhCCeEEEECCCcC
Confidence 9999999999998888888887777654444689999999999997642 2222222111 11347999999999
Q ss_pred C-CHHHHHHHHHHHhhh
Q 029978 167 T-NIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~-~v~~l~~~i~~~~~~ 182 (184)
. |++++++++.+.+.+
T Consensus 175 ~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 175 EGNITEIFYELCREVRR 191 (196)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 9 999999999988764
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-32 Score=188.92 Aligned_cols=160 Identities=25% Similarity=0.352 Sum_probs=126.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEee--CCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||++++.++.+...+.+|.+.+.. .+.. ..+.+.+|||||++.+...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 34699999999999999999999999888888888775543 2333 3478999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++.+++..+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ...++++++||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999988888888877665432 35799999999999975322 222222111 112469999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 178 ~l~~~l~~~i~~ 189 (201)
T 2ew1_A 178 KLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-32 Score=184.43 Aligned_cols=161 Identities=17% Similarity=0.182 Sum_probs=112.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccc--eeeE--EeeCCEEEEEEeCCCcccchH-hHHHhccCCCEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGF--NMRK--VTKGNVTIKLWDLGGQPRFRS-MWERYCRAVSAIVY 93 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~--~~~~--~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~ 93 (184)
.++|+++|++|+|||||++++.+..+.....++... .... .+...+.+.+|||||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 479999999999999999999876655444333332 2222 233357899999999988765 66677888999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++..+... ...++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH-----HcCCcEEEecCccCCCHHH
Confidence 99999999999999998888766555689999999999997432 2222222111 1134799999999999999
Q ss_pred HHHHHHHHhhhcC
Q 029978 172 VIDWLVKHSKSKS 184 (184)
Q Consensus 172 l~~~i~~~~~~~~ 184 (184)
+++.+.+.+...|
T Consensus 157 l~~~l~~~i~~~r 169 (169)
T 3q85_A 157 LFEGAVRQIRLRR 169 (169)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987654
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=179.73 Aligned_cols=162 Identities=23% Similarity=0.371 Sum_probs=129.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeC-----------CEEEEEEeCCCcccchHhH
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKG-----------NVTIKLWDLGGQPRFRSMW 81 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~-----------~~~~~~~D~~g~~~~~~~~ 81 (184)
.++.++|+++|++|+|||||++++.++.+...+.+|.+..+. .+... .+.+.+|||||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 455799999999999999999999998888888888876554 22222 4789999999999999999
Q ss_pred HHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEE
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCY 159 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
..+++.+|++++|+|++++.++..+..|+..+.......++|+++|+||+|+.+.. ..++..+.... ..++++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~ 162 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK-----YGIPYF 162 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----HTCCEE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----cCCCEE
Confidence 99999999999999999998888888888777665444689999999999997632 22222221110 123699
Q ss_pred EeeeCCCCCHHHHHHHHHHHhhh
Q 029978 160 MISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
++||+++.|++++++.|.+.+.+
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987753
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=180.78 Aligned_cols=161 Identities=22% Similarity=0.383 Sum_probs=129.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.+..+...+.+|.+.... . ++...+.+.+|||||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 35699999999999999999999999888888888765443 2 2334578999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|++++.++..+..|+..+.......++|+++|+||+|+.+.. ..++..+... ...++++++||+++.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH-----HcCCEEEEecCCCCCCHHH
Confidence 999999988888888888888766555689999999999996532 2222222211 1234699999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+++++.+.+.+
T Consensus 168 l~~~l~~~~~~ 178 (195)
T 1x3s_A 168 AFEELVEKIIQ 178 (195)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988764
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=183.58 Aligned_cols=160 Identities=23% Similarity=0.343 Sum_probs=128.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||++++.++.+...+.+|.+..... ++...+.+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 457999999999999999999999998887788887755432 2335678999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++.+++..+..|+..+.... ..++|+++|+||+|+.+.. ..++..+... ...++++++||+++.|++
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAE-----SIGAIVVETSAKNAINIE 174 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----TTTCEEEECBTTTTBSHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCcCHH
Confidence 9999999999988888877765432 3579999999999997532 2333333221 123579999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++.|.+.+.+
T Consensus 175 ~l~~~l~~~i~~ 186 (192)
T 2fg5_A 175 ELFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=185.95 Aligned_cols=160 Identities=24% Similarity=0.374 Sum_probs=120.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eEEeeC--CEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||++++.++.+...+.+|.+... ..+... .+.+.+|||||++++...+..+++.+|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 4459999999999999999999999988888888876443 333333 378999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCce-eEEEeeeCCCCCH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREV-CCYMISCKNSTNI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 169 (184)
+|+|+++++++..+..|+..+.... ..++|+++|+||+|+.+.. ..++..+.... ..+ +++++||++|.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH-----YDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHH-----cCCCEEEEEeCCCCCCH
Confidence 9999999888888888877776543 3679999999999997632 22333222211 123 6999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
++++++|.+.+.+
T Consensus 181 ~~l~~~l~~~i~~ 193 (201)
T 2hup_A 181 EEAFLRVATELIM 193 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=181.29 Aligned_cols=160 Identities=21% Similarity=0.339 Sum_probs=126.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+...+.++.+.... ... .....+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45699999999999999999999999888887888775443 222 33478999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++.....|+..+... .....|+++|+||+|+.+... .++...... ...++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCcCHH
Confidence 999999988888887777666543 336899999999999976422 222222111 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++.|.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999987754
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=178.36 Aligned_cols=163 Identities=23% Similarity=0.373 Sum_probs=125.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeC--CEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+.....+|.+.... .+... .+.+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 45689999999999999999999998888888888775543 23333 378999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcC---CCCCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSK---PSLNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|+++..++..+..|+..+... ....++|+++|+||+|+.+.. ..++..+.... ....+++++||++|.|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----NGDYPYFETSAKDATN 160 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----TTCCCEEECCTTTCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh----cCCceEEEEeCCCCCC
Confidence 999999988888887777665432 223678999999999997432 23333332221 1234699999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029978 169 IDTVIDWLVKHSKSK 183 (184)
Q Consensus 169 v~~l~~~i~~~~~~~ 183 (184)
++++++.+.+.+.+.
T Consensus 161 i~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 161 VAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987653
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=182.43 Aligned_cols=160 Identities=23% Similarity=0.330 Sum_probs=126.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...++|+++|++|+|||||++++.++.+.....+|.+.... .+ +...+.+.+|||||++.+...+..+++.+|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 45699999999999999999999998888777777764443 22 233578999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++..++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..+... ...++++++||++|.|++
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 90 IVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQ-----ENGLFFMETSAKTATNVK 163 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCSSSCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHH
Confidence 9999999888888888877776543 2589999999999996542 2233322221 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
+++++|.+.+.+
T Consensus 164 ~l~~~l~~~~~~ 175 (181)
T 2efe_B 164 EIFYEIARRLPR 175 (181)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=182.00 Aligned_cols=161 Identities=19% Similarity=0.278 Sum_probs=126.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
..+.++|+++|++|+|||||++++.++.+...+.+|.+.... .+. ...+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 345799999999999999999999998888777777764432 222 3347899999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++..++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..+.... ..++++++||++|.|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-----NGLLFLEASAKTGENV 165 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHH-----cCCEEEEEeCCCCCCH
Confidence 99999999888888887777665432 2579999999999996532 22233222211 2347999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++++++.+.+.+
T Consensus 166 ~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 166 EDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=186.40 Aligned_cols=158 Identities=16% Similarity=0.268 Sum_probs=124.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+..+.. .+...+.+.+|||||++.+...+..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 456999999999999999999999999888888888755543 22345678999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCc----CCHhHH---HHHcCCCCcCCCceeEEEeeeCC
Q 029978 94 VVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEA----LSKEDL---MEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 94 v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
|+|+++++++..+.. |...+... ..++|+++|+||+|+.+. ...++. .+..+. ..++++||++
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~ 171 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC-------VAYIEASSVA 171 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC-------SCEEECBTTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC-------CEEEEeecCC
Confidence 999999998888744 44444322 257999999999999753 222222 222221 1399999999
Q ss_pred CCCHHHHHHHHHHHhhhc
Q 029978 166 STNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~~~ 183 (184)
|.|++++++.+.+.+.+.
T Consensus 172 ~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp TBSHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999987654
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=186.07 Aligned_cols=163 Identities=21% Similarity=0.307 Sum_probs=130.2
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
...+.++|+++|++|||||||++++.++.+...+.+|.+.... .+. ...+.+.+|||||++.+...+..+++.+|++
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 3456799999999999999999999998888777777765442 222 2346899999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++.+++..+..|+..+.......++|+++|+||+|+.+.. ..++..+... ...++++++||++|.|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRANV 164 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-----HhCCeEEEEeCCCCCCH
Confidence 9999999999998988888887766555689999999999997642 2233322221 11246999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
++++++|.+.+.+
T Consensus 165 ~~l~~~l~~~i~~ 177 (206)
T 2bov_A 165 DKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=187.29 Aligned_cols=163 Identities=18% Similarity=0.194 Sum_probs=119.9
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccce--eeE--EeeCCEEEEEEeCCCcccchH-hHHHhccCCCE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN--MRK--VTKGNVTIKLWDLGGQPRFRS-MWERYCRAVSA 90 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~--~~~--~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~ 90 (184)
....++|+++|++|||||||++++.+........++.... ... ++...+.+.+|||+|++.+.. .+..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 3456999999999999999999997543332222333322 222 333457899999999987764 67778899999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|||++++++|..+..|+..+.......++|+++|+||+|+.+.. ..++..+.... ..++++++||++|.|
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~-----~~~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-----LSCKHIETSAALHHN 174 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH-----TTCEEEEEBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHH-----hCCEEEEEcCCCCCC
Confidence 99999999999999998888887654444579999999999997542 22232221111 124699999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029978 169 IDTVIDWLVKHSKSK 183 (184)
Q Consensus 169 v~~l~~~i~~~~~~~ 183 (184)
++++|+.+.+.+.+.
T Consensus 175 v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 175 TRELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=185.70 Aligned_cols=161 Identities=27% Similarity=0.442 Sum_probs=124.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeC--CEEEEEEeCCCcccch-HhHHHhccCCCEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFR-SMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~ 91 (184)
.+.++|+++|++|+|||||++++.++.+.....+|.+.... .+... .+.+.+|||||++.+. ..+..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 45699999999999999999999998888777777764443 23333 4789999999999988 7888999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCC---
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNS--- 166 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--- 166 (184)
++|+|+++..++..+..|+..+.......++|+++|+||+|+.+... .++..+... ...++++++||+++
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~~ 172 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMPLFETSAKNPNDN 172 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEECCSSSGGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH-----HcCCEEEEEeCCcCCcc
Confidence 99999999988888888888877665557899999999999975422 222221111 11236999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.|++++++.|.+.+.+
T Consensus 173 ~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 173 DHVEAIFMTLAHKLKS 188 (189)
T ss_dssp SCHHHHHHHHC-----
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999887654
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-31 Score=182.72 Aligned_cols=157 Identities=24% Similarity=0.417 Sum_probs=127.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeCC--EEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|+|||||++++.++.+...+.++.+.... .+...+ +.+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 34689999999999999999999999888887777764443 333333 78999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH--h---HHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|+++.+++..+..|+..+.... ..++|+++|+||+|+.+.... + +..+.. .++++++||++|.
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~g~ 164 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNAT 164 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT--------TCCEEEECTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHHc--------CCcEEEEeCCCCC
Confidence 9999999988888888777665443 258999999999999765321 2 222222 2369999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
|++++++++.+.+.+
T Consensus 165 gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 165 NVEQSFMTMAAEIKK 179 (196)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=182.31 Aligned_cols=160 Identities=19% Similarity=0.150 Sum_probs=112.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eE--EeeCCEEEEEEeCCCccc--chHhHHHhccCCCE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RK--VTKGNVTIKLWDLGGQPR--FRSMWERYCRAVSA 90 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~--~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~~~ 90 (184)
++.++|+++|++|+|||||++++.+..+..... +.+... .. ++...+.+.+|||||++. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 457899999999999999999999877654332 333222 22 333346899999999987 56677788899999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|+++++++..+..|+..+.......++|+++|+||+|+.+... .++...... ...++++++||++|.|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~g 155 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-----VFDCKFIETSATLQHN 155 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HHTSEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-----HcCCeEEEEecCCCCC
Confidence 999999999999998888887776654456899999999999976422 222211110 1124799999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029978 169 IDTVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~~~~ 182 (184)
+++++++|.+.+.+
T Consensus 156 i~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 156 VAELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=182.83 Aligned_cols=160 Identities=26% Similarity=0.336 Sum_probs=120.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||++++.++.+.....+|.+.... .+ +...+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999998888777788775543 22 334578999999999999888889999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++.+++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+... ...++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHH
Confidence 9999999888888887776654322 2478999999999997642 2223222211 112479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-31 Score=184.98 Aligned_cols=175 Identities=19% Similarity=0.257 Sum_probs=121.6
Q ss_pred HHHHHHHHHhhcc-CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchH
Q 029978 4 WEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
...+..++++... .+.++|+++|++|+|||||++++.++.+...+.+|...... ..+...+.+.+|||||++.+..
T Consensus 14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 93 (204)
T 4gzl_A 14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR 93 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTT
T ss_pred cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHH
Confidence 4556667766444 56799999999999999999999998888777777754332 2344557888999999999999
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcC------
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT------ 152 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~------ 152 (184)
.+..+++.+|++++|+|++++.++.... .|+..+.... .++|+++|+||+|+.+.....+...........
T Consensus 94 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 4gzl_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHH
Confidence 9999999999999999999999988887 4444444332 579999999999997653222222221111100
Q ss_pred ----CCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 153 ----DREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 153 ----~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
....+++++||++|.|++++++++.+.+
T Consensus 172 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1123699999999999999999998764
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=184.26 Aligned_cols=161 Identities=22% Similarity=0.323 Sum_probs=129.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE-Ee--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|....... +. ...+.+.+|||||++.+...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 457999999999999999999999988887777777654432 22 333689999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++.+++.....|+..+.......++|+++|+||+|+.+.. ..++..+... ...++++++||+++.|+++
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHH
Confidence 99999998888888888777665554689999999999997642 2233333221 1234799999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
++++|.+.+.+
T Consensus 171 l~~~l~~~i~~ 181 (187)
T 2a9k_A 171 VFFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=182.87 Aligned_cols=162 Identities=25% Similarity=0.430 Sum_probs=118.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCC-CCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYS-EDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~-~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
.++.++|+++|++|+|||||++++.++.+. ..+.+|.+..+.. .+...+.+.+|||||++.+...+..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 356799999999999999999999988875 4566776655432 22334689999999999999889999999999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|++++.++..+..|+..+..... .++|+++|+||+|+.+... .++..+... ...++++++||+++.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEeCCCCCC
Confidence 9999999998888888877776655432 6799999999999976432 222222111 0123699999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029978 169 IDTVIDWLVKHSKSK 183 (184)
Q Consensus 169 v~~l~~~i~~~~~~~ 183 (184)
++++++++.+.+.+.
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887653
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-31 Score=182.57 Aligned_cols=160 Identities=23% Similarity=0.355 Sum_probs=127.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||++++.+..+.....+|.+..... +....+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 345999999999999999999999988887777777654432 2234578999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++...... ...++++++||++|.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAE-----NNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999888888888877776543 3689999999999997642 2222222211 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++.|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (193)
T 2oil_A 177 LAFETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=182.35 Aligned_cols=161 Identities=20% Similarity=0.313 Sum_probs=123.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+..+.. .+...+.+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999988877777777654432 223346899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCccCcCCH--hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKP-SLNGIPLLVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+++++++.....++..+.... ...+.|+++|+||+|+.+.... .+... +. ....++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-LA----RTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-HH----HHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHH-HH----HHhCCeEEEecCCCCcCHHH
Confidence 99999888877777766654421 2257899999999999754321 12111 11 01134799999999999999
Q ss_pred HHHHHHHHhhhc
Q 029978 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+++++.+.+.+.
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987653
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-31 Score=181.01 Aligned_cols=160 Identities=20% Similarity=0.297 Sum_probs=126.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeCC--EEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|||||||++++.++.+.....+|.+.... .+.... +.+.+|||||++.+...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45699999999999999999999998888877777764432 233333 78999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ...++++++||++|.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQ-----ENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEecCCCCCCHH
Confidence 9999999888888887776665432 26799999999999965322 222222211 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++.+.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=187.13 Aligned_cols=166 Identities=20% Similarity=0.354 Sum_probs=115.4
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--EeeCCEEEEEEeCCCcccchHhHHHhccC
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRA 87 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 87 (184)
.+...++.++|+++|++|+|||||++++.++.+...+.+|.+.... . ++...+.+.+|||||++.+...+..+++.
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 3445566799999999999999999999998887777777664432 2 33344789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--------CCHhHHHHHcCCCCcCCCceeEE
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--------LSKEDLMEQMGLKSITDREVCCY 159 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
+|++++|+|+++..++..+..|+..+... ...++|+++|+||+|+.+. ...++..+ +. ....++++
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~-~~----~~~~~~~~ 174 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK-LA----MTYGALFC 174 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH-HH----HHHTCEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHH-HH----HHcCCeEE
Confidence 99999999999988888888776665433 2257899999999999631 11111111 11 01134799
Q ss_pred EeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 160 MISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
++||++|.|++++++++.+.+.++
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHTC-
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999988653
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=183.29 Aligned_cols=160 Identities=20% Similarity=0.255 Sum_probs=125.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
....++|+++|++|||||||++++.++.+...+.+|.+..+. .++...+.+.+|||+|++.+...+..+++.+|+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 345799999999999999999999999998888888876554 23455689999999999999999999999999999
Q ss_pred EEEeCCCCCChHH-HHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--------------CCHhHHHHHcCCCCcCCCce-
Q 029978 93 YVVDAADYDNLPV-SRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--------------LSKEDLMEQMGLKSITDREV- 156 (184)
Q Consensus 93 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~- 156 (184)
+|||+++++++.. ...|+..+.... .+.|+++|+||+|+.+. ...++..+... ...+
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~ 176 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK-----QLGAE 176 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH-----HHTCS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH-----HcCCC
Confidence 9999999999988 456666665432 58999999999999753 12222211111 1123
Q ss_pred eEEEeeeCCCCC-HHHHHHHHHHHhhh
Q 029978 157 CCYMISCKNSTN-IDTVIDWLVKHSKS 182 (184)
Q Consensus 157 ~~~~~Sa~~~~~-v~~l~~~i~~~~~~ 182 (184)
++++|||++|.| |+++|+.+.+.+.+
T Consensus 177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 177 IYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 699999999998 99999999988764
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=177.96 Aligned_cols=160 Identities=24% Similarity=0.371 Sum_probs=119.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..++|+++|++|+|||||++++.++.+...+.+|.+.... .+. ...+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 4689999999999999999999998887777777764443 233 335789999999999998888899999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ...++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHH
Confidence 999999888888877777665543 25789999999999954322 222221111 01236999999999999999
Q ss_pred HHHHHHHhhhc
Q 029978 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
++.+.+.+.++
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999887653
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=183.39 Aligned_cols=160 Identities=22% Similarity=0.366 Sum_probs=125.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEee--CCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+.... .+.. ..+.+.+|||||++.+...+..+++.+|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4599999999999999999999998888887777775443 2333 33689999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|++++.++.....|+..+.... ..++|+++|+||+|+.+... .++...... ...++++++||++|.|+++
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-----ELNVMFIETSAKAGYNVKQ 166 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEEEBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Confidence 999999888888888877765432 25799999999999975432 222222211 1134799999999999999
Q ss_pred HHHHHHHHhhhc
Q 029978 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+++.|.+.+.+.
T Consensus 167 l~~~l~~~~~~~ 178 (179)
T 2y8e_A 167 LFRRVAAALPGM 178 (179)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHhhc
Confidence 999999987654
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=186.85 Aligned_cols=157 Identities=22% Similarity=0.392 Sum_probs=126.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..+||+++|++|+|||||++++.++.+.....+|.+.... ..+...+.+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 34599999999999999999999998887777776664333 23446789999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhH---HHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KED---LMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+... .++ ..+.. .++++++||++|.
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL--------GFDFFEASAKENI 171 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHc--------CCeEEEEECCCCC
Confidence 999999999998888877776553 236899999999999965422 222 22222 2369999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
|++++++.+.+.+.+
T Consensus 172 gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 172 SVRQAFERLVDAICD 186 (191)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=185.06 Aligned_cols=160 Identities=19% Similarity=0.272 Sum_probs=121.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEee--CCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+.....+|.+.... .+.. ..+.+.+|||||++.+...+..+++.+|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 34699999999999999999999998887777776664432 3333 3478999999999999888899999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++.+++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+... ...++++++||++|.|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999888888888877775432 2579999999999997532 2222222111 112479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
+++++|.+.+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (191)
T 2a5j_A 173 EAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=180.86 Aligned_cols=159 Identities=22% Similarity=0.394 Sum_probs=125.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--Ee--eCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+..... +. ...+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 457899999999999999999999998888888887654432 22 23578999999999998888889999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++.....|+..+.... .+.|+++|+||+|+.+.. ..++..+... ...++++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Confidence 9999999888888877777665433 578999999999997532 2222222111 112479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T 1z2a_A 156 EVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-31 Score=181.70 Aligned_cols=160 Identities=24% Similarity=0.452 Sum_probs=124.5
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeCC--EEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
.++.++|+++|++|+|||||++++.++.+...+.++.+.... .+...+ +.+.+|||||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 356799999999999999999999988888777777764443 344444 7899999999999998889999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+... .++...... ...++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAG-----QMGIQLFETSAKENVNV 158 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHH-----HcCCeEEEEECCCCCCH
Confidence 99999999999988888877775532 4799999999999876432 122221111 11236999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++++++.+.+.+
T Consensus 159 ~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 159 EEMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=184.61 Aligned_cols=157 Identities=22% Similarity=0.414 Sum_probs=125.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+.... .+ +...+.+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 44699999999999999999999999888777777765443 22 233578999999999999888899999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--Hh---HHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|+++.+++..+..|+..+.... ..+.|+++|+||+|+.+... .+ ++.+.. .++++++||++|.
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~g~ 170 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDL--------GFEFFEASAKENI 170 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECBTTTTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHc--------CCeEEEEECCCCC
Confidence 9999999888888888777665432 35799999999999976422 22 222222 2369999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
|+++++++|.+.+.+
T Consensus 171 gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 171 NVKQVFERLVDVICE 185 (189)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-31 Score=187.58 Aligned_cols=161 Identities=20% Similarity=0.362 Sum_probs=126.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeC----------CEEEEEEeCCCcccchHhHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKG----------NVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~----------~~~~~~~D~~g~~~~~~~~~ 82 (184)
++.++|+++|++|+|||||++++.++.+...+.+|.+..+.. ++.. .+.+.+|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 456999999999999999999999888877777776644322 2222 57899999999999999999
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEE
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
.+++.+|++++|+|+++..++..+..|+..+.......++|+++|+||+|+.+... .++..+.... ..+++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK-----YGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH-----CCCcEEE
Confidence 99999999999999999888888887777766554446899999999999976422 2222221111 1246999
Q ss_pred eeeCCCCCHHHHHHHHHHHhhh
Q 029978 161 ISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+||+++.|+++++++|.+.+.+
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987654
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-31 Score=184.12 Aligned_cols=157 Identities=19% Similarity=0.392 Sum_probs=126.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+.... .+. ...+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 45699999999999999999999998888777777764443 222 33578999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--Hh---HHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... .+ ++.+.. .++++++||++|.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~ 156 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHL--------GFEFFEASAKDNI 156 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH--------TCEEEECBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHHC--------CCeEEEEECCCCC
Confidence 9999999888888888777765432 35789999999999976422 22 222222 2369999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
|+++++++|.+.+.+
T Consensus 157 gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 157 NVKQTFERLVDVICE 171 (203)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987653
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-30 Score=178.98 Aligned_cols=158 Identities=19% Similarity=0.236 Sum_probs=122.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCC-----------CCCccceee-----EEeeCCEEEEEEeCCCcccchHh
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDM-----------IPTVGFNMR-----KVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~-----------~~t~~~~~~-----~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
...++|+++|++|||||||++.+. +.+...+ .+|.+..+. ..+...+.+.+|||||++.+...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 456999999999999999997665 4444442 334443332 22344578999999999999999
Q ss_pred HHHhccCCCEEEEEEeCC------CCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCC
Q 029978 81 WERYCRAVSAIVYVVDAA------DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 154 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
+..+++.+|++++|+|++ +.+++..+..|+..+. ....++|+++|+||+|+.+....++..+.....
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~----- 163 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE----- 163 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTT-----
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHhc-----
Confidence 999999999999999999 4456666666666652 234689999999999998876666666655432
Q ss_pred ce-eEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 155 EV-CCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~-~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
.+ +++++||++|.|++++++++.+.+.+
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 23 69999999999999999999988764
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=179.18 Aligned_cols=157 Identities=17% Similarity=0.251 Sum_probs=116.8
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.++|+++|++|||||||++++.++.+.. +.+|.+..+.. ++...+.+.+|||||++. ..+++.+|+++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 3567999999999999999999999988876 66776644322 223347899999999987 45678899999
Q ss_pred EEEeCCCCCChHHHHHHHHHHh--cCCCCCCCcEEEEeeCCCccC--c--CCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLL--SKPSLNGIPLLVLGNKIDKPE--A--LSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~piilv~nK~D~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+|||+++++++..+..|+..+. ......++|+++|+||+|+.. . ...++..+.... ...++++++||++|
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~ 153 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD----MKRCSYYETXATYG 153 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH----HSSEEEEEEBTTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh----hcCCeEEEEecccc
Confidence 9999999999998887643332 222236799999999999842 1 122332221110 11357999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.|++++|+.+.+.+.+
T Consensus 154 ~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 154 LNVDRVFQEVAQKVVT 169 (178)
T ss_dssp BTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987654
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-31 Score=183.64 Aligned_cols=161 Identities=22% Similarity=0.332 Sum_probs=119.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEee--CCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...++|+++|++|+|||||++++.++.+.....+|.+.... .+.. ..+.+.+|||||++.+...+..+++.+|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988887777777764433 2333 3478999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++..++..+..|+..+... ...++|+++|+||+|+.+... .++..+.... ....+++++||++|.|++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~----~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQ----ITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT----STTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHh----cCCCeEEEEeCCCCCCHH
Confidence 999999988888887776655433 335799999999999975422 2222222111 124579999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
+++++|.+.+.+
T Consensus 179 ~l~~~l~~~i~~ 190 (192)
T 2il1_A 179 EIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=185.80 Aligned_cols=160 Identities=22% Similarity=0.290 Sum_probs=121.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|||||||++++.++.+...+.+|.+..+.. ++...+.+.+|||||++.+... ..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il 97 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV 97 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence 456999999999999999999999998888888888755422 2334578999999999987764 568899999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeee-CCCCC
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPS--LNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISC-KNSTN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~ 168 (184)
|||+++++++..+..|+..+..... ..++|+++|+||+|+.+.. ..++..+... ...+++++||| ++|.|
T Consensus 98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-----RFGCLFFEVSACLDFEH 172 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECCSSSCSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH-----HcCCcEEEEeecCcccc
Confidence 9999999999998888777754321 1478999999999996532 2222222111 11246999999 89999
Q ss_pred HHHHHHHHHHHhhh
Q 029978 169 IDTVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~~~~ 182 (184)
|+++++.+.+.+.+
T Consensus 173 v~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 173 VQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988764
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-31 Score=182.40 Aligned_cols=162 Identities=20% Similarity=0.354 Sum_probs=123.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eEEeeC---CEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RKVTKG---NVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+... ..+... .+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4679999999999999999999998888766667776433 334433 38999999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCc-EEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPS-LNGIP-LLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p-iilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++|+|+++++++..+..|+..+..... ..+.| +++|+||+|+.+.. ..++..+... ...++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-----ENGFSSHFVSAKTGD 158 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-----HcCCcEEEEeCCCCC
Confidence 999999998888888777666644210 01345 89999999997532 2222222111 112469999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 029978 168 NIDTVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~~ 183 (184)
|+++++++|.+.+.+.
T Consensus 159 gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGI 174 (178)
T ss_dssp THHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999887654
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=185.21 Aligned_cols=160 Identities=23% Similarity=0.376 Sum_probs=97.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeC--CEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+.... .+... .+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 45699999999999999999999988877777777764443 33333 388999999999999888888999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..++|+++|+||+|+.+.. ..++..+... ...++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLAL-----DYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHH-----HHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 9999999988888888777765432 2579999999999997642 2222222111 112479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++.+.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-31 Score=184.57 Aligned_cols=160 Identities=24% Similarity=0.378 Sum_probs=127.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEee--CCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+.... .+.. ..+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45699999999999999999999999888887777765443 2333 3468999999999999888899999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+... ...++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 9999999988888888777765433 3579999999999997642 2222222111 122469999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-30 Score=172.91 Aligned_cols=160 Identities=16% Similarity=0.273 Sum_probs=125.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-E--EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+.....+|...... . .+...+.+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 3579999999999999999999988887777777654332 2 223347789999999999998999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+|+++.+++.....|+..+.......+.|+++|+||+|+.+... .++..+.... ..++++++||++|.|+++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARS-----YGIPYIETSAKTRQGVEDAF 156 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-----HTCCEEEECTTTCTTHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHH-----cCCeEEEecCCCCCCHHHHH
Confidence 99999888888887777766544445799999999999876322 2222221110 12369999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+++.+.+.+
T Consensus 157 ~~l~~~~~~ 165 (166)
T 2ce2_X 157 YTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988765
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-30 Score=180.25 Aligned_cols=167 Identities=17% Similarity=0.224 Sum_probs=119.4
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE-Ee--eCCEEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
++....++|+++|++|||||||++++.++.+...+.+|.+..... +. ...+.+.+|||||++.+...+..+++.+|+
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (207)
T 2fv8_A 20 FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (207)
T ss_dssp GGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred cccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence 334567899999999999999999999988887777777654422 22 334789999999999998888899999999
Q ss_pred EEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcC---------CCc-eeEE
Q 029978 91 IVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT---------DRE-VCCY 159 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~ 159 (184)
+++|+|+++++++.... .|...+... ..++|+++|+||+|+.+.....+........... ... .+++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYL 177 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEE
Confidence 99999999988888874 444444332 1479999999999997652222222221111000 012 2799
Q ss_pred EeeeCCCCCHHHHHHHHHHHhhh
Q 029978 160 MISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
++||++|.|+++++++|.+.+.+
T Consensus 178 ~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 178 ECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHS
T ss_pred EeeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988754
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=178.61 Aligned_cols=159 Identities=19% Similarity=0.299 Sum_probs=110.9
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
...+.++|+++|++|+|||||++++.++.+...+.+|.+.... ..+...+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 3466799999999999999999999998887777777653332 2344567888999999999998889999999999
Q ss_pred EEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCC------------Hh---HHHHHcCCCCcCCCc
Q 029978 92 VYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALS------------KE---DLMEQMGLKSITDRE 155 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~------------~~---~~~~~~~~~~~~~~~ 155 (184)
++|+|+++++++..+. .|...+.... .+.|+++|+||+|+.+... .+ +..+..+ .
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 154 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG-------A 154 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT-------C
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC-------C
Confidence 9999999998888887 4555554332 3799999999999865421 11 1111211 1
Q ss_pred eeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 156 VCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
.++++|||++|.|++++++.+.+.+.+
T Consensus 155 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 155 PAYIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 369999999999999999999987754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=177.61 Aligned_cols=163 Identities=27% Similarity=0.419 Sum_probs=114.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe---eCCEEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
.++.++|+++|++|+|||||++++.++.+...+.+|.+.... .+. .....+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 356799999999999999999999998888777777764443 232 235789999999999999888999999999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcC---CCCCCCcEEEEeeCCCccCcC---CHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSK---PSLNGIPLLVLGNKIDKPEAL---SKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~piilv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+++|+|+++..++..+..|+..+... ....++|+++|+||+|+.+.. ..++..+.... ....+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS----LGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH----TTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh----cCCCeEEEEecC
Confidence 99999999998888888777666433 233678999999999995432 22222222110 123469999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 029978 165 NSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~~ 182 (184)
+|.|++++++++.+.+.+
T Consensus 161 ~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQ 178 (182)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987754
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=175.35 Aligned_cols=158 Identities=22% Similarity=0.359 Sum_probs=125.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--EeeCC-------------------------------
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGN------------------------------- 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~~~~------------------------------- 63 (184)
++.++|+++|++|+|||||++++++..+...+.+|.+..... +....
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 567999999999999999999999998888888887754432 22221
Q ss_pred --------EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 64 --------VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 64 --------~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
..+.+|||||++.+...+..+++.+|++++|+|++++.++.....|+..+.... +.|+++|+||+|...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCccc
Confidence 789999999999999999999999999999999999888888888877776542 399999999999432
Q ss_pred -cCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 136 -ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 136 -~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
....++..+.... ..++++++||++|.|+++++++|.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 162 FQVDILEVQKYAQD-----NNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CCSCHHHHHHHHHH-----TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 2223333332221 23479999999999999999999987754
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-31 Score=186.14 Aligned_cols=161 Identities=24% Similarity=0.325 Sum_probs=125.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEe--e--CC-EEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT--K--GN-VTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~--~--~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
...++|+++|++|||||||++++.++.+...+.+|.+....... . .. +.+.+|||||++.+...+..+++.+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 45799999999999999999999988888777777775544322 1 22 7899999999999988888999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++..++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+... ...++++++||++|.|+
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLK-----GKNYEYFEISAKTAHNF 162 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTT-----TCCCEEEEEBTTTTBTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCcEEEEecCCCCCH
Confidence 99999999988888887776665432 2468999999999997642 2222222221 23457999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 029978 170 DTVIDWLVKHSKSK 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
+++++.+.+.+.+.
T Consensus 163 ~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 163 GLPFLHLARIFTGR 176 (218)
T ss_dssp THHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987653
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-30 Score=177.21 Aligned_cols=164 Identities=18% Similarity=0.247 Sum_probs=123.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|...... .++...+.+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 45789999999999999999999998888777777764432 233345778899999999998888899999999999
Q ss_pred EEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC---------cCCCc-eeEEEee
Q 029978 94 VVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS---------ITDRE-VCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~S 162 (184)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+......... ..... .+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999988888887 4555554322 3799999999999975421111111111000 00112 3799999
Q ss_pred eCCCCCHHHHHHHHHHHhhh
Q 029978 163 CKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~ 182 (184)
|++|.|++++++.+.+.+.+
T Consensus 161 a~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSC
T ss_pred CCCccCHHHHHHHHHHHHhc
Confidence 99999999999999988764
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-30 Score=180.26 Aligned_cols=162 Identities=23% Similarity=0.371 Sum_probs=126.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--E--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||++++.+..+...+.+|.+..... + +...+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 567999999999999999999999998888888887654433 2 234478999999999999888888999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCC---CCCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKP---SLNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|++++.++..+..|+..+.... ...+.|+++|+||+|+.+.. ..++..+.... ...++++++||++|.|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~g 161 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS----KNNIPYFETSAKEAIN 161 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH----TTSCCEEECBTTTTBS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh----cCCceEEEEeCCCCCC
Confidence 9999999888888877776664432 12478999999999997432 22222222110 1234699999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029978 169 IDTVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~~~~ 182 (184)
+++++++|.+.+.+
T Consensus 162 i~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 162 VEQAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987753
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-30 Score=183.25 Aligned_cols=160 Identities=22% Similarity=0.314 Sum_probs=116.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eEEeeC--CEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|||||||++++.++.+...+.+|.+... ..+... .+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 4569999999999999999999998888777777766443 233333 378999999999988888889999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++.+++..+..|+..+..... .++|+++|+||+|+.+... .++..+... ...++++++||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQ-----ENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 99999999888888888777654332 6799999999999965322 223222211 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=178.09 Aligned_cols=164 Identities=18% Similarity=0.260 Sum_probs=122.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...++|+++|++|+|||||++++.++.+...+.+|.+.... .+. ...+.+.+|||||++.+...+..+++.+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 45689999999999999999999999888877777765442 222 334689999999999999888999999999999
Q ss_pred EEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc---------CCCc-eeEEEee
Q 029978 94 VVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI---------TDRE-VCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~S 162 (184)
|+|+++++++.... .|...+... . .+.|+++|+||+|+.+.....+.......... .... .+++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHF-C-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-S-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999988888884 444444332 1 47999999999999764221111111100000 0012 2699999
Q ss_pred eCCCCCHHHHHHHHHHHhhh
Q 029978 163 CKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~ 182 (184)
|++|.|++++++.|.+.+.+
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999987654
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-30 Score=183.79 Aligned_cols=158 Identities=20% Similarity=0.285 Sum_probs=123.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.++|+++|++|+|||||++++.++.+...+.+|.+..+.. ++...+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 3467999999999999999999999998888888887754432 3344579999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcC----------CHhHH---HHHcCCCCcCCCceeE
Q 029978 93 YVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEAL----------SKEDL---MEQMGLKSITDREVCC 158 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~----------~~~~~---~~~~~~~~~~~~~~~~ 158 (184)
+|+|+++++++..+. .|+..+.... .+.|+++|+||+|+.+.. ..++. .+.++ ..++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~ 156 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG-------AAAY 156 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT-------CSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC-------CceE
Confidence 999999998888886 5555554332 479999999999996541 11221 12221 1369
Q ss_pred EEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 159 YMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 159 ~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+++||++|.|++++++.+.+.+.+
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 157 IECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEccCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999988764
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=176.12 Aligned_cols=162 Identities=17% Similarity=0.282 Sum_probs=115.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|.+|||||||++++.++.+.....+|...... .+. ...+.+.+|||||++.+...+..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 35689999999999999999999988877776666654332 222 334679999999999998889999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+|+++..++..+..|+..+.......++|+++|+||+|+.+.. ..++..+.... ..++++++||+++.|++++
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS-----YGIPFIETSAKTRQGVEDA 173 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-----HTCCEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH-----cCCeEEEEeCCCCCCHHHH
Confidence 99999988888887777766554334579999999999987532 22222222110 1236999999999999999
Q ss_pred HHHHHHHhhhc
Q 029978 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
+++|.+.+.+.
T Consensus 174 ~~~l~~~~~~~ 184 (190)
T 3con_A 174 FYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-30 Score=180.81 Aligned_cols=165 Identities=21% Similarity=0.298 Sum_probs=104.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|...... .++...+.+.+|||||++.+...+..+++.+|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 45699999999999999999999988887777777764432 223344689999999999999999999999999999
Q ss_pred EEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC---------cCCCc-eeEEEee
Q 029978 94 VVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS---------ITDRE-VCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~S 162 (184)
|+|+++++++..+. .|+..+.... .++|+++|+||+|+.+.....+..+...... ..... .++++||
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 99999998888886 4555554322 5789999999999976522211111111000 00112 3799999
Q ss_pred eCCCCCHHHHHHHHHHHhhhc
Q 029978 163 CKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~~ 183 (184)
|++|.|++++++.|.+.+.+.
T Consensus 190 A~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999887653
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-29 Score=175.30 Aligned_cols=163 Identities=24% Similarity=0.320 Sum_probs=116.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeC---CEEEEEEeCCCcccchH-hHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKG---NVTIKLWDLGGQPRFRS-MWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||++++.++.+...+.++. .....+... .+.+.+|||||++.+.. .+..+++.+|+++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 457999999999999999999999988877765443 333334433 68999999999999887 7888899999999
Q ss_pred EEEeCCCCC-ChHHHHHHHHHHhcC--CCCCCCcEEEEeeCCCccCcCCHhHHHHHcC----------------------
Q 029978 93 YVVDAADYD-NLPVSRSELHDLLSK--PSLNGIPLLVLGNKIDKPEALSKEDLMEQMG---------------------- 147 (184)
Q Consensus 93 ~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---------------------- 147 (184)
+|+|+++.. ++.....++..+... ....++|+++|+||+|+......++..+.+.
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999998743 344455555544322 2335799999999999987655433332211
Q ss_pred -CCCcC---------C--CceeEEEeeeCCC------CCHHHHHHHHHHHh
Q 029978 148 -LKSIT---------D--REVCCYMISCKNS------TNIDTVIDWLVKHS 180 (184)
Q Consensus 148 -~~~~~---------~--~~~~~~~~Sa~~~------~~v~~l~~~i~~~~ 180 (184)
..... . ..+++++|||++| .||++++++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 00111 0 1678999999999 99999999998753
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-30 Score=184.14 Aligned_cols=160 Identities=20% Similarity=0.325 Sum_probs=119.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeCC--EEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+.... .+.... +.+.+|||||++.+...+..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45699999999999999999999999888777777764433 333333 78999999999999888899999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+.. ..++..+... ...++++++||+++.||+
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ-----ENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999999988888877765432 3578999999999997532 2222222211 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
+++++|.+.+.+
T Consensus 165 ~l~~~l~~~i~~ 176 (223)
T 3cpj_B 165 KAFEELINTIYQ 176 (223)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=174.10 Aligned_cols=157 Identities=18% Similarity=0.275 Sum_probs=123.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+.... .+. ...+.+.+|||||++++...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 35689999999999999999999999888888888765442 222 344889999999999999889999999999999
Q ss_pred EEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcC--------------CHhHH---HHHcCCCCcCCCc
Q 029978 94 VVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEAL--------------SKEDL---MEQMGLKSITDRE 155 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~--------------~~~~~---~~~~~~~~~~~~~ 155 (184)
|+|+++++++.... .|+..+.... .++|+++|+||+|+.+.. ..++. .+..+ .
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 166 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG-------A 166 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT-------C
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC-------C
Confidence 99999998888887 5555554432 479999999999997641 11111 11111 1
Q ss_pred eeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 156 VCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
.+++++||++|.|++++++++.+.+..
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 269999999999999999999987653
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-30 Score=178.14 Aligned_cols=162 Identities=19% Similarity=0.281 Sum_probs=125.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...++|+++|++|||||||++++.++.+...+.+|.+..+.. .+...+.+.+|||||++.+...+..+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 457999999999999999999999988887777777654432 22334689999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++.....++..+..... ..+.|+++|+||+|+.+... .++...... ...++++++||++|.|+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-----EWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Confidence 9999998888877776655543211 24789999999999976322 222222111 1124699999999999999
Q ss_pred HHHHHHHHhhhc
Q 029978 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
++++|.+.+.+.
T Consensus 161 l~~~l~~~~~~~ 172 (199)
T 2gf0_A 161 LFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHCSSS
T ss_pred HHHHHHHHHhhh
Confidence 999999887643
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-30 Score=176.45 Aligned_cols=157 Identities=18% Similarity=0.304 Sum_probs=122.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...++|+++|++|+|||||++++.++.+...+.+|.+.... .++...+.+.+|||||++.+...+..+++.+|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 45799999999999999999999999888877888765443 223445789999999999998888899999999999
Q ss_pred EEeCCCCCChHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCccCc--------------CCHhH---HHHHcCCCCcCCCc
Q 029978 94 VVDAADYDNLPVS-RSELHDLLSKPSLNGIPLLVLGNKIDKPEA--------------LSKED---LMEQMGLKSITDRE 155 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~--------------~~~~~---~~~~~~~~~~~~~~ 155 (184)
|+|+++++++..+ ..|...+.... .+.|+++|+||+|+.+. ...++ ..+.++ .
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 155 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------A 155 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------C
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC-------C
Confidence 9999999888887 45555554322 47999999999999742 11111 111111 2
Q ss_pred eeEEEeeeC-CCCCHHHHHHHHHHHhhh
Q 029978 156 VCCYMISCK-NSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~-~~~~v~~l~~~i~~~~~~ 182 (184)
+++++|||+ ++.|++++|+.+.+.+.+
T Consensus 156 ~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 156 ATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp SEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred cEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 479999999 689999999999988764
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=177.91 Aligned_cols=159 Identities=25% Similarity=0.431 Sum_probs=124.1
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeCC--EEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
.....++|+++|++|+|||||++++.+..+...+.+|.+.... .+.... +.+.+|||||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 3456799999999999999999999998888777777765443 344344 789999999999998888899999999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhH---HHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KED---LMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+++|+|+++..++..+..|+..+.... ..++|+++|+||+|+..... .++ +.+..+ ++++++||+++
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~ 166 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKELG--------IPFIESSAKND 166 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT--------CCEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHHHcC--------CEEEEEeCCCC
Confidence 999999999888888877777665432 25789999999999954322 222 222222 36999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.|+++++++|.+.+.+
T Consensus 167 ~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 167 DNVNEIFFTLAKLIQE 182 (213)
T ss_dssp BSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987754
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-29 Score=178.07 Aligned_cols=163 Identities=19% Similarity=0.204 Sum_probs=115.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEee--CCEEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
....+.++|+++|++|+|||||++++.++.+...+.+|.+..+. .+.. ..+.+.+|||||++.+...+..+++.+|+
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 34466799999999999999999999998888777787764442 2222 34678899999999998888889999999
Q ss_pred EEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcC--------------CHhHHHHHcCCCCcCCCc
Q 029978 91 IVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEAL--------------SKEDLMEQMGLKSITDRE 155 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~ 155 (184)
+++|+|+++++++..+. .|+..+.... .++|+++|+||+|+.+.. ..++....... ...
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~ 168 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEE----IKA 168 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHh----cCC
Confidence 99999999999888886 4555554432 479999999999997531 11111111100 011
Q ss_pred eeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 156 VCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
.++++|||++|.|++++++++.+.+.+
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 369999999999999999999987753
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-30 Score=181.45 Aligned_cols=159 Identities=19% Similarity=0.208 Sum_probs=115.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--CCCCCCCCcccee--e--EEeeCCEEEEEEeCCCccc-chHhHHHhccCCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--YSEDMIPTVGFNM--R--KVTKGNVTIKLWDLGGQPR-FRSMWERYCRAVS 89 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--~~~~~~~t~~~~~--~--~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~ 89 (184)
...+||+++|++|||||||++++.+.. +...+. +++.+. . .++...+.+.+|||+|++. +......+++.++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~-~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC-ccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 345999999999999999999998643 233332 333322 2 2333446788999999876 4556667788999
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|||+++.++|..+..|+..+.......++|+++|+||+|+.+.. ..++... .. ....+++++|||++|.
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~-~a----~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-CA----VVFDCKFIETSAAVQH 188 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-HH----HHHTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHH-HH----HHcCCEEEEEeCCCCC
Confidence 999999999999999988887777654333579999999999997532 2222111 11 0112469999999999
Q ss_pred CHHHHHHHHHHHhh
Q 029978 168 NIDTVIDWLVKHSK 181 (184)
Q Consensus 168 ~v~~l~~~i~~~~~ 181 (184)
||+++|+.+.+.+.
T Consensus 189 ~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 189 NVKELFEGIVRQVR 202 (211)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998775
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-30 Score=179.32 Aligned_cols=161 Identities=16% Similarity=0.226 Sum_probs=92.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC--CCCCCCCCCccc--eeeEEeeC----CEEEEEEeCCCcccchHhHHHhccCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG--GYSEDMIPTVGF--NMRKVTKG----NVTIKLWDLGGQPRFRSMWERYCRAV 88 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~--~~~~~~~~t~~~--~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (184)
...++|+++|++|+|||||++++.++ .+...+.+|.+. ....+... .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999988 777777777763 23333333 67899999999999999999999999
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCccC-c--CCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSKPS--LNGIPLLVLGNKIDKPE-A--LSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
|++++|+|++++.++..+..|+..+..... ..++|+++|+||+|+.+ . ...++..+.... ..++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT-----NTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH-----TTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH-----cCCEEEEecc
Confidence 999999999999989888888777765433 25799999999999976 2 222333222211 1247999999
Q ss_pred CC-CCCHHHHHHHHHHHhhh
Q 029978 164 KN-STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~-~~~v~~l~~~i~~~~~~ 182 (184)
++ +.|+++++++|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987653
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=177.97 Aligned_cols=157 Identities=18% Similarity=0.301 Sum_probs=122.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+..++|+++|++|||||||++++.++.+...+.+|.+..+.. ++...+.+.+|||||++.+...+..+++.+|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 457999999999999999999999998888778887654432 23445889999999999998888899999999999
Q ss_pred EEeCCCCCChHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCccCc--------------CCHhH---HHHHcCCCCcCCCc
Q 029978 94 VVDAADYDNLPVS-RSELHDLLSKPSLNGIPLLVLGNKIDKPEA--------------LSKED---LMEQMGLKSITDRE 155 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~--------------~~~~~---~~~~~~~~~~~~~~ 155 (184)
|||+++++++..+ ..|...+.... .+.|+++|+||+|+.+. ...++ ..+.++ .
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 176 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------A 176 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------C
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC-------C
Confidence 9999999888887 45555554332 47999999999999742 11111 111111 2
Q ss_pred eeEEEeeeC-CCCCHHHHHHHHHHHhhh
Q 029978 156 VCCYMISCK-NSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~-~~~~v~~l~~~i~~~~~~ 182 (184)
.++++|||+ ++.|++++|+.+.+.+.+
T Consensus 177 ~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 177 ATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 479999999 689999999999988754
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-30 Score=176.24 Aligned_cols=162 Identities=15% Similarity=0.295 Sum_probs=113.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcC--CCCCCCCCCccceeeEEe-------eCCEEEEEEeCCCcccchHhHHHhccCCC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATG--GYSEDMIPTVGFNMRKVT-------KGNVTIKLWDLGGQPRFRSMWERYCRAVS 89 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~--~~~~~~~~t~~~~~~~~~-------~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (184)
.++|+++|++|||||||++++.+. .+...+.+|.+....... ...+.+.+|||+|++.+...+..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999974 455566777776654322 24678999999999998888888889999
Q ss_pred EEEEEEeCCCC-CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh----HHHHHcCCCCcCCCceeEEEeeeC
Q 029978 90 AIVYVVDAADY-DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE----DLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 90 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++++|+|+++. .++..+..|+..+.... .+.|+++|+||+|+.+..... +..+.+..........+++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 46777878877765432 478999999999996542211 112222211111111248999999
Q ss_pred CCC-CHHHHHHHHHHHhhh
Q 029978 165 NST-NIDTVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~-~v~~l~~~i~~~~~~ 182 (184)
++. |++++++.|.+.+.+
T Consensus 160 ~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 160 EESDALAKLRKTIINESLN 178 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 997 999999999988764
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-30 Score=180.86 Aligned_cols=160 Identities=22% Similarity=0.402 Sum_probs=126.8
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
....++|+++|++|||||||+++++.+.+...+.+|.+..... .+...+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 3456999999999999999999988777777777777654443 233457899999999999988889999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|+|+++..++..+..|+..+.... .++|+++|+||+|+.+.....+. ........++++++||++|.|+++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKS-----IVFHRKKNLQYYDISAKSNYNFEK 164 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGG-----CCHHHHHTCEEEECBGGGTBTTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHH-----HHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999988888877776542 47899999999999764322211 111112245799999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
++++|.+.+..
T Consensus 165 l~~~l~~~l~~ 175 (221)
T 3gj0_A 165 PFLWLARKLIG 175 (221)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988754
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=164.41 Aligned_cols=163 Identities=20% Similarity=0.331 Sum_probs=120.9
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcc--ceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..++.++|+++|++|+|||||++++.++.+.....++.. .....+...+..+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 346789999999999999999999998887766555443 334455667788999999999998888888889999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc--CC--CceeEEEeeeCCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI--TD--REVCCYMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~Sa~~~~~ 168 (184)
+|+|+++....... ..+..+. ..++|+++|+||+|+.+. ..++....+..... .. ..++++++||++|.|
T Consensus 84 ~v~d~~~~~~~~~~-~~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQTV-EAINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHHH-HHHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHHH-HHHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 99999875433222 2223222 247899999999999764 33444443322111 11 236899999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029978 169 IDTVIDWLVKHSKSK 183 (184)
Q Consensus 169 v~~l~~~i~~~~~~~ 183 (184)
+++++++|.+.+...
T Consensus 158 v~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 158 LDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999887643
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-31 Score=184.33 Aligned_cols=174 Identities=18% Similarity=0.251 Sum_probs=127.0
Q ss_pred HHHHHHHHhh-ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHh
Q 029978 5 EAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
.....++.+. ..++.++|+++|++|+|||||++++.++.+...+.+|...... ..+...+.+.+|||||++.+...
T Consensus 15 ~~~~~~m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 94 (204)
T 3th5_A 15 VPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL 94 (204)
Confidence 3444555553 3356799999999999999999999988887776666653332 23455678889999999999999
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH---------HHHHcCCCC
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED---------LMEQMGLKS 150 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~---------~~~~~~~~~ 150 (184)
+..+++.+|++++|+|++++.++.... .|+..+... . .++|+++|+||+|+.+.....+ +........
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~-~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (204)
T 3th5_A 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172 (204)
Confidence 999999999999999999999998887 444444332 2 3799999999999976422111 111111111
Q ss_pred cCCCce-eEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 151 ITDREV-CCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 151 ~~~~~~-~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
...... +++++||++|.|++++++.|.+.+
T Consensus 173 ~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 173 AKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 222233 789999999999999999998764
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-31 Score=185.28 Aligned_cols=158 Identities=25% Similarity=0.435 Sum_probs=117.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eEEeeCC--EEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|||||||++++.++.+...+.++.+... ..+.... +.+.+|||||++.+...+..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 3469999999999999999999998887776666555333 3333333 78999999999999888889999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-----CHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-----SKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|+++.+++..+..|+..+.... ..++|+++|+||+|+.+.. ..++..+.. .++++++||++|.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNAT 181 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT--------TCCBCCCCC---H
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHHHc--------CCeEEEEECCCCC
Confidence 9999999999999888877775543 3689999999999996542 222332222 3468999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 029978 168 NIDTVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~~ 183 (184)
|+++++++|.+.+.+.
T Consensus 182 gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 182 NVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887653
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-29 Score=173.71 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=111.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC--CCCCCCCCCcccee--e--EEeeCCEEEEEEeCCCccc-chHhHHHhccCCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG--GYSEDMIPTVGFNM--R--KVTKGNVTIKLWDLGGQPR-FRSMWERYCRAVS 89 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~--~~~~~~~~t~~~~~--~--~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~ 89 (184)
...++|+++|++|||||||++++.+. .+...+.+ ++.+. . .++...+.+.+|||+|++. +......+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV-LGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GG-GCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccc-cceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 45699999999999999999999853 23333322 33222 2 2333446788999999865 4445567778899
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|||+++.++|.....|+..+.......++|+++|+||+|+..... .++.. ... ....+++++|||++|.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~-~~a----~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR-AXA----VVFDXKFIETSAAVQH 157 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH-HHH----HHTTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH-HHH----HHhCCceEEeccccCC
Confidence 9999999999999999888877665433335799999999999865322 22211 110 0112469999999999
Q ss_pred CHHHHHHHHHHHhh
Q 029978 168 NIDTVIDWLVKHSK 181 (184)
Q Consensus 168 ~v~~l~~~i~~~~~ 181 (184)
||+++|+.+.+.+.
T Consensus 158 ~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 158 NVKELFEGIVRQVR 171 (192)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-29 Score=172.95 Aligned_cols=162 Identities=20% Similarity=0.289 Sum_probs=109.9
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eE--Ee-eCCEEEEEEeCCCcccchHhH---HHhcc
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RK--VT-KGNVTIKLWDLGGQPRFRSMW---ERYCR 86 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~--~~-~~~~~~~~~D~~g~~~~~~~~---~~~~~ 86 (184)
..++.+||+++|++|||||||++++.+. +......+..... .. +. ...+.+.+|||||++++.... ..+++
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 4456799999999999999999988753 3333222222111 11 22 456899999999999987766 78899
Q ss_pred CCCEEEEEEeCCCC--CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC----HhHHHH----HcCCCCcCCCce
Q 029978 87 AVSAIVYVVDAADY--DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS----KEDLME----QMGLKSITDREV 156 (184)
Q Consensus 87 ~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~----~~~~~~~~~~~~ 156 (184)
.+|++++|||+++. +++.....|+..+.. ...++|+++|+||+|+.+... .+++.. .+.........+
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 99999999999987 344444445554422 225899999999999865311 112211 111111123457
Q ss_pred eEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 157 CCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
++++|||++ .||+++|+.+.+.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 899999999 99999999998765
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=162.61 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=108.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccchH--------hHHHhc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS--------MWERYC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~ 85 (184)
+++.+|+++|++|+|||||++++.+.... ..+..|.......+...+..+.+|||||++.+.. ....++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 35689999999999999999999976542 1222333333444555667899999999865321 112457
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+.+|++++|+|+++..++.. ..|+..+.... ..++|+++|+||+|+.+... ........+++++||++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSART 149 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCC
Confidence 89999999999999888763 35555554332 25799999999999854311 11111346799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 029978 166 STNIDTVIDWLVKHSK 181 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~ 181 (184)
|.|++++++.|.+.+.
T Consensus 150 g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CTTHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999988764
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=165.43 Aligned_cols=162 Identities=19% Similarity=0.176 Sum_probs=107.4
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eEEeeCCEEEEEEeCCC----------cccchHhH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGG----------QPRFRSMW 81 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g----------~~~~~~~~ 81 (184)
.+....++|+++|++|+|||||++++.+..+.....++.+... ...... ..+.+||||| ++.+...+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 3445679999999999999999999998775555444443222 112222 2699999999 66777777
Q ss_pred HHhccCC---CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeE
Q 029978 82 ERYCRAV---SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCC 158 (184)
Q Consensus 82 ~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
..+++.+ |++++|+|+++..++.... +...+.. .+.|+++|+||+|+.+.....+..+.+.........+++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 7777666 9999999999877766532 1122221 568999999999997754333222222111112235689
Q ss_pred EEeeeCCCCCHHHHHHHHHHHhh
Q 029978 159 YMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 159 ~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+++||++|.|++++++++.+.+.
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999998775
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=157.29 Aligned_cols=149 Identities=22% Similarity=0.251 Sum_probs=107.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCC--ccceeeEEeeCCEEEEEEeCCCcccch------HhHHHhcc--C
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPT--VGFNMRKVTKGNVTIKLWDLGGQPRFR------SMWERYCR--A 87 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 87 (184)
+.++|+++|++|+|||||++++.+..+.....++ .......+...+..+.+|||||++.+. .....+++ .
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 3579999999999999999999987654443343 333344455567899999999988763 33445554 7
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC----CHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++++++|+|+++. .....|+..+.. .++|+++|+||+|+.... ..+++.+..+ ++++++||
T Consensus 82 ~~~~i~v~D~~~~---~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA 146 (165)
T 2wji_A 82 PDLVVNIVDATAL---ERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSA 146 (165)
T ss_dssp CSEEEEEEETTCH---HHHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBG
T ss_pred CCEEEEEecCCch---hHhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEc
Confidence 9999999999863 334445555543 368999999999986431 2334444433 35999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
++|.|++++++.+.+.++
T Consensus 147 ~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 147 AKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGTBSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998764
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=168.01 Aligned_cols=162 Identities=15% Similarity=0.158 Sum_probs=109.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCC--CCCccceeeEEeeCCEEEEEEeCCCc------ccc---hHhHHHhc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQ------PRF---RSMWERYC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~------~~~---~~~~~~~~ 85 (184)
.+.++|+++|++|||||||++++.+..+.... ..|..............+.+|||||+ +.. ...+..+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 45799999999999999999999987664222 22333444445556789999999998 331 12233456
Q ss_pred cCCCEEEEEEeCCCCCChHHH--HHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH----HHHHcCCCCcCCCceeEE
Q 029978 86 RAVSAIVYVVDAADYDNLPVS--RSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED----LMEQMGLKSITDREVCCY 159 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 159 (184)
..+|++++|+|+++..++... ..++..+... ..+.|+++|+||+|+.+...... ..+.+. ......++++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 182 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQIL--DNVKNPIKFS 182 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHH--HHCCSCEEEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHH--HhcCCCceEE
Confidence 788999999999998887532 2344444332 24799999999999976432211 111111 0111226799
Q ss_pred EeeeCCCCCHHHHHHHHHHHhhh
Q 029978 160 MISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+|||++|.||++++++|.+.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988754
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-28 Score=177.58 Aligned_cols=157 Identities=22% Similarity=0.282 Sum_probs=115.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC---CCCCCccceeeEEeeCCEEEEEEeCCCcccchH---hHHHhccCCCEEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS---MWERYCRAVSAIVYV 94 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~i~v 94 (184)
||+++|+.|||||||++++.++.++. ...+|++.....+. ..+++++|||+||++|.. ....++++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999887654433 35788887776663 458999999999999964 468899999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcC--CCCCCCcEEEEeeCCCccCcCCH----hHHHHHcCCCCcC----CCceeEEEeeeC
Q 029978 95 VDAADYDNLPVSRSELHDLLSK--PSLNGIPLLVLGNKIDKPEALSK----EDLMEQMGLKSIT----DREVCCYMISCK 164 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~Sa~ 164 (184)
||+++. +.....+|..++.. ...+++|+++|+||+|+.+.... +++..+.+..... ...++|++|||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 44445555443221 11257999999999999764221 2333333322222 246789999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 029978 165 NSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~ 181 (184)
+ .||.+.|..+++.+.
T Consensus 158 d-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp S-SHHHHHHHHHHTTSS
T ss_pred C-CcHHHHHHHHHHHHH
Confidence 8 589999999987654
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-28 Score=167.36 Aligned_cols=161 Identities=19% Similarity=0.201 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCC-----------cccchHhHHHhccC-
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG-----------QPRFRSMWERYCRA- 87 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~~~- 87 (184)
++|+++|++|+|||||++++.+..+...+.++........... .+.+||||| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999999888777666665555555444 689999999 56667777777766
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHH---------HhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCce
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHD---------LLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREV 156 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (184)
++++++++++.+..++......|.. +.......++|+++|+||+|+.... ..+++.+.++.... ....
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLS-EIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGG-GHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhh-ccCC
Confidence 6666666666666677665332221 2222222579999999999997643 23344445544211 1134
Q ss_pred eEEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 157 CCYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
+++++||++|.|++++++++.+.+.+.
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 689999999999999999999987654
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-27 Score=175.16 Aligned_cols=166 Identities=18% Similarity=0.246 Sum_probs=123.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE-E--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+..++|+++|++|+|||||++++.++.+...+.+|....... + +...+.+.+|||||++.+...+..+++.+|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3567999999999999999999999988888877777644432 2 233467779999999999988899999999999
Q ss_pred EEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc---------CCCc-eeEEEe
Q 029978 93 YVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI---------TDRE-VCCYMI 161 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~ 161 (184)
+|+|++++.++..+. .|...+.... .++|+++|+||+|+.+.....+.......... .... .++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 999999988888876 4444444322 37999999999999654211111111111000 0012 379999
Q ss_pred eeCCCCCHHHHHHHHHHHhhhc
Q 029978 162 SCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
||++|.|++++++.+.+.+...
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999887643
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=155.01 Aligned_cols=148 Identities=17% Similarity=0.231 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCccc-------chHhHHHhccCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-------FRSMWERYCRAVS 89 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~~ 89 (184)
.+|+++|++|+|||||++++.+..+. .....+...........+..+.+|||||++. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999987643 1222233344445556677999999999876 3455667889999
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCce-eEEEeeeCCCCC
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREV-CCYMISCKNSTN 168 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 168 (184)
++++|+|+++..+.. ..++..+... .+.|+++|+||+|+.+. ++....+. .... +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~---~~~~~~~~-----~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKH---ELYLGPLY-----GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGG---GGGCGGGG-----GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccc---hHhHHHHH-----hCCCCCeEEEecccCCC
Confidence 999999999864432 3333333332 46899999999999765 11111111 1122 589999999999
Q ss_pred HHHHHHHHHHHh
Q 029978 169 IDTVIDWLVKHS 180 (184)
Q Consensus 169 v~~l~~~i~~~~ 180 (184)
++++++++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998865
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=160.20 Aligned_cols=162 Identities=18% Similarity=0.161 Sum_probs=107.8
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEeeCCEEEEEEeCCC----------cccchHhHHH
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGG----------QPRFRSMWER 83 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g----------~~~~~~~~~~ 83 (184)
+....++|+++|++|+|||||++++.+... ....++.+.... .....+..+.+||||| ++.+...+..
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 345568999999999999999999998763 223333332211 1112234688999999 5566666666
Q ss_pred hccCC---CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEE
Q 029978 84 YCRAV---SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 84 ~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+++.+ +++++|+|+++....... .+...+.. .+.|+++|+||+|+.+....+...+...........+++++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence 66655 999999999876543322 11222211 26899999999999765443333333221111123357999
Q ss_pred eeeCCCCCHHHHHHHHHHHhhh
Q 029978 161 ISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+||++|.|++++++++.+.+.+
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC-
T ss_pred EecCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999998865
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-27 Score=165.58 Aligned_cols=159 Identities=19% Similarity=0.312 Sum_probs=119.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...++|+++|++|||||||++++.+..+...+.+|.+.... .+ +...+.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45689999999999999999999998888777777664332 23 333467889999999988888888888999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++..++.....|+..+... ...+.|+++|+||+|+.+... .++...... ...+.++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 999999887777776666555432 225789999999999975322 222222111 123468999999999999
Q ss_pred HHHHHHHHHhh
Q 029978 171 TVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
++++.+.+.+.
T Consensus 157 ~l~~~l~~~~~ 167 (199)
T 2f9l_A 157 EAFKNILTEIY 167 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-26 Score=167.86 Aligned_cols=161 Identities=18% Similarity=0.136 Sum_probs=119.1
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeC-CEEEEEEeCCCcccch----------HhH
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPRFR----------SMW 81 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~----------~~~ 81 (184)
..+.-.|+++|.+|||||||++++++..+. .....|........... ...+.+|||||+.+.. ...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 355678999999999999999999987654 33344544444556666 8999999999985433 566
Q ss_pred HHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc-CcCCHhHHHHHcCCCCcCCCceeEEE
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP-EALSKEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
..+++.+|++++|+|+++..+......|+..+.. .++|+++|+||+|+. +.....+..+.+.... ....++++
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~~ 160 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIVP 160 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEEE
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEEE
Confidence 7778899999999999998877776554555443 468999999999997 4433333333222111 12346999
Q ss_pred eeeCCCCCHHHHHHHHHHHhhh
Q 029978 161 ISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+||++|.|++++++.+.+.+.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCB
T ss_pred EeCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999988753
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-27 Score=172.41 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=113.2
Q ss_pred cCCceEEEEEcCC---------CCChHHHHHHHHc---CCCCCCCCCCc-cceee------------------EEeeCCE
Q 029978 16 FKQEMELSLIGLQ---------NAGKTSLVNVIAT---GGYSEDMIPTV-GFNMR------------------KVTKGNV 64 (184)
Q Consensus 16 ~~~~~~i~iiG~~---------g~GKStli~~l~~---~~~~~~~~~t~-~~~~~------------------~~~~~~~ 64 (184)
....+||+++|.+ |||||||++++.+ +.+...+.+|+ +..+. .++...+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3456999999999 9999999999998 55666665654 22111 1344568
Q ss_pred EEEEEe-----------------------CCCcccchHhHHHhcc---------------------CCCEEEEEEeCCCC
Q 029978 65 TIKLWD-----------------------LGGQPRFRSMWERYCR---------------------AVSAIVYVVDAADY 100 (184)
Q Consensus 65 ~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~ 100 (184)
.+.+|| ++|++++...+..+++ .+|++++|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 899999 5566666656666665 79999999999998
Q ss_pred --CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 101 --DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 101 --~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
+++..+..|+..+.......++|+++|+||+|+.+....++..+.... ...++++++||++|.|++++++.|.+
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS----KKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT----SSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh----cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 899999888877765422357999999999999654222222221111 12357999999999999999999998
Q ss_pred Hhh
Q 029978 179 HSK 181 (184)
Q Consensus 179 ~~~ 181 (184)
.+.
T Consensus 252 ~l~ 254 (255)
T 3c5h_A 252 LID 254 (255)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-26 Score=166.90 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=112.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCCccceeeEEeeCCEEEEEEeCCCccc--------chHhHHHhcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCR 86 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 86 (184)
+..+|+++|.+|+|||||++++++..+.. .+..|...........+..+.+|||||..+ +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 34679999999999999999999876642 233344333334556789999999999875 4455667889
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+|++++|+|+++..+.. ..++...+.... .+.|+++|+||+|+..... ..+..+.+ ....+++++||++
T Consensus 86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSALD 156 (301)
T ss_dssp SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTTC
T ss_pred cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCCC
Confidence 999999999998865433 344443333321 4799999999999975422 22333333 2234699999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 029978 166 STNIDTVIDWLVKHSK 181 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~ 181 (184)
|.|++++++.+.+.+.
T Consensus 157 g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 157 ERQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9999999999988764
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=171.01 Aligned_cols=161 Identities=19% Similarity=0.216 Sum_probs=117.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEee-CCEEEEEEeCCCcccc-----hHhHHHhccCC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRF-----RSMWERYCRAV 88 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-----~~~~~~~~~~~ 88 (184)
..+||+++|++|||||||++++.++... ..+.+|.+........ +.+.+.+|||||++.+ ...+..+++.+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 4689999999999999999999876332 3577888877766553 5789999999999988 56778888999
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcC-CCCCCCcEEEEeeCCCccCcCCHh-------HHHHHcCCCCcCCCceeEEE
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSK-PSLNGIPLLVLGNKIDKPEALSKE-------DLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 160 (184)
|++++|+|+++.+++..+..|...+... ....++|+++|+||+|+.+..... +....+... .....+++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~-~g~~~~~~~~ 160 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSE-FGFPNLIGFP 160 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHT-TTCCSCEEEE
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHH-cCCCCeEEEE
Confidence 9999999999999998886553322211 012579999999999997632111 111111110 0001357999
Q ss_pred eeeCCCCCHHHHHHHHHHHh
Q 029978 161 ISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~~ 180 (184)
+||++ .|+.+++..+.+.+
T Consensus 161 tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CCTTS-SHHHHHHHHHHHTT
T ss_pred eeecC-ChHHHHHHHHHHHH
Confidence 99999 88999988887654
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=153.96 Aligned_cols=151 Identities=23% Similarity=0.264 Sum_probs=112.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCc--cceeeEEeeCCEEEEEEeCCCcccch------HhHHHhcc--C
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTV--GFNMRKVTKGNVTIKLWDLGGQPRFR------SMWERYCR--A 87 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 87 (184)
+.++|+++|++|||||||++++.+..+.....++. ......+...+..+.+|||||++.+. .....++. .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 56899999999999999999999765543333333 33444566677899999999988763 34455554 5
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC----CHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++++++|+|.++ +.....++..+.. .+.|+++|+||+|+.... ..+++.+..+ ++++++||
T Consensus 86 ~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa 150 (188)
T 2wjg_A 86 PDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSA 150 (188)
T ss_dssp CSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBG
T ss_pred CCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEEEe
Confidence 899999999985 4555556555544 478999999999986432 3344444443 35999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 029978 164 KNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~~~ 183 (184)
+++.|++++++.+.+.+.+.
T Consensus 151 ~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 151 AKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp GGTBSHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999887653
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-26 Score=163.50 Aligned_cols=164 Identities=17% Similarity=0.187 Sum_probs=108.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCCCC----CCCCCCccceeeEEe-eCCEEEEEEeCCCc----------ccch
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYS----EDMIPTVGFNMRKVT-KGNVTIKLWDLGGQ----------PRFR 78 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~----~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~----------~~~~ 78 (184)
.+....++|+++|.+|+|||||++++++.... .....|......... .....+.+|||||. +.+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 44456799999999999999999999987531 112223333333333 34578999999994 3445
Q ss_pred HhHHHhccC---CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc----
Q 029978 79 SMWERYCRA---VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI---- 151 (184)
Q Consensus 79 ~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~---- 151 (184)
.....+++. +|++++|+|+++..+ .....+...+.. .++|+++|+||+|+.+.....+..+.+.....
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 555555554 788999999987543 333333333332 56899999999999765332222221111100
Q ss_pred --CCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 152 --TDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 152 --~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
.....+++++||++|.|++++++.|.+.+..
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 1245689999999999999999999988764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-26 Score=160.23 Aligned_cols=158 Identities=18% Similarity=0.311 Sum_probs=119.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|||||||++++.+..++..+.+|.+.... .+. ...+.+.+||++|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 34589999999999999999999999888888888775442 233 33466778999999988888888888999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++..++..+..|+..+... ...+.|+++|+||+|+.+... .++...... ...+.++++||+++.|++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNGLSFIETSALDSTNVE 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 999999887777776666554332 225789999999999975322 222221111 123468999999999999
Q ss_pred HHHHHHHHHh
Q 029978 171 TVIDWLVKHS 180 (184)
Q Consensus 171 ~l~~~i~~~~ 180 (184)
++++.+.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-26 Score=181.03 Aligned_cols=156 Identities=23% Similarity=0.319 Sum_probs=107.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE------------eeCCEEEEEEeCCCcccchHhHHHh
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV------------TKGNVTIKLWDLGGQPRFRSMWERY 84 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~------------~~~~~~~~~~D~~g~~~~~~~~~~~ 84 (184)
.+.+||+++|.+|||||||++++.+..+.....+|.+...... +...+.+.+|||||++.+......+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 4569999999999999999999999888888888887665532 1235899999999999998888889
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEee
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
++.+|++++|+|+++. .....|...+.... .+.|+++|+||+|+.+... .++..+.... ...+++++|
T Consensus 119 l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~vS 188 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPA-----IENRFHRIS 188 (535)
T ss_dssp HHSSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGG-----GTTCEEECC
T ss_pred ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHh-----cCCceEEEe
Confidence 9999999999999865 44455555554432 3689999999999976432 2333332221 123699999
Q ss_pred eCCCCCHHHHHHHHHHHhhh
Q 029978 163 CKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~ 182 (184)
|++|.|++++++.+.+.+.+
T Consensus 189 A~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp C-----CTTHHHHHHHHHTC
T ss_pred cCcccCHHHHHHHHHHHHhc
Confidence 99999999999999988764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=172.21 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=112.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCc----------ccchHhHH-H
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ----------PRFRSMWE-R 83 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~-~ 83 (184)
..++|+++|.+|||||||++++++..+. .....|.......+...+..+.+|||||+ +.+..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 4589999999999999999999977642 22333444444456667778999999997 44443333 4
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEe
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++.+|++++|+|+++..+++.. .+...+.. .++|+++|+||+|+.+... .++..+.+.........++++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 67889999999999998887765 34443332 4789999999999976533 23343333222222234579999
Q ss_pred eeCCCCCHHHHHHHHHHHhhh
Q 029978 162 SCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
||++|.|++++++.+.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999887653
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=157.72 Aligned_cols=150 Identities=20% Similarity=0.235 Sum_probs=111.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCC--CCCccceeeEEeeCCEEEEEEeCCCcccchH------hHHHhc--c
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYC--R 86 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~ 86 (184)
.+.++|+++|++|||||||++++++..+.... ..|.......+......+.+|||||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45689999999999999999999986654332 3344444445666778999999999876643 234444 5
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC----CHhHHHHHcCCCCcCCCceeEEEee
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.+|++++|+|+++.+. ...++..+.. .++|+++|+||+|+.... ..+++.+.++ ++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~---~~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQ---SLYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHH---HHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECC
T ss_pred CCCEEEEEeCCCchhh---HHHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEE
Confidence 8999999999997543 2334455543 379999999999986431 2344555544 3699999
Q ss_pred eCCCCCHHHHHHHHHHHhh
Q 029978 163 CKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~ 181 (184)
|++|.|++++++.+.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998765
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=158.78 Aligned_cols=148 Identities=28% Similarity=0.343 Sum_probs=106.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEeeCCEEEEEEeCCCcccch------HhHHHhcc--C
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFR------SMWERYCR--A 87 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 87 (184)
..++|+++|++|||||||++++.+........+ |.......+.. ...+.+|||||++.+. .....++. .
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 357999999999999999999997654333333 33333333443 5679999999988764 34455554 6
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc----CCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA----LSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+|++++|+|+++.+ ....+...+.. .++|+++|+||+|+... ...+++.+.++ ++++++||
T Consensus 81 ~d~vi~V~D~t~~e---~~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNLE---RNLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBT
T ss_pred CCEEEEEecCCchH---hHHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEc
Confidence 99999999998743 22334444443 47899999999998543 23344444443 36999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
++|.|++++++.+.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999988654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=168.81 Aligned_cols=160 Identities=17% Similarity=0.169 Sum_probs=111.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCC----------cccchHhHH-H
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGG----------QPRFRSMWE-R 83 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~-~ 83 (184)
..++|+++|.+|+|||||++++.+... ......|.......+...+..+.+||||| ++.+..... .
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 469999999999999999999996542 22233344444455666778999999999 666665544 4
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEe
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++.+|++++|+|+++... ....++...... .++|+++|+||+|+.+... .++..+.+.........++++++
T Consensus 274 ~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 348 (456)
T ss_dssp HHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 6788999999999987443 333344433332 4689999999999976432 23333333322222234579999
Q ss_pred eeCCCCCHHHHHHHHHHHhhh
Q 029978 162 SCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
||++|.|++++++.+.+.+.+
T Consensus 349 SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 349 SALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999987753
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-24 Score=166.98 Aligned_cols=154 Identities=18% Similarity=0.141 Sum_probs=97.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhH--------HHhc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW--------ERYC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 85 (184)
+.+++|+++|.+|+|||||+|++.+... ......|.......+...+..+.+|||||+..+...+ ..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 4679999999999999999999987642 2223334444445566778899999999987655433 3367
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH--HHHHcCCCCcCCCceeEEEeee
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED--LMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+.+|++++|+|++++.++.....+ ..+.... .++|+++|+||+|+.+....+. +.+. + ..+++++||
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~-~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~-------~~~~i~vSA 379 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEI-RELKAAH--PAAKFLTVANKLDRAANADALIRAIADG-T-------GTEVIGISA 379 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHH-HHHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH-H-------TSCEEECBT
T ss_pred ccCCEEEEEEECCCCcchhhhHHH-HHHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc-C-------CCceEEEEE
Confidence 899999999999998887643222 2222222 2699999999999976543221 1111 0 136999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
++|.|+++++++|.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998875
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-25 Score=158.70 Aligned_cols=145 Identities=23% Similarity=0.269 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEeeCCEEEEEEeCCCcccchH----------hHHHhc--
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFRS----------MWERYC-- 85 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~-- 85 (184)
.+|+++|++|||||||++++++........+ |.......+...+..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 3799999999999999999997765433333 33344455666778999999999876542 445566
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC----CHhHHHHHcCCCCcCCCceeEEEe
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+.+|++++|+|+++.+... .....+.. .++|+++|+||+|+.... ..+.+.+.++ ++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~---~l~~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHL---YLTSQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHH---HHHHHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEEC
T ss_pred CCCCEEEEEeeCCCchhHH---HHHHHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEE
Confidence 8899999999999743222 22222222 479999999999986542 2344444443 369999
Q ss_pred eeCCCCCHHHHHHHHHHH
Q 029978 162 SCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~ 179 (184)
||++|.|++++++.+.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999876
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=156.54 Aligned_cols=135 Identities=19% Similarity=0.291 Sum_probs=106.1
Q ss_pred CCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCC----------CCCChHHHHHHHHHHhcCC
Q 029978 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DYDNLPVSRSELHDLLSKP 117 (184)
Q Consensus 48 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~ 117 (184)
..+|++.....++...+.+++|||+|++.++..|..++++++++++|+|++ +..++.+...++..+....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 445666666677788899999999999999999999999999999999665 5667788888888888776
Q ss_pred CCCCCcEEEEeeCCCccCc------------------CCHhHHHHHc-----CCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 118 SLNGIPLLVLGNKIDKPEA------------------LSKEDLMEQM-----GLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 118 ~~~~~piilv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
...++|+++++||+|+... .+.++..+-+ .........+.+++|||+++.||+.+|+
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 6678999999999998642 2333333221 1222334567889999999999999999
Q ss_pred HHHHHhhh
Q 029978 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
.+.+.+.+
T Consensus 311 ~v~~~Il~ 318 (327)
T 3ohm_A 311 AVKDTILQ 318 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=159.12 Aligned_cols=149 Identities=21% Similarity=0.260 Sum_probs=106.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEeeCCEEEEEEeCCCcccch----------HhHHHhc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFR----------SMWERYC 85 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~~~ 85 (184)
+.++|+++|.+|+|||||++++++..+.....+ |.......+...+..+.+|||||+..+. .....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 468999999999999999999998765433333 3334444455566789999999987654 1223333
Q ss_pred --cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC----CHhHHHHHcCCCCcCCCceeEE
Q 029978 86 --RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCY 159 (184)
Q Consensus 86 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
+.+|++++|+|+++.+.... +...+.. .++|+++|+||+|+.+.. ..+++.+.++ ++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLY---LTLQLLE----LGIPCIVALNMLDIAEKQNIRIEIDALSARLG--------CPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHH---HHHHHHH----HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT--------SCEE
T ss_pred hhcCCCEEEEEecCCChHHHHH---HHHHHHh----cCCCEEEEEECccchhhhhHHHHHHHHHHhcC--------CCEE
Confidence 78999999999987443322 2222322 268999999999986542 2344444443 3699
Q ss_pred EeeeCCCCCHHHHHHHHHHHhh
Q 029978 160 MISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
++||++|.|++++++.+.+.+.
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999988765
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=162.02 Aligned_cols=163 Identities=20% Similarity=0.175 Sum_probs=113.5
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCC---CCcc--------------c-----eeeEEeeCCEEEEEEeCCC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMI---PTVG--------------F-----NMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~---~t~~--------------~-----~~~~~~~~~~~~~~~D~~g 73 (184)
.++.++|+++|++++|||||++++++........ .+.. . ...........+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 3567999999999999999999998643322110 0000 0 0000011126899999999
Q ss_pred cccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC--CCCc
Q 029978 74 QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG--LKSI 151 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~--~~~~ 151 (184)
++++.......+..+|++++|+|+++..++.....++..+... ...|+++|+||+|+.+.....+..+++. +...
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999877666666665544332 1258999999999976533222222221 1111
Q ss_pred CCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 152 TDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
....++++++||++|.|+++|++.|.+.+.
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 223567999999999999999999998664
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-23 Score=156.71 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=114.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCCccceeeEEeeCCEEEEEEeCCCcccch---------HhHHHhc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR---------SMWERYC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~ 85 (184)
...++|+++|++|+|||||++++.+..... ....|..............+.+|||||..... .......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 456899999999999999999999766422 23345555555566677899999999974321 1222344
Q ss_pred cCCCEEEEEEeCCCCC--ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 86 RAVSAIVYVVDAADYD--NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
..+|++++|+|+++.. ++.....++..+..... +.|+++|+||+|+......++..+... ...++++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeEEEeC
Confidence 5789999999998877 56666667666654322 799999999999976422222222211 12346899999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 029978 164 KNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~~ 182 (184)
++|.|++++++++.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988753
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=163.12 Aligned_cols=152 Identities=15% Similarity=0.238 Sum_probs=113.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcc-cch--------HhHHHh
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP-RFR--------SMWERY 84 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~ 84 (184)
+.+++|+++|.+|+|||||+|++.+... ...+..|.......+...+..+.+|||||.. .+. .....+
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 3458999999999999999999997653 2333445555556666778899999999987 543 234567
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++.+|++++|+|++++.++... ..+ +.. .++|+++|+||+|+.+....+++.+..+ ..++++++||+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAk 387 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISAL 387 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGG
T ss_pred hhcccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECC
Confidence 7899999999999998776543 222 222 3689999999999976544444443322 12358999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 029978 165 NSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~ 181 (184)
+|.|++++++.|.+.+.
T Consensus 388 tg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GTCCHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998653
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-25 Score=157.14 Aligned_cols=119 Identities=26% Similarity=0.364 Sum_probs=93.9
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCC---CCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccC----
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA---- 87 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~---- 87 (184)
...+.++|+++|++|+|||||++++.+..+... +.++..... ....+.+|||||++.+...+..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 82 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 82 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhcccc
Confidence 345679999999999999999999998776542 333333222 45679999999999998888888876
Q ss_pred CCEEEEEEeCC-CCCChHHHHHHHHHHhcCC---CCCCCcEEEEeeCCCccCcCC
Q 029978 88 VSAIVYVVDAA-DYDNLPVSRSELHDLLSKP---SLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 88 ~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~~~ 138 (184)
+|++++|+|++ +.+++.....++..+.... ...++|+++|+||+|+.....
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 89999999999 8889999888887776432 235799999999999987654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=162.00 Aligned_cols=150 Identities=20% Similarity=0.231 Sum_probs=102.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCccc---------chHhHHHhccCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR---------FRSMWERYCRAV 88 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~~ 88 (184)
+|+++|.+|||||||+|++++... ...+..|...........+..+.+|||||.+. +......+++.+
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~a 82 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 82 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhC
Confidence 799999999999999999997653 23333444555566677788999999999764 244567788999
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHH-HHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDL-MEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
|++++|+|+++..+.. ..++..+++. .++|+++|+||+|+.... ..+. .+...+ ...+++++||++|.
T Consensus 83 d~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~l-----g~~~~~~iSA~~g~ 151 (439)
T 1mky_A 83 DLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREF-EREVKPELYSL-----GFGEPIPVSAEHNI 151 (439)
T ss_dssp SEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGGG-----SSCSCEECBTTTTB
T ss_pred CEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHhc-----CCCCEEEEeccCCC
Confidence 9999999998754433 2333333332 368999999999985320 1111 111111 11147899999999
Q ss_pred CHHHHHHHHHHHhh
Q 029978 168 NIDTVIDWLVKHSK 181 (184)
Q Consensus 168 ~v~~l~~~i~~~~~ 181 (184)
|++++++.+.+.+.
T Consensus 152 gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 152 NLDTMLETIIKKLE 165 (439)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcc
Confidence 99999999998775
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-23 Score=149.58 Aligned_cols=151 Identities=15% Similarity=0.165 Sum_probs=110.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCc--cceeeEEeeCCEEEEEEeCCCcccchH------hHHHhc--cC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTV--GFNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYC--RA 87 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~ 87 (184)
+.++|+++|++|||||||++++.+..+.....++. ......+...+..+.+|||||+..+.. ....++ ..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 35799999999999999999999876643344433 334445666778899999999876644 444554 68
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc----CCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA----LSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+|++++|+|+++. .....++..+... ...|+++|+||+|+.+. .....+.+.++ ++++++||
T Consensus 82 ~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~~~~Sa 147 (271)
T 3k53_A 82 ADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------VPVIPTNA 147 (271)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------SCEEECBG
T ss_pred CcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------CcEEEEEe
Confidence 9999999999874 2333444444443 23899999999997542 23445555554 36999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 029978 164 KNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~~ 182 (184)
++|.|++++++.+.+.+.+
T Consensus 148 ~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988753
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-23 Score=155.58 Aligned_cols=133 Identities=20% Similarity=0.314 Sum_probs=103.2
Q ss_pred CCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC----------CChHHHHHHHHHHhcCCCC
Q 029978 50 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY----------DNLPVSRSELHDLLSKPSL 119 (184)
Q Consensus 50 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~ 119 (184)
+|++.....+....+.+.+|||+|++.++..|..++++++++|+|+|++++ .++.+...++..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 345555555666789999999999999999999999999999999999994 4588888888888876555
Q ss_pred CCCcEEEEeeCCCccCc-----------------CCHhHHHHHcC-----CCCc-CCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 120 NGIPLLVLGNKIDKPEA-----------------LSKEDLMEQMG-----LKSI-TDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 120 ~~~piilv~nK~D~~~~-----------------~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
.++|+++|+||+|+... ...++..+.+. +... ....+.+++|||+++.||+++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 78999999999998531 23334333221 1111 1346789999999999999999999
Q ss_pred HHHhhh
Q 029978 177 VKHSKS 182 (184)
Q Consensus 177 ~~~~~~ 182 (184)
.+.+.+
T Consensus 339 ~~~i~~ 344 (353)
T 1cip_A 339 TDVIIK 344 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=9.1e-23 Score=156.95 Aligned_cols=160 Identities=17% Similarity=0.191 Sum_probs=102.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC---CCCCCCCC--CccceeeEEee---------------C--------CEEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG---GYSEDMIP--TVGFNMRKVTK---------------G--------NVTIKL 68 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~---~~~~~~~~--t~~~~~~~~~~---------------~--------~~~~~~ 68 (184)
+..++|+++|+.++|||||+++|.+. .+..+..+ |+...+..... . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45699999999999999999999843 23333323 55443322110 0 268999
Q ss_pred EeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC----HhHHHH
Q 029978 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS----KEDLME 144 (184)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~ 144 (184)
|||||++++...+...+..+|++++|+|+++..........+..+... ...|+++|+||+|+.+... .+++.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999999888888888899999999999754223333333322211 2258999999999976532 223333
Q ss_pred HcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 145 QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
.+.. .....++++++||++|.|+++|++.|.+.+.
T Consensus 163 ~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 163 FVKG--TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHTT--STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHhh--cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3321 1223567999999999999999999998664
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-24 Score=160.48 Aligned_cols=157 Identities=19% Similarity=0.259 Sum_probs=112.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCC-EEEEEEeCCCccc----chHhHHHh---ccCCCE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPR----FRSMWERY---CRAVSA 90 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~----~~~~~~~~---~~~~~~ 90 (184)
+|+++|.+|||||||++++.+.... ..+..|.......+...+ ..+.+|||||... +..+...+ +..+++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ 239 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 239 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccE
Confidence 5899999999999999999876532 223345554444455443 6899999999543 22232333 455999
Q ss_pred EEEEEeCCC---CCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 91 IVYVVDAAD---YDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 91 ~i~v~d~~~---~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+++|+|+++ .+++.....+..++..... ..++|+++|+||+|+..... .+++.+.+.. ..+++++||++
T Consensus 240 ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~t 313 (342)
T 1lnz_A 240 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAVT 313 (342)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSCC
T ss_pred EEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECCC
Confidence 999999998 7788888777777765432 35899999999999975421 2223333321 14689999999
Q ss_pred CCCHHHHHHHHHHHhhhc
Q 029978 166 STNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~~~ 183 (184)
+.|++++++.|.+.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 314 REGLRELLFEVANQLENT 331 (342)
T ss_dssp SSTTHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHHHHHhhC
Confidence 999999999999988753
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-23 Score=153.35 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=107.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcc-cch--------HhHHHh
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP-RFR--------SMWERY 84 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~ 84 (184)
.+..+|+++|++|+|||||++++++..+. ..+..|.......+......+.+|||||+. ... ......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 34567999999999999999999976542 223334333334456778899999999987 322 223455
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC-cCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE-ALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++.+|++++|+|+++ +.....+....+.. .+.|+++|+||+|+.. .....+..+.+.... ....++++||
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~---~~~~~i~iSA 156 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQM---NFLDIVPISA 156 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTS---CCSEEEECCT
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHhc---CcCceEEEEC
Confidence 778999999999976 33344444443332 4689999999999976 211222223222111 1236899999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
+++.|++++++.+.+.+.
T Consensus 157 ~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999987654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-23 Score=158.91 Aligned_cols=159 Identities=19% Similarity=0.115 Sum_probs=105.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHh------------HHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM------------WER 83 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------------~~~ 83 (184)
.++|+++|++|||||||++++.+... ...+..|.......+...+..+.+|||+|..+.... ...
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~ 259 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD 259 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHH
Confidence 48999999999999999999997653 233333444444455566678999999997433211 134
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEe
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++.+|++++++|+++..+.+.. .+...+.. .+.|+++|+||+|+.+... .++..+.+..........+++++
T Consensus 260 ~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT 334 (439)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEE
Confidence 56789999999999887665542 22333222 4689999999999975422 33333332221222234579999
Q ss_pred eeCCCCCHHHHHHHHHHHhhh
Q 029978 162 SCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
||++|.|++++++.+.+.+.+
T Consensus 335 SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887654
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-23 Score=154.27 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=101.7
Q ss_pred CCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCC----------CCCChHHHHHHHHHHhcCCCC
Q 029978 50 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DYDNLPVSRSELHDLLSKPSL 119 (184)
Q Consensus 50 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~ 119 (184)
+|++.....++.+.+.+++|||+|++.++..|..++++++++|+|+|++ +..++.+...++..+......
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 3455555566677889999999999999999999999999999999998 667788888899888877666
Q ss_pred CCCcEEEEeeCCCccCc-----------------CCHhHHHH----H-------cCCCCcCC-----------CceeEEE
Q 029978 120 NGIPLLVLGNKIDKPEA-----------------LSKEDLME----Q-------MGLKSITD-----------REVCCYM 160 (184)
Q Consensus 120 ~~~piilv~nK~D~~~~-----------------~~~~~~~~----~-------~~~~~~~~-----------~~~~~~~ 160 (184)
.++|+++++||+|+... .+.++..+ . ..+..... +.+.+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 78999999999998642 11222222 1 11111112 4578899
Q ss_pred eeeCCCCCHHHHHHHHHHHhh
Q 029978 161 ISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
|||++..||+.+|+.+.+.+.
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il 327 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIM 327 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHH
Confidence 999999999999999988765
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-23 Score=160.06 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=100.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhH--------HHhc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW--------ERYC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 85 (184)
+.+++|+++|++|+|||||+|++.+..+. .....|.......+...+..+.+|||||...+.... ..++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 45789999999999999999999975432 222333334334556677899999999976554332 2357
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+.+|++++|+|++++.+... ..++..+ . ..|+++|+||+|+.+..... . ... .....+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l-~-----~~piivV~NK~Dl~~~~~~~----~--~~~-~~~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV-K-----HRPLILVMNKIDLVEKQLIT----S--LEY-PENITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH-T-----TSCEEEEEECTTSSCGGGST----T--CCC-CTTCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc-c-----CCcEEEEEECCCCCcchhhH----H--HHH-hccCCcEEEEECCC
Confidence 88999999999998766543 2333333 2 36999999999997652211 1 111 11345799999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 029978 166 STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~~ 182 (184)
|.|++++++.|.+.+..
T Consensus 368 g~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 KQGIDSLETAILEIVQT 384 (462)
T ss_dssp TBSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988754
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-23 Score=154.40 Aligned_cols=125 Identities=20% Similarity=0.306 Sum_probs=91.1
Q ss_pred EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC----------CCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 029978 58 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------YDNLPVSRSELHDLLSKPSLNGIPLLVL 127 (184)
Q Consensus 58 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~piilv 127 (184)
.+...++.+.+|||+|++.++..+..++++++++|+|+|+++ ..++.+...++..+.......++|+|+|
T Consensus 195 ~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv 274 (362)
T 1zcb_A 195 DFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILF 274 (362)
T ss_dssp EEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEE
T ss_pred EeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEE
Confidence 345567899999999999999999999999999999999999 5578888889988887655578999999
Q ss_pred eeCCCccCc------------------CCHhHHHHHc-----CCCCcC-CCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 128 GNKIDKPEA------------------LSKEDLMEQM-----GLKSIT-DREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 128 ~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+||+|+... ...++..+.+ .+.... ...+.+++|||+++.||+++|+.+.+.+.+
T Consensus 275 ~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 275 LNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp EECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 999998631 3334443322 222211 345678999999999999999999887653
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-23 Score=161.05 Aligned_cols=150 Identities=21% Similarity=0.227 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcc--------cchHhHHHhccCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP--------RFRSMWERYCRAV 88 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~~ 88 (184)
.+|+++|.+|||||||++++.+..+. ..++.|...........+..+.+|||||++ .+......+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999976543 223333344444555566789999999985 4566677888999
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|+.+..+.. ..++..++.. .++|+++|+||+|+..... + . .........+++++||++|.|
T Consensus 84 d~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~----~-~~~~~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA--N----I-YDFYSLGFGEPYPISGTHGLG 151 (436)
T ss_dssp SEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------C----C-CSSGGGSSCCCEECBTTTTBT
T ss_pred CEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh--h----H-HHHHHcCCCCeEEEeCcCCCC
Confidence 9999999998865543 3445555443 5789999999999865311 0 0 011111112589999999999
Q ss_pred HHHHHHHHHHHhh
Q 029978 169 IDTVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~~~ 181 (184)
++++++.+.+.+.
T Consensus 152 v~~L~~~i~~~l~ 164 (436)
T 2hjg_A 152 LGDLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHHHTGG
T ss_pred hHHHHHHHHHhcC
Confidence 9999999998875
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-23 Score=162.55 Aligned_cols=160 Identities=18% Similarity=0.203 Sum_probs=109.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC-------CC--CCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG-------YS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA 87 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~-------~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 87 (184)
.+.++|+++|++++|||||+++|.+.. .. .....|+...+..+......+.+|||||++++.......+..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 346899999999999999999999765 22 223345555555566677899999999999998888999999
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCC--Cc-CCCceeEEEeeeC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK--SI-TDREVCCYMISCK 164 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~Sa~ 164 (184)
+|++++|+|+++...-+ ....+. ++.. .++|+++|+||+|+.+....++..+++... .. .....+++++||+
T Consensus 97 aD~~ilVvda~~g~~~q-t~e~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~ 171 (482)
T 1wb1_A 97 IDLALIVVDAKEGPKTQ-TGEHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 171 (482)
T ss_dssp CCEEEEEEETTTCSCHH-HHHHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred CCEEEEEEecCCCccHH-HHHHHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECc
Confidence 99999999998743212 222222 2222 368899999999997642222222222110 00 1114579999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 029978 165 NSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~ 181 (184)
+|.|+++|++.|.+.+.
T Consensus 172 ~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 172 TGFGVDELKNLIITTLN 188 (482)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhc
Confidence 99999999999998764
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.5e-23 Score=157.54 Aligned_cols=160 Identities=17% Similarity=0.213 Sum_probs=108.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC---CCCCCCCC--CccceeeEEee------------------C-----CEEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG---GYSEDMIP--TVGFNMRKVTK------------------G-----NVTIKL 68 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~---~~~~~~~~--t~~~~~~~~~~------------------~-----~~~~~~ 68 (184)
+..++|+++|++++|||||+++|.+. .+..+..+ |+...+..... + ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 45689999999999999999999843 22333222 55443332111 1 268999
Q ss_pred EeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH----hHHHH
Q 029978 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK----EDLME 144 (184)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~ 144 (184)
|||||+++|.......+..+|++++|+|+++..........+..+... ...|+++|+||+|+.+.... +++.+
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~ 164 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE 164 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHHH
Confidence 999999999888888888999999999999753222333333222211 12589999999999764321 22222
Q ss_pred HcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 145 QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
.+.. ......+++++||++|.|+++|++.|.+.+.
T Consensus 165 ~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 165 FIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 2221 1123568999999999999999999998654
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-22 Score=158.65 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=109.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC--CCCC---------------CCCCCccceeeEEe-----eCCEEEEEEeCCCc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG--GYSE---------------DMIPTVGFNMRKVT-----KGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~--~~~~---------------~~~~t~~~~~~~~~-----~~~~~~~~~D~~g~ 74 (184)
++-.+|+++|+.++|||||+++++.. .... +...|+......+. ...+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 44578999999999999999999842 1110 11123322222332 22488999999999
Q ss_pred ccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCC
Q 029978 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 154 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
++|...+...++.+|++++|+|+++....+....|..... .++|+++|+||+|+.... .++..+++.... ...
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l-g~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL-GLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS-CCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC-HHHHHHHHHHhh-CCC
Confidence 9999989999999999999999999877776655544332 468999999999997653 333333322111 111
Q ss_pred ceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 155 EVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
..+++++||++|.|++++++.+.+.+..
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 2248999999999999999999987753
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=157.91 Aligned_cols=115 Identities=21% Similarity=0.188 Sum_probs=89.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC-----------------C-CC------CCCCCCccceeeEEeeCCEEEEEEeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG-----------------G-YS------EDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~-----------------~-~~------~~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+..+|+|+|++|+|||||+++|+.. . +. .....|+......+...++.+++||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 45689999999999999999999611 0 00 012335555566677889999999999
Q ss_pred CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
|++++......+++.+|++++|+|+++....+... .|..+.. .++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCccc
Confidence 99999999999999999999999999876655543 3333332 46899999999999654
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-23 Score=159.37 Aligned_cols=153 Identities=18% Similarity=0.164 Sum_probs=106.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCC-EEEEEEeCCCcccchHh-------HHHhc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRFRSM-------WERYC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~-------~~~~~ 85 (184)
...++|+++|++|+|||||++++++..+. .....|.......+.... ..+.+|||||++++... ...++
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 45689999999999999999999977652 233344454555555444 38999999998765432 45678
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+.+|++++|+|+.. ......++..+... ++|+++|+||+|+...... +..+.+... ..++++++||++
T Consensus 112 ~~aD~vllVvD~~~---~~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~~~----~g~~v~~vSAkt 179 (423)
T 3qq5_A 112 YRADCGILVTDSAP---TPYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYESR----YEAKVLLVSALQ 179 (423)
T ss_dssp TSCSEEEEECSSSC---CHHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSSCC----TTCCCCCCSSCC
T ss_pred hcCCEEEEEEeCCC---hHHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHHHH----cCCCEEEEECCC
Confidence 89999999999832 23334444444433 7899999999999876543 333333321 234799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 029978 166 STNIDTVIDWLVKHSK 181 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~ 181 (184)
|.|++++++.|.+.+.
T Consensus 180 g~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 180 KKGFDDIGKTISEILP 195 (423)
T ss_dssp TTSTTTHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999999874
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-22 Score=157.50 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=106.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCC--CC-----C----------CCCCCccceeeEEee-----CCEEEEEEeCCCcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGG--YS-----E----------DMIPTVGFNMRKVTK-----GNVTIKLWDLGGQP 75 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~--~~-----~----------~~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~ 75 (184)
+-.+|+|+|+.++|||||+++++... .. . +...|+......+.+ ..+.+++|||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45789999999999999999998521 11 0 111222222223322 24889999999999
Q ss_pred cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCCCCcC
Q 029978 76 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLKSIT 152 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~ 152 (184)
++...+...++.+|++++|+|+++....+....|..... .++|+++|+||+|+.+... .+++.+.++..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID--- 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC---
Confidence 999999999999999999999998877777655544432 3689999999999976532 12333333322
Q ss_pred CCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 153 DREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
..+++++||++|.|++++++.+.+.+..
T Consensus 155 --~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 155 --ATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp --CTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred --cceEEEeecccCCCchhHHHHHhhcCCC
Confidence 1248999999999999999999988753
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-23 Score=144.98 Aligned_cols=126 Identities=25% Similarity=0.354 Sum_probs=92.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccC----C
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA----V 88 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~ 88 (184)
..+.++|+++|++|||||||++++.+..+.. ...++... +.....+.+|||||++.+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 3567899999999999999999999876544 22222222 1245679999999998887666666655 8
Q ss_pred CEEEEEEeCC-CCCChHHHHHHHHHHhcCC---CCCCCcEEEEeeCCCccCcCCHhHHHHHc
Q 029978 89 SAIVYVVDAA-DYDNLPVSRSELHDLLSKP---SLNGIPLLVLGNKIDKPEALSKEDLMEQM 146 (184)
Q Consensus 89 ~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~~~~~~~~~~~ 146 (184)
|++++|+|++ +.+++.....++..+.... ...++|+++|+||+|+.+....+++.+.+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999999 7777888777777665431 22579999999999998876666555544
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-23 Score=161.91 Aligned_cols=154 Identities=14% Similarity=0.076 Sum_probs=102.8
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCC--C-------------------------------CCCCCCCccceeeEEeeC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGG--Y-------------------------------SEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~ 62 (184)
.+..++|+++|++++|||||+++|++.. + ......|+......++..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 3667999999999999999999997431 0 111233555555667777
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChH-----HHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP-----VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 137 (184)
...+.+|||||++++.......++.+|++++|+|+++...+. ........+.... ...|+++|+||+|+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence 889999999999999999999999999999999999864321 1122222222221 124699999999997632
Q ss_pred --CHhHHHHHcC----CCCcCCCceeEEEeeeCCCCCHHH
Q 029978 138 --SKEDLMEQMG----LKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 138 --~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
..+++.+.+. ........++++++||++|.|+++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1122222211 001112356899999999999985
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=153.15 Aligned_cols=148 Identities=11% Similarity=0.093 Sum_probs=109.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
+|+++|++++|||||+++|+ +...|+......+...+..+.+|||||+++|.......++.+|++++|+| +.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~- 94 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ- 94 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-
Confidence 89999999999999999997 45566666667777777899999999999998888888899999999999 43
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcE-EEEee-CCCccCcCCHhHHHHHcC--CCCcCCCceeEEE--eeeCC---CCCHHH
Q 029978 101 DNLPVSRSELHDLLSKPSLNGIPL-LVLGN-KIDKPEALSKEDLMEQMG--LKSITDREVCCYM--ISCKN---STNIDT 171 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pi-ilv~n-K~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~Sa~~---~~~v~~ 171 (184)
......+.++..+.. .++|. ++|+| |+|+ +....++..+++. +.......+++++ +||++ +.|+++
T Consensus 95 g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~ 169 (370)
T 2elf_A 95 GLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDE 169 (370)
T ss_dssp CCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHH
T ss_pred CCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHH
Confidence 334444444443332 35777 89999 9999 4322222212211 1111123468999 99999 999999
Q ss_pred HHHHHHHHhh
Q 029978 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
+++.|.+.+.
T Consensus 170 L~~~l~~~~~ 179 (370)
T 2elf_A 170 LKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcc
Confidence 9999988764
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=157.07 Aligned_cols=154 Identities=19% Similarity=0.180 Sum_probs=103.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--C-----------------------------C--CCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--Y-----------------------------S--EDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--~-----------------------------~--~~~~~t~~~~~~~~~~~~ 63 (184)
+..++|+++|++++|||||+++|+... . . .+...|+......+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 456999999999999999999996321 0 0 112234444555566777
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCC---hH---HHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCc
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN---LP---VSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEA 136 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~ 136 (184)
..+.+|||||+++|.......++.+|++++|+|+++... |. ..+..+... .. .++| +++|+||+|+...
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~---~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT---AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH---cCCCeEEEEeecCCCccc
Confidence 899999999999999988999999999999999987532 11 122222222 11 3567 9999999999642
Q ss_pred CC----HhHHHHHcC----C-CCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 137 LS----KEDLMEQMG----L-KSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 137 ~~----~~~~~~~~~----~-~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
.. .+++.+++. . .......++++++||++|.|++++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 11 122222211 1 11111256899999999999999654
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.9e-24 Score=166.78 Aligned_cols=160 Identities=17% Similarity=0.178 Sum_probs=113.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEee-CCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
++..+|+++|++++|||||+++|.+..+.....+ |.......+.. ....+.+|||||++.|...+...++.+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4567899999999999999999986554333333 33333333322 34579999999999999988899999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCC-CcCCCceeEEEeeeCCCCCHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLK-SITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
|+|+++....+.. ..+..+.. .++|+++|+||+|+.+... ..+.....+.. ......++++++||++|.|++
T Consensus 82 VVDa~dg~~~qt~-e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQTV-ESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHHHH-HHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHHHH-HHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 9999986554433 23333322 4689999999999975321 12222233221 122235689999999999999
Q ss_pred HHHHHHHHHhh
Q 029978 171 TVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
++++.+...+.
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999988764
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=151.70 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=103.4
Q ss_pred HHHhhccCCceEEEEEcCCCCChHHHHHHHHcCC---CCCC--------------------------------CCCCccc
Q 029978 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGG---YSED--------------------------------MIPTVGF 54 (184)
Q Consensus 10 ~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~---~~~~--------------------------------~~~t~~~ 54 (184)
++.+...+..++|+++|++++|||||+++|++.. +... ...|+..
T Consensus 15 ~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~ 94 (434)
T 1zun_B 15 YLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDV 94 (434)
T ss_dssp -CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCC
T ss_pred HHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEe
Confidence 3333334456999999999999999999998543 1100 1123333
Q ss_pred eeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC-cEEEEeeCCCc
Q 029978 55 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI-PLLVLGNKIDK 133 (184)
Q Consensus 55 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-piilv~nK~D~ 133 (184)
.+..+......+.+|||||+++|...+...+..+|++++|+|+++....+ ...++..+.. .+. |+++|+||+|+
T Consensus 95 ~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~----~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 95 AYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASL----LGIKHIVVAINKMDL 169 (434)
T ss_dssp EEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEEECTTT
T ss_pred eeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEEcCcC
Confidence 33445567789999999999999888888899999999999999865322 2333332222 134 69999999999
Q ss_pred cCcCC--HhHHHHHcC----CCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 134 PEALS--KEDLMEQMG----LKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 134 ~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
.+... .+++.+++. ........++++++||++|.|++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 76321 111222111 1110123468999999999999873
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-22 Score=144.58 Aligned_cols=160 Identities=14% Similarity=0.153 Sum_probs=104.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC-CCCCCCC---CccceeeEEeeCCEEEEEEeCCCcccch-----------HhH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG-YSEDMIP---TVGFNMRKVTKGNVTIKLWDLGGQPRFR-----------SMW 81 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~-~~~~~~~---t~~~~~~~~~~~~~~~~~~D~~g~~~~~-----------~~~ 81 (184)
...++|+++|++|+|||||++++++.. +.....+ |...........+..+.+|||||+..+. ...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 456999999999999999999999766 4444333 3334444566778899999999976542 223
Q ss_pred HHhccCCCEEEEEEeCCCCCChH-HHHHHHHHHhcCCCCCCCcEEEEee-CCCccCcCCHhH------------HHHHcC
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLP-VSRSELHDLLSKPSLNGIPLLVLGN-KIDKPEALSKED------------LMEQMG 147 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~piilv~n-K~D~~~~~~~~~------------~~~~~~ 147 (184)
..+++.+|++++|+|+++..... ....++..+... ....|.++|+| |+|+.+. ...+ ..+.++
T Consensus 100 ~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTT
T ss_pred HhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhC
Confidence 34678899999999998632211 111222222211 11457777777 9999753 3333 233332
Q ss_pred CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 148 LKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
.... .+..+++||+++.|++++++.|.+.+.+
T Consensus 177 ~~~~---~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 177 GRIC---AFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TCEE---ECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEE---EecCcccccccHHHHHHHHHHHHHHHHh
Confidence 2110 0111789999999999999999998765
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-22 Score=150.39 Aligned_cols=157 Identities=22% Similarity=0.260 Sum_probs=102.6
Q ss_pred CceE-EEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCCEEEEEEeCCCccc---------chHhHHHhc
Q 029978 18 QEME-LSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR---------FRSMWERYC 85 (184)
Q Consensus 18 ~~~~-i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~ 85 (184)
.+++ |+++|++|+|||||++++.+..+. ....+|.+.....+...+..+.+|||+|... +... ...+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~ 255 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVT-LSEA 255 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHH-HHGG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHH-HHHH
Confidence 3455 899999999999999999987653 2345565555556666668899999999621 2222 2346
Q ss_pred cCCCEEEEEEeCCCCC--ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH---HH----HHcCCCCcCCCce
Q 029978 86 RAVSAIVYVVDAADYD--NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED---LM----EQMGLKSITDREV 156 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~---~~----~~~~~~~~~~~~~ 156 (184)
..+|.+++|+|++++. ...... .+..++......+.|+++|+||+|+.+.. ..+ .. ..+. ...+
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~-----~~~~ 328 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY-----SPIF 328 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC-----SCEE
T ss_pred HhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc-----CCCC
Confidence 8899999999998764 222222 22233322233578999999999997643 222 11 1221 1234
Q ss_pred eEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 157 CCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+++++||+++.|++++++.|.+.+..
T Consensus 329 ~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 329 DVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 68999999999999999999987754
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=157.64 Aligned_cols=151 Identities=21% Similarity=0.236 Sum_probs=103.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCC--------cccchHhHHHhccC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGG--------QPRFRSMWERYCRA 87 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~~~~~ 87 (184)
..+|+++|.+|||||||++++.+..+. ..+..|..............+.+||||| ++.+......+++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 468999999999999999999976543 2223333344445556677899999999 66777788888999
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|..+ ++.....++..++.. .++|+++|+||+|+.+... +. .. .........+++||++|.
T Consensus 103 ad~il~VvD~~~--~~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~--~~----~e-~~~lg~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 103 ADVIIFMVNGRE--GVTAADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NI----YD-FYSLGFGEPYPISGTHGL 170 (456)
T ss_dssp CSEEEEEEESSS--CSCHHHHHHHHHHTT---CCSCEEEEEECC---------------CC-SGGGSSSSEEECCTTTCT
T ss_pred CCEEEEEEeCCC--CCChHHHHHHHHHHH---cCCCEEEEEECccchhhhh--hH----HH-HHHcCCCceEEeeccccc
Confidence 999999999876 344555566666554 5799999999999864311 11 11 111111236799999999
Q ss_pred CHHHHHHHHHHHhh
Q 029978 168 NIDTVIDWLVKHSK 181 (184)
Q Consensus 168 ~v~~l~~~i~~~~~ 181 (184)
|++++++.+.+.+.
T Consensus 171 gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 171 GLGDLLDAVAEHFK 184 (456)
T ss_dssp THHHHHHHHHTTGG
T ss_pred chHHHHHHHHhhcc
Confidence 99999999988764
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-22 Score=152.63 Aligned_cols=160 Identities=17% Similarity=0.138 Sum_probs=111.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC--------CCCC-----------CCCCCccceeeEEeeCCEEEEEEeCCCcccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG--------GYSE-----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~--------~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (184)
+..++|+++|++++|||||+++|.+. .+.. ....|+......++.....+.+|||||+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45699999999999999999999862 1111 1223444444456666789999999999999
Q ss_pred hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCC-Hh----HHHHHcCCCCc
Q 029978 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALS-KE----DLMEQMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~~----~~~~~~~~~~~ 151 (184)
.......++.+|++++|+|+++.... ....++..+.. .++| +++|+||+|+.+... .+ ++.+.+.....
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 98888999999999999999886543 33444443332 3678 899999999975211 11 11111111111
Q ss_pred CCCceeEEEeeeCCCCC------------------HHHHHHHHHHHhh
Q 029978 152 TDREVCCYMISCKNSTN------------------IDTVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~------------------v~~l~~~i~~~~~ 181 (184)
.....+++++||++|.| +++|++.+.+.+.
T Consensus 164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 11245799999999987 8888888887654
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-22 Score=153.16 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=109.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC-------CCCC-----------CCCCCccceeeEEeeCCEEEEEEeCCCcccchH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG-------GYSE-----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~-------~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
+.++|+++|++++|||||+++|.+. .+.. ....|+......+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 4689999999999999999999863 1110 122344444444556678999999999999988
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCC-H----hHHHHHcCCCCcCC
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALS-K----EDLMEQMGLKSITD 153 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~----~~~~~~~~~~~~~~ 153 (184)
.....++.+|++++|+|+++....+. ...+..+.. .++| +++|+||+|+.+... . +++.+.+.......
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 88889999999999999998654332 333333322 3678 789999999975211 1 11212211111111
Q ss_pred CceeEEEeeeCCCCC----------HHHHHHHHHHHhh
Q 029978 154 REVCCYMISCKNSTN----------IDTVIDWLVKHSK 181 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~----------v~~l~~~i~~~~~ 181 (184)
..++++++||++|.| +++|++.+.+.+.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 245799999999765 8999999988664
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=143.37 Aligned_cols=172 Identities=16% Similarity=0.162 Sum_probs=108.5
Q ss_pred hHHHHHHHHHhhcc---CCceEEEEEcCCCCChHHHHHHHHcCCCCCC------CCCC----------------------
Q 029978 3 LWEAFLNWLRSLFF---KQEMELSLIGLQNAGKTSLVNVIATGGYSED------MIPT---------------------- 51 (184)
Q Consensus 3 ~~~~~~~~~~~~~~---~~~~~i~iiG~~g~GKStli~~l~~~~~~~~------~~~t---------------------- 51 (184)
+++++.+.++.... ....+|+++|.+|+|||||++++++..+.+. ..|+
T Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~ 86 (299)
T 2aka_B 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF 86 (299)
T ss_dssp HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCccc
Confidence 45667766665433 2457999999999999999999998776321 1121
Q ss_pred ccce-------------------------eeEEeeC-CEEEEEEeCCCcc-------------cchHhHHHhccCCCEEE
Q 029978 52 VGFN-------------------------MRKVTKG-NVTIKLWDLGGQP-------------RFRSMWERYCRAVSAIV 92 (184)
Q Consensus 52 ~~~~-------------------------~~~~~~~-~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i 92 (184)
.... ...+... ...+.+|||||.. .+......+++.++.++
T Consensus 87 tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 166 (299)
T 2aka_B 87 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 166 (299)
T ss_dssp CCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEE
Confidence 0000 0001111 3679999999963 34456677888888766
Q ss_pred -EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 -YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 -~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++.........+...+ . ..+.|+++|+||+|+.+... ..+..+. ..........+++++||++|.|++
T Consensus 167 l~v~d~~~~~~~~~~~~~~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~SA~~~~gi~ 241 (299)
T 2aka_B 167 LAVSPANSDLANSDALKIAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKK 241 (299)
T ss_dssp EEEEESSSCGGGCHHHHHHHHH-C---TTCSSEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCCBCTTSCB
T ss_pred EEEecCCcchhhhHHHHHHHHh-C---CCCCeEEEEEEccccCCCCchHHHHHhC-CcCcCCCCcEEEECCChhhccccc
Confidence 689998743333322233322 2 24789999999999976432 2222221 111111123578999999999999
Q ss_pred HHHHHHHHH
Q 029978 171 TVIDWLVKH 179 (184)
Q Consensus 171 ~l~~~i~~~ 179 (184)
++++.+.+.
T Consensus 242 ~l~~~l~~~ 250 (299)
T 2aka_B 242 DITAALAAE 250 (299)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 999998753
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-22 Score=155.73 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=99.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC--CCCC-------------------------------CCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG--GYSE-------------------------------DMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|++++|||||+++|+.. .+.. ....|+......++...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999853 2221 23345555555677778
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHH-------HHHHHHHhcCCCCCCC-cEEEEeeCCCccC
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-------RSELHDLLSKPSLNGI-PLLVLGNKIDKPE 135 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~-piilv~nK~D~~~ 135 (184)
..+.+|||||+++|...+..+++.+|++++|+|+++ .+|... +..+..... .++ |+++|+||+|+.+
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~----~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT----MGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH----TTCTTCEEEEECGGGSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH----cCCCeEEEEEEcccCCC
Confidence 899999999999999989999999999999999998 444432 222221111 233 6899999999976
Q ss_pred cC-C-------HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 136 AL-S-------KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 136 ~~-~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
.. . .+++.+.+.........++++++||++|.|+.++
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 31 1 1122222111111112468999999999999743
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-22 Score=151.45 Aligned_cols=121 Identities=17% Similarity=0.274 Sum_probs=90.9
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCC----------CCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 131 (184)
..+.+.+|||+|++.++..+..++++++++|+|||++ +.+++.+...++..+.......++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4578999999999999999999999999999999998 677888888899888876555789999999999
Q ss_pred CccCcCC-----------------------HhHHHHHcCC--------C--C-cCCCceeEEEeeeCCCCCHHHHHHHHH
Q 029978 132 DKPEALS-----------------------KEDLMEQMGL--------K--S-ITDREVCCYMISCKNSTNIDTVIDWLV 177 (184)
Q Consensus 132 D~~~~~~-----------------------~~~~~~~~~~--------~--~-~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
|+..... .++..+.+.. . . .......+++|||+++.||+++|+.+.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9853210 1111111110 0 0 012345678999999999999999998
Q ss_pred HHhhh
Q 029978 178 KHSKS 182 (184)
Q Consensus 178 ~~~~~ 182 (184)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-21 Score=150.40 Aligned_cols=116 Identities=21% Similarity=0.246 Sum_probs=84.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--C------C----------------CCCCCCccceeeEEeeCCEEEEEEeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--Y------S----------------EDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--~------~----------------~~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+..+|+++|++|+|||||+++++... . . .....|+......+....+.+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 567899999999999999999998521 1 0 011223333444567788999999999
Q ss_pred CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC
Q 029978 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 137 (184)
|++++......+++.+|++++|+|+++....+ ....+. ... ..++|+++|+||+|+....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~-~~~---~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLME-VTR---LRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHH-HHT---TTTCCEEEEEECTTSCCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHH-HHH---HcCCCEEEEEcCcCCcccc
Confidence 99999988889999999999999998754322 122222 222 2578999999999997653
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-22 Score=159.03 Aligned_cols=157 Identities=25% Similarity=0.280 Sum_probs=107.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCC--CCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
++..+|+++|++++|||||++++.+..+.... ..|.......+...+..+.+|||||++.|...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 45678999999999999999999865443222 2233333333444556799999999999988888888999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCC----CcCCCceeEEEeeeCCCCCHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK----SITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+++...-+.. ..+..... .++|+++|+||+|+..... +++...+... ......++++++||++|.|++
T Consensus 82 Vda~~g~~~qT~-e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMPQTI-EAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCTTTH-HHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccHHHH-HHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 999874322222 22222221 4689999999999975321 2222222111 111124689999999999999
Q ss_pred HHHHHHHHH
Q 029978 171 TVIDWLVKH 179 (184)
Q Consensus 171 ~l~~~i~~~ 179 (184)
++++.+...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998753
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-21 Score=137.49 Aligned_cols=165 Identities=12% Similarity=0.063 Sum_probs=98.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCC----CCccceeeEEeeCCEEEEEEeCCCcc-----------cchHh
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMI----PTVGFNMRKVTKGNVTIKLWDLGGQP-----------RFRSM 80 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~-----------~~~~~ 80 (184)
....++|+++|++|+|||||++++++..+..... .|..............+.+|||||.. .+...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999999877654432 23334444566777899999999932 33444
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccCcCCHhHHHHHcCC--C-CcCCCce
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEALSKEDLMEQMGL--K-SITDREV 156 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~--~-~~~~~~~ 156 (184)
.....+.+|++++|+|++..... ...++..+..... ....|+++|+||+|+......++....... . .......
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS
T ss_pred HHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence 55566788999999999865542 2223332221110 123699999999998765332211111000 0 0000011
Q ss_pred eEEEeeeCC-----CCCHHHHHHHHHHHhhh
Q 029978 157 CCYMISCKN-----STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 157 ~~~~~Sa~~-----~~~v~~l~~~i~~~~~~ 182 (184)
.++.+++.. ..++.+|++.+.+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 184 RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 255555553 36899999999887754
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-22 Score=158.60 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=103.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCC---------------------------------CCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSE---------------------------------DMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~---------------------------------~~~~t~~~~~~~~~~~~ 63 (184)
+..++|+++|++|+|||||+++|++..... ..+.|+......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 446899999999999999999998542211 12335555556677778
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC---CCh--HHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY---DNL--PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~--~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
..+.+|||||++++.......++.+|++++|+|+++. .++ .........+.... ...|+++|+||+|+.+...
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhH
Confidence 8999999999999999999999999999999999862 111 11111222222221 1245999999999976211
Q ss_pred --HhHHHHHcC----CCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 139 --KEDLMEQMG----LKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 139 --~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
.+++.+.+. ........++++++||++|.|++++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 112222111 0011112468999999999999865
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-21 Score=147.56 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=94.7
Q ss_pred eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC----------CCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 029978 60 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------YDNLPVSRSELHDLLSKPSLNGIPLLVLGN 129 (184)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~piilv~n 129 (184)
...++.+.+|||+|++.++..+..++++++++|+|||+++ ..++.....|+..+.......++|+++|+|
T Consensus 213 ~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgN 292 (402)
T 1azs_C 213 QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLN 292 (402)
T ss_dssp EETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEE
T ss_pred ecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 3356789999999999999999999999999999999999 788999999999988775567899999999
Q ss_pred CCCccCcCC--------------------------------HhHHHHHc-----CC---CCcCCCceeEEEeeeCCCCCH
Q 029978 130 KIDKPEALS--------------------------------KEDLMEQM-----GL---KSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 130 K~D~~~~~~--------------------------------~~~~~~~~-----~~---~~~~~~~~~~~~~Sa~~~~~v 169 (184)
|+|+..... .++....+ .. .......+.+++|||+++.||
T Consensus 293 K~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV 372 (402)
T 1azs_C 293 KQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI 372 (402)
T ss_dssp CHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHH
T ss_pred ChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCH
Confidence 999843200 11111110 00 001113467889999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++|+.+.+.+.+
T Consensus 373 ~~vF~~v~~~I~~ 385 (402)
T 1azs_C 373 RRVFNDCRDIIQR 385 (402)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=153.56 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=106.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCC----CCCCCccceeeEEe----------------eCCEEEEEEeCCCcccc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSE----DMIPTVGFNMRKVT----------------KGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~----~~~~t~~~~~~~~~----------------~~~~~~~~~D~~g~~~~ 77 (184)
+..+|+++|++++|||||++++++..+.. ...++++......+ .....+.+|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 46789999999999999999998644322 12233333322211 11236999999999999
Q ss_pred hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH--------------h---
Q 029978 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--------------E--- 140 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--------------~--- 140 (184)
...+.+.++.+|++++|+|+++.-.-+.. ..+..+.. .++|+++|+||+|+.+.... +
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~-e~l~~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~ 158 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQ-EALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHH-HHHHHHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHHH
Confidence 88888888999999999999984322222 22222222 47899999999999642110 0
Q ss_pred --------HHHHHc---CCCC-------cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 141 --------DLMEQM---GLKS-------ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 141 --------~~~~~~---~~~~-------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
++.+.+ ++.. .....++++++||++|.|+++|+++|...+.
T Consensus 159 ~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 111111 1110 0134568999999999999999999987664
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-22 Score=155.30 Aligned_cols=154 Identities=21% Similarity=0.261 Sum_probs=90.2
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc--CCCC-------------------------------CCCCCCccceeeEEe
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT--GGYS-------------------------------EDMIPTVGFNMRKVT 60 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~--~~~~-------------------------------~~~~~t~~~~~~~~~ 60 (184)
...+..++|+++|++++|||||+++|+. +.+. .....|+......+.
T Consensus 38 ~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~ 117 (467)
T 1r5b_A 38 MYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE 117 (467)
T ss_dssp HSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE
T ss_pred hcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe
Confidence 3446679999999999999999999974 2211 123445555555566
Q ss_pred eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC---ChH---HHHHHHHHHhcCCCCCCCc-EEEEeeCCCc
Q 029978 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NLP---VSRSELHDLLSKPSLNGIP-LLVLGNKIDK 133 (184)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~D~ 133 (184)
..+..+.+|||||+++|...+...++.+|++++|+|+++.. +|. ..+..+... .. .++| +++|+||+|+
T Consensus 118 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~---~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 118 TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RT---QGINHLVVVINKMDE 193 (467)
T ss_dssp CSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HH---TTCSSEEEEEECTTS
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HH---cCCCEEEEEEECccC
Confidence 67789999999999999988888899999999999998751 222 112222222 11 3577 9999999999
Q ss_pred cCcC-CH---h----HHHH---Hc-CCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 134 PEAL-SK---E----DLME---QM-GLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 134 ~~~~-~~---~----~~~~---~~-~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
.... +. + ++.+ .. +... ...++++++||++|.|+++++
T Consensus 194 ~~~~~~~~~~~~i~~e~~~~l~~~~g~~~--~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 194 PSVQWSEERYKECVDKLSMFLRRVAGYNS--KTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHHHHCCCH--HHHEEEEECBTTTTBTTSSCC
T ss_pred CCccccHHHHHHHHHHHHHHHHHhcCCCc--cCCceEEeccccccccccccc
Confidence 6421 11 1 1211 11 2110 125689999999999998754
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-21 Score=140.54 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=85.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCC-CCCC-------CCCccceeeEEe----eCCEEEEEEeCCCccc-------ch
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGY-SEDM-------IPTVGFNMRKVT----KGNVTIKLWDLGGQPR-------FR 78 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~-~~~~-------~~t~~~~~~~~~----~~~~~~~~~D~~g~~~-------~~ 78 (184)
..++|+++|.+|+|||||+|++++... ...+ .+|++....... ...+.+.+|||||... +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 468999999999999999999875443 3333 455554444322 2336899999999732 22
Q ss_pred HhH-------HHhcc-------------CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 79 SMW-------ERYCR-------------AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 79 ~~~-------~~~~~-------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
... ..++. .+|+++++++.+... +......+...+.. ++|+++|+||+|+.....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence 222 23332 267899999776532 23333333333322 699999999999965432
Q ss_pred HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
.....+.+.. ......++++++||+++.|++++++.|.+.+
T Consensus 162 ~~~~~~~i~~-~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 162 CQQFKKQIMK-EIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHH-HHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHH-HHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 2222221111 0111234588899999999999999998764
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=156.71 Aligned_cols=160 Identities=17% Similarity=0.118 Sum_probs=108.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC-------CCC-----------CCCCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG-------GYS-----------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~-------~~~-----------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
+..++|+++|++++|||||+++|.+. .+. .....|+......++.....+.+|||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 45699999999999999999999853 110 112223333444566677899999999999999
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCC-H----hHHHHHcCCCCcC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALS-K----EDLMEQMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~----~~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+++....+ ...++..+.. .++| +|+|+||+|+.+... . +++.+.+......
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 88888999999999999999865433 3334333322 3578 789999999975211 1 1111111111111
Q ss_pred CCceeEEEeeeCCC--------CCHHHHHHHHHHHhh
Q 029978 153 DREVCCYMISCKNS--------TNIDTVIDWLVKHSK 181 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~--------~~v~~l~~~i~~~~~ 181 (184)
...++++++||++| .|+++|++.|.+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 23467999999999 468999999987654
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=132.81 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=98.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeCCEEEEEEeCCCccc----------chHhH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKGNVTIKLWDLGGQPR----------FRSMW 81 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~----------~~~~~ 81 (184)
+...++.+|+++|++|+|||||++++.+..+.....++.+.... .+...+ .+.+|||||... +....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 56678899999999999999999999876643333444443221 111112 578999999742 22223
Q ss_pred HHhc---cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH----hHHHHHcCCCCcCCC
Q 029978 82 ERYC---RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK----EDLMEQMGLKSITDR 154 (184)
Q Consensus 82 ~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~ 154 (184)
..++ +.++++++++|++...+... .....++.. .+.|+++|+||+|+.+.... ..+...+. ....
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~---~~~~ 171 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVL---AFNG 171 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG---GGCS
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHH---hcCC
Confidence 3333 56889999999988665432 112222221 46899999999998654211 11222221 1112
Q ss_pred ceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 155 EVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
...++++||+++.|++++++.+.+.+.+
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 4568899999999999999999887653
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-21 Score=151.76 Aligned_cols=151 Identities=15% Similarity=0.170 Sum_probs=102.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC--CCCC-------------------------------CCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG--GYSE-------------------------------DMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~ 63 (184)
+..++|+++|++++|||||+++|++. .+.. ....|+......++...
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 35689999999999999999999853 2211 13456666666677788
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC---ChH---HHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCc
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NLP---VSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEA 136 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~ 136 (184)
..+.+|||||+++|.......+..+|++++|+|+++.. +|. .....+.. ... .++| +++|+||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~-~~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALL-AFT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHH-HHH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHH-HHH---cCCCeEEEEEEccccccC
Confidence 99999999999999998899999999999999998631 111 22222222 221 3465 9999999999742
Q ss_pred C--CHhHHHHHcC----CCCcCCCceeEEEeeeCCCCCHHH
Q 029978 137 L--SKEDLMEQMG----LKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 137 ~--~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
. ..+++.+++. ........++++++||++|.|+++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 1 1112222111 000111235799999999999874
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.84 E-value=9e-20 Score=148.13 Aligned_cols=115 Identities=20% Similarity=0.199 Sum_probs=86.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc--CCC------C------------CCCCCCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT--GGY------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~--~~~------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
.+..+|+|+|++|+|||||+++++. +.+ . .....|+......+....+.+++|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 4568999999999999999999983 111 0 0334555555666777889999999999999
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
+...+..+++.+|++++|+|+++....+....| ..+.. .++|+++|+||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCcccC
Confidence 999999999999999999999988776655433 33332 37899999999999764
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-23 Score=163.72 Aligned_cols=160 Identities=19% Similarity=0.161 Sum_probs=88.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--C-----------------------------C--CCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--Y-----------------------------S--EDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--~-----------------------------~--~~~~~t~~~~~~~~~~~~ 63 (184)
+..++|+++|++++|||||+++|+... . . .....|+......+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 455899999999999999999996310 0 0 012234444444455566
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC---Ch--H-HHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCc
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NL--P-VSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEA 136 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~--~-~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~ 136 (184)
..+.+|||||+++|.......+..+|++++|+|+++.. ++ . .....+. ++.. .++| +|+|+||+|+.+.
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~-~~~~---lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAY-LLRA---LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHH-HHHH---SSCCCEEEEEECGGGGTT
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHH-HHHH---cCCCeEEEEEeccccccc
Confidence 78999999999999887788889999999999998643 22 1 1122222 2222 2465 9999999999752
Q ss_pred C--CH----hHHHHHc-CCCCcCCCceeEEEeeeCCCCCHH--------------HHHHHHHHHh
Q 029978 137 L--SK----EDLMEQM-GLKSITDREVCCYMISCKNSTNID--------------TVIDWLVKHS 180 (184)
Q Consensus 137 ~--~~----~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~--------------~l~~~i~~~~ 180 (184)
. .. .++.+.+ .........++++++||++|.|++ .|++.|...+
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 1 11 2222222 211222235689999999999998 7888887654
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=145.46 Aligned_cols=117 Identities=19% Similarity=0.123 Sum_probs=85.6
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCC--------------------CCCCccceeeEEeeCCEEEEEEeCC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSED--------------------MIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
++...+..+|+|+|++|+|||||++++++...... ...|.......+....+.+++||||
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTp 82 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAP 82 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCC
Confidence 34567788999999999999999999984322100 1113333334566778999999999
Q ss_pred CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
|++++......+++.+|++++|+|+++....+. ..++..+.. .++|+++|+||+|+.
T Consensus 83 G~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 83 GYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred CccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH----ccCCEEEEecCCchh
Confidence 999999989999999999999999877544332 334443333 368999999999997
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=134.18 Aligned_cols=175 Identities=18% Similarity=0.171 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhhccC--CceEEEEEcCCCCChHHHHHHHHcCCC-CCCCCCCcc-c---eeeE-----------------
Q 029978 3 LWEAFLNWLRSLFFK--QEMELSLIGLQNAGKTSLVNVIATGGY-SEDMIPTVG-F---NMRK----------------- 58 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~i~iiG~~g~GKStli~~l~~~~~-~~~~~~t~~-~---~~~~----------------- 58 (184)
+.+++.+.+..+-.. ...+|+++|.+|+|||||++++++..+ +.....+.. . ....
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~ 85 (315)
T 1jwy_B 6 VINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFL 85 (315)
T ss_dssp HHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEES
T ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhh
Confidence 345555555444332 457899999999999999999998765 221111000 0 0000
Q ss_pred ----------------------------------------EeeCCEEEEEEeCCCccc-------------chHhHHHhc
Q 029978 59 ----------------------------------------VTKGNVTIKLWDLGGQPR-------------FRSMWERYC 85 (184)
Q Consensus 59 ----------------------------------------~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~ 85 (184)
.......+.+|||||... +......++
T Consensus 86 ~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (315)
T 1jwy_B 86 HKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI 165 (315)
T ss_dssp SSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH
Confidence 111235799999999753 445667788
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCC--CcCCCceeEEEeee
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK--SITDREVCCYMISC 163 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa 163 (184)
..+|++++|+|..+..........+...... .+.|+++|+||+|+..... +..+.+... ......+++..+|+
T Consensus 166 ~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~v~~~sa 240 (315)
T 1jwy_B 166 KKQNAIIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGT--DAMEVLTGRVIPLTLGFIGVINRSQ 240 (315)
T ss_dssp HSTTEEEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSC--CCHHHHTTSSSCCTTCEEECCCCCH
T ss_pred cCCCeEEEEEEecCcchhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcch--HHHHHHhCCCccCCCCeEEEecCCh
Confidence 9999999999975433111111122222222 4789999999999976433 112222211 11122234445566
Q ss_pred CC---CCCHHHHHHHHHHHhhh
Q 029978 164 KN---STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~---~~~v~~l~~~i~~~~~~ 182 (184)
.+ +.|++++++.+.+.+..
T Consensus 241 ~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 241 EDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp HHHSSSCCHHHHHHHHHHHHHT
T ss_pred hhhccCCCHHHHHHHHHHHHhC
Confidence 65 78999999998877653
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-19 Score=143.29 Aligned_cols=117 Identities=22% Similarity=0.242 Sum_probs=87.8
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHc--CCCCC------------------CCCCCccceeeEEeeCCEEEEEEeCCCc
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIAT--GGYSE------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (184)
...+..+|+|+|++|+|||||+++++. +.+.. ....|+......+....+.+++|||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 345678999999999999999999984 22110 1233444455556777899999999999
Q ss_pred ccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
.++......+++.+|++++|+|+++....+... .|..+.. .++|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHHHHH----cCCCEEEEEECCCcccc
Confidence 999988999999999999999999876665543 3333333 36899999999999764
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=130.33 Aligned_cols=118 Identities=16% Similarity=0.108 Sum_probs=80.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC--CCC-CCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhc--------
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY--SED-MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYC-------- 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~--~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~-------- 85 (184)
.+.++|+++|++|+|||||++++++... ... ...|.......+...+..+.+|||||++++......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 3679999999999999999999998764 222 22244444555667888999999999876543222222
Q ss_pred -cCCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCC-CCCCcEEEEeeCCCccC
Q 029978 86 -RAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPS-LNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 86 -~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~piilv~nK~D~~~ 135 (184)
..+|++++|++++... +.... .++..+..... ....|+++|+||+|+.+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 2789999999987654 44333 44444433211 12349999999999953
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.6e-21 Score=143.35 Aligned_cols=158 Identities=18% Similarity=0.258 Sum_probs=77.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC-CCCCC--------CCCccceeeEE--eeC--CEEEEEEeCCCc-------cc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG-YSEDM--------IPTVGFNMRKV--TKG--NVTIKLWDLGGQ-------PR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~-~~~~~--------~~t~~~~~~~~--~~~--~~~~~~~D~~g~-------~~ 76 (184)
...++|+++|++|+|||||++++.+.. +.... .+|+....... ... ...+.+|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 456899999999999999999987543 22222 13443332221 122 357999999998 55
Q ss_pred chHhHH-------HhccCC-------------CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 77 FRSMWE-------RYCRAV-------------SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 77 ~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
+..+.. .+++.+ |+++++++.. ..++......+...+. .++|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 544443 444332 3455555432 3456655543333332 57899999999999764
Q ss_pred CCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 137 LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
.......+.+. .......++++++||+++.| ++.+..+.+.+.
T Consensus 190 ~ev~~~k~~i~-~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 190 KERERLKKRIL-DEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHHH-HHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 22221111111 11122345789999999998 776666665543
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=142.18 Aligned_cols=116 Identities=18% Similarity=0.109 Sum_probs=84.9
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcC--CCCC------------------CCCCCccceeeEEeeCC-------EEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATG--GYSE------------------DMIPTVGFNMRKVTKGN-------VTIKL 68 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~--~~~~------------------~~~~t~~~~~~~~~~~~-------~~~~~ 68 (184)
..+..+|+|+|+.|+|||||+++|+.. .+.. ....|+......+.+.. +.+++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 345689999999999999999999742 1110 12223333333444444 89999
Q ss_pred EeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
|||||+.+|.......++.+|++++|+|+++....+.. ..|..... .++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCEEEEEeCCCcccc
Confidence 99999999999999999999999999999986554433 23333322 47899999999998764
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-19 Score=144.20 Aligned_cols=162 Identities=17% Similarity=0.182 Sum_probs=105.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCC-CCCCCCCccc-e----------eeEE------------------------
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGY-SEDMIPTVGF-N----------MRKV------------------------ 59 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~-~~~~~~t~~~-~----------~~~~------------------------ 59 (184)
.+..++|+|+|.+|+|||||+|+|++... +....|++.. . ...+
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 45689999999999999999999997664 2233333310 0 0000
Q ss_pred --------------------eeCC----EEEEEEeCCCccc---chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHH
Q 029978 60 --------------------TKGN----VTIKLWDLGGQPR---FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHD 112 (184)
Q Consensus 60 --------------------~~~~----~~~~~~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 112 (184)
..+. ..+.+|||||... .......+++.+|++++|+|+++..+......+...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 0000 3589999999654 345566788999999999999987766554333222
Q ss_pred HhcCCCCCCCcEEEEeeCCCccCcC-----CHhH-------HHH----HcCCC----CcCCCceeEEEeeeC--------
Q 029978 113 LLSKPSLNGIPLLVLGNKIDKPEAL-----SKED-------LME----QMGLK----SITDREVCCYMISCK-------- 164 (184)
Q Consensus 113 ~~~~~~~~~~piilv~nK~D~~~~~-----~~~~-------~~~----~~~~~----~~~~~~~~~~~~Sa~-------- 164 (184)
+ .. .+.|+++|+||+|+.... ..++ +.+ .+... .......+++++||+
T Consensus 226 l-~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 I-KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp T-TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred H-Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 2 22 367899999999986542 1101 111 11100 000123469999999
Q ss_pred ------CCCCHHHHHHHHHHHhh
Q 029978 165 ------NSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 165 ------~~~~v~~l~~~i~~~~~ 181 (184)
++.|++++++.+.+.+.
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHH
T ss_pred CchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988764
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-18 Score=135.72 Aligned_cols=115 Identities=20% Similarity=0.236 Sum_probs=87.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc-------------C-----------CCCCCCCCCccceeeEEeeCCEEEEEEeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT-------------G-----------GYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~-------------~-----------~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+.-+|+|+|+.++|||||..+++. + ....+..-|+......+.+.++.++++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 4568899999999999999999971 1 012334446666777788999999999999
Q ss_pred CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
|+.+|.....+.++-+|++|+|+|+...-.-+. ...|..... .++|+++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHH----hCCceEEEEecccchhc
Confidence 999999999999999999999999987543333 233444433 47999999999998764
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=9.7e-19 Score=134.04 Aligned_cols=160 Identities=21% Similarity=0.209 Sum_probs=105.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEeeCC-EEEEEEeCCCcccc-------hHhHHHhccC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRF-------RSMWERYCRA 87 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~ 87 (184)
..-.|+++|++|+|||||++++.+... ......|.......+.... ..+.+||+||.... ..........
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 345689999999999999999986532 1222233333333344333 67999999996421 1122233567
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
++.++.++|++ .+++..+..+..++..... ....|.++|+||+|+......+++.+.+. ....+++++||+++
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi~iSA~~g 309 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTG 309 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTC
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEEEEECCCc
Confidence 99999999998 5566666555544433211 13579999999999976522223333221 12346999999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q 029978 167 TNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~~ 183 (184)
.|++++++.|.+.+.+.
T Consensus 310 ~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 310 AGLPALKEALHALVRST 326 (416)
T ss_dssp TTHHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 99999999999988653
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-19 Score=132.63 Aligned_cols=171 Identities=17% Similarity=0.209 Sum_probs=102.2
Q ss_pred hHHHHHHHHHhhccC---CceEEEEEcCCCCChHHHHHHHHcCCCCC-CC-----CCC----------------------
Q 029978 3 LWEAFLNWLRSLFFK---QEMELSLIGLQNAGKTSLVNVIATGGYSE-DM-----IPT---------------------- 51 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~---~~~~i~iiG~~g~GKStli~~l~~~~~~~-~~-----~~t---------------------- 51 (184)
+++++.+.++..-.. ...+|+++|.+|+|||||++++.+..+.+ .. .|+
T Consensus 12 ~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~ 91 (353)
T 2x2e_A 12 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKF 91 (353)
T ss_dssp HHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCccc
Confidence 456677666654332 34799999999999999999999877632 11 122
Q ss_pred ccce-------------------------eeEEeeC-CEEEEEEeCCCcc-------------cchHhHHHhccCCCEEE
Q 029978 52 VGFN-------------------------MRKVTKG-NVTIKLWDLGGQP-------------RFRSMWERYCRAVSAIV 92 (184)
Q Consensus 52 ~~~~-------------------------~~~~~~~-~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i 92 (184)
..+. ...+... ...+.+|||||.. .+......+++.++.++
T Consensus 92 tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 171 (353)
T 2x2e_A 92 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 171 (353)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEE
Confidence 0000 0111112 3679999999953 33455666776665554
Q ss_pred E-EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 Y-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+ +++++. .+..... ..++......+.|+++|+||+|+.+... ..+..+. ..........+++++||+++.|++
T Consensus 172 L~v~~a~~--~~~~~~~--~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~l~~~~~~v~~~SA~~~~~i~ 246 (353)
T 2x2e_A 172 LAVSPANS--DLANSDA--LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKK 246 (353)
T ss_dssp EEEEETTS--CGGGCHH--HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCHHHHHTTC
T ss_pred EEEecCCC--ccchhHH--HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhC-CcccccCCceEEEeCCcccccccc
Confidence 4 556553 2332221 1122222225789999999999975432 2222221 111111223578899999999999
Q ss_pred HHHHHHHH
Q 029978 171 TVIDWLVK 178 (184)
Q Consensus 171 ~l~~~i~~ 178 (184)
++++.+.+
T Consensus 247 ~l~~~l~~ 254 (353)
T 2x2e_A 247 DITAALAA 254 (353)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 99998876
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.2e-18 Score=123.39 Aligned_cols=119 Identities=13% Similarity=0.062 Sum_probs=79.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccchH-------hHHHh--
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS-------MWERY-- 84 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~-- 84 (184)
...++|+++|.+|+|||||++++++..+. .....|........+.....+.+|||||+..+.. ....+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 35799999999999999999999977652 1222233333445667788999999999865431 12222
Q ss_pred ccCCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCC-CCCCcEEEEeeCCCccCc
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPS-LNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~piilv~nK~D~~~~ 136 (184)
.+.+|++++|+|++.. ++.... .++..+..... ....|+++|+||+|+.+.
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 3478999999998653 344433 44444432211 112699999999998653
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-19 Score=133.19 Aligned_cols=150 Identities=16% Similarity=0.195 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcc-c--------------e-----------------------------
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG-F--------------N----------------------------- 55 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~-~--------------~----------------------------- 55 (184)
..|+++|++|||||||++++.+..+.+....+.. . .
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 3899999999999999999998766322211110 0 0
Q ss_pred ------------eeEEe-eCCEEEEEEeCCCcccc-------------hHhHHHhccCCCEEEEEEeCCCCCChHHHHHH
Q 029978 56 ------------MRKVT-KGNVTIKLWDLGGQPRF-------------RSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 109 (184)
Q Consensus 56 ------------~~~~~-~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 109 (184)
...+. .....+.+|||||..++ ......+++.+|+++++++..+.+.... .
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~---~ 191 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS---D 191 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC---H
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH---H
Confidence 00011 11346899999997765 5667788999999999998766443322 1
Q ss_pred HHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 110 LHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 110 ~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+..+.......+.|+++|+||+|+.+... ..+..+. .......+++++|++++.++++.++..
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEG----RSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTT----SSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcC----ccccccCCeEEEEECChHHhccCCCHH
Confidence 22233333335789999999999976422 2222221 112234568999999988877655443
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-18 Score=128.35 Aligned_cols=108 Identities=14% Similarity=0.069 Sum_probs=71.6
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 141 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 141 (184)
.++.+.++||||.... .......+|++++|+|....+....+. ......|+++|+||+|+.+....+.
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHH
Confidence 4578999999995432 234458899999999987655432221 1113469999999999975432222
Q ss_pred HHHHcC----CCC--cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 142 LMEQMG----LKS--ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 142 ~~~~~~----~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
..+.+. ... .....++++++||++|.|++++++.|.+.+.
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 222221 110 0112357999999999999999999988765
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-18 Score=139.75 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=84.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC------------CCC------CCCCCCccceeeEEee----------------C
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG------------GYS------EDMIPTVGFNMRKVTK----------------G 62 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~------------~~~------~~~~~t~~~~~~~~~~----------------~ 62 (184)
.+..+|+|+|++++|||||+++++.. .+. .....|+......+.+ .
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 45689999999999999999999853 110 0122344333333222 2
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
.+.+++|||||+.+|...+..+++.+|++++|+|+++..+++....| ..... .++|+++|+||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL-RQALG----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCeEEEEECCCcch
Confidence 68899999999999999999999999999999999998877765433 33332 4689999999999874
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=9.5e-19 Score=133.71 Aligned_cols=81 Identities=23% Similarity=0.291 Sum_probs=46.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeE--Ee----------------------eCCEEEEEEeCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRK--VT----------------------KGNVTIKLWDLGG 73 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~--~~----------------------~~~~~~~~~D~~g 73 (184)
++|+++|.+|+|||||++++++.... ..+..|....... +. .....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999976532 2222333322221 10 1136799999999
Q ss_pred cccc----hHhHH---HhccCCCEEEEEEeCCCC
Q 029978 74 QPRF----RSMWE---RYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 74 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~ 100 (184)
.... ..+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22222 346889999999999875
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=134.85 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=110.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHc--CCCC------C------------CCCCCccceeeEEeeCCEEEEEEeCCCcccchH
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT--GGYS------E------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~--~~~~------~------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
.+|+|+|+.++|||||..+++. +... . +..-|+......+.+.++.++++||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 3689999999999999999972 1110 0 012244444455677889999999999999999
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCCCC------
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLKS------ 150 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~------ 150 (184)
...+.++-+|++++|+|+...-.-+. +..|..... .++|.++++||+|....+. .+++.+.++...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence 99999999999999999987543333 233444333 4689999999999876543 122222222100
Q ss_pred --------------------------------------------------cCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 151 --------------------------------------------------ITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 151 --------------------------------------------------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
......|++..||+++.||+.|++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 001234678899999999999999998875
Q ss_pred h
Q 029978 181 K 181 (184)
Q Consensus 181 ~ 181 (184)
.
T Consensus 238 p 238 (638)
T 3j25_A 238 Y 238 (638)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.6e-17 Score=127.92 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=82.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeC------------------------------C-
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKG------------------------------N- 63 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~------------------------------~- 63 (184)
...+|+++|.+|+|||||+|++++..+. ....++........... .
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4579999999999999999999987653 22222221111000000 0
Q ss_pred ----------EEEEEEeCCCccc-----------chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC
Q 029978 64 ----------VTIKLWDLGGQPR-----------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 122 (184)
Q Consensus 64 ----------~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (184)
..+.+|||||... +......++..+|++++|+|+++.........++..+.. .+.
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~ 219 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HED 219 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCC
Confidence 2588999999764 445667778899999999999886555555555444432 468
Q ss_pred cEEEEeeCCCccCcCCHhHHHH
Q 029978 123 PLLVLGNKIDKPEALSKEDLME 144 (184)
Q Consensus 123 piilv~nK~D~~~~~~~~~~~~ 144 (184)
|+++|+||+|+.......+...
T Consensus 220 pvilVlNK~Dl~~~~el~~~~~ 241 (550)
T 2qpt_A 220 KIRVVLNKADMVETQQLMRVYG 241 (550)
T ss_dssp GEEEEEECGGGSCHHHHHHHHH
T ss_pred CEEEEEECCCccCHHHHHHHHH
Confidence 9999999999986533333333
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.2e-18 Score=124.13 Aligned_cols=155 Identities=17% Similarity=0.262 Sum_probs=74.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC-CCCCCC--------CCCccceeeE--E--eeCCEEEEEEeCCCc-------cc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG-GYSEDM--------IPTVGFNMRK--V--TKGNVTIKLWDLGGQ-------PR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~-~~~~~~--------~~t~~~~~~~--~--~~~~~~~~~~D~~g~-------~~ 76 (184)
.-.++|+++|++|+|||||++++.+. .++... .++....... + ......+.+|||+|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34589999999999999999998764 333221 1222211111 1 223478999999997 44
Q ss_pred chHhHH-------HhccC-------------CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 77 FRSMWE-------RYCRA-------------VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 77 ~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
+..... .+++. +++++++.+.+. .++..... +++.... .+.|+++|+||.|+...
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l~-~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAIH-NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHHT-TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHHH-hcCCEEEEEEeCCCCCH
Confidence 443333 33322 233444444322 23444332 1211111 35799999999999653
Q ss_pred CCH----hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 137 LSK----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 137 ~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
... +++.+... ...++++++||+++ |++++|+.+.+.+.+
T Consensus 171 ~e~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 171 KERERLKKRILDEIE-----EHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHHHHH-----HTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH-----HcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 211 11112111 12346899999999 999999998887653
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-17 Score=115.84 Aligned_cols=151 Identities=16% Similarity=0.187 Sum_probs=93.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCC--------CCCCCc--------cceeeEE------------------eeC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSE--------DMIPTV--------GFNMRKV------------------TKG 62 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~--------~~~~t~--------~~~~~~~------------------~~~ 62 (184)
.+..+|+++|.+|+|||||++++....... ++..+. +...... ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 455789999999999999999998542111 111000 0001111 123
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--CCHh
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LSKE 140 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~ 140 (184)
.+.+.+|||+|+.... ..+....+.+++|+|+.+.... . ..+... .+.|+++|+||+|+.+. ...+
T Consensus 108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~-~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--V-EKHPEI------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--H-HHCHHH------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--h-hhhhhh------hhcCCEEEEecccCCcchhhHHH
Confidence 4678899999951110 0111356889999999875421 1 111111 24789999999999643 2344
Q ss_pred HHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 141 DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+..+.+... ...++++++||++|.|++++++.+.+.+..
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 444433211 224579999999999999999999987754
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-18 Score=127.24 Aligned_cols=133 Identities=14% Similarity=0.062 Sum_probs=100.7
Q ss_pred HHHHHHHcCCCC-CCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC-ChHHHHHHHH
Q 029978 34 SLVNVIATGGYS-EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELH 111 (184)
Q Consensus 34 tli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~ 111 (184)
+|+.++..+.|. ..+.||++..+......+..+.+||+ ++++..++..+++.+|++++|+|+++++ ++..+..|+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~ 109 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLV 109 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHH
Confidence 678888888888 88889998444321111227899999 8999999999999999999999999987 6777777776
Q ss_pred HHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 112 DLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 112 ~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
.+.. .++|+++|+||+|+.+... .++..+.+.. . .++++|||++|.|++++++.+..
T Consensus 110 ~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~-----~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 110 LAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSG-----L-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT-----T-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh-----h-CcEEEEECCCCcCHHHHHHHhcC
Confidence 5543 4799999999999975422 1223333221 1 46999999999999999987753
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=120.74 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=65.2
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH--
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-- 139 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-- 139 (184)
.++.+.++||+|..... ......+|.+++|+|++..+..+.+.. .+ ...|.++|+||+|+.+....
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence 45678999999964222 334578999999999986432221111 11 24688999999999653211
Q ss_pred --hHHHHHcCCCCc--CCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 140 --EDLMEQMGLKSI--TDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 140 --~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
.++...+..... ....++++++||+++.|++++++.|.+.+.
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 122222222111 112357899999999999999999988753
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.5e-16 Score=125.42 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=81.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc--------CCC------------CCCCCCCccceeeEEee-------CCEEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT--------GGY------------SEDMIPTVGFNMRKVTK-------GNVTIKL 68 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~--------~~~------------~~~~~~t~~~~~~~~~~-------~~~~~~~ 68 (184)
..+--+|+|+|+.++|||||..+|+. ++. ..+..-|+......+.+ .++.+++
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 34557899999999999999999971 111 12223344434444433 2689999
Q ss_pred EeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
+||||+.+|.....+.++-+|++++|+|+...-..+. +..|..... .++|.++++||+|....
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANK----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----HTCCEEEEEECSSSTTC
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHH----cCCCeEEEEccccccCc
Confidence 9999999999999999999999999999987543333 233444333 47999999999998654
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-15 Score=120.98 Aligned_cols=171 Identities=15% Similarity=0.118 Sum_probs=105.0
Q ss_pred hHHHHHHHHHhhccC---CceEEEEEcCCCCChHHHHHHHHcCCC-CCCCCCCccce-----------------------
Q 029978 3 LWEAFLNWLRSLFFK---QEMELSLIGLQNAGKTSLVNVIATGGY-SEDMIPTVGFN----------------------- 55 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~---~~~~i~iiG~~g~GKStli~~l~~~~~-~~~~~~t~~~~----------------------- 55 (184)
+.+++++-++++-.. .-.+|+++|..++|||||+|++++..+ +.....++...
T Consensus 32 ~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~ 111 (772)
T 3zvr_A 32 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF 111 (772)
T ss_dssp HHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCB
T ss_pred HHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCccc
Confidence 345566656555332 347999999999999999999998766 33322211100
Q ss_pred -----------------------------eeEEeeC-CEEEEEEeCCCccc-------------chHhHHHhc-cCCCEE
Q 029978 56 -----------------------------MRKVTKG-NVTIKLWDLGGQPR-------------FRSMWERYC-RAVSAI 91 (184)
Q Consensus 56 -----------------------------~~~~~~~-~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~~~~ 91 (184)
...+... ...+.++||||... .......++ ..+|++
T Consensus 112 ~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlI 191 (772)
T 3zvr_A 112 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 191 (772)
T ss_dssp CCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEE
Confidence 0001111 12478999999433 223344444 578999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
++|+|++....-.........+. ..+.|+++|+||+|+.+... ..++.. ...........+++++||++|.|++
T Consensus 192 L~VVDAs~~~~~~d~l~ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~Gvd 266 (772)
T 3zvr_A 192 LAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKK 266 (772)
T ss_dssp EEEEETTSCSSSCHHHHHHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSE
T ss_pred EEEEcCCCCcchhHHHHHHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccch
Confidence 99999987433232212222222 24789999999999976432 122222 1111112234578899999999999
Q ss_pred HHHHHHHH
Q 029978 171 TVIDWLVK 178 (184)
Q Consensus 171 ~l~~~i~~ 178 (184)
+|++.+.+
T Consensus 267 eL~eaI~~ 274 (772)
T 3zvr_A 267 DITAALAA 274 (772)
T ss_dssp EHHHHHHH
T ss_pred hHHHHHHH
Confidence 99999886
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.66 E-value=9.4e-16 Score=115.28 Aligned_cols=156 Identities=13% Similarity=0.141 Sum_probs=92.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC------CC---CCCCCCCc------------------cceeeE--------
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG------GY---SEDMIPTV------------------GFNMRK-------- 58 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~------~~---~~~~~~t~------------------~~~~~~-------- 58 (184)
+...+...|+++|++|+|||||++.+.+. .. ..++..+. ...+..
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l 130 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHL 130 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC----
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCcccccc
Confidence 44567789999999999999999999621 10 00000000 000000
Q ss_pred -------------EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 029978 59 -------------VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 125 (184)
Q Consensus 59 -------------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii 125 (184)
....++.+.++||||...... .....+|.+++|+|.+..+.++.+.. .. .+.|.+
T Consensus 131 ~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~i 198 (341)
T 2p67_A 131 GGASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADL 198 (341)
T ss_dssp -CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH------HHHCSE
T ss_pred chhHHHHHHHHHHhhccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCE
Confidence 013467899999999755432 24588999999999975432211110 00 146889
Q ss_pred EEeeCCCccCcCCHhHHHHHc----CC-CCc-CCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 126 VLGNKIDKPEALSKEDLMEQM----GL-KSI-TDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 126 lv~nK~D~~~~~~~~~~~~~~----~~-~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+|+||+|+.+........+.+ +. ... .....+++++||++|.|++++++.|.+.+.
T Consensus 199 vv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 199 IVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 999999997542222221121 11 100 111347899999999999999999988654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-16 Score=121.95 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=70.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC-CCC-------CCCccceeeE--E--eeCCEEEEEEeCCCcccch-------
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS-EDM-------IPTVGFNMRK--V--TKGNVTIKLWDLGGQPRFR------- 78 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~-~~~-------~~t~~~~~~~--~--~~~~~~~~~~D~~g~~~~~------- 78 (184)
-.++|+++|++|+|||||++.+.+..++ ... .+|....... + ......+.+||++|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 3478999999999999999999976653 111 1222211111 1 1223578999999976531
Q ss_pred Hh------------------HHHhccCCCEEEEEEeCCCC-CChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 79 SM------------------WERYCRAVSAIVYVVDAADY-DNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 79 ~~------------------~~~~~~~~~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
.. ...++..+++.++++....- .++.... .++..+. .++|+|+|+||+|+.....
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHHH
Confidence 11 01223444443444444322 3455544 3444432 3689999999999965422
Q ss_pred HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
.....+.+. .......++++++|++++.++++++..+...+
T Consensus 185 v~~~k~~i~-~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 185 CQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHH-HHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHH-HHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 111111110 00111234588899999999998887776543
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-15 Score=111.76 Aligned_cols=81 Identities=25% Similarity=0.282 Sum_probs=56.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCCccceeeEEeeC-----------------CEEEEEEeCCCcccchH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSE--DMIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~~~~ 79 (184)
.++|+++|.+|+|||||++++++..+.. .+..|.......+... +..+.+|||||..+...
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 3689999999999999999999866432 2233444333333322 25799999999876532
Q ss_pred -------hHHHhccCCCEEEEEEeCCC
Q 029978 80 -------MWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 80 -------~~~~~~~~~~~~i~v~d~~~ 99 (184)
.....++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23345789999999999986
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-16 Score=113.40 Aligned_cols=117 Identities=15% Similarity=-0.022 Sum_probs=69.4
Q ss_pred EEEEEEeCCCcccchHh------HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC
Q 029978 64 VTIKLWDLGGQPRFRSM------WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 137 (184)
+.+.+|||||+...... ....+.. +++++++|........................+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 57999999998764322 1124455 8888899886544433322211111110011358999999999997542
Q ss_pred CHhHHHHHcCC-------------------------CCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 138 SKEDLMEQMGL-------------------------KSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 138 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
..+++.+.+.. ........+++++||+++.|+++++++|.+.+.
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 22111111100 000011236899999999999999999998765
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-15 Score=103.13 Aligned_cols=173 Identities=18% Similarity=0.219 Sum_probs=113.6
Q ss_pred HHHHhhccCCceEEEEEcCC-CCChHHHHHHHHcCCCCC-------CCCCCccceee-------EEe-----e-------
Q 029978 9 NWLRSLFFKQEMELSLIGLQ-NAGKTSLVNVIATGGYSE-------DMIPTVGFNMR-------KVT-----K------- 61 (184)
Q Consensus 9 ~~~~~~~~~~~~~i~iiG~~-g~GKStli~~l~~~~~~~-------~~~~t~~~~~~-------~~~-----~------- 61 (184)
+|++|+..+.+.++++.||. ..=..+|+.++....... .....++-... .++ .
T Consensus 6 ~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~ 85 (227)
T 3l82_B 6 SFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERD 85 (227)
T ss_dssp CSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC------
T ss_pred HHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhh
Confidence 45678888899999999964 233568999988533111 00111111110 000 0
Q ss_pred -----C---CEEEEEEeCC------CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHH---HHHhcCCC-CCCCc
Q 029978 62 -----G---NVTIKLWDLG------GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSEL---HDLLSKPS-LNGIP 123 (184)
Q Consensus 62 -----~---~~~~~~~D~~------g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~p 123 (184)
+ -.++-...+| ||..++..|..|+..+|++|||+|+++.+.+. .+..+ ..++.... ..++|
T Consensus 86 ~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gap 164 (227)
T 3l82_B 86 RAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRP 164 (227)
T ss_dssp -------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSC
T ss_pred hhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCe
Confidence 0 0122233343 78889999999999999999999999886554 44444 33444322 36899
Q ss_pred EEEEeeCC-CccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 124 LLVLGNKI-DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 124 iilv~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
++|.+||. |++....+.++.+.+++... .+.+.+..|||++|.|+.+-++|+.+.+..+
T Consensus 165 LLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 165 LLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp EEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred EEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 99999995 78888899999999998776 4788999999999999999999999888754
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=106.91 Aligned_cols=153 Identities=14% Similarity=0.192 Sum_probs=85.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee----------------eEEeeC------------------
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM----------------RKVTKG------------------ 62 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~----------------~~~~~~------------------ 62 (184)
.+..+|+++|.+|||||||++++....+.....+++..+. ..++.+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 4568999999999999999999997654433333332111 111100
Q ss_pred --CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--CC
Q 029978 63 --NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LS 138 (184)
Q Consensus 63 --~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~ 138 (184)
...+.++|++|.-... ..+-...+..+.++|.......... .... ...|.++|+||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~~---~~~~------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIEK---HPGI------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTTT---CHHH------HTTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHhh---hhhH------hhcCCEEEEeccccCchhHHH
Confidence 0134444554421100 0111223445556664322111100 0111 13678999999998653 23
Q ss_pred HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhhcC
Q 029978 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 184 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 184 (184)
.++..+.+.. ....++++++||++|.|++++++.+.+.+.+.+
T Consensus 184 ~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 226 (226)
T 2hf9_A 184 IKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKEVK 226 (226)
T ss_dssp HHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHhhC
Confidence 3433333221 012347999999999999999999998887643
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-14 Score=108.73 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCCEEEEEEeCCCcccc-------hHhHHHhccCCCE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~~~ 90 (184)
.+|+|+|.||||||||+|++++.... ..+..|.......+...+..+.++||||.... .......++.+|+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 58999999999999999999975532 33455666666677788899999999995321 1233455688999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcC-CCCCCCcEEEEeeCCCc
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSK-PSLNGIPLLVLGNKIDK 133 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~ 133 (184)
+++|+|++++. ........++... ......|.+++.||.|.
T Consensus 153 il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 153 LFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred cccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 99999998642 2222111222111 11134566677777775
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-14 Score=106.96 Aligned_cols=157 Identities=11% Similarity=0.111 Sum_probs=92.5
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc------CCCC---CCCCCC------------ccc-----eeeE--------
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT------GGYS---EDMIPT------------VGF-----NMRK-------- 58 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~------~~~~---~~~~~t------------~~~-----~~~~-------- 58 (184)
++...+...++|+|++|+|||||++.+.+ +... .+...+ +++ ....
T Consensus 49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 128 (337)
T 2qm8_A 49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGT 128 (337)
T ss_dssp GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSS
T ss_pred CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCccccc
Confidence 45567788999999999999999999972 2210 000000 000 0000
Q ss_pred --------------EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 029978 59 --------------VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 124 (184)
Q Consensus 59 --------------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 124 (184)
.....+.+.++||+|...... .....+|.+++++|....+..+.+... ....|.
T Consensus 129 l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---------i~~~~~ 196 (337)
T 2qm8_A 129 LGGVAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---------IFELAD 196 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---------HHHHCS
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---------Hhcccc
Confidence 112467899999999754322 234679999999998643221111000 013466
Q ss_pred EEEeeCCCccCcCC-----HhHHHHHcCCCCcC--CCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 125 LVLGNKIDKPEALS-----KEDLMEQMGLKSIT--DREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 125 ilv~nK~D~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
++|+||+|+..... .+++...+.+.... ...++++++||+++.|+++|++.|.+...
T Consensus 197 ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 197 MIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 88889999754211 12222222221110 11346899999999999999999988754
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.54 E-value=9.6e-14 Score=104.93 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=55.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEe---------------------eCCEEEEEEeCCCccc
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVT---------------------KGNVTIKLWDLGGQPR 76 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~---------------------~~~~~~~~~D~~g~~~ 76 (184)
++|+++|.+|+|||||++++.+.... ..+..|+........ ..+..+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57899999999999999999875421 112223332222221 1245799999999765
Q ss_pred c-------hHhHHHhccCCCEEEEEEeCCC
Q 029978 77 F-------RSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 77 ~-------~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
. .......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3 2334456789999999999986
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-14 Score=101.03 Aligned_cols=111 Identities=18% Similarity=0.260 Sum_probs=88.5
Q ss_pred CCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHH---HHhcCCC-CCCCcEEEEeeC-CCccCcCCHhHHHHH
Q 029978 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELH---DLLSKPS-LNGIPLLVLGNK-IDKPEALSKEDLMEQ 145 (184)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~piilv~nK-~D~~~~~~~~~~~~~ 145 (184)
.+||+..+..|..|+..+|++|+|+|+++.+.+. ....+. .++.... ..++|++|.+|| .|+.......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 3578899999999999999999999999988654 333332 3333211 257999999997 589888899999999
Q ss_pred cCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 146 MGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 146 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
+++... .+.+.+..|||++|.|+.+-++++.+.+..+
T Consensus 273 L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 998766 4778899999999999999999999988754
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-12 Score=97.36 Aligned_cols=87 Identities=21% Similarity=0.313 Sum_probs=51.5
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCC--CCCCccceeeEEeeC-----------------CEEEEEEeCCCccc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSED--MIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPR 76 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~--~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~ 76 (184)
....++|+++|.+|+|||||++++.+...... +..|.......+... +..+.+|||||...
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 35678999999999999999999997654322 233444333332221 34699999999876
Q ss_pred chH-------hHHHhccCCCEEEEEEeCCCCCC
Q 029978 77 FRS-------MWERYCRAVSAIVYVVDAADYDN 102 (184)
Q Consensus 77 ~~~-------~~~~~~~~~~~~i~v~d~~~~~~ 102 (184)
... ....+++.+|++++|+|+++.++
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 443 45677899999999999986543
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.5e-12 Score=92.85 Aligned_cols=96 Identities=18% Similarity=0.115 Sum_probs=70.4
Q ss_pred cccchHhHHHhccCCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCCC
Q 029978 74 QPRFRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLK 149 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~ 149 (184)
++++..+...+++.+|++++|+|+++++ ++..+..|+..+.. .++|+++|+||+|+.+... .++..+.+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~-- 139 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYR-- 139 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHH--
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHH--
Confidence 6666666677899999999999999886 78777777665543 4799999999999975421 122222211
Q ss_pred CcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 150 SITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
....+++++||++|.|++++++.+..
T Consensus 140 ---~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 140 ---DAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp ---HTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred ---HCCCeEEEEECCCCCCHHHHHhhccC
Confidence 11246999999999999999987653
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.1e-11 Score=92.54 Aligned_cols=154 Identities=16% Similarity=0.118 Sum_probs=87.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHH------cCCCC----CCCCCCc-----------cceeeE-----------------E
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA------TGGYS----EDMIPTV-----------GFNMRK-----------------V 59 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~------~~~~~----~~~~~t~-----------~~~~~~-----------------~ 59 (184)
+...|+++|.+||||||+++.+. +.... ..+.+.. +..... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998 22210 0001100 000000 1
Q ss_pred eeCCEEEEEEeCCCcccc----hHhHHHh--ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCC
Q 029978 60 TKGNVTIKLWDLGGQPRF----RSMWERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKID 132 (184)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~----~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 132 (184)
....+.+.++||||.... ....... ...+|.+++|+|+....... .....+.. ..|+ .+|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~-----~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD-----KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH-----HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh-----hcCceEEEEeCCc
Confidence 115678999999996532 1111111 22689999999998754311 22222211 2574 89999999
Q ss_pred ccCcCC-HhHHHHHcCCCC-------cC---CCceeEEEeeeCCCCC-HHHHHHHHHHH
Q 029978 133 KPEALS-KEDLMEQMGLKS-------IT---DREVCCYMISCKNSTN-IDTVIDWLVKH 179 (184)
Q Consensus 133 ~~~~~~-~~~~~~~~~~~~-------~~---~~~~~~~~~Sa~~~~~-v~~l~~~i~~~ 179 (184)
...... ...+.+..+... .. ....+..++|+..|.| +++|++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 875432 223333333211 00 0122345689999999 99999999765
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=5.7e-10 Score=84.93 Aligned_cols=83 Identities=23% Similarity=0.356 Sum_probs=58.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC-CC--CCCCCccceeeEEeeCC-----------------EEEEEEeCCCccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY-SE--DMIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~-~~--~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~ 76 (184)
..+.+++++|++|+|||||++.+++... .. .+..|.......+...+ ..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 5578999999999999999999998654 22 22334444433333322 4689999999432
Q ss_pred -------chHhHHHhccCCCEEEEEEeCCC
Q 029978 77 -------FRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 77 -------~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+.......++.+|+++.|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33455667789999999999875
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-09 Score=82.62 Aligned_cols=157 Identities=15% Similarity=0.245 Sum_probs=85.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCC------CCccceeeEEeeCCE-EEEEEeCCCcccc----hHhHHH-h
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMI------PTVGFNMRKVTKGNV-TIKLWDLGGQPRF----RSMWER-Y 84 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~------~t~~~~~~~~~~~~~-~~~~~D~~g~~~~----~~~~~~-~ 84 (184)
.....++++|++|+|||||++.+.+-..+..-. ++.... ..+....+ .+.++|++|.... ...... .
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~-~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~ 145 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER-HPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMK 145 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC-EEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeE-EeccccccCCeeehHhhcccchHHHHHHHHHHcC
Confidence 345689999999999999999998632221110 110011 11222222 5788999985321 111111 1
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHH-HHHhcCCCCCCCcEEEEeeCCCcc---------CcCCHhHHHHHcCCCC----
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSEL-HDLLSKPSLNGIPLLVLGNKIDKP---------EALSKEDLMEQMGLKS---- 150 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~piilv~nK~D~~---------~~~~~~~~~~~~~~~~---- 150 (184)
+...+..++ ++... ++..+..+ ..+.. .+.|+++|.||.|+. +....+++.+.+....
T Consensus 146 L~~~~~~~~-lS~G~---~~kqrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 146 FYEYDFFII-ISATR---FKKNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp GGGCSEEEE-EESSC---CCHHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCccCCeEE-eCCCC---ccHHHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 233455554 66642 12222222 23332 358999999998874 1122333333222110
Q ss_pred -cC-CCceeEEEeee--CCCCCHHHHHHHHHHHhhh
Q 029978 151 -IT-DREVCCYMISC--KNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 151 -~~-~~~~~~~~~Sa--~~~~~v~~l~~~i~~~~~~ 182 (184)
.. .....++.+|+ .++.|++++.+.+.+.+.+
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 00 11235788999 6777899999999887754
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.8e-11 Score=90.07 Aligned_cols=124 Identities=11% Similarity=0.048 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcC------CCCC--CCCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATG------GYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~------~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
.+.+...+..+. +..+++++|.+|+|||||+|++.+. .... .+..|.... .+... ..+.++||||..
T Consensus 149 i~~L~~~I~~~~--~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~-~~~~liDtPG~~ 223 (369)
T 3ec1_A 149 MAKVMEAINRYR--EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMI--EIPLE-SGATLYDTPGII 223 (369)
T ss_dssp HHHHHHHHHHHH--TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEE--EEECS-TTCEEEECCSCC
T ss_pred HHHHHHHHHhhc--ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeE--EEEeC-CCeEEEeCCCcC
Confidence 345555554432 3568999999999999999999964 1211 122232222 22222 137899999953
Q ss_pred cch--------HhHHHhc--cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC
Q 029978 76 RFR--------SMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137 (184)
Q Consensus 76 ~~~--------~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 137 (184)
... ......+ ...+.++++++....-.+..+ .........+.|+++++||.|.....
T Consensus 224 ~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l-----~~l~~l~~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 224 NHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGL-----ARLDYIKGGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp CCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTT-----EEEEEEESSSEEEEEEECTTSCEEEE
T ss_pred cHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCE-----EEEEEccCCCceEEEEecCCcccccc
Confidence 211 1222232 567889999987421000110 00112223568999999999987543
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.01 E-value=9.8e-11 Score=88.77 Aligned_cols=125 Identities=10% Similarity=0.019 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCC---------CCCCCCCccceeeEEeeCCEEEEEEeCCCc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGY---------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~---------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (184)
.+.+..++..+. +..+++++|.+|+|||||+|++.+... ...+..|.......+.. .+.++||||.
T Consensus 147 i~~L~~~l~~~~--~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~ 221 (368)
T 3h2y_A 147 IAELADAIEYYR--GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGI 221 (368)
T ss_dssp HHHHHHHHHHHH--TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCB
T ss_pred HHHHHhhhhhhc--ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCc
Confidence 345555554432 457899999999999999999986421 11122222222222211 2789999995
Q ss_pred ccch--------HhHHHh--ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 75 PRFR--------SMWERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 75 ~~~~--------~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
.... ...... ....+.++++++....-....+ .........+.|+++|+||+|......
T Consensus 222 ~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l-----~~~d~l~~~~~~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 222 INHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGL-----ARFDYVSGGRRAFTCHFSNRLTIHRTK 290 (368)
T ss_dssp CCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTT-----EEEEEEESSSEEEEEEECTTSCEEEEE
T ss_pred CcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcce-----EEEEEecCCCceEEEEecCcccccccc
Confidence 3211 112222 2556788888887321000110 001122235689999999999976543
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-10 Score=86.85 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=67.0
Q ss_pred CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCC--C
Q 029978 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGL--K 149 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~--~ 149 (184)
.++.|......+.+.++++++|+|+++++ ..|...+.+.. .++|+++|+||+|+.+... .++..+.+.. .
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 36788888899999999999999998732 22222222221 3789999999999976432 2222211100 0
Q ss_pred CcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 150 SITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
.......+++++||++|.|++++++.+.+...
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 00111125899999999999999999977543
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.3e-09 Score=81.38 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=24.6
Q ss_pred hhccCCceE--EEEEcCCCCChHHHHHHHHcCC
Q 029978 13 SLFFKQEME--LSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 13 ~~~~~~~~~--i~iiG~~g~GKStli~~l~~~~ 43 (184)
++..+++.. ++|+|++|+|||||++.+.+..
T Consensus 34 sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred ceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 345555544 9999999999999999998754
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.3e-09 Score=76.50 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=60.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCC---------CCCCCcc-ceeeEE---eeCCEEEEEEeCCCcccc--------
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSE---------DMIPTVG-FNMRKV---TKGNVTIKLWDLGGQPRF-------- 77 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~---------~~~~t~~-~~~~~~---~~~~~~~~~~D~~g~~~~-------- 77 (184)
.++++++|++|+|||||++.+.+...+. ....+.. .....+ ..-...+.++|++|....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5789999999999999999998532211 0111111 111111 111236889999973210
Q ss_pred --hH----hH----HH----------hccCCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 78 --RS----MW----ER----------YCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 78 --~~----~~----~~----------~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
.. .. .. .+..+++.++++|-... +..... ..+..+.. . +++++|.||+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~~----~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLSK----V-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHHT----T-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHHh----c-CcEEEEEeccccCCH
Confidence 00 00 00 12235788888886532 222222 22233322 2 899999999998764
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.9e-10 Score=85.00 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=67.1
Q ss_pred cccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcC--CCC
Q 029978 74 QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMG--LKS 150 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~--~~~ 150 (184)
++.|+.....+.+.++++++|+|++++++ .....+.... .+.|+++|+||+|+.+... .++..+.+. ...
T Consensus 58 ~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~ 130 (369)
T 3ec1_A 58 DDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEE 130 (369)
T ss_dssp -CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHH
Confidence 78899988888899999999999998653 1111112221 3689999999999976532 222222111 000
Q ss_pred cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 151 ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
......+++++||++|.|++++++.+.+...
T Consensus 131 ~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 131 LGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 1111136899999999999999999987654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.85 E-value=7.1e-09 Score=75.81 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=68.5
Q ss_pred EEeCCCcc-cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHc
Q 029978 68 LWDLGGQP-RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM 146 (184)
Q Consensus 68 ~~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 146 (184)
+-..||+. +........+..+|+++.|+|+.++.+.... .+..+. .++|.++|+||+|+.+....+...+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 34568886 4566778889999999999999988766431 122222 468999999999997642222223322
Q ss_pred CCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 147 GLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 147 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
. ....+++++||+++.|++++++.+.+.+.
T Consensus 76 ~-----~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 E-----NQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp H-----TTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred H-----hcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 1 11236899999999999999998887764
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.70 E-value=4e-08 Score=71.84 Aligned_cols=56 Identities=27% Similarity=0.364 Sum_probs=35.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
...++++++|.+|+|||||+|++.+.... ..+..|........ + ..+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~--~-~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV--G-KELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE--T-TTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe--C-CCEEEEECcCcC
Confidence 45689999999999999999999965421 11222332222222 2 258899999964
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-09 Score=83.54 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=82.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcC------CC---CCC-C---------------------C--CCccc-ee-eE--Eee
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATG------GY---SED-M---------------------I--PTVGF-NM-RK--VTK 61 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~------~~---~~~-~---------------------~--~t~~~-~~-~~--~~~ 61 (184)
...|+++|++|+||||++..+... .. ..+ + . .+... .. .. ...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998731 10 000 0 0 00000 00 00 001
Q ss_pred CCEEEEEEeCCCcccch----HhHHHh--ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC-c-EEEEeeCCCc
Q 029978 62 GNVTIKLWDLGGQPRFR----SMWERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI-P-LLVLGNKIDK 133 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-iilv~nK~D~ 133 (184)
..+.+.++||||..... ...... +..+|.+++|+|+.... ........+. ... | ..+|+||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~-----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK-----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH-----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh-----hcccCCeEEEEeCCCC
Confidence 45678999999965432 111111 23589999999986532 2222222222 124 5 8899999998
Q ss_pred cCcCC-HhHHHHHcCCCCc----------CCCceeEEEeeeCCCCC-HHHHHHHHHHHh
Q 029978 134 PEALS-KEDLMEQMGLKSI----------TDREVCCYMISCKNSTN-IDTVIDWLVKHS 180 (184)
Q Consensus 134 ~~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~-v~~l~~~i~~~~ 180 (184)
..... ...+....+.... .....+..++|+..|.| +..+++.+.+.+
T Consensus 251 ~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~ 309 (432)
T 2v3c_C 251 SAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV 309 (432)
T ss_dssp CSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS
T ss_pred ccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 54211 2223333322100 01122334578888888 777776665443
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-08 Score=73.50 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
++++++|.+|+|||||+|++.+..... .+..|.... .+.. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe-CCCEEEEECCCccc
Confidence 699999999999999999999655421 111222221 1221 23688999999653
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=4.3e-07 Score=72.49 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=42.2
Q ss_pred HHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCC-CCCCCCccceeeEE-------eeCCEEEEEEeCCCcc
Q 029978 8 LNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYS-EDMIPTVGFNMRKV-------TKGNVTIKLWDLGGQP 75 (184)
Q Consensus 8 ~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~-~~~~~t~~~~~~~~-------~~~~~~~~~~D~~g~~ 75 (184)
+..+.++ ..+...|+|+|.+|+|||||+|++++.... .....|.+...... ...+..+.++||||..
T Consensus 28 l~~L~~i-~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 28 LKILSAI-TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp HHHHHTC-CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred HHHHHhc-cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 3444443 355688999999999999999999976532 22211212111111 1245689999999954
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.49 E-value=8.8e-07 Score=71.33 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~ 43 (184)
.++|+|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 38999999999999999998754
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-07 Score=73.32 Aligned_cols=111 Identities=15% Similarity=0.147 Sum_probs=61.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc------CCC---C-CCCCC-----------CccceeeE-----------------Ee
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT------GGY---S-EDMIP-----------TVGFNMRK-----------------VT 60 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~------~~~---~-~~~~~-----------t~~~~~~~-----------------~~ 60 (184)
+..|+++|++|+||||++..+.. ... . ..+.+ ..+..... ..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999998872 110 0 00000 00000000 01
Q ss_pred eCCEEEEEEeCCCcccch----HhHH--HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 61 KGNVTIKLWDLGGQPRFR----SMWE--RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~----~~~~--~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
..++.+.++||+|..... .... .....+|.+++|+|+.... ........+... -.+..+|.||+|..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---~a~~~a~~f~~~----~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---QAYNQALAFKEA----TPIGSIIVTKLDGS 252 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHHS----CTTEEEEEECCSSC
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---hHHHHHHHHHhh----CCCeEEEEECCCCc
Confidence 134789999999953221 1111 1123578999999997632 222222333222 13556899999986
Q ss_pred Cc
Q 029978 135 EA 136 (184)
Q Consensus 135 ~~ 136 (184)
..
T Consensus 253 ~~ 254 (443)
T 3dm5_A 253 AK 254 (443)
T ss_dssp SS
T ss_pred cc
Confidence 43
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-07 Score=68.32 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=60.1
Q ss_pred CCCcccc-hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCC
Q 029978 71 LGGQPRF-RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK 149 (184)
Q Consensus 71 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~ 149 (184)
.||+... .......+..+|+++.|+|+.++.+..... + .. . ++|.++|+||+|+.+....+...+.+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l-~l-l--~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----V-DF-S--RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----S-CC-T--TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----H-Hh-c--CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 4777643 456778889999999999999876554321 1 11 1 7899999999999764222222222211
Q ss_pred CcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 150 SITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
...++ .+||+++.|++++++.+.+
T Consensus 74 ----~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 ----QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ----TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ----cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 12246 8999999999999887654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.19 E-value=7.3e-07 Score=68.69 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=38.2
Q ss_pred CEEEEEEeCCCccc------chHhHHHh--ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 63 NVTIKLWDLGGQPR------FRSMWERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~g~~~------~~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
.+.+.++||||... ........ ....+.+++|+|+............+.+. -.+..+|+||+|..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMDGT 251 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGGGC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccccc
Confidence 56788999999533 11111111 12468999999997643222222222221 13567899999975
Q ss_pred C
Q 029978 135 E 135 (184)
Q Consensus 135 ~ 135 (184)
.
T Consensus 252 a 252 (433)
T 3kl4_A 252 A 252 (433)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.06 E-value=3.3e-06 Score=62.09 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=40.4
Q ss_pred CCEEEEEEeCCCccc--chH-hHH-----HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCC
Q 029978 62 GNVTIKLWDLGGQPR--FRS-MWE-----RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKID 132 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 132 (184)
..+.+.++||||... ... ... .....+|.+++|+|+... .........+.. ..| ..+|.||+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 567899999999765 321 111 123468999999998642 222222233322 245 678899999
Q ss_pred ccC
Q 029978 133 KPE 135 (184)
Q Consensus 133 ~~~ 135 (184)
...
T Consensus 251 ~~~ 253 (297)
T 1j8m_F 251 GTA 253 (297)
T ss_dssp GCT
T ss_pred CCc
Confidence 753
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.3e-06 Score=64.50 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=57.0
Q ss_pred HHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC----HhHHHHHcCCCCcCCCcee
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS----KEDLMEQMGLKSITDREVC 157 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~ 157 (184)
+..+..+|.+++|+|+.++..-......+...... .++|.++|+||+|+.+... .+++.+.+.. ...+
T Consensus 81 R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~-----~g~~ 152 (307)
T 1t9h_A 81 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN-----IGYD 152 (307)
T ss_dssp TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH-----HTCC
T ss_pred HHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHh-----CCCe
Confidence 34678899999999999776544443433333332 4689999999999976522 2333333211 1125
Q ss_pred EEEeeeCCCCCHHHHHHH
Q 029978 158 CYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 158 ~~~~Sa~~~~~v~~l~~~ 175 (184)
++.+||+++.|+++|++.
T Consensus 153 v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EEECCHHHHTTCTTTGGG
T ss_pred EEEEecCCCCCHHHHHhh
Confidence 889999999998877654
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.9e-06 Score=57.49 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=27.4
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+++...+... .+++..|+|+|++|||||||++.+.+
T Consensus 9 ~~~~~~~~~~-~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 9 QGVLERLDPR-QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHSCTT-CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444433 46678999999999999999998874
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.98 E-value=3e-06 Score=63.13 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++--++++|++|+||||+++.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356788999999999999999987
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.5e-06 Score=60.29 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=20.6
Q ss_pred CchHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHH-cC
Q 029978 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIA-TG 42 (184)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~-~~ 42 (184)
||-++.--+.--++...++-.++|+|++|||||||++.+. +.
T Consensus 9 ~~~~~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 9 MGTLEAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp -------------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred cchhhhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4444444444456667777889999999999999999998 53
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=9.7e-06 Score=54.97 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++....+..++...++-.++++|++|+|||||++.+.+
T Consensus 23 ~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 23 LLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34555666777777778899999999999999999874
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.87 E-value=2.2e-05 Score=54.30 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+++..++.+....++..|+|+|++||||||+++.+.+
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45677777776667778899999999999999998873
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.85 E-value=9.1e-06 Score=55.23 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+++++|++|+|||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.83 E-value=2.7e-05 Score=51.84 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=27.7
Q ss_pred HHhhccCCceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 11 LRSLFFKQEMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 11 ~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
.-++..+++-.++++|++|+|||||++.+.+..
T Consensus 25 ~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 25 LLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345666888889999999999999999998644
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.4e-05 Score=55.25 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++-.++++|++|||||||++.+.+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 45667899999999999999999853
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.80 E-value=8e-05 Score=57.55 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=39.0
Q ss_pred CCEEEEEEeCCCcccch-HhHH-----HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCcc
Q 029978 62 GNVTIKLWDLGGQPRFR-SMWE-----RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKP 134 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~ 134 (184)
..+.+.++||||..... .... .....++.+++|+|+....... .....+.. ..+ .-+|.||+|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~-----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE-----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH-----HSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc-----cCCCeEEEEecCCCC
Confidence 46789999999964431 1111 1234678999999987543322 22222211 233 24689999985
Q ss_pred Cc
Q 029978 135 EA 136 (184)
Q Consensus 135 ~~ 136 (184)
..
T Consensus 254 ~~ 255 (433)
T 2xxa_A 254 AR 255 (433)
T ss_dssp SC
T ss_pred cc
Confidence 43
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.80 E-value=9.3e-06 Score=56.97 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=22.5
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+.
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 455567778999999999999999999863
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=97.74 E-value=4.8e-06 Score=65.08 Aligned_cols=85 Identities=18% Similarity=0.206 Sum_probs=48.7
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCccc--chHhH-------
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPR--FRSMW------- 81 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~--~~~~~------- 81 (184)
+...+..|+++|.+|+||||+.+++...-.. ...++..+... ..........+||..|.+. .+..+
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~ 113 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALND 113 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999742110 01111111100 0001113346788888732 23222
Q ss_pred -HHhccCCCEEEEEEeCCCC
Q 029978 82 -ERYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 82 -~~~~~~~~~~i~v~d~~~~ 100 (184)
..++...++.++|+|.++.
T Consensus 114 ~~~~l~~~~G~~vV~D~tn~ 133 (469)
T 1bif_A 114 VRKFLSEEGGHVAVFDATNT 133 (469)
T ss_dssp HHHHHHTTCCSEEEEESCCC
T ss_pred HHHHHHhCCCCEEEEeCCCC
Confidence 4455566788999999986
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=1.9e-05 Score=56.05 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=23.7
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|||||||++.+.+
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4456667789999999999999999874
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.73 E-value=2.6e-05 Score=53.24 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=23.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
..++-.++++|++||||||+++.+.+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 356678999999999999999999853
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.72 E-value=6.3e-05 Score=56.57 Aligned_cols=84 Identities=14% Similarity=0.048 Sum_probs=51.8
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCCCCcCCCceeEEE
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
....+|.+++|.+. ++..-......+...... .++|.++|+||+|+.+... .+++...+. ....+++.
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~-----~~G~~v~~ 197 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR-----NIGYRVLM 197 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHH-----TTTCCEEE
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHH-----hCCCcEEE
Confidence 35778998887665 455433333333322221 3578899999999976532 112222221 12335899
Q ss_pred eeeCCCCCHHHHHHHH
Q 029978 161 ISCKNSTNIDTVIDWL 176 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i 176 (184)
+||.++.|++++...+
T Consensus 198 ~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 198 VSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred EecCCCcCHHHHHHhc
Confidence 9999999999987654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=1.6e-05 Score=54.85 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++-.++|+|++|+|||||++.+.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999999975
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.5e-05 Score=53.65 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=22.2
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...++--++++|++|||||||++.+.
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 445667778999999999999999644
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.70 E-value=2.8e-05 Score=53.63 Aligned_cols=31 Identities=26% Similarity=0.543 Sum_probs=23.2
Q ss_pred HHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 11 LRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 11 ~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+++..++-.++|+|++|+|||||++.+..
T Consensus 11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 11 RENLYFQGRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp -----CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cccCCCCCCCEEEEECcCCCCHHHHHHHHHh
Confidence 3445556677889999999999999999984
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=2.6e-05 Score=55.61 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=23.1
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...++..|+|+|++|||||||++.+.+
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 56667888999999999999999999875
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=2.6e-05 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+-.++|+|++|||||||++.+.+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999985
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=5.4e-05 Score=58.57 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+-.-|+|+|++++|||||+|.+++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 345578999999999999999985
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.68 E-value=2.3e-05 Score=55.28 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=23.1
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445566789999999999999999874
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=5.7e-05 Score=55.89 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..++..|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 56778899999999999999999874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.66 E-value=2.1e-05 Score=55.95 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=23.5
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445666789999999999999999974
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.66 E-value=2.1e-05 Score=56.73 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.7
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|||||||++.+.+
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4455666789999999999999999974
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.66 E-value=2.7e-05 Score=54.05 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=22.2
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
...++--++|+|++|||||||++.+.+-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4466677899999999999999999853
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.64 E-value=2e-05 Score=57.29 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=23.3
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|||||||++.+.+
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 3445666789999999999999999974
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.64 E-value=8e-05 Score=54.51 Aligned_cols=36 Identities=19% Similarity=0.085 Sum_probs=26.8
Q ss_pred HHHHHHHHhh---ccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 5 EAFLNWLRSL---FFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 5 ~~~~~~~~~~---~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+.+..++..+ ..++...|+|+|++|||||||++.+.
T Consensus 14 ~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 14 EFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp HHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3444444443 34567889999999999999998876
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.64 E-value=3.5e-05 Score=54.95 Aligned_cols=28 Identities=11% Similarity=0.304 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4456677899999999999999999984
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.2e-05 Score=56.20 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=23.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+..+++-.++|+|++|+|||||++.+.+-
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34456667899999999999999999743
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.5e-05 Score=56.39 Aligned_cols=28 Identities=14% Similarity=0.395 Sum_probs=23.5
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 4445666789999999999999999874
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=3.4e-05 Score=53.55 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+++..|+|+|++|||||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998874
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.62 E-value=3.2e-05 Score=55.91 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4445666789999999999999999985
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.62 E-value=2.4e-05 Score=55.33 Aligned_cols=29 Identities=31% Similarity=0.373 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33455667899999999999999999753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.62 E-value=3.1e-05 Score=56.06 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=24.3
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44566677899999999999999999853
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.61 E-value=2e-05 Score=55.19 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=23.1
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445566689999999999999999874
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=3.3e-05 Score=55.58 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=23.9
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44456667899999999999999999743
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=3.7e-05 Score=56.61 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=25.8
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..+++-.++|+|++|+|||||++.+.+
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 56778888999999999999999999874
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.61 E-value=4.1e-05 Score=52.85 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
.++..++++|++||||||+++.+.+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999998543
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.60 E-value=2.9e-05 Score=55.99 Aligned_cols=29 Identities=17% Similarity=0.398 Sum_probs=24.1
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44556677899999999999999999853
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=2.9e-05 Score=55.61 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3445666789999999999999999985
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.60 E-value=2.7e-05 Score=55.77 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++++|++|+|||||++.+.+
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4445666789999999999999999874
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.59 E-value=4e-05 Score=55.12 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=24.1
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 44556667899999999999999999843
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.59 E-value=4.6e-05 Score=54.26 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=22.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...+ -.++++|++|+|||||++.+.+-
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 33455 56899999999999999999853
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=3.1e-05 Score=56.14 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=24.1
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44556667899999999999999999743
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.58 E-value=3.7e-05 Score=55.96 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=23.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34456667899999999999999999843
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.58 E-value=3.8e-05 Score=54.68 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=23.4
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3445666789999999999999999984
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=4.5e-05 Score=53.53 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++--++|+|++|||||||++.+.+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 55667899999999999999999853
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.56 E-value=5.1e-05 Score=52.27 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=21.2
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++...+...|+++|++||||||+.+.+.
T Consensus 19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 19 YFQSNAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHH
T ss_pred eEecCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4445566789999999999999999987
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.56 E-value=3.6e-05 Score=55.66 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4455666789999999999999999874
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.55 E-value=3.2e-05 Score=55.49 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|+|||||++.+.+-
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34455667899999999999999999753
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.54 E-value=6e-05 Score=52.35 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+++--++++|++||||||+++.+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 45667899999999999999999854
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=6.6e-05 Score=51.07 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=23.8
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...+...|+++|++||||||+.+.+..
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 44556678899999999999999999874
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=4.8e-05 Score=55.69 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=23.2
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3345566789999999999999999874
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=97.49 E-value=7.4e-05 Score=56.31 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=24.1
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|||||||++.+.+-
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 44556667899999999999999999853
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.48 E-value=9.1e-05 Score=57.02 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
+-.++++|++|+||||++..+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999887
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=8.8e-05 Score=51.11 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=23.7
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++..|+++|++|+||||+++.+.+
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456678899999999999999998873
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.48 E-value=7.1e-05 Score=53.30 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...|+|+|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.47 E-value=8e-05 Score=51.33 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++..++++|++||||||+++.+.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467789999999999999999873
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.46 E-value=8e-05 Score=56.05 Aligned_cols=29 Identities=31% Similarity=0.361 Sum_probs=23.9
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 34456667899999999999999999853
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=3.1e-05 Score=57.09 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=23.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-.++|+|++|+|||||++.+.+
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 4456677899999999999999998874
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00011 Score=52.95 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=23.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..++-.++|+|++|||||||++.+.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHH
Confidence 56677899999999999999999874
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00015 Score=53.85 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...+-|+|+|++|||||||++.+.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998863
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.45 E-value=7.5e-05 Score=50.05 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..|+++|++||||||+++.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.44 E-value=6.4e-05 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++-.++++|++|+|||||++.+.+-
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44557899999999999999999853
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.42 E-value=7.9e-05 Score=50.77 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999974
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.42 E-value=8.1e-05 Score=53.71 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
+... +-.++++|++|+|||||++.+.+-.
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445 6678999999999999999998543
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00012 Score=49.22 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++++|++||||||+++.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356789999999999999998863
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00012 Score=49.72 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.+..|+++|++||||||+.+.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999987
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00011 Score=55.77 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 44456667899999999999999999853
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00011 Score=55.40 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=23.9
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 44456667899999999999999999853
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.40 E-value=8.8e-05 Score=50.83 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 579999999999999999885
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.40 E-value=9.9e-05 Score=49.31 Aligned_cols=20 Identities=15% Similarity=0.489 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCChHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVI 39 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l 39 (184)
..|+++|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.40 E-value=8.5e-05 Score=51.37 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++..|+++|++||||||+++.+..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999974
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.39 E-value=9.5e-05 Score=50.50 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
|+|+||+|||||||++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00011 Score=55.31 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=23.9
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 44456667899999999999999999853
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0001 Score=55.43 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34455666899999999999999999853
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0001 Score=55.43 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
+-.++++|++|+|||||++.+.+..
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 3478999999999999999998643
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00014 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...|+|+|++||||||+++.+.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999985
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00013 Score=52.30 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.1
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHH
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
..++..|+|+|++||||||+++.+.
T Consensus 24 ~~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 24 TAIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999997
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00011 Score=48.99 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
.|+++|++||||||+.+.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999987
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00013 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...|+|+|++||||||+++.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998873
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00013 Score=55.28 Aligned_cols=29 Identities=34% Similarity=0.375 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 44456667899999999999999999853
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00013 Score=50.33 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
+|+|+|++||||||+.+.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999985
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00014 Score=53.48 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++-.++++|++||||||+++.+.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 345678999999999999999997
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0036 Score=42.84 Aligned_cols=81 Identities=9% Similarity=0.068 Sum_probs=50.0
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCccCcC--CH
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP-SLNGIPLLVLGNKIDKPEAL--SK 139 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~--~~ 139 (184)
.+.+.++|+|+... ......+..+|.+++++..+... .........+.... ...+.++.+|.|+.|..... ..
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~ 150 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVL 150 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHH
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHH
Confidence 47899999997652 33345566789999999886544 45544444443221 12456789999999864321 23
Q ss_pred hHHHHHcC
Q 029978 140 EDLMEQMG 147 (184)
Q Consensus 140 ~~~~~~~~ 147 (184)
.+..+..+
T Consensus 151 ~~~l~~~~ 158 (206)
T 4dzz_A 151 KESIKDTG 158 (206)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcC
Confidence 44444444
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00015 Score=48.72 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..|++.|++||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999985
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00015 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.|+++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00013 Score=55.21 Aligned_cols=29 Identities=31% Similarity=0.322 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 33455566899999999999999999854
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=50.66 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
++|+|+|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999985
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00012 Score=55.84 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|||||||++.+.+
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 3445666789999999999999999985
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00015 Score=53.45 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++..|+|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5668899999999999999999874
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00019 Score=48.90 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+..|+++|++||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999863
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00014 Score=50.56 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
++|+|+|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999996
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00025 Score=54.57 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=23.6
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+...++-.++|+|++|||||||++.+.+
T Consensus 160 ~~l~~~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 160 RRLIKRPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp HHHHTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEECCCCCCHHHHHHHHHh
Confidence 333334556789999999999999999984
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00018 Score=49.45 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=22.8
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
....+..|+++|++||||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345567899999999999999999873
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00017 Score=54.35 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=22.3
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...++-.++|+|++|||||||++.+.+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 334445899999999999999999874
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00017 Score=50.43 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++...|+++|++||||||+.+.|.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999886
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00011 Score=55.45 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.-+++|+|++|+|||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999853
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0001 Score=55.31 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=24.1
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 44556667899999999999999999853
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00017 Score=48.92 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..|+|.|++||||||+++.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999863
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00018 Score=51.43 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=21.7
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.....+.+.|+|.|++||||||+.+.|..
T Consensus 16 ~~~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 16 QPNGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred hccCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34445568899999999999999998874
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00015 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...|+|+|++||||||+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999863
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00022 Score=48.41 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.4
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
...++..|+++|.+||||||+++.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 34567889999999999999999986
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00017 Score=53.12 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
+-.++++|++|+|||||++.+.+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 3467999999999999999998543
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00021 Score=50.89 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.+.+.|+++|++||||||+.+.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999996
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.26 E-value=4.6e-05 Score=56.18 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++-.++++|++|+|||||+|.+.+.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 4567899999999999999999753
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00017 Score=53.03 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
+..++++|++|+|||||++.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999998
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00019 Score=49.29 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|+|.|++||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999874
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00023 Score=48.85 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=22.8
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++...|+|+|++||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 345678999999999999999999853
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00021 Score=49.10 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..|+++|++||||||+++.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999984
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00022 Score=49.20 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..|++.|++||||||+++.+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999874
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00012 Score=55.34 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=25.6
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..+++-.++|+|++|+|||||++.+.+
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 55667788999999999999999999984
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00023 Score=48.33 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|+|.|++||||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999873
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=9.7e-05 Score=55.55 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=24.2
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 26 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 26 INIENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 44556667899999999999999999854
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00024 Score=48.34 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
+..|+++|.+||||||+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999886
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00021 Score=50.02 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++--++|+|++|+|||||++.+.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4566789999999999999999975
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0003 Score=53.32 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=22.8
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..++-.++|+|++||||||+++.+.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 45667899999999999999999984
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00025 Score=49.16 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+++..|++.|.+||||||+++.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999873
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00021 Score=48.02 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..|.++|++||||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00056 Score=49.93 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+..|++.|++||||||+++.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467789999999999999999973
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00024 Score=53.47 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++-.++++|++||||||++..+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHH
Confidence 345678999999999999999987
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00026 Score=48.29 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.+...|+++|++||||||+.+.+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999986
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00025 Score=49.02 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999873
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00018 Score=55.95 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=26.1
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++...++-.++|+|++|||||||++.+.+
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 456667888899999999999999999884
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00023 Score=51.62 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999984
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0003 Score=48.36 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.+...|++.|++||||||+.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 445678999999999999999987
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00025 Score=47.93 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..++++|++|+|||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3578999999999999999984
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00026 Score=55.42 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.7
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHH
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
..++-.++|+|++|||||||++.+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHH
Confidence 3456678999999999999999987
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00026 Score=49.27 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
++|++.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999986
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00024 Score=47.95 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.....|+++|++|+||||+.+.+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 345678999999999999999987
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00028 Score=47.77 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
...|+++|++||||||+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999986
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00027 Score=49.59 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...|+++|++||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999999987
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00028 Score=49.00 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
+.|+++|+|||||+|...++.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999987
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00079 Score=45.28 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...-.+.+.|++|+|||++++.+..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999998874
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00012 Score=49.40 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.++|+|++|||||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999884
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00023 Score=50.14 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++.-|+|.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 56788999999999999999998753
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00037 Score=47.00 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..|+++|.+||||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999874
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00033 Score=46.58 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
+|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999873
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00077 Score=46.27 Aligned_cols=22 Identities=41% Similarity=0.410 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+.+.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999998874
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00013 Score=54.48 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=24.8
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344466678999999999999999999853
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0002 Score=56.50 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=23.5
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+....+..++|+|++||||||+++.+.+
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGG
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445666799999999999999999985
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00038 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+.|+|.|++||||||+.+.+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00036 Score=51.43 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++-.++++|++||||||+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 35678999999999999999997
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00028 Score=47.44 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
+|+|+|++||||||+.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999986
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00034 Score=49.91 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
++++|++|+|||||++.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999985
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00024 Score=46.71 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++-.++++|++|+|||||++.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 455689999999999999999884
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00033 Score=47.33 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=19.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++ -.+|+|++|+|||||++.+..
T Consensus 25 ~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 25 SKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp CSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHH
Confidence 344 458999999999999999863
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00029 Score=52.87 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=26.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++=+++|+|++|+|||||++.+.+.
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56678889999999999999999999864
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00038 Score=55.86 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=24.8
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..+++-.++++|++|+|||||++.+.+
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45556777899999999999999999984
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00062 Score=47.09 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=24.4
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+..|++.. ++.-.+.+.||||+||||++..+.+
T Consensus 46 ~~l~~~~~~i--Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 46 GALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHhcC--CcccEEEEECCCCCCHHHHHHHHHH
Confidence 3444455432 3334589999999999999888873
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00031 Score=49.13 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
....|+|+|++||||||+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999986
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00039 Score=47.27 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00036 Score=56.01 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=23.7
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-.++++|++|+|||||++.+.+
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3445667899999999999999999874
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0004 Score=48.67 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
.|++.|++||||||+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0004 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...|+++|++||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999986
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00033 Score=50.15 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+..|+++|++||||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999999863
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00061 Score=47.27 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=22.9
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...++..|+++|.+|+||||+++.+.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 344667789999999999999999886
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00042 Score=47.35 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
....|+++|++||||||+.+.+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999873
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00029 Score=47.50 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=16.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...|++.|.+||||||+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999999986
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00061 Score=48.05 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++..|++.|++||||||+++.+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3678899999999999999999874
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00047 Score=48.75 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
...+.|+|.|++|+||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999886
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00087 Score=44.95 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...-.+.+.|++|+|||++++.+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999998874
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00031 Score=50.30 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=23.1
Q ss_pred hccCC---ceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQ---EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~---~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...+ +-.|+|+|++|+||||+.+.+..
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 44445 67899999999999999999863
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00081 Score=47.15 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..-.+.+.|++|+|||||++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467789999999999999998873
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0003 Score=56.59 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-.++++|++|+|||||++.+.+
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4456677899999999999999999874
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00048 Score=49.90 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
++++|++|+|||||++.+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 89999999999999999985
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00056 Score=48.22 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.....|+++|.+||||||+.+.|.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 445789999999999999999987
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.014 Score=41.82 Aligned_cols=66 Identities=5% Similarity=-0.093 Sum_probs=41.9
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 132 (184)
..+.+.++|+|+... ......+..+|.+++++..+. .+..........+... . .+.++.+|+|+.+
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~-~-~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKL-N-LFLPIFLIITRFK 208 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTT-T-CCCCEEEEEEEEC
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHH-h-ccCCEEEEEeccc
Confidence 346789999987542 233455667999999998853 3444444433333322 2 3567889999984
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00064 Score=46.09 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
...|+++|++||||||+.+.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999986
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00065 Score=49.41 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
...+.|+|+|++||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999987
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00061 Score=48.95 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...|+++|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999873
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00049 Score=49.28 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
.|+|+|++|||||||...+.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999999999986
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0012 Score=45.54 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.+.+.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998873
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00049 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++--++++|++|+|||||+..+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHH
Confidence 455568999999999999999987
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00073 Score=53.69 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=23.2
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
..++-.++++|++|+|||||++.+.+-
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356667899999999999999999863
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00055 Score=45.95 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..++++|++|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999873
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00054 Score=45.72 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|+++|++||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999873
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00055 Score=53.00 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=26.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++=+++|+|++|+|||||++.+.+.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 66788889999999999999999999864
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00062 Score=45.34 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|+++|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00055 Score=46.26 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|+++|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998863
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00069 Score=51.37 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-.++++|++|+|||||++.+.+
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4556777899999999999999999884
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00061 Score=44.71 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=17.3
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 029978 22 LSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~ 40 (184)
.+|+|++|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3899999999999999976
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00019 Score=49.71 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
.|+|.|++||||||+++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999986
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0014 Score=48.31 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=27.1
Q ss_pred HHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
....|...+.....-.+.+.|++|+|||+|+..+..
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 444566555433457899999999999999998873
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00088 Score=46.84 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=19.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+.--|.++|+|||||+|....+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 33446789999999999999887
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00058 Score=53.36 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=21.6
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...+ -.++|+|++|+|||||++.+.+
T Consensus 26 ~i~~-e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 26 DFDE-LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp ECCS-SEEEEECCTTSSHHHHHHHHHH
T ss_pred EEcc-ceEEEECCCCCcHHHHHHHHhc
Confidence 3445 5679999999999999999873
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00055 Score=51.03 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
-.++++|++|+|||||++.+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999984
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00094 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++-.++++|++|+|||||++.+.+-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4456799999999999999999853
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0014 Score=42.57 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=26.6
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+.+....... ......|.+.|++|+|||++++.+...
T Consensus 11 ~~~~~~~~~~-a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 11 NQYRRRLQQL-SETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHH-TTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHH-hCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3444444333 345567999999999999999999743
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00034 Score=56.08 Aligned_cols=28 Identities=25% Similarity=0.597 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-.++++|++|+|||||++.+.+
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhc
Confidence 4456677899999999999999998874
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0014 Score=46.68 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
....+.+.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999974
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00073 Score=53.69 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++-.++|+|++|+|||||++.+.+-
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667899999999999999999864
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00035 Score=56.14 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-.++++|++|+|||||++.+.+
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3455667899999999999999998874
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00055 Score=50.70 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~ 42 (184)
-++|+|+.|+|||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 3579999999999999999954
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0017 Score=46.72 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
......+.+.|++|+|||++++.+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 45567899999999999999999974
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0009 Score=45.89 Aligned_cols=24 Identities=17% Similarity=0.466 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
....|+++|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999874
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00061 Score=57.54 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=25.3
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCCC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGY 44 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~~ 44 (184)
+...++-.++|+|++|+|||||++.+.++..
T Consensus 456 l~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 456 LRLKRARRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3445667789999999999999999986543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0018 Score=47.44 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++-.++++|++|+||||++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45578999999999999999886
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00082 Score=54.16 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++-.++|+|++|+|||||++.+.+-
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45567899999999999999999864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0012 Score=53.27 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++-.++++|++|+|||||++.+.+-
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 44567899999999999999999853
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00076 Score=53.57 Aligned_cols=26 Identities=19% Similarity=0.426 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++-.++|+|++|+|||||++.+.+-
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44556899999999999999999853
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00077 Score=47.47 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=18.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++.-|++.|++||||||+++.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 467889999999999999999886
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0023 Score=44.63 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.++|.|++|+||||+++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999874
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.001 Score=46.95 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+...|+|+|++|+||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998873
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00085 Score=47.26 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++--++|+|++|+|||||+..+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4566789999999999999999985
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0011 Score=45.92 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++--++++|++|+|||||+..+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566789999999999999999985
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0013 Score=53.05 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
..++-.++|+|++|+|||||++.+.+-
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 356667899999999999999999853
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00058 Score=49.94 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=18.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+...|+|.|++||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998863
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0012 Score=48.24 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=23.3
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+-..++--++|+|++|+|||||+..+.+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3446667789999999999999998873
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.001 Score=50.23 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=19.9
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHH
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
...++ .+|+|++|+|||||++.+.
T Consensus 21 ~~~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 21 FQSGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CCSEE-EEEECCTTSSHHHHHHHHH
T ss_pred cCCCe-EEEECCCCCCHHHHHHHHH
Confidence 34555 5699999999999999987
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0028 Score=47.50 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=25.8
Q ss_pred HHHHHHHHHhh-ccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 4 WEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.+.++..+... ...+..+|+++|++|+||||+.+.+.
T Consensus 8 ~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 8 ADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp HHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHH
Confidence 34455555332 22344679999999999999998776
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.001 Score=47.48 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...++++|++|+||||+++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34689999999999999999974
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0023 Score=46.85 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.....+.+.|++|+|||++++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999998665
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0014 Score=49.47 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcc-CCce--EEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLFF-KQEM--ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~-~~~~--~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+..++..... ...- .++|.|++|+|||||++.+.+
T Consensus 27 ~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 27 QQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp HHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 345555544322 2234 789999999999999999874
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0018 Score=47.54 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
....-.+.+.|++|+|||+|++.+.+
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHH
Confidence 35556799999999999999999984
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0018 Score=46.84 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...-.+.+.|++|+|||+|++.+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4556799999999999999999974
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00032 Score=61.39 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=24.4
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.++++-+|+|+|++|+|||||++.+.+
T Consensus 1100 l~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1100 FSVEPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEECTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhc
Confidence 4556778899999999999999999873
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0003 Score=53.93 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=21.7
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...++ .++|+|++|+|||||++.+.
T Consensus 56 l~~~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 56 LELGGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EECCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHH
Confidence 344567 78999999999999998874
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0015 Score=45.98 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
..++++++|+|||||||+...+.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 35789999999999999999886
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0016 Score=47.60 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..|++.|++||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999974
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0026 Score=49.04 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=24.0
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+-.+..--+.+.||||+|||+|++.+.+
T Consensus 199 ~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 199 EQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp HHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 333445556799999999999999999983
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0018 Score=47.74 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++-.++++|++|+||||++..+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 34568999999999999999887
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0016 Score=44.72 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|+|.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0014 Score=47.54 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++--++|+|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445689999999999999998874
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0023 Score=48.00 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=23.4
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
-..++--+.|+|++|+|||||+..+...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456667899999999999999999853
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0019 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~ 43 (184)
.++|+|++|+|||||++.+.+-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999998643
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.002 Score=47.11 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
....+.+.|+||+|||+|++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346678889999999999999984
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0019 Score=44.56 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=17.1
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 029978 22 LSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~ 40 (184)
.+|+|++|+||||++..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4799999999999999875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00084 Score=56.72 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=23.7
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+....+-.++|+|++|+|||||++.+.+-
T Consensus 694 l~I~~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 694 FQCSLSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEETTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33455667999999999999999999853
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0026 Score=43.81 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+..|+|+|++|+|||||+..|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999843
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0018 Score=42.06 Aligned_cols=36 Identities=8% Similarity=0.041 Sum_probs=25.2
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+....... ......|.+.|++|+|||++++.+..
T Consensus 14 ~~l~~~~~~~-~~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 14 QEMNREVEAA-AKRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp HHHHHHHHHH-HTCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred HHHHHHHHHH-hCCCCcEEEECCCCccHHHHHHHHHH
Confidence 3344444332 23456799999999999999998863
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0019 Score=47.06 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.-.+.+.|++|+|||++++.+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 46789999999999999999984
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.002 Score=45.41 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=19.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++--+++.|++|+|||||+..+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 445567999999999999987775
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0015 Score=57.21 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-.++|+|++|||||||++.+.+
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTT
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhcc
Confidence 4456777899999999999999998873
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0013 Score=52.34 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=23.1
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..++..++++|++|||||||++.+.+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHH
Confidence 45778899999999999999999874
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0049 Score=46.38 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=26.0
Q ss_pred HHHHHHHHhhc-cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+..++.... ....-.+.|.|++|+||||+++.+..
T Consensus 30 ~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 30 RDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 34444554432 23345789999999999999999874
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0029 Score=46.85 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=26.8
Q ss_pred HHHHHHHh-hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 6 AFLNWLRS-LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 6 ~~~~~~~~-~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+..++.. ......-.+.|.|+||+|||++++.+..
T Consensus 31 ~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 31 RIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp HHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 44444444 2345667889999999999999999874
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0027 Score=44.89 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..|++.|..||||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999874
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0011 Score=54.16 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=19.9
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHH
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVI 39 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l 39 (184)
.+.++-.++|+|++|||||||++.+
T Consensus 344 ~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 344 KIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEETTSEEEEECSTTSSHHHHHTTT
T ss_pred EecCCCEEEEEeeCCCCHHHHHHHH
Confidence 3345566899999999999999754
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0046 Score=46.01 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.+.+.|++|+||||+++.+.+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999874
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0037 Score=48.24 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=24.4
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+-.+..-.|.+.||||+|||+|++.+.+
T Consensus 208 ~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 208 KDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp HHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 334445567899999999999999999983
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0024 Score=48.06 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=21.2
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...++ -.+|+|++|+||||+++.+..
T Consensus 23 ~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 23 NFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp ECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 33455 569999999999999999873
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0023 Score=49.19 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...-|+++|++||||||+.+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346688999999999999999873
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0021 Score=47.46 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.-.+.+.|++|+|||||++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35689999999999999999874
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0014 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=19.3
Q ss_pred hccCCceEEEEEcCCCCChHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLV 36 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli 36 (184)
+..+++-.++|+|++|+|||||+
T Consensus 39 l~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 39 VEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHh
Confidence 44456677999999999999996
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0035 Score=46.65 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.+.+.|++|+||||+++.+.+
T Consensus 60 ~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999874
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0027 Score=47.72 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...-.+.|.|++|+||||+++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999873
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0016 Score=56.95 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=0.0
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..+++-.++++|++|+|||||++.+.+
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0048 Score=45.78 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=25.7
Q ss_pred HHHHHHHHhhc--cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLF--FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~--~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+..++.... ....-.+.+.|++|+|||++++.+..
T Consensus 39 ~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 39 KNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp HHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 34444444332 23335689999999999999999974
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0015 Score=46.82 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...|+|.|..||||||+++.|..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998873
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0071 Score=43.53 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=25.1
Q ss_pred HHHHHHhhccCC---ceEEEEEcCCCCChHHHHHHHHc
Q 029978 7 FLNWLRSLFFKQ---EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 7 ~~~~~~~~~~~~---~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..|+..+...+ .-.+.+.||||+|||.|+..+..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 334444444433 33589999999999999999984
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0024 Score=47.29 Aligned_cols=23 Identities=17% Similarity=0.518 Sum_probs=19.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++ -.+|+|++|+|||||+..+.
T Consensus 23 ~~g-~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 23 SDR-VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp CSS-EEEEECCTTTCSTHHHHHHH
T ss_pred CCC-cEEEECCCCCcHHHHHHHHH
Confidence 445 45899999999999999987
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0026 Score=47.73 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..-.++|.|++|+|||||++.+.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999874
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0027 Score=47.35 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..|+|.|++|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998873
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0025 Score=44.21 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..|+|+|++||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998874
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0066 Score=44.95 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.-.+.+.|++|+|||+|++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 35789999999999999999984
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0036 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+.-.++++|++|+||||++..+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44568999999999999999887
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0029 Score=47.22 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=19.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++++ +|+|++|+||||++..+.
T Consensus 22 ~~~~~-~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 22 KEGIN-LIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CSEEE-EEECCTTSSHHHHHHHHH
T ss_pred CCCeE-EEECCCCCCHHHHHHHHH
Confidence 34455 799999999999999874
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0028 Score=50.23 Aligned_cols=25 Identities=16% Similarity=0.042 Sum_probs=21.2
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHH
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVI 39 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l 39 (184)
...++-.++|+|++|+|||||++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 3456667899999999999999995
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0073 Score=48.06 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+.+.+++..-.....--|+|+|.+|+|||||+..+.+
T Consensus 137 ~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 137 VDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 34566666443222345678999999999999999985
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0057 Score=47.22 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=23.5
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+-.+..--|.+.||||+|||+|++.+.+
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3345567899999999999999999983
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0035 Score=42.45 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 029978 22 LSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~ 42 (184)
+.|+|.+||||||+..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999843
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0042 Score=45.40 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
-.++++|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4789999999999999999874
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0042 Score=43.23 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++.-|++.|++||||||+++.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHH
Confidence 46778999999999999999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 184 | ||||
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-32 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 7e-32 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 6e-29 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 5e-28 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 4e-27 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 1e-26 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 9e-26 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-25 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 9e-25 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 2e-24 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 1e-22 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 2e-21 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 2e-21 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 5e-21 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 3e-20 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 3e-20 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 9e-20 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 1e-19 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 3e-19 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 4e-19 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 4e-18 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 5e-18 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 7e-18 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 7e-17 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 2e-16 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 4e-16 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 6e-16 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 7e-16 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 1e-15 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 2e-15 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 5e-15 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 8e-15 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 1e-14 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 9e-14 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 2e-13 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 4e-13 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 9e-13 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 1e-12 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 2e-12 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 3e-12 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 6e-12 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 8e-12 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 1e-11 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 1e-11 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 2e-11 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 8e-11 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 3e-10 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 4e-10 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 5e-10 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 6e-10 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 4e-09 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 7e-09 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 1e-07 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 2e-07 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 1e-06 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 1e-06 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 2e-06 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 2e-06 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 8e-06 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 1e-05 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 2e-05 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 2e-05 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 2e-05 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 4e-05 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 5e-05 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 7e-05 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 8e-05 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 5e-04 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 9e-04 |
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 112 bits (280), Expect = 2e-32
Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 1/173 (0%)
Query: 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKL 68
L +F +EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +
Sbjct: 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKL-KLGQSVTTIPTVGFNVETVTYKNVKFNV 60
Query: 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
WD+GGQ + R +W Y +++VVD AD D + +R ELH +++ + +L+
Sbjct: 61 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 120
Query: 129 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181
NK D P+A+ ++ E++GL I DR + + + WL + K
Sbjct: 121 NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 111 bits (277), Expect = 7e-32
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 2/178 (1%)
Query: 7 FLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVT 65
F + L+ +E+ + ++GL AGKT+++ + G PT+GFN+ ++ N+
Sbjct: 4 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRL-QIGEVVTTKPTIGFNVETLSYKNLK 62
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 125
+ +WDLGGQ R W Y +A+++VVD+ D D + + ELH +L + L LL
Sbjct: 63 LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL 122
Query: 126 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
V NK D+P ALS ++ +++ L + DR S I +DWL+ K +
Sbjct: 123 VFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 103 bits (256), Expect = 6e-29
Identities = 112/164 (68%), Positives = 139/164 (84%)
Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
+EMEL+L+GLQ +GKT+ VNVIA+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+GGQPRF
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137
RSMWERYCR VSAIVY+VDAAD + + S++ELH+LL KP L GIP+LVLGNK D P AL
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 120
Query: 138 SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181
+++L+E+M L +I DRE+CCY ISCK NID + WL++HSK
Sbjct: 121 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 101 bits (251), Expect = 5e-28
Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 1/175 (0%)
Query: 7 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTI 66
+ LF QE ++ ++GL NAGKT+++ + PT+G N+ ++ N
Sbjct: 3 LFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVINNTRF 61
Query: 67 KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 126
+WD+GGQ RS W Y ++ VVD+ D + + V+R EL+ +L+ L LL+
Sbjct: 62 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLI 121
Query: 127 LGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181
NK D E ++ ++ + + L SI D + + ++W++ K
Sbjct: 122 FANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 98.9 bits (245), Expect = 4e-27
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 3/175 (1%)
Query: 7 FLNWLRSLF--FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNV 64
L+ LR L QE+ + L+GL NAGKT+L+ + + PT GFN++ V
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQL-ASEDISHITPTQGFNIKSVQSQGF 60
Query: 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 124
+ +WD+GGQ + R W Y ++YV+D+AD + EL +LL + L+ +P+
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120
Query: 125 LVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
L+ NK D A ++ E + L +I DR S + ++W+ K+
Sbjct: 121 LIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 97.4 bits (241), Expect = 1e-26
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 1/165 (0%)
Query: 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
E+ L ++GL NAGKT+++ G + + PT+GFN++ + + +WD+GGQ R
Sbjct: 2 ELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138
S W Y + +++VVD+AD + + EL LL + L G LL+ NK D P ALS
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120
Query: 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+ E + L SI S ++ IDWL+ S+
Sbjct: 121 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 95.2 bits (236), Expect = 9e-26
Identities = 33/164 (20%), Positives = 69/164 (42%), Gaps = 8/164 (4%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
LIG GKT ++ + ++ I T+G + + ++ + +++WD GQ RFR+
Sbjct: 11 LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 70
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
+ Y R I+ V D + + R+ + ++ S + +++ K
Sbjct: 71 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND----K 126
Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+ ++ G K D + S K + N++ L + K+K
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 93.9 bits (232), Expect = 2e-25
Identities = 48/160 (30%), Positives = 85/160 (53%), Gaps = 1/160 (0%)
Query: 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
M + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
+W Y + +++VVD+ D + + +R EL +L++ L LLV NK D P A++
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 119
Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
++ +++GL S+ R + + +DWL
Sbjct: 120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.5 bits (229), Expect = 9e-25
Identities = 33/168 (19%), Positives = 63/168 (37%), Gaps = 9/168 (5%)
Query: 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75
M++ LIG GK+ L+ ++ I T+G + + + V +++WD GQ
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
RFR++ Y R I+ V D D + + + + + L +
Sbjct: 63 RFRTITTAYYRGAMGIILVYDITDER----TFTNIKQWFKTVNEHANDEAQL-LLVGNKS 117
Query: 136 ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+ + G + + S KN N++ + L K + K
Sbjct: 118 DMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 91.3 bits (225), Expect = 2e-24
Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 8/163 (4%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWER 83
+GL NAGKT+L++++ + PT ++ GN+ +DLGG + R +W+
Sbjct: 5 FLGLDNAGKTTLLHML-KNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD 63
Query: 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLM 143
Y V+ IV++VDAAD + +R EL L + L +P ++LGNKID P A+S+ +L
Sbjct: 64 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELR 123
Query: 144 EQMGLKSIT-------DREVCCYMISCKNSTNIDTVIDWLVKH 179
+GL + T R V +M S WL ++
Sbjct: 124 SALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 166
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 87.8 bits (216), Expect = 1e-22
Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVT 65
+ L +L +K+ +L +GL NAGKT+L++++ +PT+ ++T +T
Sbjct: 2 SVLQFLG--LYKKTGKLVFLGLDNAGKTTLLHML-KDDRLGQHVPTLHPTSEELTIAGMT 58
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 125
+DLGG + R +W+ Y A++ IV++VD AD++ L S+ EL L++ ++ +P+L
Sbjct: 59 FTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPIL 118
Query: 126 VLGNKIDKPEALSKEDLMEQMGL------------KSITDREVCCYMISCKNSTNIDTVI 173
+LGNKID+PEA+S+E L E GL K + R + +M S
Sbjct: 119 ILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 178
Query: 174 DWLVKH 179
W+ ++
Sbjct: 179 RWMAQY 184
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.5 bits (208), Expect = 2e-21
Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 8/164 (4%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
LIG GK+ L+ + Y+ D I T+G + + ++ V +++WD GQ RFR+
Sbjct: 11 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT 70
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
+ Y R I+ V D + + + + + L++GNK D + K
Sbjct: 71 ITSSYYRGSHGIIIVYD-VTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD---K 126
Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+ + + ++ S +STN++ + + K
Sbjct: 127 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKES 170
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.7 bits (206), Expect = 2e-21
Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 8/164 (4%)
Query: 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQ 74
+++ +IG GK+SL+ + ++ T+G + + V + +WD GQ
Sbjct: 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 66
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
RFR++ Y R ++ V D D + L++L + + N I +++GNKIDK
Sbjct: 67 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 126
Query: 135 EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+ + + S K + + LV+
Sbjct: 127 NREVDRNEGLKF----ARKHSMLFIEASAKTCDGVQCAFEELVE 166
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.9 bits (204), Expect = 5e-21
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
LIG GKT LV G + T+G + ++ V +++WD GQ RFRS
Sbjct: 10 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS 69
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
+ + Y R+ +A++ D ++ L ++ S I +LV +
Sbjct: 70 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE----R 125
Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
++ +Q + +++ S K S N++ + L
Sbjct: 126 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 164
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 81.1 bits (199), Expect = 3e-20
Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
+IG + GKTS + A ++ + TVG + + + +++WD GQ R+R+
Sbjct: 10 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRT 69
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
+ Y R + + D + ++ + D ++ + +K + +
Sbjct: 70 ITTAYYRGAMGFILMYDITNEESFN----AVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+ + G + + S K++ N+ + LV
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 164
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 80.9 bits (198), Expect = 3e-20
Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 1/165 (0%)
Query: 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
EM + ++GL AGKT+++ + G IPT+GFN+ VT N+ ++WDLGG R
Sbjct: 5 EMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 63
Query: 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138
W Y A++YVVD+ D D + +S+SEL +L + L L+V NK D +A++
Sbjct: 64 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 123
Query: 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
++ +GL ++ DR+ + S T +D ++WLV+ KS+
Sbjct: 124 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.6 bits (198), Expect = 9e-20
Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 14/131 (10%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75
++ L L+G +GK+++V + ++ T G K V ++D+GGQ
Sbjct: 3 YRATHRLLLLGAGESGKSTIVKQMRIL----HVVLTSGIFETKFQVDKVNFHMFDVGGQR 58
Query: 76 RFRSMWERYCRAVSAIVYVVDAADYDN----------LPVSRSELHDLLSKPSLNGIPLL 125
R W + V+AI++VV ++ Y+ L + + + + L I ++
Sbjct: 59 DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 118
Query: 126 VLGNKIDKPEA 136
+ NK D
Sbjct: 119 LFLNKQDLLAE 129
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.5 bits (195), Expect = 1e-19
Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 17/174 (9%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT--------------KGNVTIKLW 69
+G GKT+ + ++ I TVG + R+ V ++LW
Sbjct: 10 ALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLW 69
Query: 70 DLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 129
D GQ RFRS+ + R + + D + R+ + L + ++++GN
Sbjct: 70 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 129
Query: 130 KIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
K D P+ + ++ E+ + + + S N++ ++ L+ +
Sbjct: 130 KADLPD---QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 180
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.0 bits (191), Expect = 3e-19
Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 9/160 (5%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-----VTKGNVTIKLWDLGGQPRFR 78
L+G GKT L+ G + + + V V +++WD GQ RFR
Sbjct: 11 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR 70
Query: 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138
S+ Y R A++ + D + + ++ L ++ + +L+ E +
Sbjct: 71 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVV 130
Query: 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
K + E++ + + S K N+D + K
Sbjct: 131 KREDGEKL----AKEYGLPFMETSAKTGLNVDLAFTAIAK 166
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.0 bits (191), Expect = 4e-19
Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 8/160 (5%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
LIG GK++L++ ++ + T+G +V + ++WD GQ R+R
Sbjct: 9 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR 68
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
+ Y R + V D A + L +L + I ++++GNK D
Sbjct: 69 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRH---L 124
Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
+ + S +STN++ ++
Sbjct: 125 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 164
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.3 bits (184), Expect = 4e-18
Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
+IG GK+ L++ + D T+G +V+ + +++WD GQ RFR+
Sbjct: 9 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 68
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
+ Y R + + V D S L D + ++++GNK D +
Sbjct: 69 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR-NLTNPNTVIILIGNKADLEA---Q 124
Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
D+ + + + + S K N++ K
Sbjct: 125 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 163
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.7 bits (185), Expect = 5e-18
Identities = 32/193 (16%), Positives = 70/193 (36%), Gaps = 35/193 (18%)
Query: 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
E++L L+G +GK++ + + +PT G +V ++ D+GGQ R
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRII--HGSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59
Query: 79 SMWERYCRAVSAIVYVVDAADYD----------NLPVSRSELHDLLSKPSLNGIPLLVLG 128
W V++I+++V ++YD + S++ +++ P +++
Sbjct: 60 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119
Query: 129 NKIDKPEALSKEDLMEQ-----------------------MGLKSITDREVCCYMISCKN 165
NK D E + + L +D+ + + +
Sbjct: 120 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATD 179
Query: 166 STNIDTVIDWLVK 178
+ NI V +
Sbjct: 180 TENIRFVFAAVKD 192
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.5 bits (182), Expect = 7e-18
Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 8/164 (4%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRS 79
+IG GK+ L+ + T+G + + +++WD GQ FRS
Sbjct: 8 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS 67
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
+ Y R + + V D + S L D S + + ++++GNK D +
Sbjct: 68 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLES---R 123
Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
D+ + G + + S K + N++ K K
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 167
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.9 bits (175), Expect = 7e-17
Identities = 30/164 (18%), Positives = 66/164 (40%), Gaps = 6/164 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV---TKGNVTIKLWDLGGQ 74
+E ++ ++G GK++L TG + E PT+ RK +++ D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
+F SM + Y + + V + + + ++ +P++++GNK+D
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 135 EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+ ++ G + S K+ T +D + +V+
Sbjct: 122 S---EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.7 bits (172), Expect = 2e-16
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 8/164 (4%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRS 79
+IG GK+ L++ + +D T+G V +++WD GQ RFRS
Sbjct: 10 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 69
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
+ Y R + + V D + + L D S I +++ GNK D
Sbjct: 70 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDA---D 125
Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
++ + + E+ S N++ + +K
Sbjct: 126 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK 169
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.0 bits (170), Expect = 4e-16
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 14/174 (8%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN----MRKVTKGNVTIK 67
+S FK + L+G GK+SL+N T + + T+G +V VT++
Sbjct: 3 KSSLFK----VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 58
Query: 68 LWDLGGQPRFRSMWERYCRAVSAIV---YVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 124
+WD GQ RFRS+ + R + V D+ + NL + E P
Sbjct: 59 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 118
Query: 125 LVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
++LGNKID E ++ E+ + + + S K++TN+ + V+
Sbjct: 119 VILGNKIDISE---RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 169
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.3 bits (171), Expect = 6e-16
Identities = 28/185 (15%), Positives = 65/185 (35%), Gaps = 37/185 (20%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWER 83
L+G +GK++ + + PT G + NV K+ D+GGQ R W
Sbjct: 7 LLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFE 63
Query: 84 YCRAVSAIVYVVDAADYDNL----------PVSRSELHDLLSKPSLNGIPLLVLGN-KID 132
+V++I+++V ++++D + S + +++ + + +++ N
Sbjct: 64 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 123
Query: 133 KPEALSKEDLMEQMG-----------------------LKSITDREVCCYMISCKNSTNI 169
E + + + + R + + + N+ NI
Sbjct: 124 LEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENI 183
Query: 170 DTVID 174
V
Sbjct: 184 RLVFR 188
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 69.2 bits (168), Expect = 7e-16
Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 6/163 (3%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSM 80
++G GK++L + ED PT + RK + V I + D GQ + ++
Sbjct: 9 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 68
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
+ Y R+ + V + ++ + +L +P L++GNK D +
Sbjct: 69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 128
Query: 141 DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+ V S K N+D V L++ +++
Sbjct: 129 VEEAKNRADQW---NVNYVETSAKTRANVDKVFFDLMREIRAR 168
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.2 bits (168), Expect = 1e-15
Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 38/193 (19%)
Query: 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
E++L L+G +GK+++V G T ++ K++D+GGQ R
Sbjct: 2 EVKLLLLGAGESGKSTIVKQ-----MKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSER 56
Query: 79 SMWERYCRAVSAIVYVVDAADYDNLPVSR----------SELHDLLSKPSLNGIPLLVLG 128
W V+AI++ V +DYD + + + +++
Sbjct: 57 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116
Query: 129 N-KIDKPEALSKEDLMEQMG----------------------LKSITDREVCCYMISCKN 165
N K E + K L K +E+ + +
Sbjct: 117 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATD 176
Query: 166 STNIDTVIDWLVK 178
+ N+ V D +
Sbjct: 177 TKNVQFVFDAVTD 189
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.1 bits (165), Expect = 2e-15
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQPRFRS 79
+G Q+ GKTSL+ + T+G + T + ++LWD GQ RFRS
Sbjct: 5 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRS 64
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
+ Y R +A V V D + ++ + + D+ ++ + I +LV GNK D +
Sbjct: 65 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV-GNKTDLADKRQV 123
Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+ K + V S K N+ + +
Sbjct: 124 SIEEGERKAKEL---NVMFIETSAKAGYNVKQLFRRVAA 159
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.0 bits (162), Expect = 5e-15
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 5/168 (2%)
Query: 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQP 75
++L L+G GK+S+V + ++E+ PT+G V ++WD GQ
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 76 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
RF S+ Y R A + V D + +R + + L + + I + ++GNKID +
Sbjct: 64 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDMLQ 122
Query: 136 ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+ + + G K ++ + + S K N++ V + + K
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.3 bits (163), Expect = 8e-15
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM--- 80
+GL ++GKT L + TG Y + ++ + N L P S+
Sbjct: 5 FVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQ 63
Query: 81 -WERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSL--NGIPLLVLGNKIDKPEA 136
+R+ + A+V+VVD+A + + L+ +L N LL+ NK D A
Sbjct: 64 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 123
Query: 137 LSKEDLMEQM 146
S + + +Q+
Sbjct: 124 KSAKLIQQQL 133
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.2 bits (160), Expect = 1e-14
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 8/160 (5%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG----FNMRKVTKGNVTIKLWDLGGQPRFRS 79
L+G GK+SLV G + E T+G + V ++WD GQ R+ S
Sbjct: 11 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
+ Y R A + V D + ++ +++ + +L + S I + + GNK D +
Sbjct: 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAV 129
Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
+ Q D + S K S N++ + + K
Sbjct: 130 DFQEAQSYAD---DNSLLFMETSAKTSMNVNEIFMAIAKK 166
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.9 bits (154), Expect = 9e-14
Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 5/164 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQ 74
+E +L ++G GK++L G + E PT+ + RK + +++ D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
+F +M + Y + V + +L +P++++GNK D
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 135 EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+ Q + + S K+ N++ + LV+
Sbjct: 122 DERVVGKEQGQNLARQWCN--CAFLESSAKSKINVNEIFYDLVR 163
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.7 bits (151), Expect = 2e-13
Identities = 24/164 (14%), Positives = 58/164 (35%), Gaps = 7/164 (4%)
Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG---FNMRKVTKGNVTIKLWDLGGQ 74
E +L ++G GK++L + + ++ PT+ + + + D GQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
+ +M ++Y R + V + + + + +P++++GNK D
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 135 EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+ + + + S K ++ LV+
Sbjct: 122 ARTVESRQAQDL----ARSYGIPYIETSAKTRQGVEDAFYTLVR 161
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.0 bits (149), Expect = 4e-13
Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 9/169 (5%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFR 78
++G GKTSL++ YS+ T+G + T+++WD GQ RF+
Sbjct: 7 ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ 66
Query: 79 SMWERYCRAVSAIV---YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
S+ + R V V +A+ ++N+ R E + S P ++LGNKID E
Sbjct: 67 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 126
Query: 136 ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 184
+ L + ++ ++ S KN+ N+DT + + + + ++
Sbjct: 127 SKKIVSEKSAQELAK-SLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 174
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.6 bits (148), Expect = 9e-13
Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 10/163 (6%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG----FNMRKVTKGNVTIKLWDLGGQPRFRS 79
++G GKTSL+N +S T+G V VT+++WD GQ RF+S
Sbjct: 7 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS 66
Query: 80 MWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
+ + R V V D + L R E S P +VLGNKID
Sbjct: 67 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN- 125
Query: 137 LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
++ ++ + + + S K + N++ + ++
Sbjct: 126 --RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 166
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.2 bits (147), Expect = 1e-12
Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 14/174 (8%)
Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N + V + LWD GQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
+ + + + R++ + + P++++G K+D
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 122
Query: 135 EALSKED---------LMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
+ + + GL + Y+ S + TV D ++
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.8 bits (146), Expect = 2e-12
Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 15/168 (8%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWER 83
+ G QN+GKTSL+ ++ T + + L D G + R
Sbjct: 8 IAGPQNSGKTSLLTLLTTDSVRP--TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65
Query: 84 Y-----CRAVSAIVYVVDAADYDNLPVSRSELHDL---LSKPSLNGIPLLVLGNKIDKPE 135
Y I V D L + L D+ NGI +L+ NK +
Sbjct: 66 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 125
Query: 136 ALSKEDLMEQMG-----LKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
A + + + + + + + +D L
Sbjct: 126 ARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQS 173
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.0 bits (144), Expect = 3e-12
Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 14/168 (8%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQPRFRSM 80
++G GKT L+ A + E+ +PTV + + L+D GQ + +
Sbjct: 14 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL 73
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
+ + + + E L K +P L++G +ID +
Sbjct: 74 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL-KEYAPNVPFLLIGTQIDLRDDPKTL 132
Query: 141 DLMEQMGLKSITDRE---------VCCYM-ISCKNSTNIDTVIDWLVK 178
+ M K I + CCY+ S + TV D +
Sbjct: 133 ARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 180
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.8 bits (141), Expect = 6e-12
Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKG----NVTIKLWDLGGQPRFRS 79
L+G GKTSLV +++ I T+G + V + +WD GQ RF +
Sbjct: 8 LLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA 67
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
+ Y R + + V D D D+ ++ + +L +V + E
Sbjct: 68 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS 127
Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
E Y S K + I+ + L K
Sbjct: 128 IQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCK 162
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.5 bits (140), Expect = 8e-12
Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 14/168 (8%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSM 80
++G GKT L+ V + + E +PTV N + + V + LWD G + +
Sbjct: 7 IVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL 66
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
I+ D+L + + N +LV GNK D
Sbjct: 67 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV-GNKKDLRNDEHTR 125
Query: 141 DLMEQMGLKSITDRE----------VCCYMISCKNSTNIDTVIDWLVK 178
+ +M + + E S K + V + +
Sbjct: 126 RELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 173
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.5 bits (140), Expect = 1e-11
Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 14/174 (8%)
Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + +PTV N T+ L+D GQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
+ + + + + + ++ P L++G +ID
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLR 120
Query: 135 EALSKEDLMEQMGLKSITDRE----------VCCYMISCKNSTNIDTVIDWLVK 178
+ S + + + K IT V S + V D +
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.7 bits (138), Expect = 1e-11
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRF-R 78
+IG N GKT L G + + T+G + R+ + + I+LWD GQ RF +
Sbjct: 7 VIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK 66
Query: 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138
SM + Y R V A+V+V D + + + + + N IP +++GNK D
Sbjct: 67 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS--- 123
Query: 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
+ + K + + S KN + D V
Sbjct: 124 AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 157
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.4 bits (137), Expect = 2e-11
Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 8/164 (4%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSM 80
++G GK++L + D PT+ + K+ + + + D GQ F +M
Sbjct: 11 VVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM 70
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
E+Y RA + V D + +L + P++++GNK D L +
Sbjct: 71 REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD----LESQ 126
Query: 141 DLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVKHSKSK 183
+ + + Y S K N+D + LV+ +
Sbjct: 127 RQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 170
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (133), Expect = 8e-11
Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 6/158 (3%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVG---FNMRKVTKGNVTIKLWDLGGQPRFRSM 80
++G GK++L + D PT+ + + + D GQ F +M
Sbjct: 10 VVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAM 69
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
E+Y R + V D + +L + P++++GNK D
Sbjct: 70 REQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVT 129
Query: 141 DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
Q + + +V S K N+D LV+
Sbjct: 130 QEEGQQLARQL---KVTYMEASAKIRMNVDQAFHELVR 164
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.6 bits (130), Expect = 3e-10
Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 7/165 (4%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLW----DLGGQPRFRS 79
+ G GK+SLV G + E IPTV R+V + +I G
Sbjct: 7 VFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAM 66
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
+ + I+ + + K + IP++++GNK D+
Sbjct: 67 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP---S 123
Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 184
++ + S K + N+ + L+ K ++
Sbjct: 124 REVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 168
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.9 bits (128), Expect = 4e-10
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 9/163 (5%)
Query: 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGF----NMRKVTKGNVTIKLWDLGGQP 75
+++ ++G GK+S++ G +++D T+G +V +V + LWD GQ
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
F ++ + Y R A V V D ++ S + IP ++ NKID +
Sbjct: 63 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK--VVAEVGDIPTALVQNKIDLLD 120
Query: 136 ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+ + ++ Y S K N+ V +L +
Sbjct: 121 ---DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 160
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.5 bits (127), Expect = 5e-10
Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 8/169 (4%)
Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN----MRKVTKGNVTIKLWDLGG 73
+E+++ L+G GK+S++ + ++ PT+G + + +WD G
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133
RFR++ Y R +A + V D + ++ + + + ++ +
Sbjct: 63 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE--LRQHGPPSIVVAIAGNKCD 120
Query: 134 PEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182
+ + + S KN+ NI+ + + + S
Sbjct: 121 LTDVREVMERDAKDY--ADSIHAIFVETSAKNAININELFIEISRRIPS 167
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 6e-10
Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 11/159 (6%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN----MRKVTKGNVTIKLWDLGGQPRFRS 79
L+G GKT+ V TG + + + T+G + +G + +WD GQ +F
Sbjct: 8 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG 67
Query: 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
+ + Y + + D + D IP+++ GNK+D + K
Sbjct: 68 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD--LVRVCENIPIVLCGNKVDIKDRKVK 125
Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+ + + Y IS K++ N + WL +
Sbjct: 126 AKSIVFH-----RKKNLQYYDISAKSNYNFEKPFLWLAR 159
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.2 bits (121), Expect = 4e-09
Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 7/159 (4%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTV---GFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
++G GK++L + D PT+ ++ + + D GQ F +M
Sbjct: 9 VVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM 68
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
E+Y R + V D + +L P++++ NK+D
Sbjct: 69 REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH---LR 125
Query: 141 DLMEQMGLKSITDREVCCYMISCKNST-NIDTVIDWLVK 178
+ G + T + S K+ N+D LV+
Sbjct: 126 KVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 164
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 7e-09
Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 3/163 (1%)
Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
E+ L ++G +GK+SL++ TG Y +++ T +
Sbjct: 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63
Query: 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137
+ + + AV + + D + + +L L + + L ++G + +
Sbjct: 64 DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGG-LALALVGTQDRISASS 122
Query: 138 SKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVKH 179
+ + D + C Y N+D V + +
Sbjct: 123 PRVV-GDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQK 164
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.0 bits (110), Expect = 1e-07
Identities = 30/174 (17%), Positives = 62/174 (35%), Gaps = 15/174 (8%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSM 80
++G GKT+L++V A + E+ +PTV N + + + + LWD G P + ++
Sbjct: 7 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV 66
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
A++ D + + L S + + +L++G K D +S
Sbjct: 67 RPLSYPDSDAVLICFDISRPETLD-SVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTL 125
Query: 141 DLMEQMGLKSITDRE----------VCCYMISCKNSTN-IDTVIDWLVKHSKSK 183
+ ++ + S S N + + +K
Sbjct: 126 VELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 47.0 bits (110), Expect = 2e-07
Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 21/176 (11%)
Query: 21 ELSLIGLQNAGKTSLVNVI-----ATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQ 74
++ L+G NAGK+SL+ + Y + P +G L D+ G
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE---VSEEERFTLADIPGI 59
Query: 75 PRFRSMWE-------RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 127
S + R+ ++YV+DAAD + P+L P LV
Sbjct: 60 IEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVA 119
Query: 128 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
NK+D E + + L + + + + +S + + + L +S
Sbjct: 120 LNKVDLLEEEAVKALADALAREGL-----AVLPVSALTGAGLPALKEALHALVRST 170
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 1e-06
Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 6/167 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQ 74
+ +++++G ++ GK+SL G + + PT+ K+ N ++L D GQ
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
+ + Y ++ + V + V + LL IP++++GNK D
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 135 EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181
+ +S S K + V ++ ++
Sbjct: 123 MERVISYEEGKALAESW---NAAFLESSAKENQTAVDVFRRIILEAE 166
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 1e-06
Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 8/169 (4%)
Query: 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG--QPR 76
E++L++ G GK++LV T + + PT+ R + + ++
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61
Query: 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN--KIDKP 134
E + R V V D D + + L + L+++GN +D
Sbjct: 62 DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 121
Query: 135 EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+S E+ + + E +C NI + L + + +
Sbjct: 122 RQVSTEEGEKLATELACAFYECS----ACTGEGNITEIFYELCREVRRR 166
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 43.9 bits (102), Expect = 2e-06
Identities = 23/163 (14%), Positives = 53/163 (32%), Gaps = 8/163 (4%)
Query: 23 SLIGLQNAGKTSLVNVI--ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
+++G N GK++L+N + + T + + ++
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 68
Query: 81 WERYCRAVSAIVYVVDAADYDNLPVSRSE----LHDLLSKPSLNGIPLLVLGNKIDKPEA 136
A + + V + +L+K P+++ NK+D +
Sbjct: 69 RAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQE 128
Query: 137 LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
+ Q + ++ IS + N+DT+ + KH
Sbjct: 129 KADLLPHLQFLASQMNFLDI--VPISAETGLNVDTIAAIVRKH 169
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 43.9 bits (102), Expect = 2e-06
Identities = 25/180 (13%), Positives = 55/180 (30%), Gaps = 26/180 (14%)
Query: 23 SLIGLQNAGKTSLVNVIATGGYSEDMIPTV---------GFNMRKVTKGNVTIKLWDLGG 73
G N GK++L+ + P V + G +
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63
Query: 74 QPRFRSMWERYCR-------------AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
Q R + + A ++ + E + L +
Sbjct: 64 QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---L 120
Query: 121 GIPLLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
IP +V NK+DK + + + + + + +++ + IS K NI+ + + + +
Sbjct: 121 DIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV 180
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 8e-06
Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 5/162 (3%)
Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVT--IKLWDLGGQPRFRSMW 81
L+G GK++L + + R + + ++D+ Q R +
Sbjct: 6 LLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLP 65
Query: 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 141
A V V D + + L + +P++++GNK D +
Sbjct: 66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR---SRE 122
Query: 142 LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+ G + S N+ + + +V+ + +
Sbjct: 123 VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.4 bits (99), Expect = 1e-05
Identities = 28/204 (13%), Positives = 63/204 (30%), Gaps = 28/204 (13%)
Query: 2 GLWEAFLNWLRSLFFKQE---MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGF---- 54
G + + + + + + +++ G +GK+S +N + G E+ G
Sbjct: 36 GNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT 95
Query: 55 --NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHD 112
+ WDL G + Y + Y D
Sbjct: 96 MERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDI--D 153
Query: 113 LLSKPSLNGIPLLVLGNKID---------KPEALSKEDLMEQM------GLKSITDREVC 157
+ S+ + K+D +P+ KE +++ + + E
Sbjct: 154 IAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPP 213
Query: 158 CYMISCKNST--NIDTVIDWLVKH 179
+++S KN + ++D L+
Sbjct: 214 IFLLSNKNVCHYDFPVLMDKLISD 237
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 41.1 bits (95), Expect = 2e-05
Identities = 20/174 (11%), Positives = 52/174 (29%), Gaps = 13/174 (7%)
Query: 21 ELSLIGLQNAGKTSLVNVI--ATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGGQPR- 76
++ L+G + GK++L++V+ A ++ T+ N+ T + + DL G
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62
Query: 77 -------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 129
R + + + P + +
Sbjct: 63 AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 122
Query: 130 KIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+K + + +E K + + IS + ++ + ++
Sbjct: 123 VANKMDMPEAAENLEA--FKEKLTDDYPVFPISAVTREGLRELLFEVANQLENT 174
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 2e-05
Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 13/175 (7%)
Query: 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN-----VTIKLW 69
+++ + LIG Q GK++L N+ A S D V TI L
Sbjct: 3 YYR----VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 58
Query: 70 DLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLG 128
D+ +C V +V + S L IP++++G
Sbjct: 59 DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 118
Query: 129 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
NK D + + S N+ + + +V+ + +
Sbjct: 119 NKSDLVRCREVSVSEGRACAVVF---DCKFIETSAAVQHNVKELFEGIVRQVRLR 170
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 40.7 bits (94), Expect = 2e-05
Identities = 29/174 (16%), Positives = 66/174 (37%), Gaps = 27/174 (15%)
Query: 20 MELSLIGLQNAGKTSLVNVIA-------------TGGYSEDMIPTVGFNMRKVTKGNVTI 66
+ + ++G N GK++L+N + T + I G R V V
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 67 KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 126
+ DL + + +A +++V+DA+ + D + LV
Sbjct: 61 ETNDLVERLGIERTLQEIEKA-DIVLFVLDASSPLD-------EEDRKILERIKNKRYLV 112
Query: 127 LGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
+ NK+D E +++E++ ++G + IS ++ + + + + +
Sbjct: 113 VINKVDVVEKINEEEIKNKLG------TDRHMVKISALKGEGLEKLEESIYRET 160
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 40.5 bits (93), Expect = 4e-05
Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 9/167 (5%)
Query: 21 ELSLIGLQNAGKTSLVNVI----ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76
E++L G N GK+S +N + S T N + + + G
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84
Query: 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVS-----RSELHDLLSKPSLNGIPLLVLGNKI 131
+S E + R + + + V ++ + GIP++V+ K
Sbjct: 85 SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144
Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
DK + + + D E + S + D + K
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK 191
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 39.7 bits (91), Expect = 5e-05
Identities = 20/168 (11%), Positives = 41/168 (24%), Gaps = 19/168 (11%)
Query: 23 SLIGLQNAGKTSLVNVI-----------ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDL 71
+++G N GK++L+N + + V +
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 68
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
V+A+V+VVD + + + +
Sbjct: 69 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 128
Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
PE K E M+S + + + L+
Sbjct: 129 KYPEEAMKAYHELLP--------EAEPRMLSALDERQVAELKADLLAL 168
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 39.4 bits (90), Expect = 7e-05
Identities = 24/168 (14%), Positives = 54/168 (32%), Gaps = 12/168 (7%)
Query: 23 SLIGLQNAGKTSLVNVI--ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
++G N GK++L N + ED ++ +
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 63
Query: 81 WERYCRAVSAIVYVVDAAD-----YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
+ + ++ AD D E L + + +++ NK +
Sbjct: 64 DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLR 123
Query: 136 ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
+E E L +S +++ N+DT+++ ++K + K
Sbjct: 124 EFEREVKPELYSLG-----FGEPIPVSAEHNINLDTMLETIIKKLEEK 166
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 39.2 bits (91), Expect = 8e-05
Identities = 32/196 (16%), Positives = 65/196 (33%), Gaps = 37/196 (18%)
Query: 17 KQEMELSLIGLQNAGKTSLV----NVIATGGYSEDMIPTVGFNMRKVTKGNVTIK----- 67
K + + IG + GKT+L ++A GG ++ N + +TI
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE 60
Query: 68 ---------LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS 118
D G + + + VV A D P+ ++ H LL++
Sbjct: 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND---GPMPQTREHLLLAR-Q 116
Query: 119 LNGIPLLVLGNKIDKPEA-----LSKEDLMEQMGLKSITDREVCCYMISCKN-------- 165
+ ++V NK D + L + ++ E + E + S
Sbjct: 117 IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPE 176
Query: 166 --STNIDTVIDWLVKH 179
++ ++D + +
Sbjct: 177 LGLKSVQKLLDAVDTY 192
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 37.1 bits (84), Expect = 5e-04
Identities = 24/169 (14%), Positives = 56/169 (33%), Gaps = 14/169 (8%)
Query: 20 MELSLIGLQNAGKTSLVNVIA------------TGGYSEDMIPTVGFNMRKVTKGNVTIK 67
+E++ G NAGK+S +N + ++ G +
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76
Query: 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 127
+ + + R++ E + S VV L ++ + ++ + LL
Sbjct: 77 VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 136
Query: 128 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176
+K+ ++ +++ + L D +V S +D + L
Sbjct: 137 ADKLASGARKAQLNMVREAVLAFNGDVQV--ETFSSLKKQGVDKLRQKL 183
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 35.9 bits (81), Expect = 9e-04
Identities = 21/160 (13%), Positives = 50/160 (31%), Gaps = 3/160 (1%)
Query: 20 MELSLIGLQNAGKTSLVNVIA-TGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
M++ + G NAGK+SL+N +A I ++ + + L +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61
Query: 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138
+ E + ++ AD V + + +
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121
Query: 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
+ E +G+ + + +S + +D + + L +
Sbjct: 122 ADITGETLGMSEVNGHAL--IRLSARTGEGVDVLRNHLKQ 159
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 184 | |||
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.98 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.98 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.98 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.97 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.97 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.97 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.97 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.97 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.96 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.96 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.95 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.94 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.94 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.94 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.94 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.93 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.93 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.92 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.92 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.92 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.91 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.91 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.9 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.9 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.9 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.89 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.89 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.88 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.88 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.88 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.86 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.85 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.85 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.82 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.81 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.79 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.78 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.78 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.77 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.76 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.66 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.65 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.62 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.58 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.56 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.54 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.06 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.04 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.02 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.99 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.99 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.73 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.47 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.46 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.46 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.33 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.32 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.29 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.29 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.27 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.27 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.22 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.16 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.05 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.97 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.92 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.92 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.89 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.87 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.83 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 97.83 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.78 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.77 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.75 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.75 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.74 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.73 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.72 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.72 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.72 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.71 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.71 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.71 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.69 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.68 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.68 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.68 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.67 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.65 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.65 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.64 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.63 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.63 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.63 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.62 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.61 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.6 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.59 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.59 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.58 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.58 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 97.52 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.52 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.52 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.52 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.51 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.49 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 97.48 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 97.46 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.45 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.45 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.43 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.42 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.42 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.41 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 97.4 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.39 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.39 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.37 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.37 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 97.37 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.37 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 97.36 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.35 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 97.34 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.33 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.31 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.31 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 97.31 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 97.28 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.26 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 97.24 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.24 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.24 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.24 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 97.21 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.19 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 97.17 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.14 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 97.12 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 97.11 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.11 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 97.1 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 97.1 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.07 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 97.01 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.94 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.92 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.89 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.87 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.86 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.84 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.8 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.73 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.73 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.71 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.69 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.68 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.64 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.6 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 96.55 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.47 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.47 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.43 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.39 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.39 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.3 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 96.29 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.29 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.29 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.27 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.25 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.21 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 96.19 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.12 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.11 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 96.1 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.07 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.98 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.98 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.91 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.9 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.88 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 95.85 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 95.82 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.76 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.74 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 95.64 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 95.58 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.54 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 95.51 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 95.45 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.45 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.26 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.17 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.11 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 94.93 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.92 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.78 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 94.6 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.52 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.52 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 94.45 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 94.43 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.16 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 93.86 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 93.64 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.6 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 93.31 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.27 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.23 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 92.78 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 92.64 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.29 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 91.99 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 91.63 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 90.94 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 90.06 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 89.33 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 88.95 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 88.88 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 88.73 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 88.67 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 88.58 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 88.25 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 86.68 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 86.4 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.48 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.04 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.74 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 83.28 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 82.44 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 82.25 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 81.41 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 80.31 |
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=1.6e-36 Score=204.91 Aligned_cols=164 Identities=68% Similarity=1.208 Sum_probs=150.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+++||+++|++|||||||++++.++.+...+.||.+.....++..++.+.+||+||++.+...+..++..++++++|||+
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 80 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDA 80 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEET
T ss_pred CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhccccc
Confidence 36899999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHH
Q 029978 98 ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
++++++.....++..+.......++|+++|+||+|+.+....+++.+.++.........+++++||++|.||+++|++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~ 160 (164)
T d1zd9a1 81 ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHH
Confidence 99999999999999888877778999999999999988778888888888777777788999999999999999999999
Q ss_pred HHhh
Q 029978 178 KHSK 181 (184)
Q Consensus 178 ~~~~ 181 (184)
+.++
T Consensus 161 ~~~k 164 (164)
T d1zd9a1 161 QHSK 164 (164)
T ss_dssp HTCC
T ss_pred HccC
Confidence 8653
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=8.6e-37 Score=209.58 Aligned_cols=178 Identities=30% Similarity=0.585 Sum_probs=151.1
Q ss_pred hHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHH
Q 029978 3 LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (184)
++.++++++ +..++.+||+++|++|||||||++++.++.+. ...+|.+..........+.+.+||++|++.+...+.
T Consensus 3 ~~~~~~~~l--~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (182)
T d1moza_ 3 IFSSMFDKL--WGSNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 79 (182)
T ss_dssp HHHHHHGGG--TTCSSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred hHHHHHHHH--hCCCceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEEEEeeCCEEEEEEecccccccchhHH
Confidence 444555433 44577899999999999999999999876654 455778878888888999999999999999999999
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEee
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.++..++++++|+|+++..++.....++..........+.|+++|+||+|+.+....+++.+.++........+++++||
T Consensus 80 ~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~S 159 (182)
T d1moza_ 80 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 159 (182)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred hhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence 99999999999999999999999999888887776778899999999999988878899999988877777788999999
Q ss_pred eCCCCCHHHHHHHHHHHhhhc
Q 029978 163 CKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~~ 183 (184)
|++|.||++++++|.+.++++
T Consensus 160 A~~g~gv~e~~~~l~~~i~~~ 180 (182)
T d1moza_ 160 AIKGEGITEGLDWLIDVIKEE 180 (182)
T ss_dssp GGGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHc
Confidence 999999999999999998864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=3.6e-35 Score=198.40 Aligned_cols=164 Identities=32% Similarity=0.594 Sum_probs=145.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+.+||+++|++|||||||+++|.+..+ ....+|.+.....++..++.+.+||+||++.++..+..+++.++++++++|+
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 79 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 79 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeec
Confidence 468999999999999999999986654 5678888888888889999999999999999988899999999999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHH
Q 029978 98 ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
++..++.....++..........+.|+++|+||+|+.+....++....+.........+++++|||++|.||++++++|.
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 159 (165)
T d1ksha_ 80 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 159 (165)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999888888887766667899999999999988777788877777666666678899999999999999999999
Q ss_pred HHhhh
Q 029978 178 KHSKS 182 (184)
Q Consensus 178 ~~~~~ 182 (184)
+.+.+
T Consensus 160 ~~i~~ 164 (165)
T d1ksha_ 160 DDISS 164 (165)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88765
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=3.5e-35 Score=199.94 Aligned_cols=168 Identities=32% Similarity=0.629 Sum_probs=148.6
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
.+++.++.+||+++|++|||||||++++.++.+. ...+|.+..........+.+.+||+||++.+...+..+++.++++
T Consensus 5 ~~~~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 83 (173)
T d1e0sa_ 5 SKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 83 (173)
T ss_dssp HHHHTTCCEEEEEEEETTSSHHHHHHHTTCCCCE-EEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEE
T ss_pred hhhhCCCeEEEEEECCCCCCHHHHHHHHhcCCCC-CccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceE
Confidence 4456788999999999999999999999877654 345667777777788889999999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|+|+++.+++..+..++....+.....+.|+++|+||+|+.+.....++.+.+++.......+++++|||++|.||++
T Consensus 84 i~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e 163 (173)
T d1e0sa_ 84 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 163 (173)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence 99999999999999999988887766667899999999999998888888988888777777788899999999999999
Q ss_pred HHHHHHHHh
Q 029978 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+|++|.+.+
T Consensus 164 ~~~~l~~~~ 172 (173)
T d1e0sa_ 164 GLTWLTSNY 172 (173)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999998765
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=1.1e-34 Score=197.87 Aligned_cols=165 Identities=31% Similarity=0.587 Sum_probs=144.3
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
..++.+||+++|++|||||||++++.++.+. ...++.+.....++..++.+.+||++|++.+...+..+++.+|++++|
T Consensus 12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 90 (176)
T d1fzqa_ 12 APDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (176)
T ss_dssp CCSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHhcCCCC-cceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEe
Confidence 3456799999999999999999999887764 344566667777888899999999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
||+++..++.....++..+.......++|+++|+||+|+.+....+++.+.++........+++++|||++|.||+++|+
T Consensus 91 ~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~ 170 (176)
T d1fzqa_ 91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN 170 (176)
T ss_dssp EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred eccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999998888887776667899999999999998877788888877666666778899999999999999999
Q ss_pred HHHHHh
Q 029978 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~~ 180 (184)
+|.+.+
T Consensus 171 ~l~~~i 176 (176)
T d1fzqa_ 171 WVCKNV 176 (176)
T ss_dssp HHHHTC
T ss_pred HHHhcC
Confidence 998753
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.3e-36 Score=202.85 Aligned_cols=163 Identities=20% Similarity=0.285 Sum_probs=132.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.+||+++|++|||||||++++.++.+...+.+|...... .++...+.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 82 (173)
T d2fn4a1 3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 82 (173)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence 456799999999999999999999999999888887653332 23344588999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|||+++++++..+..|+..+.+.....+.|+++|+||+|+..... .++...... ...+++++|||++|.||+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sak~g~gv~ 157 (173)
T d2fn4a1 83 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA-----SHHVAYFEASAKLRLNVD 157 (173)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHH
T ss_pred eecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHH-----hcCCEEEEEeCCCCcCHH
Confidence 9999999999999999988876655557899999999999865422 222222111 123469999999999999
Q ss_pred HHHHHHHHHhhhc
Q 029978 171 TVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
++|+.+++.++++
T Consensus 158 e~f~~l~~~i~k~ 170 (173)
T d2fn4a1 158 EAFEQLVRAVRKY 170 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.7e-35 Score=197.68 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=112.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|||||||++++.+..+... .++....+. .++...+.+.+||++|++.+...+..+++.+|++++|||
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d 80 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 80 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCc-CCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence 6899999999999999999987665443 344443322 234456899999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+++++++..+..|+..+........+|+++|+||+|+.+... .++..+.. ....+++++|||++|.||+++|+
T Consensus 81 ~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~~f~ 155 (168)
T d2gjsa1 81 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA-----VVFDCKFIETSAALHHNVQALFE 155 (168)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTSEEEECBTTTTBSHHHHHH
T ss_pred ccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHH-----HhcCCEEEEEeCCCCcCHHHHHH
Confidence 999999999999988887665557899999999999976432 22222111 11234799999999999999999
Q ss_pred HHHHHhhh
Q 029978 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
.+++.+..
T Consensus 156 ~l~~~i~~ 163 (168)
T d2gjsa1 156 GVVRQIRL 163 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987664
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=4.8e-35 Score=198.39 Aligned_cols=160 Identities=21% Similarity=0.328 Sum_probs=129.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+-+||+++|++|||||||++++.++.+...+.+|.+..+.. ++...+.+.+||++|++.+...+..+++.+|++++|
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence 34799999999999999999999999999999998755432 344568899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
||+++++++..+..|+.++.+.....++|+++|+||+|+.+.. ..++..+... ...+++++|||++|.||+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~g~gv~e~ 157 (168)
T d1u8za_ 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTTCTTHHHH
T ss_pred eeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHH-----HcCCeEEEEcCCCCcCHHHH
Confidence 9999999999999998888766555789999999999986542 2233322211 12346999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+.+++.+.+
T Consensus 158 f~~l~~~i~~ 167 (168)
T d1u8za_ 158 FFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 9999988764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-35 Score=198.32 Aligned_cols=162 Identities=20% Similarity=0.295 Sum_probs=129.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
++.+||+++|++|||||||++++.++.+...+.+|.+..... ++...+.+.+||++|++.+...+..+++.+|++++
T Consensus 3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (171)
T d2erya1 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL 82 (171)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence 466999999999999999999999999998888887743332 33445789999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||+++++++..+..|+..+.........|+++|+||+|+.... ..++..+.. ....+++++|||++|.||++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~~~~i~e 157 (171)
T d2erya1 83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLA-----RQLKVTYMEASAKIRMNVDQ 157 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHH
T ss_pred eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHH-----HHcCCEEEEEcCCCCcCHHH
Confidence 99999999999999998887766555789999999999986542 223332222 11234799999999999999
Q ss_pred HHHHHHHHhhhc
Q 029978 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+|+.|++.+.++
T Consensus 158 ~f~~l~~~i~k~ 169 (171)
T d2erya1 158 AFHELVRVIRKF 169 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-35 Score=199.53 Aligned_cols=161 Identities=20% Similarity=0.303 Sum_probs=129.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.+||+++|++|||||||+++++++.+...+.+|.+..... .+...+.+.+||++|++.+...+..+++.+|++++|
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 80 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 80 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence 46899999999999999999999999998999998855432 334457899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcC-CCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSK-PSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
||+++++++..+..|+..+... ....++|+++|+||+|+.+.. ..++..+.. ....+++++|||++|.||++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~-----~~~~~~~~e~Sak~~~~v~e 155 (171)
T d2erxa1 81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA-----RTWKCAFMETSAKLNHNVKE 155 (171)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHH-----HHcCCeEEEEcCCCCcCHHH
Confidence 9999999999998888776542 234689999999999986542 222222211 11234799999999999999
Q ss_pred HHHHHHHHhhhc
Q 029978 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+|+.|++.++++
T Consensus 156 ~f~~l~~~~~~~ 167 (171)
T d2erxa1 156 LFQELLNLEKRR 167 (171)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.5e-34 Score=195.11 Aligned_cols=163 Identities=18% Similarity=0.253 Sum_probs=128.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..||+++|++|||||||++++.++.++..+.+|.+.... ..+...+.+.+||++|++.+...+..+++.+|++++||
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 81 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence 468999999999999999999999999999998874443 23345578999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc----------CCCceeEEEeeeCC
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI----------TDREVCCYMISCKN 165 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~ 165 (184)
|++++++|.....++........ .++|+++|+||+|+.+.....+.......... .....+|++|||++
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt 160 (177)
T d1kmqa_ 82 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 160 (177)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred ccchhHHHHHHHHHHHHHHHHhC-CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 99999999998888777665433 67999999999999764222211111111110 01124799999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 029978 166 STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~~ 182 (184)
|.||+++|+.+.+.+.+
T Consensus 161 ~~gi~e~F~~i~~~~l~ 177 (177)
T d1kmqa_ 161 KDGVREVFEMATRAALQ 177 (177)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHhC
Confidence 99999999999988753
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.4e-34 Score=196.22 Aligned_cols=160 Identities=20% Similarity=0.363 Sum_probs=128.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--E--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.-+||+++|++|||||||++++.++.+...+.++.+..... + ....+.+.+|||||++.+...+..+++.+|++|+
T Consensus 4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il 83 (169)
T d3raba_ 4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 83 (169)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 35899999999999999999999999988888887754432 2 2334789999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||+++++++.....++...... .....|+++|+||+|+.+... .++..+.. ....+++++|||++|.||++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~gv~e 157 (169)
T d3raba_ 84 MYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLGFEFFEASAKDNINVKQ 157 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred EEECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhhHHHH-----HHcCCEEEEecCCCCcCHHH
Confidence 99999999999888887766443 336899999999999876432 23322211 11234799999999999999
Q ss_pred HHHHHHHHhhhc
Q 029978 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+|+.+++.+.++
T Consensus 158 ~f~~l~~~i~ek 169 (169)
T d3raba_ 158 TFERLVDVICEK 169 (169)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhhC
Confidence 999999988653
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.2e-35 Score=199.07 Aligned_cols=160 Identities=18% Similarity=0.269 Sum_probs=131.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.+||+++|++|||||||++++.++.+...+.||.+..+. .++...+.+.+||++|.+.+..++..+++.+|++++
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il 81 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 81 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence 35689999999999999999999999999999999886643 244456889999999999998888899999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||++++++|..+..|+..+.+.....++|+++|+||+|+.... ..++..+... ...+++++|||++|.||++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~-----~~~~~~~e~Sak~~~~v~~ 156 (167)
T d1xtqa1 82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-----SWNAAFLESSAKENQTAVD 156 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECCTTCHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHH-----HcCCEEEEEecCCCCCHHH
Confidence 99999999999999998888766555789999999999986642 2333222111 1234699999999999999
Q ss_pred HHHHHHHHhh
Q 029978 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
+|+.|++.+.
T Consensus 157 ~f~~li~~~~ 166 (167)
T d1xtqa1 157 VFRRIILEAE 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988765
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.5e-35 Score=197.55 Aligned_cols=159 Identities=18% Similarity=0.303 Sum_probs=129.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.+||+++|++|||||||+++++++.+...+.+|.+.... ..+...+.+.+||++|++.+...+..+++.++++++|
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 81 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence 5789999999999999999999999999888888874332 2334457899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
||+++++++..+..|+..+.......++|+++|+||+|+..... .++..... ....+++++|||++|.||+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sak~g~~i~e~ 156 (167)
T d1kaoa_ 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA-----EEWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSCEEEECTTCHHHHHHH
T ss_pred eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHH-----HHcCCeEEEECCCCCcCHHHH
Confidence 99999999999999988877655557899999999999866422 22221111 111236999999999999999
Q ss_pred HHHHHHHhh
Q 029978 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
|+.|++.+.
T Consensus 157 f~~i~~~i~ 165 (167)
T d1kaoa_ 157 FAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999988664
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-34 Score=195.98 Aligned_cols=161 Identities=19% Similarity=0.261 Sum_probs=131.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.+||+++|++|||||||++++.++.+.+.+.+|.+..+.. .+...+.+.+||++|++.+...+..+++.+|++++|
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv 82 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV 82 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence 45899999999999999999999999998888888744432 334558899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCC-CHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNST-NIDT 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~ 171 (184)
||++++++|..+..|+..+.+.....+.|+++|+||+|+.... ..++..+... ...+++++|||+++. ||++
T Consensus 83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~-----~~~~~~~e~Sak~~~~nV~~ 157 (169)
T d1x1ra1 83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAKDPPLNVDK 157 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCSSSCBSHHH
T ss_pred cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHH-----HcCCEEEEEcCCCCCcCHHH
Confidence 9999999999999999888766555789999999999987653 2233322211 122469999999875 9999
Q ss_pred HHHHHHHHhhhc
Q 029978 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+|+.+++.+.++
T Consensus 158 ~F~~l~~~i~~~ 169 (169)
T d1x1ra1 158 TFHDLVRVIRQQ 169 (169)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999988753
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.3e-34 Score=192.07 Aligned_cols=160 Identities=20% Similarity=0.282 Sum_probs=132.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.+||+++|++|||||||++++..+.+...+.+|.+..... .+...+.+.+||++|++.+...+..+++.+|++++|
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 81 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence 56899999999999999999999999999998888755432 345568899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
||++++++|..+..|+..+.+.....++|+++|+||+|+..... .++....... ...+++++|||++|.||+++
T Consensus 82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~e~Sak~g~gv~e~ 157 (167)
T d1c1ya_ 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ----WCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----TTSCEEEECBTTTTBSHHHH
T ss_pred eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHH----hCCCEEEEEcCCCCcCHHHH
Confidence 99999999999999998887655557899999999999976432 2222222111 12357999999999999999
Q ss_pred HHHHHHHhh
Q 029978 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
|+.+++.+.
T Consensus 158 F~~l~~~i~ 166 (167)
T d1c1ya_ 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999998765
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-34 Score=193.70 Aligned_cols=156 Identities=22% Similarity=0.394 Sum_probs=128.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.++..+.++.+..... .+...+.+.+||++|++.+...+..++..++++++||
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 689999999999999999999999999988888755543 2244588999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++..+..|+..+..... .+.|+++|+||+|+.+... .++..+... ...+++++|||++|.||+++|
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~SAk~g~~v~e~f 154 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAK-----ELNVMFIETSAKAGYNVKQLF 154 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHHH
T ss_pred ccccccchhhhHhhHHHHHHhcC-CCceEEEEecccchhhhhhhhHHHHHHHHH-----HcCCEEEEecCCCCcCHHHHH
Confidence 99999999999999888765433 6899999999999875422 222222211 123469999999999999999
Q ss_pred HHHHHHhh
Q 029978 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
+.|.+.+.
T Consensus 155 ~~i~~~l~ 162 (164)
T d1yzqa1 155 RRVAAALP 162 (164)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhhC
Confidence 99999875
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-33 Score=191.34 Aligned_cols=162 Identities=16% Similarity=0.294 Sum_probs=132.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+++||+++|++|||||||+++++++.++..+.+|.+..+.. .....+.+.+||++|++.+...+..+++.++++++|
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv 81 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence 46899999999999999999999999999888888755432 223457899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+|++++.++..+..|+..+.......++|+++|+||+|+.......+..+.+. ....+++++|||++|.||+++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gi~e~f~ 157 (166)
T d1ctqa_ 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA----RSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHHH
T ss_pred ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHH----HHhCCeEEEEcCCCCcCHHHHHH
Confidence 99999999999999988887665556899999999999866432222222211 11234699999999999999999
Q ss_pred HHHHHhhhc
Q 029978 175 WLVKHSKSK 183 (184)
Q Consensus 175 ~i~~~~~~~ 183 (184)
.|++.++++
T Consensus 158 ~i~~~i~~~ 166 (166)
T d1ctqa_ 158 TLVREIRQH 166 (166)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 999988764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-33 Score=192.14 Aligned_cols=157 Identities=22% Similarity=0.419 Sum_probs=126.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|||||||++++.++.+...+.+|++..... .+...+.+.+||++|++.+...+..+++.++++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 5799999999999999999999999999999998865543 234568999999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
||++++++|..+..|+..+.+.. .++|+++|+||+|+......++..... ....+++++|||++|.||+++|+
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sak~~~~v~e~f~ 155 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKPFL 155 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSHHHH-----SSCSSEEEEEBTTTTBTTTHHHH
T ss_pred cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999988776542 479999999999997654433322222 22455799999999999999999
Q ss_pred HHHHHhhh
Q 029978 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
.|++.+.+
T Consensus 156 ~l~~~l~~ 163 (170)
T d1i2ma_ 156 WLARKLIG 163 (170)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcc
Confidence 99987653
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-33 Score=193.49 Aligned_cols=164 Identities=18% Similarity=0.238 Sum_probs=127.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..-+||+++|++|||||||++++.++.+...+.+|++..... .....+.+.+||++|++.+...+..+++.+|++++
T Consensus 7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~il 86 (185)
T d2atxa1 7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 86 (185)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeee
Confidence 446899999999999999999999999999998888744432 23455889999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc---------C-CCceeEEEeee
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI---------T-DREVCCYMISC 163 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~Sa 163 (184)
|||++++++|.....++....+... .++|+++|+||+|+.+.....+.......... . ...+++++|||
T Consensus 87 v~d~t~~~Sf~~~~~~~~~~~~~~~-~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SA 165 (185)
T d2atxa1 87 CFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 165 (185)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred ccccchHHHHHHHHHHHHHHHHhcC-CCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecC
Confidence 9999999999988877777665433 68999999999998764211111111110000 0 01246999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
++|.||+++|+.+++.+.
T Consensus 166 k~~~gv~e~F~~li~~il 183 (185)
T d2atxa1 166 LTQKGLKTVFDEAIIAIL 183 (185)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHc
Confidence 999999999999988764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-34 Score=196.12 Aligned_cols=157 Identities=25% Similarity=0.365 Sum_probs=126.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-+||+++|++|||||||++++.++.++....++.+..... +....+.+.+|||||++.+...+..+++.++++++|
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v 84 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 84 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence 4899999999999999999999999988888877755443 234457899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++..++.....++..+.+... ...|+++|+||+|+.+... .++..+... ...+++++|||++|.||+++
T Consensus 85 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~-----~~~~~~~~~SAktg~gV~e~ 158 (171)
T d2ew1a1 85 YDITCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAKESDNVEKL 158 (171)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTTTCTTHHHH
T ss_pred eecccchhhhhhhhhhhhhccccc-ccccEEEEEeecccccccchhhhHHHHHHH-----hCCCEEEEEccCCCCCHHHH
Confidence 999999999999988887765433 5789999999999876432 222222111 11236999999999999999
Q ss_pred HHHHHHHhh
Q 029978 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
|+.|++.+.
T Consensus 159 f~~l~~~l~ 167 (171)
T d2ew1a1 159 FLDLACRLI 167 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988776543
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-34 Score=192.84 Aligned_cols=156 Identities=21% Similarity=0.305 Sum_probs=126.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-+||+++|++|||||||++++.++.+...+.++....... .+...+.+.+||++|++.+...+..+++.+|++++|
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv 83 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 83 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence 4899999999999999999999999988887766654432 334457899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++.+++.....++..+... .....|+++|+||+|+..... .++...... ...+++++|||++|.||+++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Saktg~~v~e~ 157 (166)
T d1z0fa1 84 YDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLLFLEASAKTGENVEDA 157 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHH
T ss_pred eccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHH
Confidence 9999999999998888777543 336789999999999865432 222222211 12347999999999999999
Q ss_pred HHHHHHHh
Q 029978 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
|+.|++.+
T Consensus 158 f~~i~~~i 165 (166)
T d1z0fa1 158 FLEAAKKI 165 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998865
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-34 Score=195.89 Aligned_cols=156 Identities=22% Similarity=0.405 Sum_probs=126.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--E--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|||||||+++|.++.+...+.+|.+..... . +...+.+.+||++|++.+......+++.++++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 4799999999999999999999999999999988755543 2 23347899999999999988889999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
||+++++++..+..|+..+.... .++|+++|+||+|+.+... .++..+.. ....+++++|||++|.||+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~~v~e~ 154 (164)
T d1z2aa1 82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVSEV 154 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSHHH
T ss_pred EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHHHH-----HHcCCEEEEeccCCCcCHHHH
Confidence 99999999999988888776532 4789999999999876422 22222211 112347999999999999999
Q ss_pred HHHHHHHhh
Q 029978 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
|+.|++.+.
T Consensus 155 f~~l~~~~l 163 (164)
T d1z2aa1 155 FKYLAEKHL 163 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-34 Score=193.16 Aligned_cols=159 Identities=23% Similarity=0.346 Sum_probs=130.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE----eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|||||||++++.++.++..+.+|.+...... ....+.+.+||++|++.+...+..+++.+++++++
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 85 (170)
T d1r2qa_ 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV 85 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence 58999999999999999999999999999999888666432 23347899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++.+++.....++..+.+.. .++.|+++|+||+|+..... .++..+... ...+++++|||++|.||+++
T Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~-----~~~~~~~e~SAk~g~~V~e~ 159 (170)
T d1r2qa_ 86 YDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYAD-----DNSLLFMETSAKTSMNVNEI 159 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHH
T ss_pred eccchhhHHHHHHHHhhhhhhcc-CCCceEEeecccccccccccccHHHHHHHHH-----hcCCEEEEeeCCCCCCHHHH
Confidence 99999999999988888775533 36899999999999876532 222222111 12347999999999999999
Q ss_pred HHHHHHHhhhc
Q 029978 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
|+.|.+.+.++
T Consensus 160 f~~l~~~i~~n 170 (170)
T d1r2qa_ 160 FMAIAKKLPKN 170 (170)
T ss_dssp HHHHHHTSCCC
T ss_pred HHHHHHHHhhC
Confidence 99999887653
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.6e-34 Score=192.55 Aligned_cols=158 Identities=20% Similarity=0.325 Sum_probs=129.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE----eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.+||+++|.+|||||||++++.++.+...+.+|........ ......+.+||++|++.+...+..+++.++++++
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 82 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence 578999999999999999999999999999888887555432 2234678899999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||++++++|..+..|+....... ..+.|+++|+||+|+.+.. ..++..+.. ....+++++|||++|.||++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~SAk~~~nV~e 156 (167)
T d1z0ja1 83 VYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAKDYA-----DSIHAIFVETSAKNAININE 156 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHH
T ss_pred EeeechhhhhhhHHHhhhhhhhcc-CCcceEEEecccchhccccchhHHHHHHHH-----HHcCCEEEEEecCCCCCHHH
Confidence 999999999999988887765443 3689999999999997542 223322211 11235799999999999999
Q ss_pred HHHHHHHHhh
Q 029978 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
+|..|.+.+.
T Consensus 157 ~f~~l~~~i~ 166 (167)
T d1z0ja1 157 LFIEISRRIP 166 (167)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhCC
Confidence 9999998774
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-33 Score=192.74 Aligned_cols=165 Identities=19% Similarity=0.251 Sum_probs=129.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
++.+||+++|++|||||||+++|+.+.+...+.+|++..... .+...+.+.+||++|++.+...+..+++.+|++++
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence 567999999999999999999999999999999988744332 34455789999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc----------CCCceeEEEeee
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI----------TDREVCCYMISC 163 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa 163 (184)
|||+++.++|..+..++....+.. ..++|+++|+||+|+.+.....+.......... ....++|++|||
T Consensus 83 v~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA 161 (183)
T d1mh1a_ 83 CFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (183)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred eeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence 999999999999887666655443 357999999999998654211111111111100 012357999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 029978 164 KNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~~ 182 (184)
++|.||+++|+.+++.+.+
T Consensus 162 k~~~~V~e~F~~l~~~il~ 180 (183)
T d1mh1a_ 162 LTQRGLKTVFDEAIRAVLC 180 (183)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCCcCHHHHHHHHHHHHcC
Confidence 9999999999999987654
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-34 Score=194.30 Aligned_cols=158 Identities=25% Similarity=0.330 Sum_probs=122.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE----eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|||||||++++.++.+...+.+|.+...... +...+.+.+||++|++.+...+..+++.+|++++|
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 82 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV 82 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence 58999999999999999999999999999999888555442 23458999999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
||++++++|..+..|+..+.... ....|+++|+||+|+.... ..++..+... ...+++++|||++|.||+++
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~-----~~~~~~~e~Sak~~~~v~e~ 156 (167)
T d1z08a1 83 YDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAKHYHTSAKQNKGIEEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEEBTTTTBSHHHH
T ss_pred EeCCchhHHHhhhhhhhhccccc-ccccceeeeccccccccccccchHHHHHHHH-----HcCCeEEEEecCCCcCHHHH
Confidence 99999999999988887664432 2578999999999987643 2333322211 12347999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+.|++.+.+
T Consensus 157 F~~l~~~i~~ 166 (167)
T d1z08a1 157 FLDLCKRMIE 166 (167)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999987753
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-34 Score=194.52 Aligned_cols=159 Identities=21% Similarity=0.237 Sum_probs=125.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|||||||++++.++.+...+.||++..+.. .+...+.+.+||++|++.+. ....+++.++++++||
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~ 80 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY 80 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence 5899999999999999999999999999999998865433 23445889999999998764 4566888999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCC-CHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNST-NIDTV 172 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~l 172 (184)
|+++++++..+..++..........+.|+++|+||+|+.... ..++..+... ...+++++|||++|. ||+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~-----~~~~~~~e~Saktg~gnV~e~ 155 (168)
T d2atva1 81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYECSACTGEGNITEI 155 (168)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEECCTTTCTTCHHHH
T ss_pred ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHH-----HhCCeEEEEccccCCcCHHHH
Confidence 999999999998776555444444689999999999997542 2333322211 113469999999998 69999
Q ss_pred HHHHHHHhhhc
Q 029978 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
|..+++.+.++
T Consensus 156 F~~l~~~i~~~ 166 (168)
T d2atva1 156 FYELCREVRRR 166 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.7e-33 Score=190.83 Aligned_cols=164 Identities=16% Similarity=0.202 Sum_probs=127.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.+||+++|++|||||||++++..+.+...+.+|.+..... .+...+.+.+||++|++++...+..+++.+|++++|
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 81 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 81 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence 35899999999999999999999999999999998754432 233457899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCC---------Cc-CCCceeEEEeeeC
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK---------SI-TDREVCCYMISCK 164 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~Sa~ 164 (184)
||++++++|..+..|+........ .+.|+++|+||+|+.+.....+........ .. .....++++|||+
T Consensus 82 ~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 160 (191)
T d2ngra_ 82 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL 160 (191)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred cccchHHHHHHHHHHHHHHHhhcC-CCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence 999999999999887776655433 679999999999986542111111000000 00 0123469999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 029978 165 NSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~~ 182 (184)
+|.||+++|+.+++.+.+
T Consensus 161 ~~~~V~e~f~~l~~~~~~ 178 (191)
T d2ngra_ 161 TQKGLKNVFDEAILAALE 178 (191)
T ss_dssp TCTTHHHHHHHHHHHHTS
T ss_pred CCcCHHHHHHHHHHHHhc
Confidence 999999999999887654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-33 Score=192.46 Aligned_cols=160 Identities=20% Similarity=0.279 Sum_probs=129.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE----eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|++|||||||++++.++.+...+.+|.+...... +.....+.+||+||++++...+..+++.++++++
T Consensus 4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (174)
T d2bmea1 4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL 83 (174)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence 358999999999999999999999999988888877655432 2345789999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH-hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+|.++++++..+..++..+..... .++|+++|+||+|+...... .+....+. ....+++++|||++|.||+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~~~gi~e~ 158 (174)
T d2bmea1 84 VYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRFA----QENELMFLETSALTGENVEEA 158 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHH
T ss_pred EEecccchhHHHHhhhhcccccccC-CceEEEEEEecccccchhchhhhHHHHHH----HhCCCEEEEeeCCCCcCHHHH
Confidence 9999999999999888888765433 68999999999998654322 11111111 112357999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+.+.+.+.+
T Consensus 159 f~~l~~~i~~ 168 (174)
T d2bmea1 159 FVQCARKILN 168 (174)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887653
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=100.00 E-value=2.6e-31 Score=181.07 Aligned_cols=175 Identities=27% Similarity=0.505 Sum_probs=147.1
Q ss_pred HHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhc
Q 029978 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYC 85 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 85 (184)
.|++.+.+++.++.+||+++|.+|||||||++++.++++.. ..++.+.........+..+.+||+++++.....+....
T Consensus 2 ~~~~~~~~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 80 (177)
T d1zj6a1 2 ILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYY 80 (177)
T ss_dssp HHHHHHHHHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEE-EECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHH
T ss_pred hhHHHHHHHhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceeEEEEeecceEEEEeccccccccccchhhhh
Confidence 35666678888999999999999999999999999877643 34455555666677889999999999998888889999
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
..++++++++|.++.+++.....++............|+++|+||+|+......+++.+..+........+++++|||++
T Consensus 81 ~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~t 160 (177)
T d1zj6a1 81 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALT 160 (177)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred ccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCC
Confidence 99999999999999999988887777776666668999999999999988888888888888777777788999999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 029978 166 STNIDTVIDWLVKHSK 181 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~ 181 (184)
|.||++++++|.+.++
T Consensus 161 g~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 161 GEGLCQGLEWMMSRLK 176 (177)
T ss_dssp TBTHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999998864
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-33 Score=191.72 Aligned_cols=158 Identities=20% Similarity=0.322 Sum_probs=124.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.-+||+++|++|||||||++++.++.+...+.++.+..... .+...+.+.+||++|++.+...+..+++.++++++
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~ 82 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 82 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence 34899999999999999999999999988877776644332 33345789999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||+++++++.....++..+.+... .++|+++|+||+|+.+... .+....... ....++++|||++|.|+++
T Consensus 83 v~d~~~~~S~~~~~~~~~~i~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~g~~i~e 156 (175)
T d2f9la1 83 VYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNNLSFIETSALDSTNVEE 156 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEECCCcccchhHHHHHHHHHHhcC-CCCcEEEEEeeecccccccchHHHHHHhhc-----ccCceEEEEecCCCcCHHH
Confidence 9999999999999999888765543 6799999999999976432 222121111 1234799999999999999
Q ss_pred HHHHHHHHhh
Q 029978 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
+|+.+.+.+.
T Consensus 157 ~f~~l~~~i~ 166 (175)
T d2f9la1 157 AFKNILTEIY 166 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=2.4e-33 Score=190.27 Aligned_cols=157 Identities=25% Similarity=0.401 Sum_probs=127.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|||||||++++.++.+...+.+|.+..+. .+. ...+.+.+||++|++.+...+..++..+|++++|
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence 479999999999999999999999999999999875443 333 3447899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-----HhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-----KEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
||+++++++..+..|+........ ...|+++|+||+|+.+... .++..+.. ....+++++|||++|.||
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~gV 156 (170)
T d1ek0a_ 83 YDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDMLQEGGERKVAREEGEKLA-----EEKGLLFFETSAKTGENV 156 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTH
T ss_pred EeCCcccchhhhhhhhhhhccccc-cccceeeeecccccccccchhhhhHHHHHHHH-----HHcCCEEEEecCCCCcCH
Confidence 999999999999988876655433 6789999999999865422 22222111 122457999999999999
Q ss_pred HHHHHHHHHHhh
Q 029978 170 DTVIDWLVKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~~~ 181 (184)
+++|..|.+.+.
T Consensus 157 ~e~F~~i~~~i~ 168 (170)
T d1ek0a_ 157 NDVFLGIGEKIP 168 (170)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHHHhc
Confidence 999999987664
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.5e-33 Score=192.80 Aligned_cols=160 Identities=21% Similarity=0.360 Sum_probs=128.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----Ee----------eCCEEEEEEeCCCcccchHhHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VT----------KGNVTIKLWDLGGQPRFRSMWER 83 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~----------~~~~~~~~~D~~g~~~~~~~~~~ 83 (184)
.-+||+++|++|||||||++++.++.+...+.+|....+.. .+ ...+.+.+|||+|++.+..++..
T Consensus 4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~ 83 (186)
T d2f7sa1 4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA 83 (186)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence 35899999999999999999999999888877776644322 11 12367999999999999999999
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEe
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++.++++++|||+++++++..+..|+..+.........|+++|+||+|+..... .++..+... ...+++++|
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~-----~~~~~~~e~ 158 (186)
T d2f7sa1 84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-----KYGIPYFET 158 (186)
T ss_dssp HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEEE
T ss_pred HHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHH-----HcCCEEEEE
Confidence 9999999999999999999999998888887766667889999999999976432 222222211 123469999
Q ss_pred eeCCCCCHHHHHHHHHHHhhh
Q 029978 162 SCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
||++|.||+++|+.+.+.+.+
T Consensus 159 Sak~~~~i~e~f~~l~~~i~~ 179 (186)
T d2f7sa1 159 SAATGQNVEKAVETLLDLIMK 179 (186)
T ss_dssp BTTTTBTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=4.4e-33 Score=192.79 Aligned_cols=159 Identities=24% Similarity=0.373 Sum_probs=128.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.-+||+++|++|||||||++++.++.+...+.+|.+..... +....+.+.+|||||++.+..++..+++.++++++
T Consensus 5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~ 84 (194)
T d2bcgy1 5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 84 (194)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 34899999999999999999999999999888888755432 33456889999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||+++++++.....++..+.+. ...+.|+++|+||+|+.+... .++...... ...+++++|||++|.||++
T Consensus 85 v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~SAk~g~gi~e 158 (194)
T d2bcgy1 85 VYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSALDSTNVED 158 (194)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTTTCTTHHH
T ss_pred EEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhhh-----ccCcceEEEecCcCccHHH
Confidence 99999999999988887776543 347899999999999976432 222222211 1234699999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+.+++.+.+
T Consensus 159 ~f~~l~~~i~~ 169 (194)
T d2bcgy1 159 AFLTMARQIKE 169 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.4e-33 Score=190.79 Aligned_cols=157 Identities=20% Similarity=0.300 Sum_probs=122.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+...+.++....... .......+.+||++|++.+...+..+++.+|++++||
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~ 83 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 83 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEE
Confidence 799999999999999999999999888877666543332 2233478999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|++++++|.....++..+..... .++|+++|+||+|+.... ..++..... ....+++++|||++|.||+++|
T Consensus 84 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~a-----~~~~~~~~e~Sa~tg~~V~e~f 157 (173)
T d2a5ja1 84 DITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSAKTACNVEEAF 157 (173)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHHHHH
T ss_pred eecChHHHHhHHHHHHHHHHhCC-CCCeEEEEecCCchhhhhhhHHHHHHHHH-----HHcCCEEEEecCCCCCCHHHHH
Confidence 99999999999999888765433 689999999999986542 222222211 1123479999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.+++.+.+
T Consensus 158 ~~i~~~i~~ 166 (173)
T d2a5ja1 158 INTAKEIYR 166 (173)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.98 E-value=7.1e-31 Score=175.86 Aligned_cols=160 Identities=28% Similarity=0.571 Sum_probs=138.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+||+++|++|||||||++++.++++......+. ......+...+.+.+||++|.+.+......+...++++++++|..+
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~ 79 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG-FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSS-CCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccccee-eEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecC
Confidence 589999999999999999999888765544333 3344566788999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 100 YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
..++.....++.++.........|+++++||.|+.+....+++.............+++++|||++|.||+++|++|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~ 159 (160)
T d1r8sa_ 80 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (160)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhc
Confidence 99999999998888877666889999999999999887878888877776666777899999999999999999999875
Q ss_pred h
Q 029978 180 S 180 (184)
Q Consensus 180 ~ 180 (184)
+
T Consensus 160 l 160 (160)
T d1r8sa_ 160 L 160 (160)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=3.2e-32 Score=186.13 Aligned_cols=159 Identities=18% Similarity=0.260 Sum_probs=126.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|||||||++++..+.++..+.||....... .+...+.+.+||++|++.+...+..+++.+|++++||
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence 4789999999999999999999999999998987643332 3345689999999999999988999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--------------HhHHHHHcCCCCcCCCceeEEEe
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--------------KEDLMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
|++++++|..+..+|........ .+.|+++||||+|+..... .++...... .....+|++|
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~----~~~~~~y~E~ 156 (179)
T d1m7ba_ 82 DISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK----QIGAATYIEC 156 (179)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HHTCSEEEEC
T ss_pred ecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHH----HhCCCeEEEE
Confidence 99999999999888877654433 5899999999999865311 111111100 0012469999
Q ss_pred eeCCCCC-HHHHHHHHHHHhhh
Q 029978 162 SCKNSTN-IDTVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~-v~~l~~~i~~~~~~ 182 (184)
||++|.| |+++|+.+.+.+.+
T Consensus 157 SAk~~~n~i~~~F~~~~~~~l~ 178 (179)
T d1m7ba_ 157 SALQSENSVRDIFHVATLACVN 178 (179)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eCCCCCcCHHHHHHHHHHHHhc
Confidence 9999985 99999999988764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=8.5e-32 Score=183.34 Aligned_cols=160 Identities=25% Similarity=0.416 Sum_probs=114.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEe-----eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
-+||+++|++|||||||++++.++.+...+.+|.+....... .....+.+||++|++.+...+..+.+.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 379999999999999999999999998888887765554322 234779999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhc---CCCCCCCcEEEEeeCCCccCcC---CHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 94 VVDAADYDNLPVSRSELHDLLS---KPSLNGIPLLVLGNKIDKPEAL---SKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~piilv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+||++++.+|.....|+.++.. .....++|+++|+||+|+.+.. ..++.. .+.. .....++++|||++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~-~~~~---~~~~~~~~e~SA~~g~ 157 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ-ELAK---SLGDIPLFLTSAKNAI 157 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH-HHHH---HTTSCCEEEEBTTTTB
T ss_pred EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHH-HHHH---HcCCCeEEEEeCCCCc
Confidence 9999999999998888876643 2334688999999999987532 222222 1111 0112458999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
||+++|+.|.+.+.+
T Consensus 158 gv~e~f~~l~~~~l~ 172 (175)
T d1ky3a_ 158 NVDTAFEEIARSALQ 172 (175)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999876553
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.4e-31 Score=180.71 Aligned_cols=160 Identities=22% Similarity=0.383 Sum_probs=131.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|++|||||||++++.++.+...+.++.+..... ++...+.+.+|||||++.+...+..++..+|++++
T Consensus 6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~ 85 (177)
T d1x3sa1 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 85 (177)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 45899999999999999999999999988888877654432 33445789999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|||++++.++.....++..+.........|+++++||.|...... .++..+... ...+++++|||++|.||+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~tg~gv~e~ 160 (177)
T d1x3sa1 86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSMLFIEASAKTCDGVQCA 160 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHH
T ss_pred EEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHH-----HCCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999887776667899999999999866432 222222111 12346999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++++.+.+
T Consensus 161 f~~l~~~l~~ 170 (177)
T d1x3sa1 161 FEELVEKIIQ 170 (177)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcc
Confidence 9999887664
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.3e-32 Score=182.92 Aligned_cols=159 Identities=25% Similarity=0.397 Sum_probs=123.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++++++++..+.+|.+..... ++...+.+.+|||||++.+...+..+++.++++++||
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVY 82 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence 799999999999999999999999999888888765543 3345688999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|+++++++..+..++....... ....|+++++||.|+.+.....+..+.... ...+++++|||++|.||+++|+.
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~e~f~~ 157 (166)
T d1g16a_ 83 DITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNEIFFT 157 (166)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH----HHTCCEEECBTTTTBSHHHHHHH
T ss_pred ECCCccCHHHHHhhhhhhhccc-cCcceeeeecchhhhhhhhhhHHHHHHHHH----hcCCeEEEECCCCCCCHHHHHHH
Confidence 9999999988887776665443 367899999999998765443333332221 12346999999999999999999
Q ss_pred HHHHhhhc
Q 029978 176 LVKHSKSK 183 (184)
Q Consensus 176 i~~~~~~~ 183 (184)
|.+.+.++
T Consensus 158 l~~~i~~k 165 (166)
T d1g16a_ 158 LAKLIQEK 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99988753
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.4e-32 Score=185.33 Aligned_cols=160 Identities=26% Similarity=0.421 Sum_probs=118.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCC-CCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSED-MIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~-~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
+..+||+++|++|||||||++++.++++... ..++.+..... .+...+.+++|||+|++.+...+..+++.+|++
T Consensus 4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~ 83 (170)
T d2g6ba1 4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 83 (170)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence 3468999999999999999999999887654 45555544433 223447899999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|||+++++++.....++........ ...|+++|+||+|+..... .++...... ...+++++|||++|.||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~~k~d~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~g~gi 157 (170)
T d2g6ba1 84 LLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAKTGLNV 157 (170)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTH
T ss_pred EEEecCCcccchhhhhhhhhhhhhccC-CCceEEEEEeeechhhcccccHHHHHHHHH-----HcCCEEEEEeCCCCcCH
Confidence 999999999999999888877655433 6789999999999877533 222222211 12346999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++|+.|++.+++
T Consensus 158 ~e~f~~l~~~i~k 170 (170)
T d2g6ba1 158 DLAFTAIAKELKR 170 (170)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999988753
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.9e-33 Score=191.32 Aligned_cols=160 Identities=22% Similarity=0.365 Sum_probs=99.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--E--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+.-+||+++|.+|||||||++++.++.+.....+|.+..... + +...+.+.+|||||++.+...+..+++.+++++
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i 83 (173)
T d2fu5c1 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 83 (173)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence 345899999999999999999999988888877777644432 3 334578999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH--hHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|||++++.++..+..++..+... ...+.|+++|+||.|+...... ++..... ....+++++|||++|.||+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~g~gv~ 157 (173)
T d2fu5c1 84 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVE 157 (173)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHH
T ss_pred EEEECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHHHHH-----HhcCCEEEEEeCCCCCCHH
Confidence 999999999999998888777543 3377999999999999764332 2222211 1224579999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|++|++.+.+
T Consensus 158 e~f~~l~~~i~~ 169 (173)
T d2fu5c1 158 NAFFTLARDIKA 169 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=4.3e-31 Score=181.27 Aligned_cols=160 Identities=23% Similarity=0.378 Sum_probs=127.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE----eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|.+|||||||++++.++.+...+.+|.+...... ....+.+.+||++|+..+...+..++..++++++++
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence 7899999999999999999999999999999987655432 234578999999999998888889999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcC---CCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSK---PSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~---~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|.++..++..+..|+..+... ....++|+++|+||+|+.+.....+....... ....+++++|||++|.||+++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~e~Sak~~~gI~e~ 159 (184)
T d1vg8a_ 83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY---SKNNIPYFETSAKEAINVEQA 159 (184)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH---HTTSCCEEECBTTTTBSHHHH
T ss_pred cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHH---HhcCCeEEEEcCCCCcCHHHH
Confidence 999999999888887666432 33357899999999998765332322222211 122457999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+.+++.+.+
T Consensus 160 f~~l~~~i~~ 169 (184)
T d1vg8a_ 160 FQTIARNALK 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.7e-30 Score=175.76 Aligned_cols=159 Identities=24% Similarity=0.388 Sum_probs=123.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-+||+++|++|||||||++++.++.+...+.+|.+..... .+...+.+.+||++|+......+......+++++++
T Consensus 6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~ 85 (174)
T d1wmsa_ 6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLT 85 (174)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEE
Confidence 4799999999999999999999999999988888765433 223347889999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHh---cCCCCCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 95 VDAADYDNLPVSRSELHDLL---SKPSLNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~---~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|.+++.++..+..|+..+. ......+.|+++|+||+|+.+.. ..++..+.... ...+++++|||++|.||+
T Consensus 86 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~----~~~~~~~e~Sak~~~gI~ 161 (174)
T d1wmsa_ 86 FSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----NGDYPYFETSAKDATNVA 161 (174)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----TTCCCEEECCTTTCTTHH
T ss_pred EeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHH----cCCCeEEEEcCCCCcCHH
Confidence 99999999999888876553 33444679999999999986532 23333322211 123469999999999999
Q ss_pred HHHHHHHHHhh
Q 029978 171 TVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
++|+.+++.+.
T Consensus 162 e~f~~l~~~il 172 (174)
T d1wmsa_ 162 AAFEEAVRRVL 172 (174)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.4e-32 Score=183.52 Aligned_cols=160 Identities=19% Similarity=0.199 Sum_probs=118.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCC-CCCCCccceee----EEeeCCEEEEEEeCCC---cccchHhHHHhccCCC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSE-DMIPTVGFNMR----KVTKGNVTIKLWDLGG---QPRFRSMWERYCRAVS 89 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~-~~~~t~~~~~~----~~~~~~~~~~~~D~~g---~~~~~~~~~~~~~~~~ 89 (184)
..+||+++|++|||||||++++.+..+.. ...+|.+.... .++...+.+.+||+++ ++++ ....+++.+|
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~ 79 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD 79 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence 45899999999999999999999776543 33344443222 2334457788999775 4443 4567789999
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|||+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++..+ +. ....+++++|||++|.
T Consensus 80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~-~a----~~~~~~~~e~Sak~g~ 154 (172)
T d2g3ya1 80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-CA----VVFDCKFIETSAAVQH 154 (172)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-HH----HHHTCEEEECBTTTTB
T ss_pred eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHH-HH----HHcCCeEEEEeCCCCc
Confidence 999999999999999999998888776566789999999999987642 2232221 11 1123479999999999
Q ss_pred CHHHHHHHHHHHhhhcC
Q 029978 168 NIDTVIDWLVKHSKSKS 184 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~~~ 184 (184)
||+++|+.+++.+..+|
T Consensus 155 ~i~~~f~~l~~~i~~rr 171 (172)
T d2g3ya1 155 NVKELFEGIVRQVRLRR 171 (172)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHcc
Confidence 99999999999886543
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.97 E-value=5.2e-29 Score=167.95 Aligned_cols=167 Identities=34% Similarity=0.657 Sum_probs=145.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.+||+++|.+|||||||++++.++.+.. ..+|.+..........+.+.+||.+|.+.............+++++++|
T Consensus 3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T d1upta_ 3 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVD 81 (169)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCcc-eecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhh
Confidence 467999999999999999999999887764 4466666667777888999999999999988888899999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+.+..++.....++............|+++|+||.|+.......++...++........+++++|||++|.||+++|++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l 161 (169)
T d1upta_ 82 SCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 161 (169)
T ss_dssp TTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHH
T ss_pred hhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999988888877777666666789999999999999888888888887766667778899999999999999999999
Q ss_pred HHHhhhcC
Q 029978 177 VKHSKSKS 184 (184)
Q Consensus 177 ~~~~~~~~ 184 (184)
.+.+++++
T Consensus 162 ~~~l~~k~ 169 (169)
T d1upta_ 162 VETLKSRQ 169 (169)
T ss_dssp HHHHHTCC
T ss_pred HHHHHhCC
Confidence 99988754
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=3.8e-31 Score=178.45 Aligned_cols=153 Identities=26% Similarity=0.451 Sum_probs=121.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchH-hHHHhccCCCEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRS-MWERYCRAVSAIVY 93 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~ 93 (184)
-+||+++|++|||||||++++.++.+...+.++.+..... .......+.+||++|...+.. .+..+++.+|++++
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il 81 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence 4799999999999999999999999998888887754432 334457899999999876654 56778899999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCC---CCC
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKN---STN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~ 168 (184)
|||++++++|..+..|+.++.+.....++|+++|+||+|+.+.. ..++..+.. ....+++++|||++ +.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~SAkt~~~~~~ 156 (165)
T d1z06a1 82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA-----DTHSMPLFETSAKNPNDNDH 156 (165)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEECCSSSGGGGSC
T ss_pred EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHH-----HHCCCEEEEEecccCCcCcC
Confidence 99999999999999999888776666789999999999986642 233332221 11234699999997 569
Q ss_pred HHHHHHHH
Q 029978 169 IDTVIDWL 176 (184)
Q Consensus 169 v~~l~~~i 176 (184)
|+++|+.|
T Consensus 157 V~e~F~~l 164 (165)
T d1z06a1 157 VEAIFMTL 164 (165)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999876
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.7e-29 Score=171.79 Aligned_cols=154 Identities=16% Similarity=0.237 Sum_probs=114.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.+||+++|++|||||||++++.++.+.... +|....+. .++...+.+.+|||+|++.+ .+++.+|++++|
T Consensus 4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~-~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV 77 (175)
T d2bmja1 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLE-KTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV 77 (175)
T ss_dssp CEEEEEEECCTTTTHHHHHHHHHHSCCCCCC-CSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCCcC-CccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence 4699999999999999999999999886543 44433332 23445588999999998874 467889999999
Q ss_pred EeCCCCCChHHHHHHHHHHh--cCCCCCCCcEEEEeeCCCccCcCC----HhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 95 VDAADYDNLPVSRSELHDLL--SKPSLNGIPLLVLGNKIDKPEALS----KEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~--~~~~~~~~piilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
||++++++|..+..|...+. ......+.|+++|+||.|+..... .++...... ....+++++|||++|.|
T Consensus 78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~----~~~~~~~~e~SAk~~~~ 153 (175)
T d2bmja1 78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA----DMKRCSYYETCATYGLN 153 (175)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH----TSTTEEEEEEBTTTTBT
T ss_pred eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHH----HhCCCeEEEeCCCCCcC
Confidence 99999999999988776653 333446789999999988754321 222222111 12345799999999999
Q ss_pred HHHHHHHHHHHhh
Q 029978 169 IDTVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~~~ 181 (184)
|+++|..+++.+.
T Consensus 154 v~~~F~~l~~~i~ 166 (175)
T d2bmja1 154 VDRVFQEVAQKVV 166 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987664
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=5.6e-28 Score=162.10 Aligned_cols=157 Identities=33% Similarity=0.601 Sum_probs=136.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
||+++|++|||||||++++.++.+. ...||.+.........+....+||++|...+......+...++++++++|.++.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 80 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADP 80 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccch
Confidence 7999999999999999999987765 567888888888888888999999999999988899999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc-------CCCceeEEEeeeCCCCCHHHHH
Q 029978 101 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-------TDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
..+.....++..........+.|+++++||.|+.......++.+.+.+... ....+++++|||++|.||+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~ 160 (166)
T d2qtvb1 81 ERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160 (166)
T ss_dssp GGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHH
T ss_pred hhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHH
Confidence 998888888888877777789999999999999887777887777654332 2345689999999999999999
Q ss_pred HHHHH
Q 029978 174 DWLVK 178 (184)
Q Consensus 174 ~~i~~ 178 (184)
++|.+
T Consensus 161 ~~l~~ 165 (166)
T d2qtvb1 161 QWLSQ 165 (166)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 99975
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.95 E-value=5.2e-27 Score=160.33 Aligned_cols=171 Identities=33% Similarity=0.613 Sum_probs=132.4
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhcc
Q 029978 7 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR 86 (184)
Q Consensus 7 ~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (184)
+++++ .+.++..||+++|++|||||||++++.++.+.. ..++.+.....+........+||+.++..+...+....+
T Consensus 3 ~~~~~--~~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (186)
T d1f6ba_ 3 VLQFL--GLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLP 79 (186)
T ss_dssp HHHHH--TCTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGG
T ss_pred hHHhc--cccCCCCEEEEECCCCCCHHHHHHHHhCCCCcc-eecccccceeEEEecccccccccccchhhhhhHHhhhhc
Confidence 45555 344788999999999999999999998777653 345666666667777889999999999988888889999
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC------------cCCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS------------ITDR 154 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~ 154 (184)
..+.+++++|.++...+......+..........++|+++++||.|+.......++.+..+... ....
T Consensus 80 ~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (186)
T d1f6ba_ 80 AINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNAR 159 (186)
T ss_dssp GCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSC
T ss_pred ccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcC
Confidence 9999999999999888888777777766666668899999999999988777777776665321 1233
Q ss_pred ceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 155 EVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
..++++|||++|.|++++|++|.+.+
T Consensus 160 ~~~~~~~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 160 PLEVFMCSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence 56899999999999999999998765
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=2.7e-27 Score=163.74 Aligned_cols=163 Identities=20% Similarity=0.324 Sum_probs=130.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+++||+++|..|||||||++++..+.+. +.||++.....+....+.+.+||++|++.+...+..+++.++++++++|.
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~ 78 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVAL 78 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeec
Confidence 4689999999999999999999988774 56899998888888999999999999999999999999999999999999
Q ss_pred CCCCC----------hHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC------------------CHhHHH-----H
Q 029978 98 ADYDN----------LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL------------------SKEDLM-----E 144 (184)
Q Consensus 98 ~~~~~----------~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~------------------~~~~~~-----~ 144 (184)
++.+. +.+....|..++......+.|+++++||.|+.... +..... .
T Consensus 79 ~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 158 (200)
T d2bcjq2 79 SEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKM 158 (200)
T ss_dssp GGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHH
T ss_pred cchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHH
Confidence 87643 33445666777666666889999999999985321 111111 1
Q ss_pred HcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 145 QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
.........+.+.+++|||++|.||+++|+.+.+.+.+
T Consensus 159 f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~ 196 (200)
T d2bcjq2 159 FVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 196 (200)
T ss_dssp HHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence 12233344556778999999999999999999888764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=3.6e-26 Score=155.65 Aligned_cols=155 Identities=21% Similarity=0.177 Sum_probs=109.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccc--------hHhHHHhccCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF--------RSMWERYCRAV 88 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~~ 88 (184)
-.|+++|.+|||||||++++++... ......|...........+..+.+|||||.... .......++.+
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~a 85 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV 85 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccccc
Confidence 4699999999999999999997653 233334444555556677889999999996432 23334557889
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|+++... ....++...++.. ..+.|+++|+||+|+.... ++..+.+.... ....++++||++|.|
T Consensus 86 d~il~v~D~~~~~~--~~~~~i~~~l~~~-~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~---~~~~~~~iSA~~~~g 157 (178)
T d1wf3a1 86 NAVVWVVDLRHPPT--PEDELVARALKPL-VGKVPILLVGNKLDAAKYP--EEAMKAYHELL---PEAEPRMLSALDERQ 157 (178)
T ss_dssp SEEEEEEETTSCCC--HHHHHHHHHHGGG-TTTSCEEEEEECGGGCSSH--HHHHHHHHHTS---TTSEEEECCTTCHHH
T ss_pred cceeeeechhhhhc--ccccchhhheecc-ccchhhhhhhcccccccCH--HHHHHHHHhhc---ccCceEEEecCCCCC
Confidence 99999999987543 3344444444332 2468999999999996542 33333222111 123588999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029978 169 IDTVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~~~~ 182 (184)
+++|++.|.+.+.+
T Consensus 158 i~~L~~~i~~~lpe 171 (178)
T d1wf3a1 158 VAELKADLLALMPE 171 (178)
T ss_dssp HHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999988754
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.94 E-value=2.9e-27 Score=162.99 Aligned_cols=161 Identities=22% Similarity=0.329 Sum_probs=123.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+++||+++|..|||||||+++|..+.++ |.+.....++.....+.+||++|++.+...+..+++.++++++|+|+
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~~-----t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~ 75 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHEA-----GTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 75 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHSC-----CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEG
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC-----CccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEee
Confidence 4689999999999999999999866554 44555667788899999999999999999999999999999999999
Q ss_pred CCCCChH----------HHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc-----------------CCHhHHHH----H-
Q 029978 98 ADYDNLP----------VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA-----------------LSKEDLME----Q- 145 (184)
Q Consensus 98 ~~~~~~~----------~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-----------------~~~~~~~~----~- 145 (184)
++.+++. +....+..+.......+.|+++++||+|+... ....+... .
T Consensus 76 ~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 155 (195)
T d1svsa1 76 SDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQF 155 (195)
T ss_dssp GGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHH
T ss_pred cccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHH
Confidence 9877653 33455666666666678999999999986331 11111111 1
Q ss_pred cCC-CCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 146 MGL-KSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 146 ~~~-~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
... .....+.+++++|||+++.||+++|+.+.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~ 194 (195)
T d1svsa1 156 EDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194 (195)
T ss_dssp HTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence 111 12233466788999999999999999999887653
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=4.5e-26 Score=152.66 Aligned_cols=150 Identities=16% Similarity=0.158 Sum_probs=108.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccc--------hHhHHHhccC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF--------RSMWERYCRA 87 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~ 87 (184)
+++|+++|++|||||||++++++.... ..+..+.......+...+..+.++|+||.... ......+++.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 80 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence 589999999999999999999976543 22333333444456778889999999995332 1223455788
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++++|..+...+.....+...+... . .++|+++|+||+|+.+.... .......+++++||++|.
T Consensus 81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~-~~~~iilv~NK~Dl~~~~~~----------~~~~~~~~~~~iSAk~~~ 148 (161)
T d2gj8a1 81 ADRVLFMVDGTTTDAVDPAEIWPEFIARL-P-AKLPITVVRNKADITGETLG----------MSEVNGHALIRLSARTGE 148 (161)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHHS-C-TTCCEEEEEECHHHHCCCCE----------EEEETTEEEEECCTTTCT
T ss_pred ccccceeeccccccchhhhhhhhhhhhhc-c-cccceeeccchhhhhhhHHH----------HHHhCCCcEEEEECCCCC
Confidence 99999999999988776665443333322 2 46899999999998654221 111234579999999999
Q ss_pred CHHHHHHHHHHHh
Q 029978 168 NIDTVIDWLVKHS 180 (184)
Q Consensus 168 ~v~~l~~~i~~~~ 180 (184)
||++|+++|.+.+
T Consensus 149 gi~~L~~~l~~~l 161 (161)
T d2gj8a1 149 GVDVLRNHLKQSM 161 (161)
T ss_dssp THHHHHHHHHHHC
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998753
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=2.1e-26 Score=159.37 Aligned_cols=161 Identities=19% Similarity=0.317 Sum_probs=119.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
.+||+++|++|||||||++++. +...+.||++.....++.....+.+||++|++.++..+..+++.+++++++++.+
T Consensus 2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~ 78 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS 78 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETT
T ss_pred eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcC
Confidence 5899999999999999999994 5567788999888889999999999999999999999999999999999999999
Q ss_pred CCCCh----------HHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc------------------CCHhHHHHHcC---
Q 029978 99 DYDNL----------PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA------------------LSKEDLMEQMG--- 147 (184)
Q Consensus 99 ~~~~~----------~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~------------------~~~~~~~~~~~--- 147 (184)
+...+ .....++..++......++|+++++||+|+.+. .+.+...+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f 158 (200)
T d1zcba2 79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF 158 (200)
T ss_dssp CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred CcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHH
Confidence 87543 344556677777766789999999999998542 11122221111
Q ss_pred ---CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 148 ---LKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 148 ---~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
........+.+++|||+++.||+++|+.+.+.+.+
T Consensus 159 ~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~ 196 (200)
T d1zcba2 159 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 196 (200)
T ss_dssp HTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence 11122345567789999999999999999887654
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.93 E-value=1.2e-25 Score=153.11 Aligned_cols=162 Identities=17% Similarity=0.185 Sum_probs=112.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCC---------CCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDM---------IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA 87 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~---------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 87 (184)
.+.++|+++|++++|||||+++|++....... ..+.......+...+..+.++|+||+..+.......+..
T Consensus 3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~ 82 (179)
T d1wb1a4 3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 82 (179)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence 45689999999999999999999853211110 111122233355677899999999999999888999999
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh---HHHHHcCCCCcCCCceeEEEeeeC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE---DLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+|++++++|+.+....+. +..+..+.. .++|+++|+||+|+.+.+..+ +..+.+..........+++++||+
T Consensus 83 ~d~~ilv~d~~~g~~~~~-~~~~~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~ 157 (179)
T d1wb1a4 83 IDLALIVVDAKEGPKTQT-GEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 157 (179)
T ss_dssp CCEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred ccccccccccccccchhh-hhhhhhhhh----cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence 999999999987543332 222222222 468999999999997653221 222222111122235679999999
Q ss_pred CCCCHHHHHHHHHHHhhhc
Q 029978 165 NSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~~~ 183 (184)
+|.|+++|++.|.+.+.+.
T Consensus 158 ~g~gi~eL~~~I~~~l~~~ 176 (179)
T d1wb1a4 158 TGFGVDELKNLIITTLNNA 176 (179)
T ss_dssp TCTTHHHHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHhcCCcc
Confidence 9999999999999988753
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=7.8e-25 Score=148.03 Aligned_cols=153 Identities=21% Similarity=0.220 Sum_probs=102.1
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCccc---------chHhHHHhccCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR---------FRSMWERYCRAV 88 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~~ 88 (184)
.|+++|++|||||||+++|++.... .....|.......++.....+.+||++|... +.......+..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 6899999999999999999865532 3344455556666788889999999998321 223344556889
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|+++++.+.+....... ..+..++.. .++|+++|+||+|+.+....+...+.... ...+++++||++|.|
T Consensus 82 d~i~~~~~~~~~~~~~~--~~~~~~l~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~i~iSAk~g~g 151 (171)
T d1mkya1 82 DLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREFEREVKPELYSL-----GFGEPIPVSAEHNIN 151 (171)
T ss_dssp SEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHHHHHTHHHHGGG-----SSCSCEECBTTTTBS
T ss_pred cEEEEeecccccccccc--ccccccccc---ccccccccchhhhhhhhhhhHHHHHHHhc-----CCCCeEEEecCCCCC
Confidence 99999999877544332 223333222 46899999999999754332222222221 122468899999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029978 169 IDTVIDWLVKHSKSK 183 (184)
Q Consensus 169 v~~l~~~i~~~~~~~ 183 (184)
+++|+++|.+.+.+.
T Consensus 152 id~L~~~i~~~l~e~ 166 (171)
T d1mkya1 152 LDTMLETIIKKLEEK 166 (171)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999988764
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=1.3e-24 Score=148.78 Aligned_cols=164 Identities=19% Similarity=0.101 Sum_probs=109.3
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccc------------hH
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF------------RS 79 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~------------~~ 79 (184)
..++.++|+++|++|||||||++++++... ......+...........+..+.++|+||.... ..
T Consensus 4 ~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 83 (186)
T d1mkya2 4 EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNY 83 (186)
T ss_dssp CCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhH
Confidence 345679999999999999999999997553 222333333344456667788999999995432 23
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCcee
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVC 157 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~ 157 (184)
.....++.+|++++++|+..... .....+..+... .+.|+|+|+||+|+..... .+++.+.+..........+
T Consensus 84 ~~~~~~~~~dvii~v~d~~~~~~--~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (186)
T d1mkya2 84 RVVDSIEKADVVVIVLDATQGIT--RQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP 158 (186)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhcCCEEEEeecccccch--hhHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCe
Confidence 44556688999999999986443 222333333322 4689999999999865432 2333333332222223457
Q ss_pred EEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 158 CYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 158 ~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
++++||++|.|+++|++.|.+.+.++
T Consensus 159 i~~vSa~~g~gv~~L~~~i~~~~~~~ 184 (186)
T d1mkya2 159 LIFTSADKGWNIDRMIDAMNLAYASY 184 (186)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999998887764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=4.1e-24 Score=142.84 Aligned_cols=146 Identities=16% Similarity=0.230 Sum_probs=109.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCccc--------c-hHhHHHhccC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------F-RSMWERYCRA 87 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~-~~~~~~~~~~ 87 (184)
+||+++|.+|||||||++++++... ......|...........+..+.+|||||... . .......+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 6899999999999999999986542 23334444455556777889999999999321 1 1223444678
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|++++...... .....+ ...|+++++||+|+.+....+++.+.++.. .+++++||++|.
T Consensus 81 ad~ii~v~d~~~~~~~~~~-~~~~~~------~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~------~~~~~vSA~~g~ 147 (160)
T d1xzpa2 81 ADIVLFVLDASSPLDEEDR-KILERI------KNKRYLVVINKVDVVEKINEEEIKNKLGTD------RHMVKISALKGE 147 (160)
T ss_dssp CSEEEEEEETTSCCCHHHH-HHHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHTCS------TTEEEEEGGGTC
T ss_pred CCEEEEEEeCCCCcchhhh-hhhhhc------ccccceeeeeeccccchhhhHHHHHHhCCC------CcEEEEECCCCC
Confidence 9999999999987664433 222222 357899999999999888888887777642 358999999999
Q ss_pred CHHHHHHHHHH
Q 029978 168 NIDTVIDWLVK 178 (184)
Q Consensus 168 ~v~~l~~~i~~ 178 (184)
|+++|++.|.+
T Consensus 148 gi~~L~~~I~k 158 (160)
T d1xzpa2 148 GLEKLEESIYR 158 (160)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 99999999875
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=9.5e-25 Score=148.78 Aligned_cols=156 Identities=22% Similarity=0.254 Sum_probs=103.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeE-EeeCCEEEEEEeCCCccc-------chHhHHHhccCCCE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRK-VTKGNVTIKLWDLGGQPR-------FRSMWERYCRAVSA 90 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~-~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~~~ 90 (184)
+|+|+|.+|||||||+|+|++.... .....|....... .......+.+|||||... ........+..++.
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 4899999999999999999865442 2223333333322 233456899999999432 22334456788999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhc-CCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLS-KPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
+++++|..... ......+...+.. .....++|+++|+||+|+......++..+.+.. ...+++++||++|.|+
T Consensus 83 ~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~iSA~tg~gi 156 (180)
T d1udxa2 83 LLYVLDAADEP-LKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAR-----EGLAVLPVSALTGAGL 156 (180)
T ss_dssp EEEEEETTSCH-HHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHT-----TTSCEEECCTTTCTTH
T ss_pred hhhhccccccc-ccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHh-----cCCeEEEEEcCCCCCH
Confidence 99999986532 2222222111111 111235799999999999876544554444432 2446999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
++|++.|.+.+.+
T Consensus 157 d~L~~~i~~~l~~ 169 (180)
T d1udxa2 157 PALKEALHALVRS 169 (180)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.91 E-value=6.7e-25 Score=149.87 Aligned_cols=157 Identities=20% Similarity=0.255 Sum_probs=99.1
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCccc---------------chHhHHHhc
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR---------------FRSMWERYC 85 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------------~~~~~~~~~ 85 (184)
.|+++|.+|||||||+|++++........+........+...+ +.++||||... .........
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~~~--~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKN--HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA 79 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEETT--EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccccccccc--ceecccCCceeccccccccccccchhhhhhhhhcc
Confidence 5899999999999999999976654333332222344455554 56899999421 112233456
Q ss_pred cCCCEEEEEEeCCCCCCh---------HHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCC
Q 029978 86 RAVSAIVYVVDAADYDNL---------PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDR 154 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~ 154 (184)
+.+|++++|+|+...... ......+...+. ..++|+++|+||+|+..... .+...+.... .....
T Consensus 80 ~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~---~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~ 155 (184)
T d2cxxa1 80 KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR---ELDIPTIVAVNKLDKIKNVQEVINFLAEKFEV-PLSEI 155 (184)
T ss_dssp GGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH---HTTCCEEEEEECGGGCSCHHHHHHHHHHHHTC-CGGGH
T ss_pred cccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH---HcCCCEEEEEeeeehhhhHHHHHHHHHHHhcc-ccccc
Confidence 789999999998642110 111111112221 24789999999999864321 1122222222 12223
Q ss_pred ceeEEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 155 EVCCYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
...++++||++|.|+++|++.|.+.+.++
T Consensus 156 ~~~~~~vSA~~g~gi~~L~~~i~~~l~e~ 184 (184)
T d2cxxa1 156 DKVFIPISAKFGDNIERLKNRIFEVIRER 184 (184)
T ss_dssp HHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence 44688999999999999999999998763
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.90 E-value=2.9e-24 Score=150.82 Aligned_cols=162 Identities=19% Similarity=0.262 Sum_probs=125.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
++..||+++|+.|||||||++++..+. ..||++.....++.+++.+.+||++|++.++..+..+++.++++++++|
T Consensus 4 k~~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d 79 (221)
T d1azta2 4 RATHRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVA 79 (221)
T ss_dssp HHSEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEE
T ss_pred hhcCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEE
Confidence 456899999999999999999997554 4578898888888899999999999999999999999999999999999
Q ss_pred CCCCC----------ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC------CH---------------------
Q 029978 97 AADYD----------NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL------SK--------------------- 139 (184)
Q Consensus 97 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~------~~--------------------- 139 (184)
.++.+ ...+....+..++......++|+++++||+|+.... ..
T Consensus 80 ~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g 159 (221)
T d1azta2 80 SSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPG 159 (221)
T ss_dssp TTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTT
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCC
Confidence 98643 234455667777877777899999999999985421 00
Q ss_pred -----hHH--------HHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 140 -----EDL--------MEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 140 -----~~~--------~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
.+. .+.........+.+..+++||++..||+.+|+.+.+.+.+
T Consensus 160 ~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~ 215 (221)
T d1azta2 160 EDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 215 (221)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence 011 1111122223345667789999999999999887766653
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.90 E-value=8.9e-24 Score=145.69 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=105.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCC-----CCCCccceee--E---------------------EeeCCEEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSED-----MIPTVGFNMR--K---------------------VTKGNVTIKL 68 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~-----~~~t~~~~~~--~---------------------~~~~~~~~~~ 68 (184)
++.++|+++|+.++|||||+++|++...... ..-|....+. . .......+.+
T Consensus 3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T d1kk1a3 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence 4568999999999999999999985321111 1111111111 0 1112356899
Q ss_pred EeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC-
Q 029978 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG- 147 (184)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~- 147 (184)
+||||+++|.....+.+..+|++++++|+.+.......++.+..+... ...+++++.||+|+.+.....+..+.+.
T Consensus 83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~~ 159 (195)
T d1kk1a3 83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE 159 (195)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHHH
Confidence 999999999988888899999999999998753323223333222221 1245788999999976532222221111
Q ss_pred -CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 148 -LKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 148 -~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+.......++++++||++|.|+++|++.|.+.+.
T Consensus 160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence 1112224568999999999999999999988764
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=1.6e-23 Score=144.41 Aligned_cols=156 Identities=18% Similarity=0.166 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEeeCCEEEEEEeCCCccc-------------chHhHHHh
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPR-------------FRSMWERY 84 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~ 84 (184)
.+|+|+|.+|||||||++++++........+ +......... ....+.+.|++|... ........
T Consensus 24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (195)
T d1svia_ 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI-INDELHFVDVPGYGFAKVSKSEREAWGRMIETYITT 102 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE-ETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccc-ccccceEEEEEeeccccccccccchhhhHHhhhhcc
Confidence 4899999999999999999997543222111 1111111111 122345567665211 11223344
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
...++++++++|++.... .....+..++.. .++|+++|+||+|+.+....++..+.+..........+++++||+
T Consensus 103 ~~~~~~vi~viD~~~~~~--~~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~ 177 (195)
T d1svia_ 103 REELKAVVQIVDLRHAPS--NDDVQMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSE 177 (195)
T ss_dssp CTTEEEEEEEEETTSCCC--HHHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTT
T ss_pred ccchhhhhhhhhcccccc--cccccccccccc---ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCC
Confidence 566799999999976432 332333333332 468999999999997665544444433322223345579999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 029978 165 NSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~ 181 (184)
+|.|++++++.|.+.+.
T Consensus 178 ~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 178 TKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TCTTHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999998875
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.89 E-value=4.5e-23 Score=143.14 Aligned_cols=163 Identities=20% Similarity=0.166 Sum_probs=104.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCC-----CCCCccceee--E--------------------------EeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSED-----MIPTVGFNMR--K--------------------------VTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~-----~~~t~~~~~~--~--------------------------~~~~~ 63 (184)
++.++|+++|+.++|||||+++|++...... ...+...... . .....
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 4558999999999999999999985211100 0000000000 0 00112
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHH
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLM 143 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~ 143 (184)
..+.++|+||+.+|.......+..+|++++|+|+.+.-.-...+..+...... .-.|+|+++||+|+.+.....+..
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~ 162 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY 162 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHH
Confidence 46899999999999988888889999999999998742112222233322221 124889999999997653222211
Q ss_pred HHcC--CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 144 EQMG--LKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 144 ~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
..+. +.......++++++||++|.||++|++.|..++..
T Consensus 163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence 1111 11222345689999999999999999999988754
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.89 E-value=9.6e-24 Score=148.73 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=103.0
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCCC--CCCccceee------------------EEeeCCEEEEEEeCCCcccchHhH
Q 029978 22 LSLIGLQNAGKTSLVNVIATGGYSEDM--IPTVGFNMR------------------KVTKGNVTIKLWDLGGQPRFRSMW 81 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~~~~~~~--~~t~~~~~~------------------~~~~~~~~~~~~D~~g~~~~~~~~ 81 (184)
|+|+|++++|||||++++++....... ..+...... .+......+.++||||++.|....
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~ 87 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR 87 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence 999999999999999999853211111 111110111 123456789999999999998877
Q ss_pred HHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH---hHH---------------H
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---EDL---------------M 143 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~---------------~ 143 (184)
...+..+|++++|+|+.+.- .........++.. .++|+|+|+||+|+...... .+. .
T Consensus 88 ~~~~~~~D~~ilVvda~~g~--~~~~~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 162 (227)
T d1g7sa4 88 KRGGALADLAILIVDINEGF--KPQTQEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD 162 (227)
T ss_dssp CSSSBSCSEEEEEEETTTCC--CHHHHHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred hhcccccceEEEEEecccCc--ccchhHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence 77889999999999998643 3322232222222 57899999999998764311 000 0
Q ss_pred -------HHc---C-------CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 144 -------EQM---G-------LKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 144 -------~~~---~-------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
..+ . .........+++++||++|.|+++|++.|.....+
T Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~ 218 (227)
T d1g7sa4 163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (227)
T ss_dssp HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 000 0 01112345689999999999999999999887653
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=1e-21 Score=136.42 Aligned_cols=158 Identities=25% Similarity=0.326 Sum_probs=107.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEe---eCCEEEEEEeCCCcccch-HhHHHhccCCCEEEEEEe
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT---KGNVTIKLWDLGGQPRFR-SMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~v~d 96 (184)
+|+++|++|||||||+++|+++.+.... +|.+....... .....+.+||++|++.++ ..+..+...++++++|+|
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D 80 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD 80 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence 6899999999999999999988776543 55554444333 345789999999998875 466778899999999999
Q ss_pred CCCCCCh-HHHHHHHHHHhcC--CCCCCCcEEEEeeCCCccCcCCHhHHHHHcC--------------------------
Q 029978 97 AADYDNL-PVSRSELHDLLSK--PSLNGIPLLVLGNKIDKPEALSKEDLMEQMG-------------------------- 147 (184)
Q Consensus 97 ~~~~~~~-~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~~~~~~~~~-------------------------- 147 (184)
+++..++ .....++..++.. ....++|+++|+||+|++.....+++.+.+.
T Consensus 81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
T d2fh5b1 81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQ 160 (207)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCC
T ss_pred cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhh
Confidence 9975543 3333444444321 2235689999999999987666554443220
Q ss_pred CCC--------cCCCceeEEEeeeCCCCC------HHHHHHHHHHH
Q 029978 148 LKS--------ITDREVCCYMISCKNSTN------IDTVIDWLVKH 179 (184)
Q Consensus 148 ~~~--------~~~~~~~~~~~Sa~~~~~------v~~l~~~i~~~ 179 (184)
... .......++++|++.+.+ ++++-+++.++
T Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~ 206 (207)
T d2fh5b1 161 LGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 206 (207)
T ss_dssp SSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hcccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence 000 001235789999999886 77777777654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=9.4e-23 Score=139.31 Aligned_cols=156 Identities=19% Similarity=0.239 Sum_probs=101.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEee-CCEEEEEEeCCCcccc----h---HhHHHhccCCCE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRF----R---SMWERYCRAVSA 90 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~----~---~~~~~~~~~~~~ 90 (184)
+|+|+|.+|||||||+|+|++.... .....|.......... ....+.+|||||.... . ......+..++.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 82 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence 5899999999999999999865532 2233344444433333 3357899999995321 1 122233466888
Q ss_pred EEEEEeCCCCCChHHHHHH----HHHHhcCCCCCCCcEEEEeeCCCccCcCCH-hHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 91 IVYVVDAADYDNLPVSRSE----LHDLLSKPSLNGIPLLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~----~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++++++....+........ ...........++|+++|+||+|+.+.... +.+.+.+. ...+++++||++
T Consensus 83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~------~~~~v~~iSA~~ 156 (185)
T d1lnza2 83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------DDYPVFPISAVT 156 (185)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------SCCCBCCCSSCC
T ss_pred hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhc------cCCcEEEEECCC
Confidence 8888887765543332221 122233344467899999999999765221 22222222 234689999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 029978 166 STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~~ 182 (184)
|.|+++|++.|.+.+.+
T Consensus 157 g~Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 157 REGLRELLFEVANQLEN 173 (185)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhhhh
Confidence 99999999999998864
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.88 E-value=1.4e-22 Score=139.24 Aligned_cols=160 Identities=16% Similarity=0.068 Sum_probs=109.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC----------------CC--CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG----------------GY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~----------------~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
+.++|+++|+.++|||||++++++. .. +.+..-|+......+...+..+.++||||+.+|..
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~ 81 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence 4689999999999999999999731 01 11122233344455667788999999999999998
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH-h----HHHHHcCCCCcCCC
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-E----DLMEQMGLKSITDR 154 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 154 (184)
...+.+..+|++++|+|+.+...-+. ++.+...... ...|+|+++||+|+.+.... + ++...+........
T Consensus 82 ~~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 157 (196)
T d1d2ea3 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (196)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence 88888999999999999987433221 2223322222 23589999999999753211 1 22222211122234
Q ss_pred ceeEEEeeeCCC----------CCHHHHHHHHHHHhh
Q 029978 155 EVCCYMISCKNS----------TNIDTVIDWLVKHSK 181 (184)
Q Consensus 155 ~~~~~~~Sa~~~----------~~v~~l~~~i~~~~~ 181 (184)
.++++++||++| .|+.+|++.|.+++.
T Consensus 158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP 194 (196)
T d1d2ea3 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (196)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence 568999999998 589999999887764
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=7.6e-21 Score=136.12 Aligned_cols=114 Identities=19% Similarity=0.203 Sum_probs=87.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc--CC------------------CCCCCCCCccceeeEEeeCCEEEEEEeCCCcccc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT--GG------------------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~--~~------------------~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (184)
+--+|+|+|+.++|||||+.+++. +. ...+...|+......+.+.+.+++++||||+.+|
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 84 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence 334799999999999999999972 10 1122334555666778899999999999999999
Q ss_pred hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
.......++.+|++|+|+|+.+.-..+.. ..|..... .++|.|+++||+|....
T Consensus 85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~-~~w~~a~~----~~lP~i~fINKmDr~~a 138 (276)
T d2bv3a2 85 TIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQAEK----YKVPRIAFANKMDKTGA 138 (276)
T ss_dssp STTHHHHHHHCCEEEEEEETTTSSCHHHH-HHHHHHHT----TTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHhhhheEEeccccCCcchhHH-HHHHHHHH----cCCCEEEEEeccccccc
Confidence 99999999999999999999875443332 33333333 57999999999998764
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=1.1e-21 Score=135.68 Aligned_cols=143 Identities=16% Similarity=0.126 Sum_probs=97.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC--------CCC-----------CCCCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG--------GYS-----------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~--------~~~-----------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
+.++|+++|++++|||||+++|+.. +.. .+..-|+......+.+.+..++++||||+.+|.
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~ 81 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 81 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence 5689999999999999999999721 110 111345555666778888999999999999999
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCC-Hh----HHHHHcCCCCcC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALS-KE----DLMEQMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 152 (184)
....+.++.+|++++|+|+.+.-..+.. +.+..... .++| +++++||+|+.+... .+ ++.+.+......
T Consensus 82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~-~~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 156 (204)
T d2c78a3 82 KNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 156 (204)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCHHHH-HHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCCEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 9888999999999999999875443332 22222222 3566 677899999965321 12 222222222223
Q ss_pred CCceeEEEeeeCC
Q 029978 153 DREVCCYMISCKN 165 (184)
Q Consensus 153 ~~~~~~~~~Sa~~ 165 (184)
....++++.|+..
T Consensus 157 ~~~i~~i~~sa~~ 169 (204)
T d2c78a3 157 GDEVPVIRGSALL 169 (204)
T ss_dssp TTTSCEEECCHHH
T ss_pred cccceeeeeechh
Confidence 3456788888863
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.85 E-value=3.1e-20 Score=129.67 Aligned_cols=149 Identities=15% Similarity=0.100 Sum_probs=98.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc--CCCC---------------------------------CCCCCCccceeeEEee
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT--GGYS---------------------------------EDMIPTVGFNMRKVTK 61 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~--~~~~---------------------------------~~~~~t~~~~~~~~~~ 61 (184)
+.-++++++|+.++|||||+.+|+. +... .....|.......+..
T Consensus 7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 86 (222)
T d1zunb3 7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 86 (222)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence 4568999999999999999999972 1110 0011122223334555
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCC--
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALS-- 138 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-- 138 (184)
.+..+.++|+||++.|.....+....+|++++|+|+.....-+ ......++.. .++| +|++.||+|+.+...
T Consensus 87 ~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q--t~e~~~~~~~---~gv~~iiv~vNK~D~~~~~~~~ 161 (222)
T d1zunb3 87 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ--TRRHSYIASL---LGIKHIVVAINKMDLNGFDERV 161 (222)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH--HHHHHHHHHH---TTCCEEEEEEECTTTTTSCHHH
T ss_pred cceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc--hHHHHHHHHH---cCCCEEEEEEEcccccccccee
Confidence 6789999999999999999899999999999999998753322 2222333322 3444 888999999976432
Q ss_pred HhHHH----HHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 139 KEDLM----EQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 139 ~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
.++.. ..+.........++++|+||++|.|+.
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 162 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred hhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence 12222 222112222346789999999999983
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.82 E-value=2.1e-19 Score=128.31 Aligned_cols=109 Identities=20% Similarity=0.167 Sum_probs=83.4
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC-CC-------------------CCCCCCccceeeEEeeCCEEEEEEeCCCcccchHh
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGG-YS-------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~-~~-------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
+|+++|+.++|||||+.+++... .. .....|+......+.+.+.+++++||||+.+|...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e 83 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE 83 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence 68999999999999999997211 00 11233555566678889999999999999999999
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
....++.+|++++|+|+.+.-..+.. ..|....+ .++|.++++||+|..
T Consensus 84 ~~~al~~~D~avlvvda~~Gv~~~t~-~~~~~~~~----~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 84 IRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hhhhhcccCceEEEeeccCCccchhH-HHHHhhhh----ccccccccccccccc
Confidence 99999999999999999875443332 22333322 468999999999974
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=4.8e-19 Score=119.89 Aligned_cols=155 Identities=20% Similarity=0.218 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccchHh--H-------HHhccC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM--W-------ERYCRA 87 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~-------~~~~~~ 87 (184)
-.|+++|.+|||||||+|+|++.... .....+..............+..+|++|....... . ......
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 85 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhh
Confidence 35899999999999999999976532 11222222233344456677888898875432111 1 112245
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++.++++.|.... ..........+.. ...|.++|+||+|..... .+...............+++++||++|.
T Consensus 86 ~~~~l~~~d~~~~--~~~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~--~~~~~~~~~~~~~~~~~~~~~vSA~~g~ 157 (179)
T d1egaa1 86 VELVIFVVEGTRW--TPDDEMVLNKLRE----GKAPVILAVNKVDNVQEK--ADLLPHLQFLASQMNFLDIVPISAETGL 157 (179)
T ss_dssp EEEEEEEEETTCC--CHHHHHHHHHHHS----SSSCEEEEEESTTTCCCH--HHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred cceeEEEEecCcc--chhHHHHHHHhhh----ccCceeeeeeeeeccchh--hhhhhHhhhhhhhcCCCCEEEEeCcCCC
Confidence 6677778887653 2333333333333 457899999999987542 2221111111111223479999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
|+++|++.|.+++.+
T Consensus 158 gi~~L~~~i~~~lpe 172 (179)
T d1egaa1 158 NVDTIAAIVRKHLPE 172 (179)
T ss_dssp THHHHHHHHHTTCCB
T ss_pred CHHHHHHHHHHhCCC
Confidence 999999999998864
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.79 E-value=1.3e-19 Score=128.38 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=90.0
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHc--CC-------------------------------CCCCCCCCccceeeE
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIAT--GG-------------------------------YSEDMIPTVGFNMRK 58 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~--~~-------------------------------~~~~~~~t~~~~~~~ 58 (184)
+....++.++|+++|+.++|||||+.+|+. +. .......++......
T Consensus 17 ~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~ 96 (245)
T d1r5ba3 17 KDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY 96 (245)
T ss_dssp HHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE
T ss_pred HHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccc
Confidence 444556778999999999999999999951 10 111122233333344
Q ss_pred EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC-----ChH-HHHHHHHHHhcCCCCCCC-cEEEEeeCC
Q 029978 59 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD-----NLP-VSRSELHDLLSKPSLNGI-PLLVLGNKI 131 (184)
Q Consensus 59 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----~~~-~~~~~~~~~~~~~~~~~~-piilv~nK~ 131 (184)
+......+.+.|+||+..|.....+....+|++++|+|+.... ... ..+..+ .++.. .++ ++++++||+
T Consensus 97 ~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l-~l~~~---~~i~~iiv~iNKm 172 (245)
T d1r5ba3 97 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART---QGINHLVVVINKM 172 (245)
T ss_dssp EECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH---TTCSSEEEEEECT
T ss_pred cccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHH-HHHHH---cCCCeEEEEEEcC
Confidence 5667789999999999999999899999999999999998631 000 111222 22221 234 478999999
Q ss_pred CccCcCC----HhHHHHHcCCC------CcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 132 DKPEALS----KEDLMEQMGLK------SITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 132 D~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+..... .+++.+++... ......++++++||++|.||.++++
T Consensus 173 D~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 173 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence 9975432 12222222210 0112246899999999999987643
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.78 E-value=9.4e-19 Score=122.62 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=95.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc--C-------------------------------CCCCCCCCCccceeeEEeeCCE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT--G-------------------------------GYSEDMIPTVGFNMRKVTKGNV 64 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~--~-------------------------------~~~~~~~~t~~~~~~~~~~~~~ 64 (184)
+.++|+++|+.++|||||+.+|+. + ........|+......++..++
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~ 81 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 81 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence 468999999999999999998861 0 0122333444445556677888
Q ss_pred EEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCC------hHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-
Q 029978 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN------LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL- 137 (184)
Q Consensus 65 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~- 137 (184)
.++++||||+.+|.....+.++.+|++++|+|+.+... ....++.+. +.... ...++|+++||+|+....
T Consensus 82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~-~~~~~--~~~~iIv~iNK~D~~~~~~ 158 (224)
T d1jnya3 82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHII-LAKTM--GLDQLIVAVNKMDLTEPPY 158 (224)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHH-HHHHT--TCTTCEEEEECGGGSSSTT
T ss_pred eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHH-HHHHh--CCCceEEEEEcccCCCccc
Confidence 99999999999999999999999999999999986310 111111111 11111 234689999999987532
Q ss_pred CH---hHHHHHcC----CCCcCCCceeEEEeeeCCCCCHHH
Q 029978 138 SK---EDLMEQMG----LKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 138 ~~---~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
.. +++.+.+. .........+++++||..|.||.+
T Consensus 159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 11 11111111 111223456799999999999853
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=4.2e-19 Score=122.96 Aligned_cols=118 Identities=23% Similarity=0.322 Sum_probs=82.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHh----ccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY----CRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~----~~~~~~~i~v 94 (184)
.-+|+|+|++|||||||+|+|.+..+.+. .|.......++..+..+.+||+||++.+......+ ...++.++++
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~--tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT--VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 80 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCB--CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCe--EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceE
Confidence 45899999999999999999998765432 22223333445556678999999998765544433 4556888888
Q ss_pred EeCCC-CCChHHHHHHHHHH---hcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 95 VDAAD-YDNLPVSRSELHDL---LSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 95 ~d~~~-~~~~~~~~~~~~~~---~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
+|+.+ ..++.....++..+ .......++|+++|+||+|+.....
T Consensus 81 vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~ 128 (209)
T d1nrjb_ 81 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 128 (209)
T ss_dssp EETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred EEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence 88764 55666665554322 2333447899999999999977544
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=6e-19 Score=124.37 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=101.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc--CCC-------------------------------CCCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT--GGY-------------------------------SEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~--~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 63 (184)
+..++|+++|+.++|||||+.+++. +.. ..+..-|+......+...+
T Consensus 4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~ 83 (239)
T d1f60a3 4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 83 (239)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence 3458999999999999999999962 110 1224456666677788889
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCC-----h-HHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCc
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN-----L-PVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEA 136 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-----~-~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~ 136 (184)
++++++||||+.+|...+.+.+..+|++++|+|+....- . ...+..+. ++.. .++| +|+++||+|+.+.
T Consensus 84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~-~~~~---~gv~~iiv~iNKmD~~~~ 159 (239)
T d1f60a3 84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFT---LGVRQLIVAVNKMDSVKW 159 (239)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHH---TTCCEEEEEEECGGGGTT
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHH-HHHH---cCCCeEEEEEECCCCCCC
Confidence 999999999999999999999999999999999975210 0 01122222 2222 2454 8889999999764
Q ss_pred CCH--hHHHHH----cCCCCcCCCceeEEEeeeCCCCCH
Q 029978 137 LSK--EDLMEQ----MGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 137 ~~~--~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
... +++.++ +.........++++++|+..|.|+
T Consensus 160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni 198 (239)
T d1f60a3 160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 198 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcc
Confidence 321 122121 111111123467899999999886
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=3.2e-18 Score=116.27 Aligned_cols=164 Identities=15% Similarity=0.098 Sum_probs=88.5
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCC--CCCcc-ceeeEEeeCCEEEEEEeCCCc-c-----c--chHh
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDM--IPTVG-FNMRKVTKGNVTIKLWDLGGQ-P-----R--FRSM 80 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~D~~g~-~-----~--~~~~ 80 (184)
++++..+..+|+++|.+|||||||+|++.+....... .++.. ................+.++. . . ....
T Consensus 9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (188)
T d1puia_ 9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA 88 (188)
T ss_dssp GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence 5667778899999999999999999999875543221 11111 111112233333333333321 1 1 1111
Q ss_pred H---HHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCC-CcCCCce
Q 029978 81 W---ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK-SITDREV 156 (184)
Q Consensus 81 ~---~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~ 156 (184)
. .........++.+.+........ .......+.. ...++++++||+|+..........+.+... .......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (188)
T d1puia_ 89 LGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 163 (188)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred hhhhhhhhhheeEEEEeecccccchhH-HHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCC
Confidence 1 11223344555556655433222 2233333322 367899999999997654333322222211 1122345
Q ss_pred eEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 157 CCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
+++++||++|.|+++|++.|.+.+
T Consensus 164 ~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 164 QVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHh
Confidence 799999999999999999987754
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=2.6e-16 Score=118.72 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=90.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCC------CCCC-CccceeeEEeeCCEEEEEEeCCCcccchH-----hHHHh
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSE------DMIP-TVGFNMRKVTKGNVTIKLWDLGGQPRFRS-----MWERY 84 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~------~~~~-t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~ 84 (184)
+..++|+|+|.+|+|||||+|.+++..... ...+ |.....+. ......+.+|||||...... .....
T Consensus 54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~-~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~ 132 (400)
T d1tq4a_ 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMK 132 (400)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee-ccCCCeEEEEeCCCcccccccHHHHHHHhh
Confidence 457999999999999999999999743321 1112 22211111 12233478999999543221 22233
Q ss_pred ccCCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCc---------CCHhHHHHHcC------C
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEA---------LSKEDLMEQMG------L 148 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~---------~~~~~~~~~~~------~ 148 (184)
...+|.++++.|..- .... .....+.. .++|+++|.||+|.... ...++..+.+. +
T Consensus 133 ~~~~d~~l~~~~~~~----~~~d~~l~~~l~~----~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l 204 (400)
T d1tq4a_ 133 FYEYDFFIIISATRF----KKNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 204 (400)
T ss_dssp GGGCSEEEEEESSCC----CHHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred hhcceEEEEecCCCC----CHHHHHHHHHHHH----cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHH
Confidence 566788877776432 2222 22233332 46899999999996321 11222222111 0
Q ss_pred CCcCCCceeEEEeeeCC--CCCHHHHHHHHHHHhhh
Q 029978 149 KSITDREVCCYMISCKN--STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 149 ~~~~~~~~~~~~~Sa~~--~~~v~~l~~~i~~~~~~ 182 (184)
........+++.+|+.+ ..++..|.+.+.+.+.+
T Consensus 205 ~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 205 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence 11112334688888765 56899999999887754
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=5.7e-16 Score=113.80 Aligned_cols=121 Identities=23% Similarity=0.254 Sum_probs=83.2
Q ss_pred HHHhhccC-Cce-EEEEEcCCCCChHHHHHHHHc--CC----------------CCCCCCCCccceeeEE----------
Q 029978 10 WLRSLFFK-QEM-ELSLIGLQNAGKTSLVNVIAT--GG----------------YSEDMIPTVGFNMRKV---------- 59 (184)
Q Consensus 10 ~~~~~~~~-~~~-~i~iiG~~g~GKStli~~l~~--~~----------------~~~~~~~t~~~~~~~~---------- 59 (184)
++++++.+ ..+ +|+|+|+.++|||||+.+++. +. .+.+..-|+......+
T Consensus 6 ~~~~lm~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~ 85 (341)
T d1n0ua2 6 QMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVK 85 (341)
T ss_dssp HHHHHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHH
T ss_pred HHHHHhcCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCccccc
Confidence 34444443 346 599999999999999999971 10 0111222333333222
Q ss_pred ------eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCc
Q 029978 60 ------TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133 (184)
Q Consensus 60 ------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 133 (184)
++..+.++++||||+.+|.......++.+|++++|+|+.+.-..+... .+..... .++|+++|+||+|.
T Consensus 86 ~~~~~~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~-~~~~a~~----~~~p~i~viNKiDr 160 (341)
T d1n0ua2 86 EIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQALG----ERIKPVVVINKVDR 160 (341)
T ss_dssp HCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCEEEEEEECHHH
T ss_pred chhccccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHH-HHHHHHH----cCCCeEEEEECccc
Confidence 124578999999999999999999999999999999998765444432 2333332 46899999999997
Q ss_pred cC
Q 029978 134 PE 135 (184)
Q Consensus 134 ~~ 135 (184)
..
T Consensus 161 ~~ 162 (341)
T d1n0ua2 161 AL 162 (341)
T ss_dssp HH
T ss_pred cc
Confidence 54
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=1.8e-15 Score=110.88 Aligned_cols=106 Identities=13% Similarity=0.125 Sum_probs=65.1
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH--
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED-- 141 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-- 141 (184)
+.+.+++|.|.-.-. ......+|.+++|.+....+..+.......++ +-++|+||+|.........
T Consensus 147 ~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---------aDi~VvNKaD~~~~~~~~~~~ 214 (327)
T d2p67a1 147 YDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEV---------ADLIVINKDDGDNHTNVAIAR 214 (327)
T ss_dssp CSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHH---------CSEEEECCCCTTCHHHHHHHH
T ss_pred CCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhcc---------ccEEEEEeecccchHHHHHHH
Confidence 456777777643321 24556789999998887666555544444443 4489999999876433222
Q ss_pred --HHHHcCC--CCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 142 --LMEQMGL--KSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 142 --~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
....+.. .......++++.|||++|.|+++|++.|.++..
T Consensus 215 ~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~ 258 (327)
T d2p67a1 215 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 258 (327)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence 2222211 222334568999999999999999999987653
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.58 E-value=6e-14 Score=99.74 Aligned_cols=129 Identities=13% Similarity=0.069 Sum_probs=79.3
Q ss_pred HHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccc-----
Q 029978 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF----- 77 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~----- 77 (184)
++++.++.. ....++|+++|.+|+|||||+|.+++.... .....|...........+..+.++||||..+.
T Consensus 20 e~~~~l~~~-~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~ 98 (257)
T d1h65a_ 20 ELLGNLKQE-DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND 98 (257)
T ss_dssp HHHHHHHHT-TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECH
T ss_pred HHHHHHhhc-CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHH
Confidence 444444432 246799999999999999999999975532 22334444455556677889999999994321
Q ss_pred --hHhHHHh--ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccC
Q 029978 78 --RSMWERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 78 --~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~ 135 (184)
....... ....+++++|++++...--......+..+..... ..-.++|+|.||+|...
T Consensus 99 ~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 99 MALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 161 (257)
T ss_dssp HHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred HHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence 1122222 2456888999888653211222222222221111 12357999999999865
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.56 E-value=1.6e-14 Score=105.64 Aligned_cols=153 Identities=10% Similarity=0.145 Sum_probs=92.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC----C------------------CCCCCCC----C-ccceeeE-----------
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG----G------------------YSEDMIP----T-VGFNMRK----------- 58 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~----~------------------~~~~~~~----t-~~~~~~~----------- 58 (184)
.+.+.|+|.|+||+|||||++++... . ....... . -...+..
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~ 128 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 128 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence 46799999999999999999999821 0 0000000 0 0001111
Q ss_pred ----------EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 029978 59 ----------VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128 (184)
Q Consensus 59 ----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 128 (184)
.+..++.+.+++|.|.-.-. ......+|..++|......+..+....-..+ ++-++|+
T Consensus 129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE---------~aDi~vv 196 (323)
T d2qm8a1 129 AAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFE---------LADMIAV 196 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHH---------HCSEEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhHhh---------hhheeeE
Confidence 01134678888998864433 2344569999999999876654433222222 3559999
Q ss_pred eCCCccCcCCHh-H----HHHHcCCC--CcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 129 NKIDKPEALSKE-D----LMEQMGLK--SITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 129 nK~D~~~~~~~~-~----~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
||+|+.+..... . ....+... ......++++.|||++|.|++++++.|.++..
T Consensus 197 NKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~ 256 (323)
T d2qm8a1 197 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 256 (323)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred eccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 999987653321 1 12222222 22234568999999999999999999987653
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.54 E-value=2.9e-16 Score=110.82 Aligned_cols=113 Identities=18% Similarity=0.073 Sum_probs=67.4
Q ss_pred EEEEEEeCCCcccchHhHH---Hh--ccCCCEEEEEEeCCCCCChHHHHHHHH---HHhcCCCCCCCcEEEEeeCCCccC
Q 029978 64 VTIKLWDLGGQPRFRSMWE---RY--CRAVSAIVYVVDAADYDNLPVSRSELH---DLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~---~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
..+.+.|+||+..+..... .. ....+.+++++|+.....-+....... ....+ ...|.++|+||+|+..
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~~ 171 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLS 171 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCC
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeecccccc
Confidence 3588899999876533211 11 234568899999875443232221111 11111 3579999999999987
Q ss_pred cCCHhHHHHH----------cCCC---------------CcCCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 136 ALSKEDLMEQ----------MGLK---------------SITDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 136 ~~~~~~~~~~----------~~~~---------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
....+..... +... ......++++++||++|.|+++|++.|.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5332221110 0000 001234579999999999999999998774
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=2.9e-09 Score=76.73 Aligned_cols=113 Identities=15% Similarity=0.183 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC-CCCCCCCccce-eeEEe-------------------------------------
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY-SEDMIPTVGFN-MRKVT------------------------------------- 60 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~-~~~~~~t~~~~-~~~~~------------------------------------- 60 (184)
-+|+++|.-++|||||+|.+++..+ +....+++... ...+.
T Consensus 27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (299)
T d2akab1 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 106 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCC
Confidence 4789999999999999999998775 55555544211 11100
Q ss_pred --------------e-CCEEEEEEeCCCccc-------------chHhHHHhccCCCEEE-EEEeCCCCCChHHHHHHHH
Q 029978 61 --------------K-GNVTIKLWDLGGQPR-------------FRSMWERYCRAVSAIV-YVVDAADYDNLPVSRSELH 111 (184)
Q Consensus 61 --------------~-~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~~~~~ 111 (184)
. ....+.++|+||... ...+...++...+.++ ++.++.....-.....+..
T Consensus 107 ~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~ 186 (299)
T d2akab1 107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAK 186 (299)
T ss_dssp TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHH
T ss_pred CcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHH
Confidence 0 011378999999321 1244556666777655 4555544333233223333
Q ss_pred HHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 112 DLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 112 ~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
.+ .....++++|+||+|..+.
T Consensus 187 ~~----~~~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 187 EV----DPQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HH----CTTCSSEEEEEECGGGSCT
T ss_pred Hh----CcCCCceeeEEeccccccc
Confidence 32 2245789999999999765
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.04 E-value=9.5e-10 Score=79.29 Aligned_cols=83 Identities=23% Similarity=0.350 Sum_probs=59.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeC-----------------CEEEEEEeCCCccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~ 76 (184)
...++|+|+|.|+||||||++.+++... ..-+..|+......+..+ ...+.+.|.||...
T Consensus 8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~ 87 (296)
T d1ni3a1 8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 87 (296)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence 4679999999999999999999996543 223444555433333222 24789999998322
Q ss_pred -------chHhHHHhccCCCEEEEEEeCCC
Q 029978 77 -------FRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 77 -------~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
........++.+|+++.|+|+.+
T Consensus 88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccccccHHHHHHHhhccceeEEEEeccC
Confidence 23456677899999999999965
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.02 E-value=1.6e-09 Score=78.36 Aligned_cols=68 Identities=21% Similarity=0.200 Sum_probs=41.8
Q ss_pred EEEEEeCCCccc-------------chHhHHHhccCCCEEEEEE-eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 029978 65 TIKLWDLGGQPR-------------FRSMWERYCRAVSAIVYVV-DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 130 (184)
Q Consensus 65 ~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 130 (184)
.+.++||||... .......++..++.+++++ +......-.........+ .....++++|.||
T Consensus 132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~----~~~~~r~i~Vitk 207 (306)
T d1jwyb_ 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----DPEGKRTIGVITK 207 (306)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----CSSCSSEEEEEEC
T ss_pred CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh----CcCCCeEEEEEec
Confidence 478999999422 2345667788888866665 443322222233333333 2235689999999
Q ss_pred CCccCc
Q 029978 131 IDKPEA 136 (184)
Q Consensus 131 ~D~~~~ 136 (184)
+|....
T Consensus 208 ~D~~~~ 213 (306)
T d1jwyb_ 208 LDLMDK 213 (306)
T ss_dssp TTSSCS
T ss_pred cccccc
Confidence 998754
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.99 E-value=8.3e-10 Score=78.89 Aligned_cols=81 Identities=23% Similarity=0.315 Sum_probs=54.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCC--CCCCccceeeEEeeC-----------------CEEEEEEeCCCccc---
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSED--MIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPR--- 76 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~--~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~--- 76 (184)
.++|+|||-|+||||||+++++....... +..|+......+... ...+.+.|.||--.
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 47999999999999999999997654322 334444333333221 23688999999432
Q ss_pred ----chHhHHHhccCCCEEEEEEeCCC
Q 029978 77 ----FRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 77 ----~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
.....-+.++.+|+++.|+|+..
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cCCCccHHHHHHHHhccceEEEeeccC
Confidence 22345567889999999998753
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.99 E-value=3.9e-10 Score=82.14 Aligned_cols=80 Identities=21% Similarity=0.267 Sum_probs=44.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCC--CCCcc----ceeeEEe--------------------eCCEEEEEEeCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDM--IPTVG----FNMRKVT--------------------KGNVTIKLWDLGG 73 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~--~~t~~----~~~~~~~--------------------~~~~~~~~~D~~g 73 (184)
++|+++|.|+||||||+|++++....... ..|+. ......+ .....++++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 48999999999999999999976543222 22322 1111111 1125699999999
Q ss_pred cccc-------hHhHHHhccCCCEEEEEEeCCC
Q 029978 74 QPRF-------RSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 74 ~~~~-------~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
--.. .......++.+|+++.|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 4321 1112234578999999999864
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.73 E-value=1.7e-08 Score=71.74 Aligned_cols=57 Identities=25% Similarity=0.289 Sum_probs=35.9
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
....++|+++|.||||||||+|++.+... ...++.|........+ -.+.++||||..
T Consensus 109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~---~~~~l~DTPGi~ 168 (273)
T d1puja_ 109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG---KELELLDTPGIL 168 (273)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET---TTEEEEECCCCC
T ss_pred CCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECC---CCeEEecCCCcc
Confidence 45679999999999999999999997543 2333444433333221 248899999953
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.47 E-value=8.6e-08 Score=65.62 Aligned_cols=87 Identities=16% Similarity=0.126 Sum_probs=57.2
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+...|.+++|+++.+++.-......+.-+... .++|.++|+||+|+.+....+.+.+..... ....+++.+|++
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~---~~~~~v~~vSa~ 81 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDLRKVRELEEIY---SGLYPIVKTSAK 81 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHH---TTTSCEEECCTT
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHHHHHHHHHhhccc---ccceeEEEeccc
Confidence 45679999999998765433333333333332 478999999999997653333333222211 112358999999
Q ss_pred CCCCHHHHHHHHH
Q 029978 165 NSTNIDTVIDWLV 177 (184)
Q Consensus 165 ~~~~v~~l~~~i~ 177 (184)
++.|+++|.+.+.
T Consensus 82 ~~~g~~~L~~~l~ 94 (225)
T d1u0la2 82 TGMGIEELKEYLK 94 (225)
T ss_dssp TCTTHHHHHHHHS
T ss_pred cchhHhhHHHHhc
Confidence 9999999988763
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.46 E-value=1.3e-07 Score=64.70 Aligned_cols=56 Identities=25% Similarity=0.225 Sum_probs=34.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCC----------CCCCCCccceeeEEeeCCEEEEEEeCCCcccc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYS----------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~----------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (184)
+-..+++|++|||||||+|++...... .....|.......+..+ -.++||||...+
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~ 160 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL 160 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence 446799999999999999999753221 11122333334444333 467799997543
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.46 E-value=2.7e-07 Score=65.37 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=65.8
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeE
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCC 158 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
......+..+|++++|+|+.++-+... ..+..+.+ ++|+|+|+||+|+.+....+++.+.+.. ....+
T Consensus 7 r~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~~-----~Kp~IlVlNK~DLv~~~~~~~w~~~f~~-----~~~~~ 74 (273)
T d1puja_ 7 REVTEKLKLIDIVYELVDARIPMSSRN--PMIEDILK-----NKPRIMLLNKADKADAAVTQQWKEHFEN-----QGIRS 74 (273)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHCS-----SSCEEEEEECGGGSCHHHHHHHHHHHHT-----TTCCE
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHHc-----CCCeEEEEECccCCchHHHHHHHHHHHh-----cCCcc
Confidence 455667899999999999988765443 23344432 5799999999999876544555544432 22358
Q ss_pred EEeeeCCCCCHHHHHHHHHHHhh
Q 029978 159 YMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 159 ~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+.+|++++.+...+.+.+.+.+.
T Consensus 75 i~isa~~~~~~~~~~~~~~~~l~ 97 (273)
T d1puja_ 75 LSINSVNGQGLNQIVPASKEILQ 97 (273)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHH
T ss_pred ceeecccCCCccccchhhhhhhh
Confidence 89999999999988887776654
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=7.7e-07 Score=61.06 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 029978 22 LSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~ 42 (184)
..|.|..|||||||+++++..
T Consensus 6 ~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 6 TLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEeeCCCCCHHHHHHHHHhc
Confidence 478899999999999999853
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.32 E-value=6.5e-08 Score=65.89 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=22.4
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...++.-|+++|++||||||.+-++.
T Consensus 6 ~~~~~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 6 VPPEPPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 344567788999999999999988776
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.29 E-value=7.9e-08 Score=65.27 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=36.3
Q ss_pred CEEEEEEeCCCcccch----HhHHHh--ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 63 NVTIKLWDLGGQPRFR----SMWERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
++.+.++||+|..... .....+ ....+-+++|.|+.....-......+..... +-=++.||.|...
T Consensus 92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~-------~~~~I~TKlDe~~ 163 (207)
T d1ls1a2 92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------VTGLVLTKLDGDA 163 (207)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC-------CCEEEEECGGGCS
T ss_pred cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC-------CCeeEEeecCccc
Confidence 4578999999954332 122222 2356788999998764322222222222211 1237789999644
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.29 E-value=2.1e-07 Score=63.08 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=19.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++.-++++|++||||||.+-++.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA 27 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLG 27 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 44567899999999999988876
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.27 E-value=3.4e-07 Score=62.10 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+.+.-|+++|++||||||.+-++.
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA 30 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLA 30 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345667899999999999998887
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.27 E-value=2.5e-07 Score=62.87 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=16.7
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHH
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.+.+.-|+++|++||||||.+-++.
T Consensus 9 ~k~p~vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 9 DKIPYVIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp SSSSEEEEEECSCCC----HHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3445668899999999999988876
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.22 E-value=1.2e-07 Score=65.17 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~ 42 (184)
-..+++|++|||||||+|+|...
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred ceEEEECCCCccHHHHHHhhccH
Confidence 45689999999999999999854
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.16 E-value=5.1e-07 Score=59.44 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
+||+|+|++|+|||||++.+.+
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 5899999999999999999984
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.05 E-value=2.1e-07 Score=63.87 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=55.4
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
....|.+++|+++.+++.-......+.-+... .+++.++|+||+|+.+..+.++....+.. .......+++.+|++
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~-~y~~~g~~v~~~Sa~ 83 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAE-DYRNIGYDVYLTSSK 83 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHH-HHHHHTCCEEECCHH
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHHHHHHHHHHH-HHhhccccceeeecC
Confidence 45789999999998765333333444444333 57899999999999765332222211110 011113358999999
Q ss_pred CCCCHHHHHHHH
Q 029978 165 NSTNIDTVIDWL 176 (184)
Q Consensus 165 ~~~~v~~l~~~i 176 (184)
++.|+++|.+.+
T Consensus 84 ~~~gl~~L~~~l 95 (231)
T d1t9ha2 84 DQDSLADIIPHF 95 (231)
T ss_dssp HHTTCTTTGGGG
T ss_pred ChhHHHHHHHhh
Confidence 999998887655
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.97 E-value=2.3e-06 Score=55.90 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=23.2
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+++++|+|.|++||||||+.+.|..
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 36789999999999999999999973
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.92 E-value=2.1e-06 Score=56.50 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.-+|+|+|++|+|||||++.|..
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.92 E-value=7.3e-06 Score=54.43 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=28.0
Q ss_pred HHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.+..-..+......+-|+|.|++|||||||++.|.
T Consensus 9 ~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~ 43 (198)
T d1rz3a_ 9 FLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLS 43 (198)
T ss_dssp HHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred HHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 34444455666677889999999999999999987
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.89 E-value=3.9e-06 Score=55.84 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+++++|+++|+|||||||+...|.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999987
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=3.6e-06 Score=54.62 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
-++|+|++|||||||++++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~ 23 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLI 23 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 37899999999999999998
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.83 E-value=3.9e-06 Score=54.60 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
.+|+++|+|||||||+.+.+.
T Consensus 5 ~~I~i~G~pGsGKTTia~~La 25 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELA 25 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999996
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=97.83 E-value=8.5e-05 Score=47.59 Aligned_cols=67 Identities=24% Similarity=0.202 Sum_probs=43.2
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEeeCCEEEEEEeCC
Q 029978 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
+++.+.+.+...+++.-|++.|+-|+|||||++.+...-- ....+||-... ..+..+...+..+|.=
T Consensus 19 ~~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~-~~Y~~~~~~i~H~DlY 87 (158)
T d1htwa_ 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLV-EEYNIAGKMIYHFDLY 87 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCE-EEEEETTEEEEEEECT
T ss_pred HHHHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEEE-EeeccCCceEEEEEEe
Confidence 3444445455557788899999999999999999985322 23345554322 2234566677777753
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=4.6e-06 Score=57.69 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=24.8
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..+++-+++|+|++|+|||||++.+.+
T Consensus 23 sl~i~~Ge~vaIvG~sGsGKSTLl~ll~g 51 (241)
T d2pmka1 23 NLSIKQGEVIGIVGRSGSGKSTLTKLIQR 51 (241)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34556778899999999999999999984
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.77 E-value=8.5e-06 Score=55.87 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=24.6
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...++=.++++|++|||||||++.+.+
T Consensus 20 sl~i~~Gei~~liGpsGsGKSTLl~~i~G 48 (232)
T d2awna2 20 NLDIHEGEFVVFVGPSGCGKSTLLRMIAG 48 (232)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence 35566777889999999999999999884
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.75 E-value=7.8e-06 Score=53.76 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
++|+|+|+|||||||+...+.
T Consensus 1 m~I~i~G~pGSGKsT~a~~La 21 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIV 21 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999886
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.75 E-value=6.8e-06 Score=54.60 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++++|+|.|++||||||++..|.
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La 24 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIK 24 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999887
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.74 E-value=9.8e-06 Score=56.06 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=24.8
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..+++-.++|+|++|+|||||++.+.+
T Consensus 22 sl~i~~Ge~vaivG~sGsGKSTLl~ll~g 50 (242)
T d1mv5a_ 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLER 50 (242)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34556778899999999999999999874
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.73 E-value=1.1e-05 Score=53.71 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+.++|+|+|+|||||||+...|..
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999983
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.72 E-value=9.3e-06 Score=55.61 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=24.2
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...++=.++|+|++|||||||++.+.+
T Consensus 25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~g 53 (230)
T d1l2ta_ 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (230)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCCcchhhHhccC
Confidence 35556777899999999999999998874
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.72 E-value=8.7e-06 Score=51.85 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=18.0
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
|++.|+|||||||+++.+..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999863
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.72 E-value=1.2e-05 Score=55.41 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++++|++|||||||++.+.+-
T Consensus 26 sl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl 55 (239)
T d1v43a3 26 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGL 55 (239)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 345566777899999999999999999853
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.71 E-value=1.2e-05 Score=53.57 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++..|+|+|+|||||||++.+|.
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La 27 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 455678999999999999999997
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=7.5e-06 Score=56.94 Aligned_cols=28 Identities=14% Similarity=0.386 Sum_probs=24.3
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++=.++|+|++|||||||++.+.+
T Consensus 35 l~i~~Ge~vaivG~sGsGKSTLl~li~g 62 (251)
T d1jj7a_ 35 FTLRPGEVTALVGPNGSGKSTVAALLQN 62 (251)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4556777899999999999999999874
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.71 E-value=9.9e-06 Score=53.43 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
++|+|+|+|||||||++..|.
T Consensus 1 M~I~i~G~pGSGKsT~a~~La 21 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIV 21 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999987
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.69 E-value=7.8e-06 Score=54.96 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=23.5
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-.++++|++|+|||||++.+.+
T Consensus 22 ~~i~~Gei~~l~G~NGsGKSTLl~~i~g 49 (200)
T d1sgwa_ 22 MTIEKGNVVNFHGPNGIGKTTLLKTIST 49 (200)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence 4445666789999999999999999974
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.68 E-value=1.1e-05 Score=56.19 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=24.5
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++.++++=.++|+|++|||||||++.+.+
T Consensus 35 sl~i~~Ge~iaivG~sGsGKSTLl~ll~g 63 (253)
T d3b60a1 35 NLKIPAGKTVALVGRSGSGKSTIASLITR 63 (253)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence 34556777899999999999999999874
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.68 E-value=1.2e-05 Score=52.91 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
++|+|+|+|||||||+...|.
T Consensus 1 m~I~i~G~pGsGKsT~a~~La 21 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLA 21 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999987
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.68 E-value=1e-05 Score=57.19 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=24.5
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...++=.++|+|++|+|||||++.+.+
T Consensus 56 sl~i~~Ge~vaivG~nGsGKSTLl~~i~G 84 (281)
T d1r0wa_ 56 NLNIEKGEMLAITGSTGSGKTSLLMLILG 84 (281)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 34556677899999999999999999984
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.67 E-value=1.3e-05 Score=55.28 Aligned_cols=30 Identities=33% Similarity=0.336 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++..+++=.++++|++|||||||++.+.+-
T Consensus 23 sl~i~~Ge~~~liG~sGaGKSTll~~i~gl 52 (240)
T d1g2912 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGL 52 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred eeEEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence 345566777899999999999999999853
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=1.4e-05 Score=55.06 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=24.5
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...++-.++|+|++|||||||++.+.+
T Consensus 25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~G 53 (240)
T d3dhwc1 25 SLHVPAGQIYGVIGASGAGKSTLIRCVNL 53 (240)
T ss_dssp EEEECSSCEEEEEESTTSSHHHHHHHHTT
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 34556777789999999999999999874
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.65 E-value=1.8e-05 Score=51.61 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.+++-|.++|.+||||||+.+.|.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 467889999999999999998887
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.64 E-value=0.00019 Score=49.55 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+...|.+.||||+|||++++.+.+
T Consensus 38 ~p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 38 TPLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHhh
Confidence 3456799999999999999999973
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.63 E-value=1.4e-05 Score=51.83 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=17.6
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 029978 22 LSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~ 40 (184)
++|+|.+|||||||++++.
T Consensus 4 i~I~G~~gSGKTTli~~l~ 22 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWV 22 (165)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 4799999999999999997
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.63 E-value=1.4e-05 Score=51.83 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
-|++.|++||||||+++.|..
T Consensus 4 lI~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999973
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=1.5e-05 Score=52.37 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
++|+++|+|||||||..+.|.
T Consensus 1 m~I~i~G~pGSGKsT~~~~La 21 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIM 21 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999886
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.62 E-value=1.1e-05 Score=55.17 Aligned_cols=30 Identities=30% Similarity=0.328 Sum_probs=25.1
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
|+...++=-++++|++|||||||++.+.+-
T Consensus 20 s~~i~~Ge~~~liGpsGaGKSTll~~l~Gl 49 (229)
T d3d31a2 20 SLKVESGEYFVILGPTGAGKTLFLELIAGF 49 (229)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 355566777899999999999999999853
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=9.2e-06 Score=55.84 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=25.0
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++.++++=.++++|++|+|||||++.+.+
T Consensus 19 sl~I~~Gei~~iiG~nGaGKSTLl~~l~G 47 (231)
T d1l7vc_ 19 SGEVRAGEILHLVGPNGAGKSTLLARMAG 47 (231)
T ss_dssp EEEEETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 45566777899999999999999999985
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=1.8e-05 Score=50.75 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
.|+++|++||||||+.+.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La 23 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLA 23 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=97.59 E-value=1.9e-05 Score=54.40 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=24.7
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++=.++++|++|+|||||++.+.+-
T Consensus 22 s~~v~~Gei~glvG~nGaGKSTLl~~l~G~ 51 (238)
T d1vpla_ 22 SFEIEEGEIFGLIGPNGAGKTTTLRIISTL 51 (238)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345566777899999999999999999843
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.59 E-value=1.9e-05 Score=51.90 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++|+++|+|||||||+.+.+.
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La 23 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQ 23 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=1.9e-05 Score=51.64 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
.|.|+|++|+|||||+..+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~ 22 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 48899999999999999987
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.58 E-value=1.8e-05 Score=54.61 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=23.9
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++=-++++|++|+|||||++.+.+
T Consensus 27 ~~i~~Gei~~liGpnGaGKSTl~~~i~G 54 (240)
T d1ji0a_ 27 LKVPRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4556667789999999999999999984
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=97.52 E-value=2.7e-05 Score=54.28 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=24.6
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...++=.++|+|++|||||||++.+.+
T Consensus 22 s~~i~~GEi~~iiG~sGsGKSTLl~~i~G 50 (258)
T d1b0ua_ 22 SLQARAGDVISIIGSSGSGKSTFLRCINF 50 (258)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred eeEEcCCCEEEEECCCCCcHHHHHHHHHc
Confidence 34556777899999999999999999974
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.00013 Score=51.32 Aligned_cols=66 Identities=27% Similarity=0.285 Sum_probs=42.1
Q ss_pred HHHHHHhhccCCce-EEEEEcCCCCChHHHHHHHHcCCCCCC-----CCCCccceeeE---EeeCCEEEEEEeCCCc
Q 029978 7 FLNWLRSLFFKQEM-ELSLIGLQNAGKTSLVNVIATGGYSED-----MIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 7 ~~~~~~~~~~~~~~-~i~iiG~~g~GKStli~~l~~~~~~~~-----~~~t~~~~~~~---~~~~~~~~~~~D~~g~ 74 (184)
-++.++.. +.++ -|+|+|+.++|||+|+|.+.+..+.-. ...|.|.-... .+..+..+.++||.|.
T Consensus 21 ~l~~l~~~--~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~ 95 (277)
T d1f5na2 21 ALKILSAI--TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL 95 (277)
T ss_dssp HHHHHHTC--CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred HHHHHHcC--CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccc
Confidence 34555554 3444 567999999999999999997553211 22344432211 2345578899999984
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=2.9e-05 Score=51.51 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
++.|+|+|+|||||||.+..+.
T Consensus 1 p~iI~i~GppGSGKsT~a~~La 22 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIV 22 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3678999999999999999987
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.52 E-value=1e-05 Score=56.32 Aligned_cols=28 Identities=25% Similarity=0.597 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-+++|+|++|||||||++.+.+
T Consensus 39 l~i~~Ge~vaivG~sGsGKSTLl~ll~g 66 (255)
T d2hyda1 39 LSIEKGETVAFVGMSGGGKSTLINLIPR 66 (255)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHh
Confidence 4556778899999999999999998873
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.51 E-value=3.3e-05 Score=53.06 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.++++|++|||||||++.+.+
T Consensus 26 ~~~liGpnGaGKSTll~~i~G 46 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 568999999999999999985
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.49 E-value=3.3e-05 Score=50.52 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.5
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHH
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++..-|+++|.|||||||++.++.
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456778999999999999999986
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.48 E-value=1.5e-05 Score=54.88 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=24.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++=.++++|++|||||||++.+.+-
T Consensus 26 l~i~~Ge~~~iiG~sGsGKSTll~~i~gl 54 (242)
T d1oxxk2 26 INIENGERFGILGPSGAGKTTFMRIIAGL 54 (242)
T ss_dssp EEECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 45566778999999999999999999853
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.46 E-value=3.3e-05 Score=53.75 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=23.4
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++=-++++|++|+|||||++.+.+
T Consensus 25 ~~v~~Gei~~liG~nGaGKSTLl~~i~G 52 (254)
T d1g6ha_ 25 ISVNKGDVTLIIGPNGSGKSTLINVITG 52 (254)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHHC
Confidence 4445666789999999999999999984
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=4.1e-05 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+++-|+|.|++||||||+.+.|.
T Consensus 1 ~P~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 1 EPFLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999886
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.45 E-value=3.5e-05 Score=50.44 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
-|+|.|++||||||+++.+.
T Consensus 3 iI~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999886
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.43 E-value=4.5e-05 Score=51.05 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
.-|+++|.|||||||+.++|.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~ 23 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLT 23 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999997
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.42 E-value=3.5e-05 Score=49.74 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
+|+++|++||||||+...+.
T Consensus 2 ~I~liG~~GsGKsTi~k~La 21 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALA 21 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999886
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.42 E-value=3e-05 Score=50.22 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
+|+++|++||||||+.+.+.
T Consensus 3 ~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 58899999999999998886
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.41 E-value=4.1e-05 Score=50.63 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
|+|+||+|||||||++++..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~ 23 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=97.40 E-value=6.9e-05 Score=49.55 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
++++-|+|.|.+||||||+++.|....
T Consensus 1 k~p~IIgitG~~gSGKstva~~l~~~g 27 (191)
T d1uf9a_ 1 KHPIIIGITGNIGSGKSTVAALLRSWG 27 (191)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCC
Confidence 357889999999999999999887543
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=2.2e-05 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++..|.++|.+||||||+.+.|.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La 40 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALE 40 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999999999996
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=4.5e-05 Score=50.19 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
-|+++||+|||||||++.+..
T Consensus 4 iivl~GpsG~GK~tl~~~L~~ 24 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRE 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999974
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.37 E-value=4.9e-05 Score=49.26 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
--|++.|++||||||+.+.+..
T Consensus 5 ~iI~l~G~~GsGKSTia~~La~ 26 (176)
T d1zp6a1 5 NILLLSGHPGSGKSTIAEALAN 26 (176)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999974
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.37 E-value=6.4e-05 Score=49.94 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=20.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++.--|+|+|+|||||||++..+..
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344578999999999999999983
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.37 E-value=9.3e-05 Score=50.42 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=25.2
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+++..|+.+. +.-.+.+.||+|+||||+++.+..
T Consensus 34 ~~l~~~i~~~---~~~~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 34 KRLKHYVKTG---SMPHLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp HHHHHHHHHT---CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCCeEEEECCCCCcHHHHHHHHHH
Confidence 4555665443 223589999999999999999873
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=5e-05 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
--+++.|++||||||+.+.+..
T Consensus 7 ~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 7 HIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999873
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.36 E-value=0.00013 Score=50.50 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=27.1
Q ss_pred HHHHHHHHhhc---cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLF---FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+.+++.+.. ....-.+.|.|++|+|||++++.+..
T Consensus 26 ~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 26 QQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp HHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHH
Confidence 45566665532 23346789999999999999999874
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=6.4e-05 Score=50.54 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.-++|+||+|||||||++.+..
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~ 24 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLK 24 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 45678999999999999999984
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=97.34 E-value=0.00011 Score=50.32 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=26.1
Q ss_pred HHHHHHHHhhccC--CceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLFFK--QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~--~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+..|+...... ..-.+.+.||||+||||+++.+.+
T Consensus 19 ~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 19 QKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp HHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4455555443322 235688999999999999999973
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.33 E-value=5.8e-05 Score=48.88 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
-|.|.|++||||||+.+.|..
T Consensus 5 iI~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367889999999999999984
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=6.3e-05 Score=49.40 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
|+|+||+|+||+||+++|..
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.31 E-value=6.4e-05 Score=49.87 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
|+|+||+|||||||++.+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999863
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.00012 Score=52.10 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=22.3
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
...+.++-|+|.|++||||||+.+.+.
T Consensus 75 ~~~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 75 NGQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp C-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 334557999999999999999988876
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=97.28 E-value=8.7e-05 Score=50.76 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=25.7
Q ss_pred HHHHHHHHhhcc--CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLFF--KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~--~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+++..|+..... ...-.+.+.||||+||||+++.+..
T Consensus 19 ~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 19 KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp HHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHh
Confidence 455555543221 2234688999999999999999873
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.26 E-value=8e-05 Score=48.35 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=17.5
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 029978 22 LSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~ 40 (184)
|+++|++||||||+.+.+.
T Consensus 5 Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp EEEESCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999999986
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.24 E-value=0.00018 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
-.+++.||||+||||+++.+.+
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~ 74 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQ 74 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999984
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.24 E-value=9.6e-05 Score=49.92 Aligned_cols=23 Identities=22% Similarity=0.575 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+.+.|+|-||+||||||....+.
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La 24 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIA 24 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45788999999999999999998
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.24 E-value=8.2e-05 Score=49.35 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+..-|.++|+|||||||+...+.
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La 29 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIV 29 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44558899999999999999997
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.24 E-value=0.00011 Score=51.12 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+.-|.+.|+||+|||||+..+.+
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~ 54 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFE 54 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999974
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.21 E-value=0.0002 Score=48.54 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.+.+..|+..... -.+.+.||+|+||||+++.+.
T Consensus 24 ~~~L~~~~~~~~~---~~~ll~Gp~G~GKTt~a~~la 57 (224)
T d1sxjb2 24 IDRLQQIAKDGNM---PHMIISGMPGIGKTTSVHCLA 57 (224)
T ss_dssp HHHHHHHHHSCCC---CCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---CeEEEECCCCCCchhhHHHHH
Confidence 3456666644322 348899999999999999886
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.19 E-value=0.00013 Score=52.44 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+.+|+|.|+.|||||||++.++.
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~ 188 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIME 188 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGG
T ss_pred HhCCCEEEEeeccccchHHHHHHhh
Confidence 4456799999999999999999984
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.17 E-value=0.0003 Score=49.37 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+++..++.........-|+|.|.+|+|||||+..+.+
T Consensus 29 ~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 29 VDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35566666554445556788999999999999998864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.14 E-value=0.00012 Score=47.89 Aligned_cols=20 Identities=15% Similarity=0.504 Sum_probs=17.3
Q ss_pred EE-EEEcCCCCChHHHHHHHH
Q 029978 21 EL-SLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i-~iiG~~g~GKStli~~l~ 40 (184)
|| +|.|.+||||||+++.+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 44 577999999999999886
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.12 E-value=9.1e-05 Score=49.11 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.4
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..++++-|+|-|..||||||+++.|..
T Consensus 5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 5 EGTQPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 346678899999999999999999873
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.11 E-value=0.00018 Score=48.99 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=24.2
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+..|+.+-. .-.+.+.||+|+||||+++.+..
T Consensus 22 ~~l~~~i~~~~---~~~lll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 22 TVLKKTLKSAN---LPHMLFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp HHHHHHTTCTT---CCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CCeEEEECCCCCChHHHHHHHHH
Confidence 44555553322 23478999999999999999873
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.0004 Score=45.99 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+-++.++|+||+|||+++..+..
T Consensus 41 ~~k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 41 RTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCeEEEecCCcccHHHHHHHHH
Confidence 4566899999999999999988873
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.10 E-value=0.00023 Score=47.84 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.2
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...+++.-|.+.|.|||||||+.+.|.
T Consensus 18 ~~~~~kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 18 ELRNQRGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp HHHTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHhCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3455778889999999999999999986
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.10 E-value=0.00031 Score=47.51 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=24.7
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+..|+.+-.. -.+.+.|++|+||||+++.+..
T Consensus 24 ~~L~~~i~~~~~---~~lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 24 TTVRKFVDEGKL---PHLLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp HHHHHHHHTTCC---CCEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCC---CeEEEECCCCCChhHHHHHHHH
Confidence 455555544322 2478999999999999999974
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.01 E-value=0.00055 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=20.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+.++-|+|-|++|||||||...+.
T Consensus 25 ~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 25 KCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEeECCCCCCHHHHHHHHH
Confidence 346899999999999999988764
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.0006 Score=47.49 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..-+++++|++|+|||++++.+..
T Consensus 37 ~~k~n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 37 RRKNNPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccCCcEEECCCCCcHHHHHHHHHH
Confidence 4557899999999999999998873
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.92 E-value=0.00035 Score=47.90 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=25.0
Q ss_pred HHHHHHHhhccCC--ceEEEEEcCCCCChHHHHHHHHc
Q 029978 6 AFLNWLRSLFFKQ--EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~~--~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+...+.++.... .-.+.+.|++|+||||+++.+..
T Consensus 18 ~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 18 ELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp HHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred HHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3444444443322 23588999999999999999874
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.00052 Score=47.57 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.-.+.+.||||+|||++++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHH
Confidence 34589999999999999999983
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.00029 Score=47.35 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
-|+|.|||||||||+...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La 24 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMA 24 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46888999999999999997
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.86 E-value=0.00036 Score=51.62 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=32.9
Q ss_pred CchHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+|+...-...++.+.....=-|.+.|+.||||||.+..++.
T Consensus 140 LG~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~ 180 (401)
T d1p9ra_ 140 LGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQ 180 (401)
T ss_dssp SCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHhhhhceEEEEcCCCCCccHHHHHHhh
Confidence 35556666666677767777789999999999999999985
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.84 E-value=0.00051 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+-|+|+|..||||||+++.|...
T Consensus 3 ~iIgITG~igSGKStv~~~l~~~ 25 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTDL 25 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
Confidence 56899999999999999988643
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.80 E-value=0.00033 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
-.++|.|++|+|||||++++..
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHH
Confidence 4578999999999999999873
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.73 E-value=0.00041 Score=49.47 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.-.+.++||||+|||.|++.+..
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhh
Confidence 35678999999999999999984
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.73 E-value=0.00048 Score=45.84 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
-|+|-|..||||||+++.|.
T Consensus 2 lI~ieG~dGsGKST~~~~L~ 21 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLS 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999886
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.00064 Score=45.48 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY 44 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~ 44 (184)
+-|+|+|..||||||..+.|...++
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~G~ 28 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADLGI 28 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred EEEEEECCCcCCHHHHHHHHHHCCC
Confidence 5689999999999999998874433
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.69 E-value=0.00088 Score=46.39 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..-.+.+.||||+|||++++.+..
T Consensus 37 ~~~giLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 37 PPRGILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceeEEecCCCCCchHHHHHHHH
Confidence 345689999999999999999983
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.68 E-value=0.00086 Score=46.15 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.-.+.+.||||+|||++++.+.+
T Consensus 42 ~~giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHH
Confidence 34689999999999999999984
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.64 E-value=0.0011 Score=48.62 Aligned_cols=24 Identities=33% Similarity=0.471 Sum_probs=19.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+.+-++++||+||||||+++..+.
T Consensus 41 ~~k~n~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 41 RTKNNPVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHH
T ss_pred CCCCCCeEECCCCCCHHHHHHHHH
Confidence 445667999999999999986555
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.60 E-value=0.00084 Score=50.18 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
-+|.++||+|||||-|++++.
T Consensus 50 sNILliGPTGvGKTlLAr~LA 70 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLA 70 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred ccEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.55 E-value=0.0057 Score=41.04 Aligned_cols=73 Identities=12% Similarity=0.022 Sum_probs=43.3
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCccCcCCHhH
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPEALSKED 141 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~~~~ 141 (184)
.+.+.++|+++.... .....+..+|.++++...+. .++.........+. . .+.|++ +|.|+.|.......++
T Consensus 111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~-~---~~~~~~giv~N~~~~~~~~~~~~ 183 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVLK-K---AGLAILGFVLNRYGRSDRDIPPE 183 (237)
T ss_dssp GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHHH-H---TTCEEEEEEEEEETSCTTCCCHH
T ss_pred cCCEEEEcccccccc--cchhhhhhhhcccccccccc-eecchhhHHHHHHh-h---hhhhhhhhhhcccccccchhhhH
Confidence 357889999875432 23344667999999888652 23333333333232 2 456765 7899998765543333
Q ss_pred H
Q 029978 142 L 142 (184)
Q Consensus 142 ~ 142 (184)
.
T Consensus 184 ~ 184 (237)
T d1g3qa_ 184 A 184 (237)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.00098 Score=44.48 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
.-|+|-|..||||||+++.+.
T Consensus 3 kfIviEG~dGsGKsT~~~~L~ 23 (210)
T d4tmka_ 3 KYIVIEGLEGAGKTTARNVVV 23 (210)
T ss_dssp CEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 347899999999999999887
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.47 E-value=0.001 Score=44.60 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=19.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++.-|+|-|..||||||++..+.
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~ 24 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLV 24 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHH
Confidence 45568899999999999888775
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.39 E-value=0.0015 Score=45.30 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.....|.+.|++|+|||+|++.+.+
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~ 63 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIAN 63 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcchhHHHHHHH
Confidence 3445689999999999999999983
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.39 E-value=0.0026 Score=43.89 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.0
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
+.+.|+||+|||++++.+..
T Consensus 49 l~l~GppGtGKT~l~~~l~~ 68 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVK 68 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHH
Confidence 34569999999999999983
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.30 E-value=0.00079 Score=47.49 Aligned_cols=18 Identities=22% Similarity=0.695 Sum_probs=16.6
Q ss_pred EEEcCCCCChHHHHHHHH
Q 029978 23 SLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 23 ~iiG~~g~GKStli~~l~ 40 (184)
+++|++|+||||+++++.
T Consensus 28 vlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 28 AIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EEECCTTTCSTHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 799999999999998884
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=96.29 E-value=0.0021 Score=42.54 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++.+..|++.. ++.--+++.||+++|||+|+..+.
T Consensus 40 l~~l~~~l~~~--PKkn~i~~~GP~~TGKS~f~~sl~ 74 (205)
T d1tuea_ 40 LGALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFI 74 (205)
T ss_dssp HHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHH
T ss_pred HHHHHHHHcCC--CCceEEEEECCCCccHHHHHHHHH
Confidence 44555555443 444567899999999999998887
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.00017 Score=47.59 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=16.6
Q ss_pred EEEcCCCCChHHHHHHHH
Q 029978 23 SLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 23 ~iiG~~g~GKStli~~l~ 40 (184)
+|+|++|+||||++..+.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 688999999999999986
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0027 Score=42.31 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
-+.+.|++|+||||++..+..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999998774
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.25 E-value=0.0028 Score=46.04 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+.--+++.||||+|||+++..+.
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~ 175 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALL 175 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHH
T ss_pred CcCeEEEECCCCCCHHHHHHHHH
Confidence 34467999999999999999987
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.0014 Score=43.43 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++--+.|.|+||+|||+|+..+..
T Consensus 21 ~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 21 ETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3455678999999999999998874
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=96.19 E-value=0.0018 Score=42.02 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
.+.-|+|.|++|+||||++-.+....
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 34568999999999999999988543
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0025 Score=43.40 Aligned_cols=20 Identities=30% Similarity=0.503 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
.+.+.|++|+||||+++.+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~ 55 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLA 55 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 36889999999999999876
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.11 E-value=0.00094 Score=46.89 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=16.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
..-|+|.|++||||||+.++|.
T Consensus 4 ~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 4 HPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp SCEEEEESCC---CCTHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 3458999999999999999875
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=96.10 E-value=0.0022 Score=41.66 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.+.-|.|.|++|+||||++-.+...
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3456899999999999999998853
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.001 Score=45.08 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..|+|-|+.||||||+++.|..
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGG
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998873
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.98 E-value=0.0009 Score=48.00 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
-.+.+.|+||+|||+|++++.
T Consensus 29 h~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHH
Confidence 469999999999999999986
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.0021 Score=43.65 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
-|+|-|..||||||+++.+..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999999973
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.91 E-value=0.0022 Score=43.60 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+--+.|.|+||+|||+|..++..
T Consensus 35 ~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 35 TQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 344578999999999999988873
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.90 E-value=0.0019 Score=47.37 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=18.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++++ +|+|++|+||||++.++.
T Consensus 25 ~~l~-~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 25 SNFT-SIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp CSEE-EEECSTTSSHHHHHHHHH
T ss_pred CCEE-EEECCCCCCHHHHHHHHH
Confidence 4454 689999999999999974
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.88 E-value=0.002 Score=43.51 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++--+.|.|+||+|||+|+..+..
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 445678999999999999998873
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=95.85 E-value=0.003 Score=40.65 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
.+.-|+|.|++|+||||+.-.+....
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~~g 39 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIKRG 39 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 35678999999999999998887543
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.82 E-value=0.0037 Score=37.73 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=23.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHH
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++++.|.+.|.+|+||||+.+.+.
T Consensus 3 ~kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 3 PKQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred CccceEEEEeCCCCCCHHHHHHHHH
Confidence 4688999999999999999999986
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.76 E-value=0.0034 Score=42.01 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++.-|+|-|..||||||+++.|.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~ 24 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILY 24 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEEECCCCCcHHHHHHHHH
Confidence 45568999999999999999886
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.74 E-value=0.003 Score=42.80 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++--+.|.|+||+|||+|+.++..
T Consensus 24 ~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 24 FKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3556678999999999999988873
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=95.64 E-value=0.0031 Score=45.13 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..++|.|=|..|+||||+++.+..
T Consensus 4 ~~lrI~IEG~iGsGKSTl~~~L~~ 27 (331)
T d1osna_ 4 GVLRIYLDGAYGIGKTTAAEEFLH 27 (331)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=95.58 E-value=0.0042 Score=42.10 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|+|.|..||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999863
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.54 E-value=0.0038 Score=42.11 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+--+.|.|++|+|||+|+..+.-
T Consensus 32 ~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 32 ESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3445678999999999999999973
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=95.51 E-value=0.0047 Score=44.25 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.-++|.|=|..|+||||+++.+..
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~ 28 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMAS 28 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred ceEEEEEECCccCCHHHHHHHHHH
Confidence 347899999999999999999974
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=95.45 E-value=0.004 Score=44.50 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.-++|.|-|+.|+||||+++.+.
T Consensus 3 ~~lrI~IEG~iGsGKTTl~~~La 25 (329)
T d1e2ka_ 3 TLLRVYIDGPHGMGKTTTTQLLV 25 (329)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHT
T ss_pred CceEEEEECCcCCCHHHHHHHHH
Confidence 34689999999999999999986
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.0059 Score=43.38 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
-.++++||+|+|||.|+..+.
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la 73 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLS 73 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHH
Confidence 367899999999999999987
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.0079 Score=40.68 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++--+.|.|+||+|||+|..++..
T Consensus 35 p~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 35 ESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4455678999999999999998874
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.17 E-value=0.006 Score=40.79 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=19.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+++--+.|.|++|+|||+|+..+.
T Consensus 24 ~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHH
Confidence 455667899999999999987765
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.11 E-value=0.007 Score=43.04 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=17.2
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
+++.|+||+|||.|++.+.+
T Consensus 126 ~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 44579999999999999984
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=94.93 E-value=0.0065 Score=44.06 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..-++.++||+|||||-|++++..
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHHh
Confidence 456689999999999999999873
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.92 E-value=0.0078 Score=40.19 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
+.|.|++|+|||-|++.+.+
T Consensus 39 l~l~G~~G~GKTHLl~A~~~ 58 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGN 58 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999873
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.78 E-value=0.0087 Score=41.32 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=18.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++--++|.|+||+|||||+..+.
T Consensus 34 ~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 34 GGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 34446899999999999987776
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=94.60 E-value=0.029 Score=38.73 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++.--+.+.|+++.|||+|++.+..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHH
Confidence 4456678999999999999999873
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.014 Score=40.75 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=24.3
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++-++=+++|+|++|+|||+|+..+..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4557788999999999999999988874
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.011 Score=40.67 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
-..|.|++|+|||||+-.+.
T Consensus 31 ~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 35799999999999988775
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.0096 Score=43.84 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
-+++|+|.+|+|||+++..++
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 458999999999999987776
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=94.43 E-value=0.0076 Score=42.05 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=13.9
Q ss_pred EEEEcCCCCChHHH-HHH
Q 029978 22 LSLIGLQNAGKTSL-VNV 38 (184)
Q Consensus 22 i~iiG~~g~GKStl-i~~ 38 (184)
+.|+|++|+||||. +.+
T Consensus 17 ~lI~g~aGTGKTt~l~~r 34 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITNK 34 (306)
T ss_dssp EEECCCTTSCHHHHHHHH
T ss_pred EEEEeeCCccHHHHHHHH
Confidence 67899999999976 444
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.16 E-value=0.011 Score=41.54 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.5
Q ss_pred EEEEEcCCCCChHHHH
Q 029978 21 ELSLIGLQNAGKTSLV 36 (184)
Q Consensus 21 ~i~iiG~~g~GKStli 36 (184)
.+.|.|++|+||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3788999999999764
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.018 Score=41.54 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.8
Q ss_pred EEEEEcCCCCChHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVI 39 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l 39 (184)
-++|.|+||+||||++..+
T Consensus 165 ~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 165 ISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp EEEEECCTTSTHHHHHHHH
T ss_pred eEEEEcCCCCCceehHHHH
Confidence 4688999999999987554
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.64 E-value=0.022 Score=38.49 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=17.6
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 029978 22 LSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~ 40 (184)
++|.|++.+||||+++++.
T Consensus 44 ~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 44 LIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEeccCchhhHHHHHHHH
Confidence 5799999999999999987
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=93.60 E-value=0.026 Score=39.93 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
.+.++||+|+|||.+++.+.
T Consensus 55 ~~lf~Gp~G~GKt~lak~la 74 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLA 74 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHH
Confidence 56788999999999999887
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.31 E-value=0.027 Score=37.82 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=17.6
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 029978 22 LSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~ 40 (184)
++|.|++.+||||+++++.
T Consensus 38 ~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEESCSSSSHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhH
Confidence 6899999999999999886
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.27 E-value=0.022 Score=39.37 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=18.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.+--+.+.|++++|||||+-.+.
T Consensus 59 ~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 59 RGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SSSEEEEECSSSSSHHHHHHHHH
T ss_pred cceeEEEecCCCcHHHHHHHHHH
Confidence 34556899999999999987665
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.23 E-value=0.15 Score=35.04 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
+--+-+.|++++|||+|+..+.
T Consensus 57 g~itei~G~~~sGKT~l~l~~~ 78 (268)
T d1xp8a1 57 GRITEIYGPESGGKTTLALAIV 78 (268)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEecCCccchHHHHHHHH
Confidence 3456799999999999998876
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=92.78 E-value=0.069 Score=36.24 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=25.2
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+++....... .....-|.|.|++|+||+.+++.+..
T Consensus 10 ~~~~~~~~~~-a~~~~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 10 KEILEKIKKI-SCAECPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp HHHHHHHHHH-TTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCCCEEEECCCCcCHHHHHHHHHH
Confidence 3444444333 23345689999999999999998863
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.64 E-value=0.043 Score=37.97 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.7
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.-++=|++|+|++|+|||+|+..+..
T Consensus 64 pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 64 PYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred cccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 345667899999999999999888863
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.29 E-value=0.044 Score=37.67 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=18.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
+--+.+.|++|+|||||+-.+.
T Consensus 54 g~itei~G~~gsGKTtl~l~~~ 75 (263)
T d1u94a1 54 GRIVEIYGPESSGKTTLTLQVI 75 (263)
T ss_dssp TSEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEecCCCcHHHHHHHHHH
Confidence 3456899999999999987776
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=91.99 E-value=0.055 Score=36.93 Aligned_cols=73 Identities=11% Similarity=0.059 Sum_probs=37.3
Q ss_pred CEEEEEEeCCCcccc-hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCccCc
Q 029978 63 NVTIKLWDLGGQPRF-RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDKPEA 136 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D~~~~ 136 (184)
.+.+.++|+|+.... ..........+|.++++.+.. ..++.........+.......+.++ -+|.|+.+....
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~ 189 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE 189 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc
Confidence 356889999864322 222223335578777777653 3344433333222222111233333 367899887654
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=91.63 E-value=0.089 Score=35.96 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=18.0
Q ss_pred cCCceEEE-EEcCCCCChHHHHHHHH
Q 029978 16 FKQEMELS-LIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 16 ~~~~~~i~-iiG~~g~GKStli~~l~ 40 (184)
.++..+|. +.|-.|+||||+.-.|.
T Consensus 16 ~~~~~~iii~sGKGGVGKTT~a~nLA 41 (279)
T d1ihua2 16 ARNEHGLIMLMGKGGVGKTTMAAAIA 41 (279)
T ss_dssp HTTSCEEEEEECSTTSSHHHHHHHHH
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHH
Confidence 35556664 55999999999865554
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=90.94 E-value=0.057 Score=34.82 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 029978 22 LSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~ 42 (184)
+.|+|...||||.+..++...
T Consensus 2 iLVtGGarSGKS~~AE~l~~~ 22 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCccHHHHHHHHHhc
Confidence 589999999999999999743
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=90.06 E-value=0.14 Score=35.11 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=17.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
.--|.+.|-.|+||||+.-.+.
T Consensus 8 p~~i~~sGKGGVGKTTvaa~lA 29 (296)
T d1ihua1 8 PPYLFFTGKGGVGKTSISCATA 29 (296)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCcChHHHHHHHHH
Confidence 3455789999999999766554
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=89.33 E-value=0.14 Score=33.36 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=17.3
Q ss_pred eEEEEEcCC-CCChHHHHHHHH
Q 029978 20 MELSLIGLQ-NAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~-g~GKStli~~l~ 40 (184)
.++.|.|-. ||||||+.--|.
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La 23 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALL 23 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHH
Confidence 467899996 999999976665
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=88.95 E-value=0.15 Score=35.13 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=16.4
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
+|+|-|-.|+||||+.-.+.
T Consensus 4 ~IaisgKGGVGKTT~a~NLA 23 (289)
T d2afhe1 4 QCAIYGKGGIGKSTTTQNLV 23 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 56788999999999866654
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=88.88 E-value=0.15 Score=30.75 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=18.0
Q ss_pred CCceEE-EEEcCCCCChHHHHHHHH
Q 029978 17 KQEMEL-SLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i-~iiG~~g~GKStli~~l~ 40 (184)
.++.++ .+.++.|+|||+++-.+.
T Consensus 5 ~~~~~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 5 PQSFQVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp CSSCEEEEEECCTTSCTTTHHHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHH
Confidence 345555 578999999999886655
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.73 E-value=0.27 Score=31.98 Aligned_cols=25 Identities=4% Similarity=0.023 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.....+.+.|++|+|||+++..+..
T Consensus 13 ~~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 13 SEGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988773
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.67 E-value=0.11 Score=35.97 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=22.3
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++.-++=|++|+|++|+|||+|+..+.
T Consensus 63 ~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 63 VPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cCccCCCEEEeecCCCCChHHHHHHHH
Confidence 344567789999999999999987776
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=88.58 E-value=0.075 Score=31.88 Aligned_cols=21 Identities=33% Similarity=0.216 Sum_probs=16.9
Q ss_pred cCCceEEEEEcCCCCChHHHH
Q 029978 16 FKQEMELSLIGLQNAGKTSLV 36 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli 36 (184)
.+++-.+.+.+++|+|||..+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 466778889999999999543
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=86.68 E-value=0.14 Score=35.34 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=21.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.-++=|++|+|++|+|||+|+..+..
T Consensus 64 ig~GQr~~Ifg~~g~GKt~l~~~~~~ 89 (276)
T d1fx0a3 64 VGRGQRELIIGDRQTGKTAVATDTIL 89 (276)
T ss_dssp CBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred ccCCceEeeccCCCCChHHHHHHHHh
Confidence 34566789999999999999876553
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=86.40 E-value=0.23 Score=30.39 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.0
Q ss_pred EEEcCCCCChHH-HHHHHH
Q 029978 23 SLIGLQNAGKTS-LVNVIA 40 (184)
Q Consensus 23 ~iiG~~g~GKSt-li~~l~ 40 (184)
+++||=.||||| |++++.
T Consensus 6 ~i~GpMfsGKTteLi~~~~ 24 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRLH 24 (139)
T ss_dssp EEECSTTSCHHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHHH
Confidence 688999999999 666654
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.48 E-value=0.17 Score=35.36 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=13.2
Q ss_pred EEEEcCCCCChHHHH
Q 029978 22 LSLIGLQNAGKTSLV 36 (184)
Q Consensus 22 i~iiG~~g~GKStli 36 (184)
-++.|.+|+|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (313)
T d2olra1 17 AVFFGLSGTGKTTLS 31 (313)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEEccCCCCcccce
Confidence 369999999999975
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=85.04 E-value=0.19 Score=35.22 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=13.2
Q ss_pred EEEEcCCCCChHHHH
Q 029978 22 LSLIGLQNAGKTSLV 36 (184)
Q Consensus 22 i~iiG~~g~GKStli 36 (184)
-++.|.+|+|||||-
T Consensus 17 alffGLSGTGKTTLs 31 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLS 31 (318)
T ss_dssp EEEEECTTSCHHHHT
T ss_pred EEEEccCCCCccccc
Confidence 478999999999975
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.74 E-value=0.24 Score=34.83 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=13.5
Q ss_pred EEEEcCCCCChHHHH
Q 029978 22 LSLIGLQNAGKTSLV 36 (184)
Q Consensus 22 i~iiG~~g~GKStli 36 (184)
-++.|.+|+|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 17 TVFFGLSGTGKTTLS 31 (323)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEccCCCCcccce
Confidence 469999999999997
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=83.28 E-value=0.64 Score=30.99 Aligned_cols=29 Identities=21% Similarity=0.139 Sum_probs=21.5
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
..+..+......+.|+.|||||-..-+..
T Consensus 69 ~~~~~~~~~~~LL~GdvGsGKT~V~~~a~ 97 (233)
T d2eyqa3 69 SDMCQPLAMDRLVCGDVGFGKTEVAMRAA 97 (233)
T ss_dssp HHHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred HHHhccCccCeEEEcCCCCCcHHHHHHHH
Confidence 33455566788999999999998855443
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.44 E-value=0.46 Score=31.06 Aligned_cols=64 Identities=17% Similarity=0.065 Sum_probs=34.4
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCcc
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKP 134 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~ 134 (184)
+.+.++|+|+.... .....+..+|.++++..... .+......... ..+. .+.+ +-+|.|+.+..
T Consensus 110 ~D~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~~~-~~~~~~~~~~~-~~~~---~~~~~~~iv~N~~~~~ 174 (232)
T d1hyqa_ 110 TDILLLDAPAGLER--SAVIAIAAAQELLLVVNPEI-SSITDGLKTKI-VAER---LGTKVLGVVVNRITTL 174 (232)
T ss_dssp CSEEEEECCSSSSH--HHHHHHHHSSEEEEEECSSH-HHHHHHHHHHH-HHHH---HTCEEEEEEEEEECTT
T ss_pred cceeeecccccccc--hhHHHhhhhheeeeeccccc-cchhhhhhhhh-hhhh---cccccccccccccccc
Confidence 45788898875432 22334556898888887643 22222222222 2222 1234 34678998754
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.25 E-value=0.4 Score=32.67 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=20.9
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHH
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVI 39 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l 39 (184)
..+..+....-.+.|+.|||||-..-..
T Consensus 97 ~d~~~~~~m~rLL~GdvGSGKT~Va~~a 124 (264)
T d1gm5a3 97 NDMISEKPMNRLLQGDVGSGKTVVAQLA 124 (264)
T ss_dssp HHHHSSSCCCCEEECCSSSSHHHHHHHH
T ss_pred HHhhccCcceeeeeccccccccHHHHHH
Confidence 3445566677899999999999875443
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=81.41 E-value=1.2 Score=27.33 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=18.4
Q ss_pred CCceEEEEEcC-CCCChHHHHHHHHcCC
Q 029978 17 KQEMELSLIGL-QNAGKTSLVNVIATGG 43 (184)
Q Consensus 17 ~~~~~i~iiG~-~g~GKStli~~l~~~~ 43 (184)
++++||+|+|. .++|- +++..+..+.
T Consensus 2 ~~p~KV~IiGA~G~VG~-~~a~~l~~~~ 28 (154)
T d1y7ta1 2 KAPVRVAVTGAAGQIGY-SLLFRIAAGE 28 (154)
T ss_dssp CCCEEEEESSTTSHHHH-HHHHHHHTTT
T ss_pred CCCCEEEEECCCCHHHH-HHHHHHHhcc
Confidence 46789999996 78885 5555565443
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=80.31 E-value=0.55 Score=29.95 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=12.8
Q ss_pred EEEEEcCCCCChHHH
Q 029978 21 ELSLIGLQNAGKTSL 35 (184)
Q Consensus 21 ~i~iiG~~g~GKStl 35 (184)
++.++++.|+|||..
T Consensus 25 n~lv~~pTGsGKT~i 39 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLI 39 (200)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred CeEEEeCCCCcHHHH
Confidence 467889999999974
|