Citrus Sinensis ID: 030025
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 184 | 2.2.26 [Sep-21-2011] | |||||||
| A9X7L0 | 364 | Anthranilate N-methyltran | N/A | no | 1.0 | 0.505 | 0.625 | 4e-67 | |
| Q8W013 | 363 | Caffeic acid 3-O-methyltr | N/A | no | 1.0 | 0.506 | 0.586 | 1e-62 | |
| Q9XGW0 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 1.0 | 0.509 | 0.581 | 2e-61 | |
| Q9FQY8 | 359 | Caffeic acid 3-O-methyltr | N/A | no | 1.0 | 0.512 | 0.565 | 5e-61 | |
| Q9FK25 | 363 | Flavone 3'-O-methyltransf | yes | no | 1.0 | 0.506 | 0.570 | 5e-61 | |
| Q9XGV9 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 1.0 | 0.509 | 0.570 | 1e-60 | |
| Q8GU25 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 1.0 | 0.504 | 0.570 | 2e-60 | |
| Q43609 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 1.0 | 0.504 | 0.570 | 6e-60 | |
| O81646 | 359 | Caffeic acid 3-O-methyltr | N/A | no | 1.0 | 0.512 | 0.565 | 6e-60 | |
| P59049 | 343 | Quercetin 3-O-methyltrans | N/A | no | 1.0 | 0.536 | 0.554 | 1e-59 |
| >sp|A9X7L0|ANMT_RUTGR Anthranilate N-methyltransferase OS=Ruta graveolens PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 253 bits (647), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 115/184 (62%), Positives = 145/184 (78%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M+NH+T+ L++ILE YKGFE++ +LVDVGG LG TL I SKYPHI+ INFDLPHV+Q +
Sbjct: 181 MFNHSTIALKRILEHYKGFENVTKLVDVGGGLGVTLSMIASKYPHIQAINFDLPHVVQDA 240
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
YPGV+HVGG+MF+SVP GDAIL+KWILH W DE CL++LKNC+K+ PE GKVIV+ SV
Sbjct: 241 ASYPGVEHVGGNMFESVPEGDAILMKWILHCWDDEQCLRILKNCYKATPENGKVIVMNSV 300
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
+PE PE + ++ SL DVL+MT+ GG+ERT+ EFT LA AGF GI F C NL +M
Sbjct: 301 VPETPEVSSSARETSLLDVLLMTRDGGGRERTQKEFTELAIGAGFKGINFACCVCNLHIM 360
Query: 181 EFYK 184
EF+K
Sbjct: 361 EFFK 364
|
Involved in the biosynthesis of acridine alkaloids. N-methyltransferase with a strict substrate specificity for anthranilate. No activity with anthranilic acid methyl ester, anthraniloyl CoA, 3- or 4-amino-benzoic acid, salicylic acid, catechol, eugenol, caffeic acid, quercetin, theobromin, theophyllin, putrescine and nicotinic acid among others. Ruta graveolens (taxid: 37565) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1EC: 1 |
| >sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (608), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 108/184 (58%), Positives = 135/184 (73%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M NH+T++++KILE Y+GF+ +K +VDVGG G TL I SKYP IKGINFDLPHVI+ +
Sbjct: 180 MSNHSTIIMKKILEIYQGFQGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDA 239
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P YPGV HVGGDMF SVP GDAI +KWI HDWSD HCLK LKNCH+++PE GKVI+ E +
Sbjct: 240 PSYPGVDHVGGDMFVSVPKGDAIFMKWICHDWSDAHCLKFLKNCHEALPENGKVILAECL 299
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LPE P++ ++ DV+++ PGGKERT+ EF LA AGF G VC +N W+M
Sbjct: 300 LPEAPDSTLSTQNTVHVDVIMLAHNPGGKERTEKEFEALAKGAGFRGFIKVCCAYNSWIM 359
Query: 181 EFYK 184
E K
Sbjct: 360 ELLK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Catharanthus roseus (taxid: 4058) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 235 bits (599), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 107/184 (58%), Positives = 132/184 (71%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M NH+T+ ++KILE Y GF+ +K +VDVGG G TL I SKYP IKGINFDLPHVI+ +
Sbjct: 178 MSNHSTITMKKILETYTGFDGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDA 237
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P YPGV+HVGGDMF SVP GDAI +KWI HDWSDEHC+K LKNC+ ++P+ GKVI+ E V
Sbjct: 238 PSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYDALPQNGKVILAECV 297
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LPE P+ G +K DV+++ PGGKERT+ EF LA AGF C +N W+M
Sbjct: 298 LPEAPDTGLATKNVVHIDVIMLAHNPGGKERTEKEFQGLAKAAGFKQFNKACCAYNTWIM 357
Query: 181 EFYK 184
E K
Sbjct: 358 ELLK 361
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9FQY8|COMT1_CAPAN Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2 | Back alignment and function description |
|---|
Score = 233 bits (595), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 104/184 (56%), Positives = 132/184 (71%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M +H+T+ ++KILE YKGFE + +VDVGG G T+ I SKYP IKGINFDL HVI+ +
Sbjct: 176 MSDHSTMTMKKILEDYKGFEGLNSIVDVGGGTGATVNMIVSKYPSIKGINFDLSHVIEDA 235
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P YPGV+HVG DMF SVP DAI +KWI HDWSDEHCLK LKNC++++P GKV+V E +
Sbjct: 236 PAYPGVEHVGRDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPANGKVLVAECI 295
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LPE P+ +K D++++ PGGKERT+ EF LA AGF+G R C + WVM
Sbjct: 296 LPETPDTSAATKNAVHVDIVMLAHNPGGKERTEKEFEALAKGAGFTGFRRACCAYQTWVM 355
Query: 181 EFYK 184
EF+K
Sbjct: 356 EFHK 359
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Capsicum annuum (taxid: 4072) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9FK25|OMT1_ARATH Flavone 3'-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (595), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 105/184 (57%), Positives = 137/184 (74%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M NH+T+ ++KILE YKGFE + LVDVGG +G TLK I SKYP++KGINFDLPHVI+ +
Sbjct: 178 MSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDA 237
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P +PG++HVGGDMF SVP GDAI +KWI HDWSDEHC+K LKNC++S+PE GKVI+ E +
Sbjct: 238 PSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDGKVILAECI 297
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LPE P++ +K D +++ PGGKERT+ EF LA +GF GI+ VC + ++
Sbjct: 298 LPETPDSSLSTKQVVHVDCIMLAHNPGGKERTEKEFEALAKASGFKGIKVVCDAFGVNLI 357
Query: 181 EFYK 184
E K
Sbjct: 358 ELLK 361
|
Methylates OH residues of flavonoid compounds. Substrate preference is quercetin > myricetin >> luteolin. Dihydroquercetin is not a substrate. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 6 |
| >sp|Q9XGV9|COMT2_OCIBA Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (591), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 105/184 (57%), Positives = 132/184 (71%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M NH+T+ ++KILE Y GF+ +K +VDVGG G TL I SKYP IKGINFDLPHV++ +
Sbjct: 178 MSNHSTITMKKILETYTGFDGLKTVVDVGGGTGATLNMIISKYPSIKGINFDLPHVVEDA 237
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P YPGV+HVGGDMF SVP GDAI +KWI HDWSD HC+K LK C++++PE GKVI+ E V
Sbjct: 238 PSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDAHCVKFLKKCYEALPENGKVILAECV 297
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LPE P+ G +K DV+++ PGGKERT+ EF LA +GF VC +N W+M
Sbjct: 298 LPEAPDTGLATKNVVHIDVIMLAHNPGGKERTEKEFQVLAKASGFKQFNKVCCAYNSWIM 357
Query: 181 EFYK 184
E K
Sbjct: 358 ELLK 361
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q8GU25|COMT1_ROSCH Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (589), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 105/184 (57%), Positives = 133/184 (72%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M +H+T+ ++KILE YKGFE + +VDVGG G + I SKYP IKGINFDLPHVI+ +
Sbjct: 180 MADHSTITMKKILETYKGFEGLTSIVDVGGGTGAVVNMIVSKYPSIKGINFDLPHVIEDA 239
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P+YPGV+HVGGDMF SVP GDAI +KWI HDWSDEHCLK LKNC+ ++P+ GKVI+ E +
Sbjct: 240 PQYPGVQHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECI 299
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LP P+ +K DV+++ PGGKERT+ EF LA +GF GIR C N +V+
Sbjct: 300 LPVAPDTSLATKGVVHIDVVMLAHNPGGKERTEQEFEALAKGSGFQGIRVACNAFNTYVI 359
Query: 181 EFYK 184
EF K
Sbjct: 360 EFLK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Rosa chinensis (taxid: 74649) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (585), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 105/184 (57%), Positives = 132/184 (71%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M +H+T+ ++KILE YKGFE + +VDVGG G L I SKYP IKGINFDLPHVI+ +
Sbjct: 180 MADHSTITMKKILETYKGFEGLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIEDA 239
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P+YPGV+HVGGDMF SVP GDAI +KWI HDWSDEHCLK LKNC+ ++P+ GKVI+ E +
Sbjct: 240 PQYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECI 299
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LP P++ +K DV+++ PGGKERT+ EF LA AGF G C N +V+
Sbjct: 300 LPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEQEFQALAKGAGFQGFNVACSAFNTYVI 359
Query: 181 EFYK 184
EF K
Sbjct: 360 EFLK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Prunus dulcis (taxid: 3755) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|O81646|COMT1_CAPCH Caffeic acid 3-O-methyltransferase OS=Capsicum chinense GN=COMT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (585), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 104/184 (56%), Positives = 132/184 (71%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M +HTTL ++KILE Y GFE + +VDVGG G T+ I SKYP IKGINFDLPHVI+ +
Sbjct: 176 MSDHTTLSMKKILEDYTGFEGLNSIVDVGGGTGATVNMIVSKYPSIKGINFDLPHVIRDA 235
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P YPGV+ VGGDMF SVP DAI +KWI HDWSD+HC+KLLKNC++++P GKVI+VE +
Sbjct: 236 PSYPGVEQVGGDMFVSVPKADAIFMKWICHDWSDDHCIKLLKNCYEALPANGKVIIVECI 295
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LPE P+ +K D++++ PGGKERT+ +F LA FS R VC ++ WVM
Sbjct: 296 LPEAPDTSAATKSKVHGDIIMLAHNPGGKERTEKDFEALANWGWFSRFRKVCCAYHTWVM 355
Query: 181 EFYK 184
EF K
Sbjct: 356 EFNK 359
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Capsicum chinense (taxid: 80379) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|P59049|OMT1_CHRAE Quercetin 3-O-methyltransferase 1 OS=Chrysosplenium americanum GN=OMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (583), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 102/184 (55%), Positives = 134/184 (72%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M +H+T+ ++K+ +AY+GF+ + LVDVGG G TL I SKYP I+ INFDLPHVI+ +
Sbjct: 156 MSDHSTITMKKVFQAYQGFQGLTSLVDVGGGTGATLTMILSKYPTIRCINFDLPHVIEDA 215
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
PEYPG++HVGGDMF SVP GDAI +KWI HDWSDEHCLKLLKNC+ ++P GKVI+ E +
Sbjct: 216 PEYPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKLLKNCYDALPNNGKVILAECI 275
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LPE+P++ +K DV+ + PGGKERT+ EF LA AGF G + C N +++
Sbjct: 276 LPEVPDSSLATKGVVHIDVITVAHNPGGKERTEKEFEALAKAAGFQGFQVFCNAFNTYII 335
Query: 181 EFYK 184
EF K
Sbjct: 336 EFSK 339
|
Methylates OH residues of flavonoid and phenylpropanoid compounds and shows a higher affinity for flavonoid than phenylpropanoid substrates. Substrate preference is quercetin (flavonoid) = luteolin (flavonoid) > 5-hydroxyferulic acid (phenylpropanoid) > caffeic acid (phenylpropanoid) >> apigenin (flavonoid) = kempferol (flavonoid). 3,4-dimethylquercetin is not a substrate. Chrysosplenium americanum (taxid: 36749) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 184 | ||||||
| 284437809 | 377 | O-methyltransferase-like protein [Prunus | 1.0 | 0.488 | 0.682 | 1e-72 | |
| 145695037 | 353 | O-methyltransferase [Citrus sinensis x C | 1.0 | 0.521 | 0.711 | 2e-72 | |
| 356573271 | 372 | PREDICTED: caffeic acid 3-O-methyltransf | 1.0 | 0.494 | 0.670 | 9e-72 | |
| 388512375 | 377 | unknown [Lotus japonicus] | 1.0 | 0.488 | 0.679 | 1e-71 | |
| 357512657 | 362 | Caffeic acid 3-O-methyltransferase [Medi | 1.0 | 0.508 | 0.663 | 2e-71 | |
| 388494808 | 362 | unknown [Medicago truncatula] | 1.0 | 0.508 | 0.663 | 3e-71 | |
| 255647474 | 372 | unknown [Glycine max] | 1.0 | 0.494 | 0.664 | 8e-71 | |
| 255548061 | 359 | o-methyltransferase, putative [Ricinus c | 1.0 | 0.512 | 0.646 | 9e-71 | |
| 356520217 | 372 | PREDICTED: anthranilate N-methyltransfer | 1.0 | 0.494 | 0.657 | 1e-70 | |
| 357512651 | 375 | Caffeic acid 3-O-methyltransferase [Medi | 1.0 | 0.490 | 0.657 | 2e-70 |
| >gi|284437809|gb|ADB85561.1| O-methyltransferase-like protein [Prunus mume] | Back alignment and taxonomy information |
|---|
Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 127/186 (68%), Positives = 153/186 (82%), Gaps = 2/186 (1%)
Query: 1 MYNHTTLVLQKILEAYKGFE--HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQ 58
M+NHTT+V++K+L YKG E ++ QLVDVGG LG TL ITS+Y HIKGINFDLPHV+
Sbjct: 192 MFNHTTIVIKKLLHIYKGLEDKNLTQLVDVGGGLGVTLNLITSRYQHIKGINFDLPHVVN 251
Query: 59 HSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118
H+P YPGV+HVGGDMF SVP+GDAI +KWILHDWSDEHCLKLLKNC+K+IP+ GKVIVVE
Sbjct: 252 HAPSYPGVEHVGGDMFASVPSGDAIFMKWILHDWSDEHCLKLLKNCYKAIPDNGKVIVVE 311
Query: 119 SVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLW 178
++LP +PE T +K S DV++MTQ PGGKER++ EF LAT AGFSGIR+ CF N W
Sbjct: 312 ALLPAMPETSTATKTTSQLDVVMMTQNPGGKERSEQEFMALATGAGFSGIRYECFVCNFW 371
Query: 179 VMEFYK 184
VMEF+K
Sbjct: 372 VMEFFK 377
|
Source: Prunus mume Species: Prunus mume Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145695037|gb|ABP94018.1| O-methyltransferase [Citrus sinensis x Citrus reticulata] | Back alignment and taxonomy information |
|---|
Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 131/184 (71%), Positives = 153/184 (83%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
MYN+T+LV+ ILE+YKGF++IKQLVDVGGSLG TL+AIT+KYP+IKGINFD PHVI H+
Sbjct: 170 MYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGITLQAITTKYPYIKGINFDQPHVIDHA 229
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P +P ++HVGGDMFQSVP GDAI +K +LHDW+DEHCLKLLKNC+KSIPE GKVIVVES+
Sbjct: 230 PPHPRIEHVGGDMFQSVPKGDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESM 289
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LPE+P SK NS DVL+M Q PGGKERT+HEF TLAT AGF GI +LWVM
Sbjct: 290 LPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGSLWVM 349
Query: 181 EFYK 184
EFYK
Sbjct: 350 EFYK 353
|
Source: Citrus sinensis x Citrus reticulata Species: Citrus sinensis x Citrus reticulata Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356573271|ref|XP_003554786.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 274 bits (701), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 124/185 (67%), Positives = 151/185 (81%), Gaps = 1/185 (0%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M NHTT+V++K+LE YKGFE+IK LVDVGG LG + ITSKYPHI+GINFDLPHV++H+
Sbjct: 188 MINHTTIVMKKVLECYKGFENIKMLVDVGGGLGININLITSKYPHIQGINFDLPHVLEHA 247
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P YPGV+HVGGDMF++VP GDAI +KWILHDWSDE+CLKLLKNC+ +IP+ GKVIVVE+V
Sbjct: 248 PSYPGVEHVGGDMFENVPKGDAIFMKWILHDWSDEYCLKLLKNCYDAIPDDGKVIVVEAV 307
Query: 121 LPELPENGTHS-KINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWV 179
LP +PE + K S DVL+MTQ PGGKER+ EF LAT AGFSGIR+ C+ W+
Sbjct: 308 LPIIPETSNAAWKAVSQTDVLMMTQNPGGKERSDQEFMDLATAAGFSGIRYECYVRTFWI 367
Query: 180 MEFYK 184
MEF+K
Sbjct: 368 MEFFK 372
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388512375|gb|AFK44249.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 125/184 (67%), Positives = 151/184 (82%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M N TTL +++ILE Y GFEHI +LVDVGG LG LK +TSKYPH++G+NFDLPHVIQH+
Sbjct: 194 MVNSTTLTMKRILELYNGFEHITKLVDVGGGLGINLKLVTSKYPHVQGVNFDLPHVIQHA 253
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P Y GV+HVGGDMF+SVP GDAI +KWILHDWSDEHCLKLLKNC+K+IP+ GKVIVV+SV
Sbjct: 254 PVYAGVEHVGGDMFESVPTGDAIFMKWILHDWSDEHCLKLLKNCYKAIPDDGKVIVVDSV 313
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
+P +PE T +K +D+++MTQ PGGKERT+HEF LA +GF GIRFVC LWVM
Sbjct: 314 VPAVPETTTAAKNVFNSDLIMMTQNPGGKERTEHEFMELAKGSGFRGIRFVCSVSGLWVM 373
Query: 181 EFYK 184
EF+K
Sbjct: 374 EFFK 377
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357512657|ref|XP_003626617.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|87240860|gb|ABD32718.1| O-methyltransferase, family 2; Dimerisation [Medicago truncatula] gi|355501632|gb|AES82835.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 122/184 (66%), Positives = 149/184 (80%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M NHTT+V+ K+L++YKGFE +K+LVDVGG LG + ITSK+PHI GINFDLPHVIQH+
Sbjct: 179 MINHTTIVMNKVLQSYKGFEDVKRLVDVGGGLGVNINLITSKHPHIHGINFDLPHVIQHA 238
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P YPGV+HVGGDMF++VP DAI +KWILHDWSDE CLKLLKNC+ +IP+ GKVIV+E+V
Sbjct: 239 PSYPGVEHVGGDMFETVPKADAIFMKWILHDWSDEQCLKLLKNCYDAIPDDGKVIVLEAV 298
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
L +PEN K + +DVL+MTQ PGGKERT+ EF LA AGFSGIR+ C+ H WVM
Sbjct: 299 LSIIPENNAAWKFAAQSDVLMMTQSPGGKERTEQEFMDLANGAGFSGIRYECYVHTFWVM 358
Query: 181 EFYK 184
EF+K
Sbjct: 359 EFFK 362
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388494808|gb|AFK35470.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 273 bits (697), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 122/184 (66%), Positives = 149/184 (80%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M NHTT+V+ K+L++YKGFE +K+LVDVGG LG + ITSK+PHI GINFDLPHVIQH+
Sbjct: 179 MINHTTIVMNKVLQSYKGFEDVKRLVDVGGGLGVNVNLITSKHPHIHGINFDLPHVIQHA 238
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P YPGV+HVGGDMF++VP DAI +KWILHDWSDE CLKLLKNC+ +IP+ GKVIV+E+V
Sbjct: 239 PSYPGVEHVGGDMFETVPKADAIFMKWILHDWSDEQCLKLLKNCYDAIPDDGKVIVLEAV 298
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
L +PEN K + +DVL+MTQ PGGKERT+ EF LA AGFSGIR+ C+ H WVM
Sbjct: 299 LSIIPENNAAWKFAAQSDVLMMTQSPGGKERTEQEFMDLANGAGFSGIRYECYVHTFWVM 358
Query: 181 EFYK 184
EF+K
Sbjct: 359 EFFK 362
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255647474|gb|ACU24201.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 271 bits (693), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 123/185 (66%), Positives = 150/185 (81%), Gaps = 1/185 (0%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M NHTT+V++K+LE YKGFE+IK LVDVGG LG + ITSKYPHI+GINFDLPHV++H+
Sbjct: 188 MINHTTIVMKKVLECYKGFENIKMLVDVGGGLGININLITSKYPHIQGINFDLPHVLEHA 247
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P YPGV+HVGGDMF++VP GDAI +KWILHDWSDE+CLKLLKNC+ +IP+ GKVIVVE+V
Sbjct: 248 PSYPGVEHVGGDMFENVPKGDAIFMKWILHDWSDEYCLKLLKNCYDAIPDDGKVIVVEAV 307
Query: 121 LPELPENGTHS-KINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWV 179
LP +PE + K S DVL+MTQ GGKER+ EF LAT AGFSGIR+ C+ W+
Sbjct: 308 LPIIPETSNAAWKAVSQTDVLMMTQNSGGKERSDQEFMDLATAAGFSGIRYECYVRTFWI 367
Query: 180 MEFYK 184
MEF+K
Sbjct: 368 MEFFK 372
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548061|ref|XP_002515087.1| o-methyltransferase, putative [Ricinus communis] gi|223545567|gb|EEF47071.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 271 bits (693), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 119/184 (64%), Positives = 153/184 (83%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M++HT LV+ KILE YKGF+ +KQL+DVGG LG+TLKAI SKYPH+KGINFDLPHV++++
Sbjct: 176 MFHHTNLVITKILETYKGFKQLKQLIDVGGGLGHTLKAIISKYPHLKGINFDLPHVVKYA 235
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P PGV+HV GDMF+SVP G+AI +KWILHDWSDEHCL+LLKNC++++P+ GKVIV+++V
Sbjct: 236 PAIPGVEHVAGDMFESVPKGEAIFMKWILHDWSDEHCLRLLKNCYEALPDDGKVIVMDAV 295
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LP +PE G +K N D++VMT Y GG ERT+HEF +AT AGF GIR+VC N W+M
Sbjct: 296 LPVMPETGKAAKANFQTDLVVMTVYEGGTERTEHEFLAMATAAGFRGIRYVCCACNFWIM 355
Query: 181 EFYK 184
EF+K
Sbjct: 356 EFFK 359
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520217|ref|XP_003528760.1| PREDICTED: anthranilate N-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 121/184 (65%), Positives = 150/184 (81%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M+N TT+V++++LE Y+GF++I +LVDVGG LG L ITSKYPH++G+NFDLPHVI+H+
Sbjct: 189 MFNLTTIVMKRVLEFYEGFKNINRLVDVGGGLGINLNLITSKYPHVQGVNFDLPHVIEHA 248
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P YPG++HVGGDMF+SVPNGDAI +KWILHDWSDE CLKLLKNCHK+IP GKVIVV+ +
Sbjct: 249 PTYPGIEHVGGDMFESVPNGDAIFMKWILHDWSDEQCLKLLKNCHKAIPSDGKVIVVDLI 308
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LP LPE+ +K AD+L+MTQ GGKERT+HEF LA +GFSGI+ VC WVM
Sbjct: 309 LPILPESTVTAKSGFQADLLMMTQNSGGKERTQHEFMELALSSGFSGIKIVCSVSGFWVM 368
Query: 181 EFYK 184
EFYK
Sbjct: 369 EFYK 372
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357512651|ref|XP_003626614.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|87240858|gb|ABD32716.1| O-methyltransferase, family 2; Dimerisation [Medicago truncatula] gi|355501629|gb|AES82832.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 121/184 (65%), Positives = 152/184 (82%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M N TT+ +++I++ Y+GF+HI +LVDVGG LG LK ITSKY HI+GINFDLPHV+QH+
Sbjct: 192 MVNSTTINMKRIIDCYQGFDHITKLVDVGGGLGINLKLITSKYSHIQGINFDLPHVLQHA 251
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P YPGV+HVGGDMF+SVP GDAI +KWILHDWSDEHCLKLLKNC+K+IPE GKVIVV+++
Sbjct: 252 PVYPGVEHVGGDMFESVPAGDAIFMKWILHDWSDEHCLKLLKNCYKAIPEDGKVIVVDTI 311
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LP +PE ++K ++DVL+MTQ PGGKERT+HEF LA +GFS I+ +C LWVM
Sbjct: 312 LPVMPETTANAKTACMSDVLMMTQNPGGKERTEHEFKELAKGSGFSAIKPICCVSGLWVM 371
Query: 181 EFYK 184
EF+K
Sbjct: 372 EFFK 375
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 184 | ||||||
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 1.0 | 0.506 | 0.570 | 2.8e-57 | |
| TAIR|locus:2034016 | 363 | AT1G51990 [Arabidopsis thalian | 0.989 | 0.501 | 0.540 | 3.8e-53 | |
| UNIPROTKB|Q6ZD89 | 368 | ROMT-9 "Flavone 3'-O-methyltra | 1.0 | 0.5 | 0.524 | 1.7e-52 | |
| TAIR|locus:2199607 | 373 | IGMT1 "indole glucosinolate O- | 0.978 | 0.482 | 0.546 | 1.5e-51 | |
| UNIPROTKB|Q84N28 | 360 | OMT1 "Flavone O-methyltransfer | 1.0 | 0.511 | 0.532 | 2.4e-51 | |
| TAIR|locus:2199582 | 373 | IGMT4 "indole glucosinolate O- | 0.978 | 0.482 | 0.535 | 1.7e-50 | |
| TAIR|locus:2204680 | 381 | AT1G77520 [Arabidopsis thalian | 1.0 | 0.482 | 0.513 | 1.7e-50 | |
| TAIR|locus:2204695 | 381 | AT1G77530 [Arabidopsis thalian | 1.0 | 0.482 | 0.535 | 1.7e-50 | |
| TAIR|locus:2199597 | 373 | IGMT3 "indole glucosinolate O- | 0.978 | 0.482 | 0.535 | 2.8e-50 | |
| TAIR|locus:2199587 | 373 | IGMT2 "indole glucosinolate O- | 0.978 | 0.482 | 0.535 | 4.6e-50 |
| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 105/184 (57%), Positives = 137/184 (74%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M NH+T+ ++KILE YKGFE + LVDVGG +G TLK I SKYP++KGINFDLPHVI+ +
Sbjct: 178 MSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDA 237
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P +PG++HVGGDMF SVP GDAI +KWI HDWSDEHC+K LKNC++S+PE GKVI+ E +
Sbjct: 238 PSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDGKVILAECI 297
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LPE P++ +K D +++ PGGKERT+ EF LA +GF GI+ VC + ++
Sbjct: 298 LPETPDSSLSTKQVVHVDCIMLAHNPGGKERTEKEFEALAKASGFKGIKVVCDAFGVNLI 357
Query: 181 EFYK 184
E K
Sbjct: 358 ELLK 361
|
|
| TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 100/185 (54%), Positives = 138/185 (74%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M NHT++V++KILE Y GFE + VDVGGSLG+ L I SKYPHIKGINFDLPH+++ +
Sbjct: 178 MTNHTSIVMKKILENYIGFEGVSDFVDVGGSLGSNLAQILSKYPHIKGINFDLPHIVKEA 237
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P+ GV+H+GGDMF +P G+ IL+KWILHDW+DE C+++LKNC K++PE G++IV+E +
Sbjct: 238 PQIHGVEHIGGDMFDEIPRGEVILMKWILHDWNDEKCVEILKNCKKALPETGRIIVIEMI 297
Query: 121 LP-ELPENGTHSKINSL-ADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLW 178
+P E+ E +K NSL AD+ +M+ GGKERTK EF LA EAGF + + ++ W
Sbjct: 298 VPREVSETDLATK-NSLSADLTMMSLTSGGKERTKKEFEDLAKEAGFKLPKIIYGAYSYW 356
Query: 179 VMEFY 183
++E Y
Sbjct: 357 IIELY 361
|
|
| UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 97/185 (52%), Positives = 132/185 (71%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M NH+ ++ +K+L+ Y GF+ +VDVGG +G T+ A+ S++PHI+GIN+DLPHVI +
Sbjct: 184 MKNHSVIITKKLLDLYTGFDAASTVVDVGGGVGATVAAVVSRHPHIRGINYDLPHVISEA 243
Query: 61 PEYPGVKHVGGDMFQSVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119
P +PGV+HVGGDMF SVP G DAIL+KWILHDWSDEHC +LLKNC+ ++PE GKV+VVE
Sbjct: 244 PPFPGVEHVGGDMFASVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHGKVVVVEC 303
Query: 120 VLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWV 179
VLPE + + D++++ PGGKER + EF LA AGF+G + + N W
Sbjct: 304 VLPESSDATAREQGVFHVDMIMLAHNPGGKERYEREFRELARAAGFTGFKATYIYANAWA 363
Query: 180 MEFYK 184
+EF K
Sbjct: 364 IEFTK 368
|
|
| TAIR|locus:2199607 IGMT1 "indole glucosinolate O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 99/181 (54%), Positives = 133/181 (73%)
Query: 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYP 64
T V++K LE Y+GF+ +K LVDVGG +GNTL +TSKYP+IKGINFDL + +P YP
Sbjct: 193 TIAVVKKALEVYEGFKGVKVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYP 252
Query: 65 GVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124
GV+HV GDMF VP GDA+++K ILHDW+DE C+K+LKNC KS+PE GKV+V+E V P+
Sbjct: 253 GVEHVAGDMFVDVPTGDAMILKRILHDWTDEDCVKILKNCWKSLPENGKVVVIELVTPDE 312
Query: 125 PENGT-HSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFY 183
ENG ++ I D+L+ TQ GGKER++ EF LA +GF+ +FVC ++ W++EF
Sbjct: 313 AENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFTHCKFVCQAYHCWIIEFC 372
Query: 184 K 184
K
Sbjct: 373 K 373
|
|
| UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)] | Back alignment and assigned GO terms |
|---|
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 98/184 (53%), Positives = 130/184 (70%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M NH+ ++ +K+LE YKGFE + +VDVGG +G T+ AIT+ YP IKGINFDLPHVI +
Sbjct: 177 MKNHSIIITKKLLEVYKGFEGLGTIVDVGGGVGATVGAITAAYPAIKGINFDLPHVISEA 236
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
+PGV HVGGDMFQ VP+GDAIL+KWILHDWSDEHC LLKNC+ ++P GKV++VE +
Sbjct: 237 QPFPGVTHVGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYDALPAHGKVVLVECI 296
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LP PE ++ D++++ PGG+ER + EF LA AGF I+ + N + +
Sbjct: 297 LPVNPEATPKAQGVFHVDMIMLAHNPGGRERYEREFEALAKGAGFKAIKTTYIYANAFAI 356
Query: 181 EFYK 184
EF K
Sbjct: 357 EFTK 360
|
|
| TAIR|locus:2199582 IGMT4 "indole glucosinolate O-methyltransferase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 97/181 (53%), Positives = 131/181 (72%)
Query: 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYP 64
T V++K LE Y+GF+ + LVDVGG +GNTL + SKYP+IKGINFDL + +P YP
Sbjct: 193 TIAVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVASKYPNIKGINFDLTCALAQAPSYP 252
Query: 65 GVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124
GV+HV GDMF VP GDA+++K ILHDW+DE C+K+LKNC KS+PE GKV+V+E V P+
Sbjct: 253 GVEHVAGDMFVDVPTGDAMILKRILHDWTDEDCVKILKNCWKSLPESGKVVVIELVTPDE 312
Query: 125 PENGT-HSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFY 183
ENG ++ I D+L+ TQ GGKER++ EF LA +GF+ +FVC ++ W++EF
Sbjct: 313 AENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFTHCKFVCQAYHCWIIEFC 372
Query: 184 K 184
K
Sbjct: 373 K 373
|
|
| TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 95/185 (51%), Positives = 129/185 (69%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M +T++++K+L+ Y+GFE + LVDVGG G L +TSKYPHIKG+NFDL V+ +
Sbjct: 197 MSEPSTMIMKKVLDVYRGFEDVNTLVDVGGGNGTVLGLVTSKYPHIKGVNFDLAQVLTQA 256
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P YPGV+HV GDMF VP GDA+ +KWILHDW DE C+K+LKNC KS+PE GK+I+VE V
Sbjct: 257 PFYPGVEHVSGDMFVEVPKGDAVFMKWILHDWGDEDCIKILKNCWKSLPEKGKIIIVEFV 316
Query: 121 LPELPENGTHSKINSLA-DVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWV 179
P+ P+ G S A D+L++TQ GGKER+ +F LA +GF +C ++ V
Sbjct: 317 TPKEPKGGDLSSNTVFAMDLLMLTQCSGGKERSLSQFENLAFASGFLRCEIICLAYSYSV 376
Query: 180 MEFYK 184
+EF+K
Sbjct: 377 IEFHK 381
|
|
| TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 99/185 (53%), Positives = 128/185 (69%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M +T+V++K+LE Y+GFE + LVDVGG +G L ITSKYPHIKG+NFDL V+ +
Sbjct: 197 MSESSTMVMKKVLEEYRGFEDVNTLVDVGGGIGTILGLITSKYPHIKGVNFDLAQVLTQA 256
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P YPGVKHV GDMF VP GDAI +KWILHDW DE C+K+LKNC KS+PE GKVI+VE +
Sbjct: 257 PFYPGVKHVSGDMFIEVPKGDAIFMKWILHDWGDEDCIKILKNCWKSLPEKGKVIIVEMI 316
Query: 121 LPELPENGTHSKINSLA-DVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWV 179
P P+ S L D+L++TQ GGKER+ +F LA +GF +C ++ V
Sbjct: 317 TPMEPKPNDFSCNTVLGMDLLMLTQCSGGKERSLSQFENLAFASGFLLCEIICLSYSYSV 376
Query: 180 MEFYK 184
+EF+K
Sbjct: 377 IEFHK 381
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| TAIR|locus:2199597 IGMT3 "indole glucosinolate O-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 97/181 (53%), Positives = 132/181 (72%)
Query: 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYP 64
T V++K LE Y+GF+ + LVDVGG +GNTL +TSKYP+IKGINFDL + +P YP
Sbjct: 193 TIAVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPTYP 252
Query: 65 GVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124
GV+HV GDMF VP G+A+++K ILHDW+DE C+K+LKNC KS+P+ GKV+V+E V P+
Sbjct: 253 GVEHVAGDMFVDVPTGNAMILKRILHDWTDEDCVKILKNCWKSLPQNGKVVVIELVTPDE 312
Query: 125 PENGT-HSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFY 183
ENG ++ I D+L+ TQ GGKER++ EF LA +GFS +FVC ++ W++EF
Sbjct: 313 AENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFSHCQFVCQAYHCWIIEFC 372
Query: 184 K 184
K
Sbjct: 373 K 373
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| TAIR|locus:2199587 IGMT2 "indole glucosinolate O-methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 97/181 (53%), Positives = 131/181 (72%)
Query: 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYP 64
T V++K LE Y+GF+ + LVDVGG +GNTL +TSKYP+IKGINFDL + +P YP
Sbjct: 193 TIAVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYP 252
Query: 65 GVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124
GV+HV GDMF VP GDA+++K ILHDW+DE C+K+LKNC KS+PE GKV+V+E V P+
Sbjct: 253 GVEHVAGDMFVDVPTGDAMILKRILHDWTDEDCVKILKNCWKSLPENGKVVVIELVTPDE 312
Query: 125 PENGT-HSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFY 183
ENG ++ I D+L+ TQ GGKER++ EF LA + F+ +FVC ++ W++EF
Sbjct: 313 AENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASCFTHCKFVCQAYHCWIIEFC 372
Query: 184 K 184
K
Sbjct: 373 K 373
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00026177001 | SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (358 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 184 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 2e-79 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 1e-10 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 0.003 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 2e-79
Identities = 83/161 (51%), Positives = 109/161 (67%), Gaps = 2/161 (1%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M H+ LV++KILE F + LVDVGG G AI YPHIKGI FDLPHVI +
Sbjct: 81 MAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVRAYPHIKGIVFDLPHVIADA 140
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P V+ VGGD F+SVP DAIL+KW+LHDWSDE C+K+LK C++++P GGKVIVVE V
Sbjct: 141 PSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVKILKRCYEALPPGGKVIVVEMV 200
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLAT 161
LPE P++ +++ L D+ ++ GKERT+ E+ L +
Sbjct: 201 LPEDPDDDLETEVLLL-DLNMLVLNG-GKERTEKEWRKLLS 239
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This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 1e-10
Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKH-------VGGDMF 74
+K+++DVGG +G+ A+ +P + +LP I E K + D++
Sbjct: 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIY 209
Query: 75 -QSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123
+S P DA+L IL+ +++ + K ++ GG++++++ V+ +
Sbjct: 210 KESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 259
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 35.7 bits (83), Expect = 0.003
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 15/104 (14%)
Query: 25 LVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE------YPGVKHVGGDMFQSV 77
++D+G G+ + +P + DL P +++ + E P + V GD ++
Sbjct: 5 VLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDAL 64
Query: 78 PNG---DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118
DA+ I L+LL + GG++++
Sbjct: 65 DLLEGFDAVFIGGGGG-----DLLELLDALASLLKPGGRLVLNA 103
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Protein in this family function as methyltransferases. Length = 104 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 184 | |||
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.95 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.94 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.93 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.93 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.91 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.91 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.9 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.9 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.89 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.89 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.89 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.89 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.88 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.87 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.86 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.86 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.86 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.85 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.85 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.85 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.85 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.84 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.84 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.84 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.84 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.84 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.84 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.83 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.82 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.82 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.82 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.81 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.81 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.8 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.8 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.78 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.78 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.78 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.78 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.78 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.77 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.77 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.76 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.76 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.76 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.76 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.75 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.75 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.74 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.74 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.74 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.73 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.73 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.72 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.72 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.72 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.71 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.71 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.7 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.7 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.7 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.69 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.68 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.68 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.68 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.67 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.67 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.66 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.65 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.65 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.64 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.63 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.63 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.63 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.63 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.62 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.6 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.6 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.6 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.6 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.59 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.59 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.58 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.58 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.57 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.57 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.57 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.57 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.56 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.56 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.55 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.55 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.54 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.54 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.53 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.52 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.52 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.52 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.51 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.5 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.48 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.47 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.47 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.47 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.46 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.45 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.45 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.44 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.44 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.44 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.43 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.43 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.42 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.38 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.38 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.38 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.37 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.37 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.37 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.36 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.36 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.36 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.35 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.35 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.34 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.33 | |
| PLN02366 | 308 | spermidine synthase | 99.33 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.31 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.3 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.29 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.27 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.27 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 99.26 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.25 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.25 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.24 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.23 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.21 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.21 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.2 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 99.2 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.18 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.18 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.18 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.18 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.18 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.17 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.16 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.13 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.11 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.1 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.08 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.02 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 99.02 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.02 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.02 | |
| PLN02476 | 278 | O-methyltransferase | 99.01 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.01 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.01 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.0 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.99 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.99 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.97 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.97 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.94 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.94 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.93 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.92 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.92 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.91 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.91 | |
| PLN02823 | 336 | spermine synthase | 98.9 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.87 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.85 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.84 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.84 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.83 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.82 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.81 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.8 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.8 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.79 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.79 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.79 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.79 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.79 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.77 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.77 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.76 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.72 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.72 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.65 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.63 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.59 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.57 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.57 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.56 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.55 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.55 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.52 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.48 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.48 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.47 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.47 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.46 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.45 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.42 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.41 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.41 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.39 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.36 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.36 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.35 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.31 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.31 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.28 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.26 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.22 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.21 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.18 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.17 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 98.14 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.14 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.11 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.06 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.0 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 98.0 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.95 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.94 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.9 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.89 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.87 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.84 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.82 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.81 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.81 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.78 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.77 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.76 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.76 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.75 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.74 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.73 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.72 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.72 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.69 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 97.67 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.66 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.65 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.65 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.64 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.59 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.55 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.49 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.48 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.45 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.44 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 97.22 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.2 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.18 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.18 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 97.16 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.15 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.04 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 97.02 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.98 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 96.96 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.92 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.88 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 96.87 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 96.86 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.74 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.71 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 96.64 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.54 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.49 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.46 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.37 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 96.3 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.28 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 96.01 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 95.97 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.81 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 95.78 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 95.48 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 95.17 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 95.07 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 95.04 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.0 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.62 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 94.53 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 94.41 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 94.26 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 94.04 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 93.91 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 93.86 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 93.6 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 93.5 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 93.33 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 93.03 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 93.01 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 92.94 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 92.93 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 92.9 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 92.6 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 92.48 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 92.34 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 92.32 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 92.3 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 92.25 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 91.83 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 91.67 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 91.34 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 91.29 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 90.93 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 90.81 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 90.19 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 90.0 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 89.72 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 89.6 | |
| PHA01634 | 156 | hypothetical protein | 89.19 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 89.02 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 88.98 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 88.83 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 88.81 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 88.65 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 88.61 | |
| PF06557 | 170 | DUF1122: Protein of unknown function (DUF1122); In | 88.43 | |
| PRK13699 | 227 | putative methylase; Provisional | 88.34 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 87.93 | |
| PRK13699 | 227 | putative methylase; Provisional | 87.87 | |
| PF14740 | 289 | DUF4471: Domain of unknown function (DUF4471) | 87.51 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 87.33 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 86.68 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 86.62 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 86.47 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 86.14 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 86.01 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 86.01 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 85.96 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 85.68 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 84.98 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 84.86 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 84.63 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 84.22 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 84.13 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 83.46 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 83.33 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 83.23 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 83.23 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 83.18 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 83.05 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 82.94 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 82.88 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 82.51 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 82.47 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 81.91 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 81.77 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 81.77 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 80.59 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 80.58 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 80.58 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 80.34 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 80.24 |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=175.72 Aligned_cols=181 Identities=54% Similarity=0.916 Sum_probs=160.0
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-CCceEEEcccCccCCCCCE
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-PGVKHVGGDMFQSVPNGDA 82 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-~~i~~~~~d~~~~~~~~D~ 82 (184)
.+..+..++++.+..|+.....+|+|+|+|..+..++..+|+++++.+|++..++.+... ++|+.+-+|+++..|.+|+
T Consensus 160 l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~da 239 (342)
T KOG3178|consen 160 LSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDA 239 (342)
T ss_pred HHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCe
Confidence 445566677777777888999999999999999999999999999999999999999888 9999999999998888899
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC-CCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHH
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE-LPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLAT 161 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (184)
|++-+++|||+|++..++|+++++.|+|||++++.|...+. ..............++.++....++..++.++++.++.
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~ 319 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLP 319 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcch
Confidence 99999999999999999999999999999999999998775 22222234555677777877777799999999999999
Q ss_pred HcCCceeEEEeecCceEEEEEeC
Q 030025 162 EAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 162 ~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
++||...++......+++|+++|
T Consensus 320 ~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 320 EEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred hhcCceeEEEeccCccchheeCC
Confidence 99999999999999999999987
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-26 Score=169.09 Aligned_cols=150 Identities=37% Similarity=0.734 Sum_probs=126.3
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEEechhh
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWIL 89 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l 89 (184)
..+...+. +++..+|||||+|+|.++..+++++|+++++.+|+|.+++.+++.++++++.+|+++++|.+|++++.+++
T Consensus 90 ~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~~~l~~vL 168 (241)
T PF00891_consen 90 DILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVADVYLLRHVL 168 (241)
T ss_dssp HHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSESEEEEESSG
T ss_pred hhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccccceeeehhh
Confidence 56666766 99999999999999999999999999999999999999988888889999999999888879999999999
Q ss_pred hcCChHHHHHHHHHHHhhCCCC--cEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHH
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEG--GKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLAT 161 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pg--G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (184)
|+|++++...+|+++++.|+|| |+|+|.|...++....+.........++.++... +++.||.++|.++|+
T Consensus 169 h~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEALLK 241 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHHhC
Confidence 9999999999999999999999 9999999998876544332212246777777765 589999999999985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-25 Score=167.46 Aligned_cols=160 Identities=19% Similarity=0.428 Sum_probs=123.4
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCc-cCC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~-~~~ 78 (184)
...+.+++.+. +++..+|||||||+|.++..+++++|+++++++|.+.+++.++++ ++++++.+|+.+ +++
T Consensus 136 ~~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 136 FAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP 214 (306)
T ss_pred hHHHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC
Confidence 34566777776 888899999999999999999999999999999998888777543 579999999986 666
Q ss_pred CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhh--CCCccccCHHHH
Q 030025 79 NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQ--YPGGKERTKHEF 156 (184)
Q Consensus 79 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 156 (184)
.+|+|++.+++|++++++...+|+++++.|+|||++++.|...++... +... .......... .......+.++|
T Consensus 215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~e~ 290 (306)
T TIGR02716 215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN-PNFD---YLSHYILGAGMPFSVLGFKEQARY 290 (306)
T ss_pred CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC-chhh---HHHHHHHHcccccccccCCCHHHH
Confidence 669999999999998887789999999999999999999987755321 1111 1111110000 001123458999
Q ss_pred HHHHHHcCCceeEEE
Q 030025 157 TTLATEAGFSGIRFV 171 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~ 171 (184)
.++|+++||+.++++
T Consensus 291 ~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 291 KEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHcCCCeeEec
Confidence 999999999988765
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=156.71 Aligned_cols=175 Identities=19% Similarity=0.262 Sum_probs=133.0
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~ 76 (184)
...+.+.+.+.+. ..++.+|||||||||..+..+++..+..+++++|. +.|++.++++ .+++|+.+|+++ |
T Consensus 36 ~~~Wr~~~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP 114 (238)
T COG2226 36 HRLWRRALISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP 114 (238)
T ss_pred hHHHHHHHHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC
Confidence 4567788888887 66899999999999999999999998999999999 9999999876 238999999999 9
Q ss_pred CCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhh-hHhhhh---------
Q 030025 77 VPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLAD-VLVMTQ--------- 144 (184)
Q Consensus 77 ~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------- 144 (184)
+++. |++++++.++++++.+ ++|++++|+|||||++++.|...+........... .... ......
T Consensus 115 f~D~sFD~vt~~fglrnv~d~~--~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~-~~~~~v~P~~g~~~~~~~~~ 191 (238)
T COG2226 115 FPDNSFDAVTISFGLRNVTDID--KALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYIL-YYFKYVLPLIGKLVAKDAEA 191 (238)
T ss_pred CCCCccCEEEeeehhhcCCCHH--HHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHH-HHHHhHhhhhceeeecChHH
Confidence 9876 9999999999999776 78999999999999999999887654221110000 0001 111000
Q ss_pred -----CCCccccCHHHHHHHHHHcCCceeEEEeec-CceEEEEEe
Q 030025 145 -----YPGGKERTKHEFTTLATEAGFSGIRFVCFF-HNLWVMEFY 183 (184)
Q Consensus 145 -----~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~-~~~~~~~~~ 183 (184)
...-+..+.+++.+.++++||+.+...... +...+....
T Consensus 192 y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~ 236 (238)
T COG2226 192 YEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGY 236 (238)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEe
Confidence 001123489999999999999999866554 444444443
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-25 Score=160.72 Aligned_cols=169 Identities=18% Similarity=0.310 Sum_probs=87.9
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~ 77 (184)
.+.+.+++... ..++.+|||+|||||..+..+++.. +..+++++|. +.|++.|+++ .+++++++|+++ ++
T Consensus 34 ~wr~~~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 34 RWRRKLIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF 112 (233)
T ss_dssp ---SHHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred HHHHHHHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence 34556667666 7788899999999999999999884 6789999999 9999999864 589999999998 88
Q ss_pred CCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhh-----------
Q 030025 78 PNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQ----------- 144 (184)
Q Consensus 78 ~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 144 (184)
++. |+|++++.++++++.+ +.+++++|+|||||++++.|...+... .....+.++....
T Consensus 113 ~d~sfD~v~~~fglrn~~d~~--~~l~E~~RVLkPGG~l~ile~~~p~~~------~~~~~~~~y~~~ilP~~g~l~~~~ 184 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNFPDRE--RALREMYRVLKPGGRLVILEFSKPRNP------LLRALYKFYFKYILPLIGRLLSGD 184 (233)
T ss_dssp -TT-EEEEEEES-GGG-SSHH--HHHHHHHHHEEEEEEEEEEEEEB-SSH------HHHHHHHH----------------
T ss_pred CCCceeEEEHHhhHHhhCCHH--HHHHHHHHHcCCCeEEEEeeccCCCCc------hhhceeeeeecccccccccccccc
Confidence 765 9999999999998765 689999999999999999999877641 1111111111000
Q ss_pred --------CCCccccCHHHHHHHHHHcCCceeEEEeec-CceEEEEEeC
Q 030025 145 --------YPGGKERTKHEFTTLATEAGFSGIRFVCFF-HNLWVMEFYK 184 (184)
Q Consensus 145 --------~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~-~~~~~~~~~~ 184 (184)
..-.++.+.+++.++++++||+.++.+... +...+..++|
T Consensus 185 ~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 185 REAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp -------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 001134588999999999999999887765 4444555544
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-23 Score=153.40 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=119.8
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC---------CCceEEEcccCc-cC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY---------PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~---------~~i~~~~~d~~~-~~ 77 (184)
..+++.+. ..+..+|||+|||+|.++..+++.. +..+++++|+ +.|++.|+++ ++++++.+|+.+ ++
T Consensus 63 ~~~~~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~ 141 (261)
T PLN02233 63 RMAVSWSG-AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF 141 (261)
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC
Confidence 34445555 7778899999999999999998874 5679999999 9999988643 478999999988 77
Q ss_pred CCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcc-ccchhh-----------hhhHhhh
Q 030025 78 PNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTH-SKINSL-----------ADVLVMT 143 (184)
Q Consensus 78 ~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~ 143 (184)
++. |+|++..++||+++++ .++++++|+|||||++++.|...+........ .+.... ...+...
T Consensus 142 ~~~sfD~V~~~~~l~~~~d~~--~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l 219 (261)
T PLN02233 142 DDCYFDAITMGYGLRNVVDRL--KAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYL 219 (261)
T ss_pred CCCCEeEEEEecccccCCCHH--HHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHH
Confidence 654 9999999999998764 78999999999999999999876542110000 000000 0000000
Q ss_pred hCCCccccCHHHHHHHHHHcCCceeEEEeecCceE
Q 030025 144 QYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLW 178 (184)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~~~~~ 178 (184)
...-.++++.+++.++++++||+.++......+..
T Consensus 220 ~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~ 254 (261)
T PLN02233 220 KSSINEYLTGEELEKLALEAGFSSAKHYEISGGLM 254 (261)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCee
Confidence 00012356999999999999999998887654433
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=150.21 Aligned_cols=158 Identities=16% Similarity=0.233 Sum_probs=122.4
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCCCC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~~~ 80 (184)
...+.+++.+. +.+..+|||||||+|..+..+++.+ .++++++|+ +.+++.++++ +++.++..|+.+ +++..
T Consensus 39 ~~~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~ 116 (263)
T PTZ00098 39 EATTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPEN 116 (263)
T ss_pred HHHHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCC
Confidence 34678888887 8899999999999999999998765 579999999 8888887753 579999999987 66643
Q ss_pred --CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 81 --DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 81 --D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
|+|++..+++|++..+...++++++++|||||++++.+.......... ...... .. .......+..++.+
T Consensus 117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~-----~~~~~~--~~-~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWD-----EEFKAY--IK-KRKYTLIPIQEYGD 188 (263)
T ss_pred CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcH-----HHHHHH--HH-hcCCCCCCHHHHHH
Confidence 999999999998865667999999999999999999987654321110 011110 00 11123458999999
Q ss_pred HHHHcCCceeEEEeec
Q 030025 159 LATEAGFSGIRFVCFF 174 (184)
Q Consensus 159 ~l~~aGf~~i~~~~~~ 174 (184)
+++++||+.+++....
T Consensus 189 ~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 189 LIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHCCCCeeeEEeCc
Confidence 9999999999887653
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=154.46 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=115.3
Q ss_pred CCCCeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCCCCEEEechh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPNGDAILIKWI 88 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~D~i~~~~~ 88 (184)
++..+|||+|||+|..+..+++++ |+++++++|+ +.|++.|+++ .+++++.+|+.+ +++..|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 567899999999999999999874 7899999999 9999888653 368999999987 6665699999999
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhh-----------------hCCCcccc
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMT-----------------QYPGGKER 151 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 151 (184)
+||+++++...+++++++.|+|||.+++.|.......... . ......... .......+
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~--~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKIN--H---LLIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHH--H---HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 9999887778999999999999999999997654322111 0 011110000 00012356
Q ss_pred CHHHHHHHHHHcCCceeEEEeecCc
Q 030025 152 TKHEFTTLATEAGFSGIRFVCFFHN 176 (184)
Q Consensus 152 ~~~~~~~~l~~aGf~~i~~~~~~~~ 176 (184)
+.+++.++++++||+.++.......
T Consensus 207 s~~~~~~~l~~aGF~~~~~~~~~~~ 231 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVELWFQCFN 231 (239)
T ss_pred CHHHHHHHHHHcCCchHHHHHHHHh
Confidence 9999999999999998776544333
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-23 Score=154.09 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=113.1
Q ss_pred CCCCeEEEecCCcChHHHHHHhh--CCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCCCCEEEechh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSK--YPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPNGDAILIKWI 88 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~--~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~D~i~~~~~ 88 (184)
++..+|||||||+|..+..+++. .|.++++++|. +.|++.|+++ .+++++.+|+.+ +.+..|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 56789999999999999998884 58899999999 9999998764 379999999987 5555699999999
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhh-h-----------hHhh--hhCCCccccCHH
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLA-D-----------VLVM--TQYPGGKERTKH 154 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~--~~~~~~~~~~~~ 154 (184)
+||+++++...+++++++.|||||.+++.|........... ...... . +... .........+.+
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~--~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~ 212 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGE--LLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE 212 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHH
Confidence 99998777789999999999999999999976543211110 000000 0 0000 000011235899
Q ss_pred HHHHHHHHcCCceeEEEee
Q 030025 155 EFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 155 ~~~~~l~~aGf~~i~~~~~ 173 (184)
+..++|+++||+.++....
T Consensus 213 ~~~~~L~~aGF~~v~~~~~ 231 (247)
T PRK15451 213 THKARLHKAGFEHSELWFQ 231 (247)
T ss_pred HHHHHHHHcCchhHHHHHH
Confidence 9999999999998765543
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-22 Score=146.41 Aligned_cols=173 Identities=16% Similarity=0.191 Sum_probs=126.1
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~ 77 (184)
...+.+++.+. +++..+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++. ++++++.+|+.+ ++
T Consensus 32 ~~~~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 110 (231)
T TIGR02752 32 KWRKDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF 110 (231)
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC
Confidence 34567888887 8888999999999999999999885 6789999999 8898877653 578999999987 55
Q ss_pred CCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhh----h-----------hH
Q 030025 78 PNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLA----D-----------VL 140 (184)
Q Consensus 78 ~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~----~-----------~~ 140 (184)
+.. |+|++..++|++++.. .+++++.++|+|||++++.+...+.... ......... . ..
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~--~~l~~~~~~Lk~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~ 186 (231)
T TIGR02752 111 DDNSFDYVTIGFGLRNVPDYM--QVLREMYRVVKPGGKVVCLETSQPTIPG--FKQLYFFYFKYIMPLFGKLFAKSYKEY 186 (231)
T ss_pred CCCCccEEEEecccccCCCHH--HHHHHHHHHcCcCeEEEEEECCCCCChH--HHHHHHHHHcChhHHhhHHhcCCHHHH
Confidence 543 9999999999988664 7899999999999999998765433210 000000000 0 00
Q ss_pred hhhhCCCccccCHHHHHHHHHHcCCceeEEEeec-CceEEEEEeC
Q 030025 141 VMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFF-HNLWVMEFYK 184 (184)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~-~~~~~~~~~~ 184 (184)
..........++.+++.++++++||+.++++... +...+..++|
T Consensus 187 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 187 SWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0000001234588999999999999999988765 6666777765
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-22 Score=152.35 Aligned_cols=163 Identities=18% Similarity=0.260 Sum_probs=119.2
Q ss_pred HHhHHHHHHHhcCC-----CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcc
Q 030025 6 TLVLQKILEAYKGF-----EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGD 72 (184)
Q Consensus 6 ~~~~~~l~~~~~~~-----~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d 72 (184)
..+...+++.+. + .+..+|||||||+|.++..+++++ +.+++++|+ +.|++.+++. +++.++.+|
T Consensus 99 ~~~~~~~l~~~~-~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D 176 (340)
T PLN02244 99 IRMIEESLAWAG-VPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHHHhcC-CCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence 345667777776 5 567899999999999999999987 679999999 8888877652 479999999
Q ss_pred cCc-cCCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCc--cccchhhhhhHhhhhCCC
Q 030025 73 MFQ-SVPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGT--HSKINSLADVLVMTQYPG 147 (184)
Q Consensus 73 ~~~-~~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 147 (184)
+.+ +++.. |+|++..++||+++.. .++++++++|||||++++.+........... .............. ...
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~~d~~--~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~ 253 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHMPDKR--KFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAA-YYL 253 (340)
T ss_pred cccCCCCCCCccEEEECCchhccCCHH--HHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhh-ccC
Confidence 987 66644 9999999999998764 7899999999999999998875433211110 00000011111100 111
Q ss_pred ccccCHHHHHHHHHHcCCceeEEEee
Q 030025 148 GKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 148 ~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
....+.+++.++++++||..+++...
T Consensus 254 p~~~s~~~~~~~l~~aGf~~v~~~d~ 279 (340)
T PLN02244 254 PAWCSTSDYVKLAESLGLQDIKTEDW 279 (340)
T ss_pred CCCCCHHHHHHHHHHCCCCeeEeeeC
Confidence 22358999999999999999987654
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=148.83 Aligned_cols=156 Identities=20% Similarity=0.247 Sum_probs=113.7
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCC-CC-CEE
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVP-NG-DAI 83 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~-~~-D~i 83 (184)
.....+++.++ ..+..+|||||||+|.++..+++++|..+++++|+ +.|++.+++. +++++.+|+.+..+ .. |+|
T Consensus 16 ~~~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD~v 93 (255)
T PRK14103 16 RPFYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTDVV 93 (255)
T ss_pred CHHHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCceEE
Confidence 34577888887 77889999999999999999999998899999999 9999988764 68999999876322 23 999
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchh------hhhhH-hhhhCCCccccCHHHH
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINS------LADVL-VMTQYPGGKERTKHEF 156 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~ 156 (184)
+++.++||+++++ .+++++++.|||||++++..+.... ......... +.... ...........+.+++
T Consensus 94 ~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 168 (255)
T PRK14103 94 VSNAALQWVPEHA--DLLVRWVDELAPGSWIAVQVPGNFD---APSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGY 168 (255)
T ss_pred EEehhhhhCCCHH--HHHHHHHHhCCCCcEEEEEcCCCcC---ChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHH
Confidence 9999999998764 7899999999999999986432111 000000000 00000 0000111234589999
Q ss_pred HHHHHHcCCceeE
Q 030025 157 TTLATEAGFSGIR 169 (184)
Q Consensus 157 ~~~l~~aGf~~i~ 169 (184)
.++|+++||++..
T Consensus 169 ~~~l~~aGf~v~~ 181 (255)
T PRK14103 169 AELLTDAGCKVDA 181 (255)
T ss_pred HHHHHhCCCeEEE
Confidence 9999999998543
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=144.92 Aligned_cols=161 Identities=19% Similarity=0.218 Sum_probs=132.0
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~ 76 (184)
+..-.+.+++++. ++++++|||||||+|.++..+++++ +++++|+++ +++.+.++++ .++++...|..+.
T Consensus 57 Q~~k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~ 134 (283)
T COG2230 57 QRAKLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF 134 (283)
T ss_pred HHHHHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc
Confidence 4455778889998 9999999999999999999999999 899999999 7788877763 4788998988874
Q ss_pred CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHH
Q 030025 77 VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEF 156 (184)
Q Consensus 77 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
.+..|-|++..+++|+..+....+|+++++.|+|||++++.....++.... ....+.....++++..++..++
T Consensus 135 ~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i 207 (283)
T COG2230 135 EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEI 207 (283)
T ss_pred ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHH
Confidence 444699999999999998877899999999999999999988877654221 1222233333678888899999
Q ss_pred HHHHHHcCCceeEEEeec
Q 030025 157 TTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~~~~ 174 (184)
.+..+++||.+.......
T Consensus 208 ~~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 208 LELASEAGFVVLDVESLR 225 (283)
T ss_pred HHHHHhcCcEEehHhhhc
Confidence 999999999988766543
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=144.43 Aligned_cols=154 Identities=23% Similarity=0.298 Sum_probs=117.7
Q ss_pred cHHhHHHHHHHhcCC-CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGF-EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~-~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~-~~~ 78 (184)
...+.+.+++.+. + .+..+|||||||+|..+..+++..+..+++++|. +.|++.++++ .+++++.+|+.+ +++
T Consensus 97 ~e~~r~~~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~ 175 (340)
T PLN02490 97 TEDMRDDALEPAD-LSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFP 175 (340)
T ss_pred hHHHHHHHHhhcc-cCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCC
Confidence 3445556666665 4 3567999999999999999999887789999999 8999888764 578999999987 655
Q ss_pred CC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHH
Q 030025 79 NG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEF 156 (184)
Q Consensus 79 ~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
.. |+|++..++|++++++ .++++++++|+|||++++.+...+.... .....+.. ....+.+++
T Consensus 176 ~~sFDvVIs~~~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~~~------~r~~~~~~-------~~~~t~eEl 240 (340)
T PLN02490 176 TDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACLIGPVHPTFWL------SRFFADVW-------MLFPKEEEY 240 (340)
T ss_pred CCceeEEEEcChhhhCCCHH--HHHHHHHHhcCCCcEEEEEEecCcchhH------HHHhhhhh-------ccCCCHHHH
Confidence 43 9999999999998775 6899999999999999987754432100 00001110 112478999
Q ss_pred HHHHHHcCCceeEEEeec
Q 030025 157 TTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~~~~ 174 (184)
.++++++||+.+++....
T Consensus 241 ~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 241 IEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred HHHHHHCCCeEEEEEEcC
Confidence 999999999999887654
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-21 Score=143.53 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=116.0
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~ 76 (184)
+..-.+.+++++. ++++.+|||||||+|.++..+++++ +++++++.+ ++..+.++++ +++++...|+.+.
T Consensus 47 Q~~k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 47 QERKLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHHHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred HHHHHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence 4455778888998 9999999999999999999999998 789999999 7777766542 5689999998763
Q ss_pred CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHH
Q 030025 77 VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEF 156 (184)
Q Consensus 77 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
-+..|.|++..+++|++.+....+|+++.++|||||++++............... ...+.......+++...+..++
T Consensus 125 ~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~---~~~~~i~kyiFPgg~lps~~~~ 201 (273)
T PF02353_consen 125 PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERR---SSSDFIRKYIFPGGYLPSLSEI 201 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTT---CCCHHHHHHTSTTS---BHHHH
T ss_pred CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcC---CCceEEEEeeCCCCCCCCHHHH
Confidence 3345999999999999887778999999999999999999877765431110000 0012333333577888899999
Q ss_pred HHHHHHcCCceeEEEeec
Q 030025 157 TTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~~~~ 174 (184)
...++++||++..+....
T Consensus 202 ~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 202 LRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHHTT-EEEEEEE-H
T ss_pred HHHHhcCCEEEEEEEEcC
Confidence 999999999988877654
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-21 Score=135.32 Aligned_cols=169 Identities=15% Similarity=0.219 Sum_probs=125.1
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCccCCC--CCEEE
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQSVPN--GDAIL 84 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~~~~~--~D~i~ 84 (184)
+.+++.+.+ ..+..+|.|+|||+|..+..+++++|...++|+|. ++|++.|+++ ++++|..+|+.+..|. .|+++
T Consensus 19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence 567888888 89999999999999999999999999999999999 9999999776 9999999999884443 39999
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhh---hH-hhhhC--CCccccCHHHHHH
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLAD---VL-VMTQY--PGGKERTKHEFTT 158 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~--~~~~~~~~~~~~~ 158 (184)
++.+||++++. .++|.++...|.|||.|-+.-+.. ...+.........+ .. .+... ......++..+.+
T Consensus 98 aNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN---~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~ 172 (257)
T COG4106 98 ANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDN---LDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYE 172 (257)
T ss_pred hhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCc---cCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHH
Confidence 99999999865 489999999999999999855432 22222111111111 00 00000 0122348899999
Q ss_pred HHHHcCCceeEEEee------cCceEEEEEeC
Q 030025 159 LATEAGFSGIRFVCF------FHNLWVMEFYK 184 (184)
Q Consensus 159 ~l~~aGf~~i~~~~~------~~~~~~~~~~~ 184 (184)
+|...+ ..+.++.. .+...|++|.|
T Consensus 173 lLa~~~-~rvDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 173 LLAPLA-CRVDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HhCccc-ceeeeeeeeccccCCCccchhhhee
Confidence 999887 44555543 26667777765
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=150.87 Aligned_cols=153 Identities=16% Similarity=0.264 Sum_probs=118.9
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCCC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~~ 80 (184)
....+++.+. +++..+|||||||+|..+..+++.+ +++++++|+ +.+++.|+++ .++.++.+|+.+ +++..
T Consensus 254 ~te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~ 331 (475)
T PLN02336 254 TTKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDN 331 (475)
T ss_pred HHHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCC
Confidence 4566778877 7788899999999999999998876 679999999 8898887653 468999999987 55543
Q ss_pred --CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 81 --DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 81 --D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
|+|++..+++|+++++ .++++++++|||||++++.+.......... . ...... ..+...++..++.+
T Consensus 332 ~fD~I~s~~~l~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~---~~~~~~---~~g~~~~~~~~~~~ 400 (475)
T PLN02336 332 SFDVIYSRDTILHIQDKP--ALFRSFFKWLKPGGKVLISDYCRSPGTPSP---E---FAEYIK---QRGYDLHDVQAYGQ 400 (475)
T ss_pred CEEEEEECCcccccCCHH--HHHHHHHHHcCCCeEEEEEEeccCCCCCcH---H---HHHHHH---hcCCCCCCHHHHHH
Confidence 9999999999998765 789999999999999999987654321111 0 111111 11334668999999
Q ss_pred HHHHcCCceeEEEee
Q 030025 159 LATEAGFSGIRFVCF 173 (184)
Q Consensus 159 ~l~~aGf~~i~~~~~ 173 (184)
+++++||+.+++...
T Consensus 401 ~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 401 MLKDAGFDDVIAEDR 415 (475)
T ss_pred HHHHCCCeeeeeecc
Confidence 999999999876543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-20 Score=140.29 Aligned_cols=155 Identities=12% Similarity=0.043 Sum_probs=110.3
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCC-------CCCCceEEEcccCc-cCCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSP-------EYPGVKHVGGDMFQ-SVPN 79 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~-------~~~~i~~~~~d~~~-~~~~ 79 (184)
...++.++. ..++++|||||||+|.++..++...+ ..++|+|. +.|+..++ ...++.+...++.+ +...
T Consensus 110 ~~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~ 187 (314)
T TIGR00452 110 WDRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELY 187 (314)
T ss_pred HHHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCC
Confidence 355677766 56678999999999999999988765 37999998 66765321 12567888888776 3333
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
. |+|++..+++|+.++. .+|+++++.|+|||.|++.+...+.......... +.+..... ....++.+++..
T Consensus 188 ~FD~V~s~gvL~H~~dp~--~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~-----~ry~k~~n-v~flpS~~~L~~ 259 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKSPL--EHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK-----DRYAKMKN-VYFIPSVSALKN 259 (314)
T ss_pred CcCEEEEcchhhccCCHH--HHHHHHHHhcCCCCEEEEEEEEecCccccccCch-----HHHHhccc-cccCCCHHHHHH
Confidence 4 9999999999998774 7899999999999999998876544321110000 00000000 112358999999
Q ss_pred HHHHcCCceeEEEee
Q 030025 159 LATEAGFSGIRFVCF 173 (184)
Q Consensus 159 ~l~~aGf~~i~~~~~ 173 (184)
+++++||+.+++...
T Consensus 260 ~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 260 WLEKVGFENFRILDV 274 (314)
T ss_pred HHHHCCCeEEEEEec
Confidence 999999999987654
|
Known examples to date are restricted to the proteobacteria. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=130.74 Aligned_cols=136 Identities=19% Similarity=0.268 Sum_probs=98.4
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCC-CC-CEEEechhhhcCCh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVP-NG-DAILIKWILHDWSD 94 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~-~~-D~i~~~~~l~~~~~ 94 (184)
..+.++|||||||+|.++..+.+.. .+++++|. +.+++. .++.....+... +.+ +. |+|+++.++||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 5688999999999999999997763 39999999 888877 334444443333 222 23 99999999999997
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhh-CCCccccCHHHHHHHHHHcCCceeE
Q 030025 95 EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQ-YPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 95 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
+. .+++++.+.|||||++++.++...... ............ ......++.++|.++++++||++++
T Consensus 94 ~~--~~l~~l~~~LkpgG~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PE--EFLKELSRLLKPGGYLVISDPNRDDPS-------PRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HH--HHHHHHHHCEEEEEEEEEEEEBTTSHH-------HHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HH--HHHHHHHHhcCCCCEEEEEEcCCcchh-------hhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 54 899999999999999999998764310 000111000000 0234678999999999999999875
|
... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=142.70 Aligned_cols=155 Identities=13% Similarity=0.088 Sum_probs=111.3
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCC-------CCCCceEEEcccCc-cCCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSP-------EYPGVKHVGGDMFQ-SVPN 79 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~-------~~~~i~~~~~d~~~-~~~~ 79 (184)
.+.++.+++ .-++++|||||||+|.++..+++..+. .++|+|. +.++..++ ...++.++..|+.+ +.+.
T Consensus 111 ~~~l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~ 188 (322)
T PRK15068 111 WDRVLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALK 188 (322)
T ss_pred HHHHHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcC
Confidence 345566776 345689999999999999999998654 6999998 66664322 12579999999987 5544
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
. |+|++..++||+.++. .+|+++++.|+|||.+++.+...+......... .+.+... ......++.+++.+
T Consensus 189 ~FD~V~s~~vl~H~~dp~--~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p-----~~~y~~~-~~~~~lps~~~l~~ 260 (322)
T PRK15068 189 AFDTVFSMGVLYHRRSPL--DHLKQLKDQLVPGGELVLETLVIDGDENTVLVP-----GDRYAKM-RNVYFIPSVPALKN 260 (322)
T ss_pred CcCEEEECChhhccCCHH--HHHHHHHHhcCCCcEEEEEEEEecCCCccccCc-----hhHHhcC-ccceeCCCHHHHHH
Confidence 4 9999999999988764 789999999999999999876654432211100 0000000 00011348999999
Q ss_pred HHHHcCCceeEEEee
Q 030025 159 LATEAGFSGIRFVCF 173 (184)
Q Consensus 159 ~l~~aGf~~i~~~~~ 173 (184)
+++++||+.+++...
T Consensus 261 ~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 261 WLERAGFKDVRIVDV 275 (322)
T ss_pred HHHHcCCceEEEEeC
Confidence 999999999988754
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-21 Score=145.87 Aligned_cols=149 Identities=10% Similarity=0.017 Sum_probs=106.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCC-C-CEEEechhh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPN-G-DAILIKWIL 89 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~-~-D~i~~~~~l 89 (184)
+..+|||||||+|.++..+++. +.+++++|. +.+++.|+++ .++.++++|+.+ +.+. . |+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4569999999999999988864 679999999 8999888753 368999999876 4443 3 999999999
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
||+++++ .++++++++|||||.+++.+................................++++++.++++++||+.++
T Consensus 209 eHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~ 286 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKE 286 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEE
Confidence 9999875 79999999999999999987653211000000000000000000000012467999999999999999988
Q ss_pred EEee
Q 030025 170 FVCF 173 (184)
Q Consensus 170 ~~~~ 173 (184)
+...
T Consensus 287 ~~G~ 290 (322)
T PLN02396 287 MAGF 290 (322)
T ss_pred Eeee
Confidence 7543
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=132.77 Aligned_cols=172 Identities=19% Similarity=0.225 Sum_probs=123.5
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S 76 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~ 76 (184)
.....++..+. ..+..+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++ +++.+...|+.+ +
T Consensus 38 ~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 116 (239)
T PRK00216 38 VWRRKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP 116 (239)
T ss_pred HHHHHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC
Confidence 34455666666 56778999999999999999999886 689999999 8888777653 468899999887 4
Q ss_pred CCC--CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhh--h---HhhhhCC---
Q 030025 77 VPN--GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLAD--V---LVMTQYP--- 146 (184)
Q Consensus 77 ~~~--~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~--- 146 (184)
.+. .|+|++..++|++++.. .+++++.+.|+|||++++.+...+..... ........ . .......
T Consensus 117 ~~~~~~D~I~~~~~l~~~~~~~--~~l~~~~~~L~~gG~li~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 191 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNVPDID--KALREMYRVLKPGGRLVILEFSKPTNPPL---KKAYDFYLFKVLPLIGKLISKNAE 191 (239)
T ss_pred CCCCCccEEEEecccccCCCHH--HHHHHHHHhccCCcEEEEEEecCCCchHH---HHHHHHHHHhhhHHHHHHHcCCcH
Confidence 433 39999999999988664 78999999999999999988765432110 00000000 0 0000000
Q ss_pred --------CccccCHHHHHHHHHHcCCceeEEEeec-CceEEEEEeC
Q 030025 147 --------GGKERTKHEFTTLATEAGFSGIRFVCFF-HNLWVMEFYK 184 (184)
Q Consensus 147 --------~~~~~~~~~~~~~l~~aGf~~i~~~~~~-~~~~~~~~~~ 184 (184)
-...++.++|.++++++||+.+++.... +...++.++|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 192 AYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 0123578999999999999999998865 5666776665
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.1e-20 Score=134.35 Aligned_cols=136 Identities=17% Similarity=0.292 Sum_probs=107.1
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCCC-CEEEechhhhcC
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPNG-DAILIKWILHDW 92 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~-D~i~~~~~l~~~ 92 (184)
++|||||||+|..+..+++.++.++++++|+ +.+++.++++ ++++++..|+.+ +.+.. |+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999999998899999999 8888877653 468999999866 55544 999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
++. ..+|++++++|+|||++++.++.......... . .......+..+|.++++++||+.++...
T Consensus 81 ~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--------~------~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KDK--MDLFSNISRHLKDGGHLVLADFIANLLSAIEH--------E------ETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCH--HHHHHHHHHHcCCCCEEEEEEcccccCccccc--------c------ccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 875 47999999999999999999875432110000 0 0011235789999999999999998876
Q ss_pred ec
Q 030025 173 FF 174 (184)
Q Consensus 173 ~~ 174 (184)
..
T Consensus 145 ~~ 146 (224)
T smart00828 145 AS 146 (224)
T ss_pred Cc
Confidence 54
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=129.88 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=108.3
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~~ 80 (184)
.+.+++.++ ..+..+|||+|||+|..+..++++ ..+++++|+ +.+++.+++. .++++...|+.+ +++..
T Consensus 19 ~~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 19 HSEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred hHHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 456777777 667799999999999999999986 469999999 8888877653 458888899876 55544
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+|++..++||+++++...++++++++|+|||++++.+.......... ......++.+++.++
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~----------------~~~~~~~~~~el~~~ 159 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRY 159 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC----------------CCCCCccCHHHHHHH
Confidence 999999999998877778999999999999999776554332211000 000123578899999
Q ss_pred HHHcCCceeEEE
Q 030025 160 ATEAGFSGIRFV 171 (184)
Q Consensus 160 l~~aGf~~i~~~ 171 (184)
++ ||+.++..
T Consensus 160 ~~--~~~~~~~~ 169 (197)
T PRK11207 160 YE--GWEMVKYN 169 (197)
T ss_pred hC--CCeEEEee
Confidence 87 89887763
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=135.45 Aligned_cols=108 Identities=20% Similarity=0.328 Sum_probs=94.1
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCccCC-CC-CEE
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQSVP-NG-DAI 83 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~~~~-~~-D~i 83 (184)
....++..++ ..+..+|||||||+|.++..+++.+|..+++++|+ +.|++.++++ +++.++.+|+.+..+ .. |+|
T Consensus 19 ~~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 19 PARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 5677888887 78889999999999999999999998899999999 8999988776 789999999876322 33 999
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+++.++||+++.. .+++++.++|||||.+++..
T Consensus 98 ~~~~~l~~~~d~~--~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 98 FANASLQWLPDHL--ELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEccChhhCCCHH--HHHHHHHHhcCCCcEEEEEC
Confidence 9999999998654 78999999999999999863
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-19 Score=131.91 Aligned_cols=162 Identities=20% Similarity=0.289 Sum_probs=117.9
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~ 77 (184)
....+.++..+. +.+..+|||+|||+|.++..+++.+ |..+++++|. +.+++.++++ +++.+...|+.+ ++
T Consensus 5 ~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 5 RRYRARTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCC
Confidence 445566777777 8889999999999999999999987 7789999999 8888777653 578999999876 55
Q ss_pred CCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 78 PNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 78 ~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+.. |+|++..+++|++++. .+++++.++|+|||.+++.++............ .................++..+
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 159 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPA--RALAEIARVLRPGGRVVVLDTDWDTLVWHSGDR--ALMRKILNFWSDHFADPWLGRR 159 (241)
T ss_pred CCCCceEEEEechhhccCCHH--HHHHHHHHHhcCCcEEEEEecCCCceeecCCCh--HHHHHHHHHHHhcCCCCcHHHH
Confidence 433 9999999999998764 789999999999999999886532211110000 0111111111111223456788
Q ss_pred HHHHHHHcCCceeEEEe
Q 030025 156 FTTLATEAGFSGIRFVC 172 (184)
Q Consensus 156 ~~~~l~~aGf~~i~~~~ 172 (184)
+.++++++||+.+++..
T Consensus 160 ~~~~l~~aGf~~~~~~~ 176 (241)
T PRK08317 160 LPGLFREAGLTDIEVEP 176 (241)
T ss_pred HHHHHHHcCCCceeEEE
Confidence 99999999999876643
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-20 Score=131.73 Aligned_cols=157 Identities=20% Similarity=0.239 Sum_probs=118.8
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC------CeEEEeec-hhHhhhCCCC---------CCceEEE
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH------IKGINFDL-PHVIQHSPEY---------PGVKHVG 70 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~------~~~~~~D~-~~~~~~a~~~---------~~i~~~~ 70 (184)
.+-+.+..++. ..+..++||++||||.++..+++..+. .+++++|+ ++|+..++++ .++.++.
T Consensus 87 lWKd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~ 165 (296)
T KOG1540|consen 87 LWKDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVE 165 (296)
T ss_pred HHHHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEe
Confidence 34556667776 666799999999999999999998766 79999999 9999877654 3489999
Q ss_pred cccCc-cCCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhh--H-h---
Q 030025 71 GDMFQ-SVPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADV--L-V--- 141 (184)
Q Consensus 71 ~d~~~-~~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~--~-~--- 141 (184)
+|+++ |+++. |..++.+.+.++++++ +.+++++|+|||||++.+.|....+.. ...+....+.+ . .
T Consensus 166 ~dAE~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpGGrf~cLeFskv~~~---~l~~fy~~ysf~VlpvlG~ 240 (296)
T KOG1540|consen 166 GDAEDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPGGRFSCLEFSKVENE---PLKWFYDQYSFDVLPVLGE 240 (296)
T ss_pred CCcccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCCcEEEEEEccccccH---HHHHHHHhhhhhhhchhhH
Confidence 99999 88876 9999999999999886 789999999999999999887654421 00010000000 0 0
Q ss_pred ----------hhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 142 ----------MTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 142 ----------~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
.....=.++.+.+++.++.++|||+...
T Consensus 241 ~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 241 IIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 0000012345889999999999999887
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.3e-20 Score=136.45 Aligned_cols=158 Identities=15% Similarity=0.152 Sum_probs=109.3
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc--cCC-
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ--SVP- 78 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~--~~~- 78 (184)
..+++.++ ++..+|||+|||+|.++..+++. ..+++++|+ +.|++.|+++ ++++++++|+.+ +.+
T Consensus 35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 35666655 45689999999999999999987 468999999 8999888763 468899999876 233
Q ss_pred CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCC-ccccchhh-hhhHh--hhhCCCccccCH
Q 030025 79 NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENG-THSKINSL-ADVLV--MTQYPGGKERTK 153 (184)
Q Consensus 79 ~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~~~~~~~-~~~~~--~~~~~~~~~~~~ 153 (184)
.. |+|++..++||++++. .+++++.++|||||++++............ ........ ..... ..........++
T Consensus 111 ~~fD~V~~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 188 (255)
T PRK11036 111 TPVDLILFHAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDP 188 (255)
T ss_pred CCCCEEEehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCH
Confidence 33 9999999999998765 789999999999999998765432110000 00000000 00000 000001234689
Q ss_pred HHHHHHHHHcCCceeEEEee
Q 030025 154 HEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 154 ~~~~~~l~~aGf~~i~~~~~ 173 (184)
+++.++++++||++++..-.
T Consensus 189 ~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 189 EQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred HHHHHHHHHCCCeEeeeeeE
Confidence 99999999999998866543
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-19 Score=128.52 Aligned_cols=169 Identities=15% Similarity=0.217 Sum_probs=122.5
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC-CeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCCC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH-IKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVPN 79 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~~ 79 (184)
.....+++.+. ..+..+|||+|||+|..+..+++..+. .+++++|. +.+++.++++ .++.+..+|+.+ +.+.
T Consensus 26 ~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 26 LWRRRAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHHHHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCC
Confidence 34556666666 667899999999999999999999876 79999999 8888777653 468999999987 4443
Q ss_pred -C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhh--------hh--CC-
Q 030025 80 -G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVM--------TQ--YP- 146 (184)
Q Consensus 80 -~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~- 146 (184)
. |+|++..++|+.++.. .+++++.+.|+|||++++.+...+.... . ......... .. ..
T Consensus 105 ~~~D~i~~~~~~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~ 176 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVTDIQ--KALREMYRVLKPGGRLVILEFSKPANAL--L----KKFYKFYLKNVLPSIGGLISKNAE 176 (223)
T ss_pred CcEEEEEEeeeeCCcccHH--HHHHHHHHHcCCCcEEEEEEecCCCchh--h----HHHHHHHHHHhhhhhhhhhcCCch
Confidence 3 9999999999987654 7899999999999999998875443210 0 000000000 00 00
Q ss_pred --------CccccCHHHHHHHHHHcCCceeEEEeecCc-eEEEEEeC
Q 030025 147 --------GGKERTKHEFTTLATEAGFSGIRFVCFFHN-LWVMEFYK 184 (184)
Q Consensus 147 --------~~~~~~~~~~~~~l~~aGf~~i~~~~~~~~-~~~~~~~~ 184 (184)
.....+.++|.++|+++||+.+++...... ..++.++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 177 AYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 012347899999999999999998887655 34555554
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=133.32 Aligned_cols=145 Identities=18% Similarity=0.267 Sum_probs=109.4
Q ss_pred CCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCCC--CEEEech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPNG--DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~~--D~i~~~~ 87 (184)
+++..+|||+|||+|..+..+++. .+..+++++|. +.+++.|+++ ++++++.+|+.+ ++++. |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 567889999999999988877776 45568999999 8999988763 578999999987 65543 9999999
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCce
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSG 167 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 167 (184)
++|++++.. .++++++++|||||++++.+........ .. .......+. ......++..++.++++++||..
T Consensus 155 v~~~~~d~~--~~l~~~~r~LkpGG~l~i~~~~~~~~~~----~~--~~~~~~~~~-~~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPDKE--RVFKEAFRVLKPGGRFAISDVVLRGELP----EE--IRNDAELYA-GCVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCCHH--HHHHHHHHHcCCCcEEEEEEeeccCCCC----HH--HHHhHHHHh-ccccCCCCHHHHHHHHHHCCCCc
Confidence 999987654 7899999999999999999876533210 00 111111111 11234568899999999999999
Q ss_pred eEEEe
Q 030025 168 IRFVC 172 (184)
Q Consensus 168 i~~~~ 172 (184)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87644
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-20 Score=120.69 Aligned_cols=98 Identities=18% Similarity=0.339 Sum_probs=83.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEccc-Cc-cCCC-CCEEEech-h
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDM-FQ-SVPN-GDAILIKW-I 88 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~-~~-~~~~-~D~i~~~~-~ 88 (184)
|+.+|||||||+|.++..++++++..+++++|. +.+++.++++ ++++++++|+ .. .... .|+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 468999999999999999999889999999999 8999888664 7899999999 33 3333 49999998 6
Q ss_pred hhcCC-hHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 89 LHDWS-DEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 89 l~~~~-~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
++++. .++..++++++++.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 66543 3566789999999999999999975
|
... |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=128.71 Aligned_cols=151 Identities=16% Similarity=0.214 Sum_probs=112.9
Q ss_pred HHhHHHHHHHhcCC--CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--CCceEEEcccCc-cCCC
Q 030025 6 TLVLQKILEAYKGF--EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--PGVKHVGGDMFQ-SVPN 79 (184)
Q Consensus 6 ~~~~~~l~~~~~~~--~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--~~i~~~~~d~~~-~~~~ 79 (184)
..+...+++.+... .+..+|||+|||+|.++..+++..+..+++++|. +.++..+++. +++.++.+|+.+ +++.
T Consensus 17 ~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 96 (240)
T TIGR02072 17 REMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLED 96 (240)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCC
Confidence 34555666665521 3457999999999999999999999899999999 8888777654 578999999987 5444
Q ss_pred C--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHH
Q 030025 80 G--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFT 157 (184)
Q Consensus 80 ~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
. |+|++..++||..+.. .++++++++|+|||.+++.++..... .............+.+..+|.
T Consensus 97 ~~fD~vi~~~~l~~~~~~~--~~l~~~~~~L~~~G~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 162 (240)
T TIGR02072 97 SSFDLIVSNLALQWCDDLS--QALSELARVLKPGGLLAFSTFGPGTL------------HELRQSFGQHGLRYLSLDELK 162 (240)
T ss_pred CceeEEEEhhhhhhccCHH--HHHHHHHHHcCCCcEEEEEeCCccCH------------HHHHHHHHHhccCCCCHHHHH
Confidence 3 9999999999987654 78999999999999999987544321 011100010134456889999
Q ss_pred HHHHHcCCceeEEE
Q 030025 158 TLATEAGFSGIRFV 171 (184)
Q Consensus 158 ~~l~~aGf~~i~~~ 171 (184)
++++++ |+.+.+.
T Consensus 163 ~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 163 ALLKNS-FELLTLE 175 (240)
T ss_pred HHHHHh-cCCcEEE
Confidence 999998 8877654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-20 Score=129.48 Aligned_cols=99 Identities=24% Similarity=0.429 Sum_probs=86.6
Q ss_pred CCCCeEEEecCCcChHHHHHHh-hCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c--CCCC-CEEEech
Q 030025 20 EHIKQLVDVGGSLGNTLKAITS-KYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S--VPNG-DAILIKW 87 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~-~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~--~~~~-D~i~~~~ 87 (184)
.+..+|||+|||+|.++..+++ .++..+++++|+ +.|++.|++. ++++|.++|+.+ + ++.. |+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 4578999999999999999994 578899999999 9999998773 689999999998 4 3333 9999999
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
++||+++++ .+++++.+.|+|||.+++.+..
T Consensus 82 ~l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPE--KVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHH--HHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHH--HHHHHHHHHcCCCcEEEEEECC
Confidence 999998775 7899999999999999999987
|
... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=123.66 Aligned_cols=142 Identities=13% Similarity=0.108 Sum_probs=105.4
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---C--CceEEEcccCc-cCCCC-
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---P--GVKHVGGDMFQ-SVPNG- 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~--~i~~~~~d~~~-~~~~~- 80 (184)
...+++.+. ..+..+|||+|||+|..+..++++ ..+++++|. +.|++.+++. . ++.+...|+.. +++..
T Consensus 19 ~~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 19 HSAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred hHHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 456777777 566789999999999999999986 468999999 8888876543 2 36677777765 44444
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLA 160 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (184)
|+|++..++||++.++...+++++++.|+|||++++.+.......... .+....++.+++.++|
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~----------------~~~~~~~~~~el~~~f 159 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH----------------MPFSFTFKEDELRQYY 159 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC----------------CCcCccCCHHHHHHHh
Confidence 999999999999877777999999999999999777654332210000 0012245899999998
Q ss_pred HHcCCceeEEE
Q 030025 161 TEAGFSGIRFV 171 (184)
Q Consensus 161 ~~aGf~~i~~~ 171 (184)
+ +|+++...
T Consensus 160 ~--~~~~~~~~ 168 (195)
T TIGR00477 160 A--DWELLKYN 168 (195)
T ss_pred C--CCeEEEee
Confidence 7 58877665
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-18 Score=127.37 Aligned_cols=152 Identities=12% Similarity=0.126 Sum_probs=112.4
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc-cCCCC
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~~~~ 80 (184)
.+...++.+++.++ ..+..+|||+|||+|.++..+++. ..+++++|+ +.|++.++++ +...++.+|+.+ +++..
T Consensus 26 ~q~~~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~ 102 (251)
T PRK10258 26 LQRQSADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATA 102 (251)
T ss_pred HHHHHHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCC
Confidence 34556777888887 556789999999999999988775 479999999 9999988876 456889999987 66543
Q ss_pred --CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 81 --DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 81 --D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
|+|+++.++|+.++.. .+++++.++|+|||.++++.+...... +....+.... .......+.+.+++.+
T Consensus 103 ~fD~V~s~~~l~~~~d~~--~~l~~~~~~Lk~gG~l~~~~~~~~~~~-----el~~~~~~~~--~~~~~~~~~~~~~l~~ 173 (251)
T PRK10258 103 TFDLAWSNLAVQWCGNLS--TALRELYRVVRPGGVVAFTTLVQGSLP-----ELHQAWQAVD--ERPHANRFLPPDAIEQ 173 (251)
T ss_pred cEEEEEECchhhhcCCHH--HHHHHHHHHcCCCeEEEEEeCCCCchH-----HHHHHHHHhc--cCCccccCCCHHHHHH
Confidence 9999999999987764 789999999999999999876543211 0000000000 0011234568999999
Q ss_pred HHHHcCCce
Q 030025 159 LATEAGFSG 167 (184)
Q Consensus 159 ~l~~aGf~~ 167 (184)
+++..|++.
T Consensus 174 ~l~~~~~~~ 182 (251)
T PRK10258 174 ALNGWRYQH 182 (251)
T ss_pred HHHhCCcee
Confidence 999888764
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-19 Score=127.80 Aligned_cols=155 Identities=13% Similarity=0.075 Sum_probs=111.6
Q ss_pred HHHHHHHhcCCCC------CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------C-----CceEE
Q 030025 9 LQKILEAYKGFEH------IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------P-----GVKHV 69 (184)
Q Consensus 9 ~~~l~~~~~~~~~------~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~-----~i~~~ 69 (184)
.+.+++..+...+ +++|||+|||+|-++..|++.. ..++|+|. .+|++.|+++ + ++++.
T Consensus 71 ~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~ 148 (282)
T KOG1270|consen 71 RDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYE 148 (282)
T ss_pred HHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehh
Confidence 4455555532233 3789999999999999999984 78999999 9999999875 1 36677
Q ss_pred EcccCccCCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhC----
Q 030025 70 GGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQY---- 145 (184)
Q Consensus 70 ~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 145 (184)
+.|.+..-+.+|+|+|..+++|+.+++ ++++.+.+.|||||.|++++....-.... .....+.+.+...
T Consensus 149 ~~~~E~~~~~fDaVvcsevleHV~dp~--~~l~~l~~~lkP~G~lfittinrt~lS~~-----~~i~~~E~vl~ivp~Gt 221 (282)
T KOG1270|consen 149 DTDVEGLTGKFDAVVCSEVLEHVKDPQ--EFLNCLSALLKPNGRLFITTINRTILSFA-----GTIFLAEIVLRIVPKGT 221 (282)
T ss_pred hcchhhcccccceeeeHHHHHHHhCHH--HHHHHHHHHhCCCCceEeeehhhhHHHhh-----ccccHHHHHHHhcCCCC
Confidence 777776445579999999999998774 89999999999999999998765432110 0011111111111
Q ss_pred -CCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 146 -PGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 146 -~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
....+.+++++..+++.+|+....+.-
T Consensus 222 h~~ekfi~p~e~~~~l~~~~~~v~~v~G 249 (282)
T KOG1270|consen 222 HTWEKFINPEELTSILNANGAQVNDVVG 249 (282)
T ss_pred cCHHHcCCHHHHHHHHHhcCcchhhhhc
Confidence 112356999999999999998776543
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=122.73 Aligned_cols=146 Identities=17% Similarity=0.178 Sum_probs=102.5
Q ss_pred CCCCCeEEEecCCcChHHHHHHhh----CCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCc-cCCC-C-CEEEech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSK----YPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQ-SVPN-G-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~-~~~~-~-D~i~~~~ 87 (184)
..+..+|||+|||+|.++..+++. .++.+++++|+ +.|++.|++. +++.+...+... +.++ . |+|+++.
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 456789999999999999888764 35679999999 9999988775 567777766544 3333 3 9999999
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhh----hCC-----CccccCHHHHHH
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMT----QYP-----GGKERTKHEFTT 158 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~ 158 (184)
++||+++++...++++++++++ |.+++.+...+... ............ ... -.+.++.+++.+
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~------~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ 209 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLA------YALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAA 209 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHH------HHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHH
Confidence 9999998877789999999998 66777665543210 000000000000 000 124679999999
Q ss_pred HHHHcCCceeEEEee
Q 030025 159 LATEAGFSGIRFVCF 173 (184)
Q Consensus 159 ~l~~aGf~~i~~~~~ 173 (184)
++++ ||++...+..
T Consensus 210 ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 210 LAPQ-GWRVERQWPF 223 (232)
T ss_pred HhhC-CCeEEeccce
Confidence 9999 9997765543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-19 Score=112.64 Aligned_cols=88 Identities=19% Similarity=0.410 Sum_probs=76.3
Q ss_pred EEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCc-cCCCC--CEEEechhhhcCChHHHH
Q 030025 26 VDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQ-SVPNG--DAILIKWILHDWSDEHCL 98 (184)
Q Consensus 26 lDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~-~~~~~--D~i~~~~~l~~~~~~~~~ 98 (184)
||+|||+|..+..++++ +..+++++|. +.+++.+++. .++.++..|+.+ ++++. |+|++.+++||+++. .
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~--~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP--E 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH--H
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCH--H
Confidence 89999999999999998 7889999999 8888888774 456799999998 77754 999999999999544 5
Q ss_pred HHHHHHHhhCCCCcEEEE
Q 030025 99 KLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 99 ~~l~~~~~~L~pgG~l~i 116 (184)
.++++++|+|||||++++
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=131.19 Aligned_cols=155 Identities=11% Similarity=0.097 Sum_probs=114.5
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCccCCCCCEE
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQSVPNGDAI 83 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~~~~~~D~i 83 (184)
-...+++.+. +++..+|||||||+|.++..+++.+ +++++++|+ +.+++.++++ .++++...|+.+..+..|.|
T Consensus 155 k~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~I 232 (383)
T PRK11705 155 KLDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRI 232 (383)
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEE
Confidence 3556778887 8889999999999999999998876 579999999 8899888764 24777777776532233999
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHc
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEA 163 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 163 (184)
++..+++|++.+....+++++.++|||||++++.+...+...... .. +.. ....+++...+..++.+.++ .
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-~~----~i~---~yifp~g~lps~~~i~~~~~-~ 303 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-DP----WIN---KYIFPNGCLPSVRQIAQASE-G 303 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-CC----Cce---eeecCCCcCCCHHHHHHHHH-C
Confidence 999999999877667899999999999999999876544321111 00 111 01134556668888888766 5
Q ss_pred CCceeEEEee
Q 030025 164 GFSGIRFVCF 173 (184)
Q Consensus 164 Gf~~i~~~~~ 173 (184)
||.+.++...
T Consensus 304 ~~~v~d~~~~ 313 (383)
T PRK11705 304 LFVMEDWHNF 313 (383)
T ss_pred CcEEEEEecC
Confidence 8887776544
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=119.43 Aligned_cols=131 Identities=18% Similarity=0.277 Sum_probs=102.0
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCCC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVPN 79 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~~ 79 (184)
.+...+++.+. ..+..+|||+|||+|.++..+++++|+.+++++|. +.+++.++++ ++++++.+|.....+.
T Consensus 18 ~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~ 96 (187)
T PRK08287 18 EVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPG 96 (187)
T ss_pred HHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCc
Confidence 34445566776 77889999999999999999999999899999999 8888887653 4688888887654444
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
. |+|++....+++ ..+++.+.+.|+|||++++..... .+.+++.+
T Consensus 97 ~~D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~~~~~~~ 142 (187)
T PRK08287 97 KADAIFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFILL-----------------------------ENLHSALA 142 (187)
T ss_pred CCCEEEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEecH-----------------------------hhHHHHHH
Confidence 4 999997765543 357999999999999998854321 13567788
Q ss_pred HHHHcCCceeEEEe
Q 030025 159 LATEAGFSGIRFVC 172 (184)
Q Consensus 159 ~l~~aGf~~i~~~~ 172 (184)
++++.||+.++++.
T Consensus 143 ~l~~~g~~~~~~~~ 156 (187)
T PRK08287 143 HLEKCGVSELDCVQ 156 (187)
T ss_pred HHHHCCCCcceEEE
Confidence 99999998776543
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=121.76 Aligned_cols=163 Identities=9% Similarity=0.032 Sum_probs=110.0
Q ss_pred hHHHHHHHhcC-CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCC--CE
Q 030025 8 VLQKILEAYKG-FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNG--DA 82 (184)
Q Consensus 8 ~~~~l~~~~~~-~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~--D~ 82 (184)
+.+.+++.+.. .++..+|||||||||..+..+++.+ ..+++++|. ++|++.|++. ..++++|+.+ ++++. |+
T Consensus 37 wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~ 113 (226)
T PRK05785 37 WRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDV 113 (226)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEE
Confidence 33444444421 1346899999999999999999887 579999999 9999998865 3467888887 77654 99
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHh--------hhhCCC-------
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLV--------MTQYPG------- 147 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~------- 147 (184)
|++.+++||+++++ .++++++|+|||. +++.+...++... .......+. ......
T Consensus 114 v~~~~~l~~~~d~~--~~l~e~~RvLkp~--~~ile~~~p~~~~------~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl 183 (226)
T PRK05785 114 VMSSFALHASDNIE--KVIAEFTRVSRKQ--VGFIAMGKPDNVI------KRKYLSFYLRYIMPYIACLAGAKCRDYKYI 183 (226)
T ss_pred EEecChhhccCCHH--HHHHHHHHHhcCc--eEEEEeCCCCcHH------HHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 99999999998765 7899999999994 4344544433210 001111110 000000
Q ss_pred ----ccccCHHHHHHHHHHcCCceeEEEeec-CceEEEEEeC
Q 030025 148 ----GKERTKHEFTTLATEAGFSGIRFVCFF-HNLWVMEFYK 184 (184)
Q Consensus 148 ----~~~~~~~~~~~~l~~aGf~~i~~~~~~-~~~~~~~~~~ 184 (184)
....+.+++.++++++| ..++.+... +...+..++|
T Consensus 184 ~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 184 YYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 12348899999999984 667777765 4444555544
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=121.90 Aligned_cols=159 Identities=11% Similarity=0.061 Sum_probs=110.8
Q ss_pred hHHHHHHHhcC-CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCC
Q 030025 8 VLQKILEAYKG-FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 8 ~~~~l~~~~~~-~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~ 78 (184)
+...+++.+.. ..+..+|||+|||+|.++..+++. ..+++++|+ +.|++.|+++ .++.+...|+.+...
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 118 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCG 118 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCC
Confidence 44556666652 456789999999999999999886 458999999 8999888764 378999999877333
Q ss_pred CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhh-hhCCCccccCHHHHH
Q 030025 79 NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVM-TQYPGGKERTKHEFT 157 (184)
Q Consensus 79 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 157 (184)
..|+|++..+++|++.++...+++++.+++++++.+.+... .. .............. ........++.+++.
T Consensus 119 ~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
T TIGR02021 119 EFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK---TA----WLAFLKMIGELFPGSSRATSAYLHPMTDLE 191 (219)
T ss_pred CcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC---ch----HHHHHHHHHhhCcCcccccceEEecHHHHH
Confidence 34999999999999877777899999999987765554211 10 00000000000000 001122456899999
Q ss_pred HHHHHcCCceeEEEeecC
Q 030025 158 TLATEAGFSGIRFVCFFH 175 (184)
Q Consensus 158 ~~l~~aGf~~i~~~~~~~ 175 (184)
++++++||+++.......
T Consensus 192 ~~l~~~Gf~v~~~~~~~~ 209 (219)
T TIGR02021 192 RALGELGWKIVREGLVST 209 (219)
T ss_pred HHHHHcCceeeeeecccc
Confidence 999999999998876543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-19 Score=126.93 Aligned_cols=143 Identities=15% Similarity=0.108 Sum_probs=105.6
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CC--ceEEEcccCc-cCC--CCCEEEechhhhc
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PG--VKHVGGDMFQ-SVP--NGDAILIKWILHD 91 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~--i~~~~~d~~~-~~~--~~D~i~~~~~l~~ 91 (184)
+..+|||||||-|.++..|++.. ..++++|. +.+++.|+.+ .. +++.+...++ ... ..|+|+|..+++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 57899999999999999999984 89999999 9999999865 33 4577777766 222 3399999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhh-HhhhhCCC-----ccccCHHHHHHHHHHcCC
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADV-LVMTQYPG-----GKERTKHEFTTLATEAGF 165 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~l~~aGf 165 (184)
+++++ .+++.+.+++||||.++++++...-. .+....... +.+...+. .++.-++++..++.++|+
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~lf~STinrt~k------a~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGILFLSTINRTLK------AYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEeccccCHH------HHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 99987 69999999999999999998874321 011111111 11111111 234578999999999999
Q ss_pred ceeEEEee
Q 030025 166 SGIRFVCF 173 (184)
Q Consensus 166 ~~i~~~~~ 173 (184)
..+.....
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 98876543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=134.59 Aligned_cols=147 Identities=20% Similarity=0.243 Sum_probs=113.6
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc---cC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ---SV 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~---~~ 77 (184)
......+++.++ ..+..+|||||||+|.++..+++.. .+++++|. +.|++.+++. +++.++.+|+.+ ++
T Consensus 23 ~~~~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 23 KEERPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNI 99 (475)
T ss_pred chhhhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCC
Confidence 344567777777 6667899999999999999999874 48899999 8888776532 578999999964 44
Q ss_pred CCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 78 PNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 78 ~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+.. |+|++..++||+++++...++++++++|||||++++.|........... . .....+++...
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~------~--------~~~~~~~~~~~ 165 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR------K--------NNPTHYREPRF 165 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc------c--------CCCCeecChHH
Confidence 433 9999999999999887789999999999999999998875433211000 0 11233457889
Q ss_pred HHHHHHHcCCceeE
Q 030025 156 FTTLATEAGFSGIR 169 (184)
Q Consensus 156 ~~~~l~~aGf~~i~ 169 (184)
|.++|.++||....
T Consensus 166 ~~~~f~~~~~~~~~ 179 (475)
T PLN02336 166 YTKVFKECHTRDED 179 (475)
T ss_pred HHHHHHHheeccCC
Confidence 99999999988763
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=119.62 Aligned_cols=104 Identities=15% Similarity=0.353 Sum_probs=90.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCccCCCC--CEEEechhhhcCCh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQSVPNG--DAILIKWILHDWSD 94 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~~~~~~--D~i~~~~~l~~~~~ 94 (184)
.++..+|||||||+|..+..+++..+..+++++|+ +.|++.|+++ +++.+..+|+.++++.. |+|++..+++|+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 45678999999999999999999888899999999 9999999874 78899999988765543 99999999999987
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 95 EHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 95 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
++..++++++.+++ ++.+++.+...++.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~~ 148 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYNPSP 148 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeCCCc
Confidence 77789999999997 67899988876553
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-16 Score=117.22 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=95.9
Q ss_pred HhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhh----hCCCCCCceEEEcccCcc-----CCCC-CEE
Q 030025 15 AYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQ----HSPEYPGVKHVGGDMFQS-----VPNG-DAI 83 (184)
Q Consensus 15 ~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~----~a~~~~~i~~~~~d~~~~-----~~~~-D~i 83 (184)
.++ +.+..+|||+|||+|.++..+++..+..+++++|. +.|++ .+++.+|+.++.+|...+ ++.. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 466 78899999999999999999999876679999999 76666 445557899999998752 2233 888
Q ss_pred EechhhhcCChH-HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHH
Q 030025 84 LIKWILHDWSDE-HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATE 162 (184)
Q Consensus 84 ~~~~~l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (184)
++. ++++ ....+++++++.|||||+++++-+..+-+.. . ... +..++..+++++
T Consensus 146 ~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~------------------~-~~~-~~~~~~~~~l~~ 200 (226)
T PRK04266 146 YQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVT------------------K-DPK-EIFKEEIRKLEE 200 (226)
T ss_pred EEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCc------------------C-CHH-HHHHHHHHHHHH
Confidence 753 3333 2235789999999999999995222110000 0 000 112445699999
Q ss_pred cCCceeEEEeecC
Q 030025 163 AGFSGIRFVCFFH 175 (184)
Q Consensus 163 aGf~~i~~~~~~~ 175 (184)
+||+.++.....+
T Consensus 201 aGF~~i~~~~l~p 213 (226)
T PRK04266 201 GGFEILEVVDLEP 213 (226)
T ss_pred cCCeEEEEEcCCC
Confidence 9999999887653
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.8e-19 Score=113.11 Aligned_cols=87 Identities=23% Similarity=0.414 Sum_probs=59.3
Q ss_pred EEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CC---ceEEEcccCccCC--CCCEEEechhhhcCC
Q 030025 26 VDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PG---VKHVGGDMFQSVP--NGDAILIKWILHDWS 93 (184)
Q Consensus 26 lDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~---i~~~~~d~~~~~~--~~D~i~~~~~l~~~~ 93 (184)
||||||+|..+..+++.+|..+++++|+ +.|++.++++ .+ +.+...|..+..+ ..|+|++.+++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 9999888876 22 2333333333222 339999999999995
Q ss_pred hHHHHHHHHHHHhhCCCCcEE
Q 030025 94 DEHCLKLLKNCHKSIPEGGKV 114 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l 114 (184)
+. ..+++++++.|+|||+|
T Consensus 81 ~~--~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DI--EAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -H--HHHHHHHTTT-TSS-EE
T ss_pred hH--HHHHHHHHHHcCCCCCC
Confidence 44 48999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-17 Score=123.08 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=104.6
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCCC-C
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPNG-D 81 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~~-D 81 (184)
+.++..+. ..+.++|||+|||+|..+..+++. +.+++++|. +.+++.+++. .++++...|+.. .++.. |
T Consensus 110 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD 186 (287)
T PRK12335 110 SEVLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYD 186 (287)
T ss_pred HHHHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCcc
Confidence 34555555 445679999999999999999886 579999999 8888877553 367888888876 44444 9
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHH
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLAT 161 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (184)
+|++..++||+++++...+++++.+.|+|||++++...........+ .+....++.+++.++++
T Consensus 187 ~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~ 250 (287)
T PRK12335 187 FILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------MPFSFTFKEGELKDYYQ 250 (287)
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------CCCCcccCHHHHHHHhC
Confidence 99999999999877778999999999999999877554332211000 01122457899999997
Q ss_pred HcCCceeEEE
Q 030025 162 EAGFSGIRFV 171 (184)
Q Consensus 162 ~aGf~~i~~~ 171 (184)
+|++++..
T Consensus 251 --~~~i~~~~ 258 (287)
T PRK12335 251 --DWEIVKYN 258 (287)
T ss_pred --CCEEEEEe
Confidence 48888764
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=113.55 Aligned_cols=141 Identities=18% Similarity=0.174 Sum_probs=105.4
Q ss_pred HHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCCCC-CEEE
Q 030025 12 ILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVPNG-DAIL 84 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~~~-D~i~ 84 (184)
+.+.+. ..+..+|||+|||+|.++..+++..+ +++++|+ +.+++.++++ .+++++.+|..+..+.. |+|+
T Consensus 11 l~~~l~-~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi 87 (179)
T TIGR00537 11 LEANLR-ELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVIL 87 (179)
T ss_pred HHHHHH-hcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEE
Confidence 344444 44567899999999999999999865 8999999 9998887764 35788889987633334 9999
Q ss_pred echhhhcCChHH-------------------HHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhC
Q 030025 85 IKWILHDWSDEH-------------------CLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQY 145 (184)
Q Consensus 85 ~~~~l~~~~~~~-------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
++..+++.+++. ...+++++.++|+|||++++.+....
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------------- 144 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------------- 144 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------
Confidence 998887765321 24689999999999999999764221
Q ss_pred CCccccCHHHHHHHHHHcCCceeEEEeecCceEEEEEeC
Q 030025 146 PGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 146 ~~~~~~~~~~~~~~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
...++.+.+++.||+...+....-.+--+.++|
T Consensus 145 ------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 145 ------GEPDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred ------ChHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 256778899999999887776654544444443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=112.63 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=117.9
Q ss_pred CCCC-eEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhC----C--CCCCc-eEEEcccCc---cCC-------CC
Q 030025 20 EHIK-QLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHS----P--EYPGV-KHVGGDMFQ---SVP-------NG 80 (184)
Q Consensus 20 ~~~~-~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a----~--~~~~i-~~~~~d~~~---~~~-------~~ 80 (184)
+... +|||||||||..+..+++.+|+++..-.|. +..+..- . ..+|+ ..+..|+.+ +++ ..
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 3444 599999999999999999999999988886 4332111 1 12333 345666665 222 13
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+|++.+++|..+......+|+.+.++|+|||.|++..+...+....... ...++.......+....++.+++.++
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S---N~~FD~sLr~rdp~~GiRD~e~v~~l 179 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES---NAAFDASLRSRDPEWGIRDIEDVEAL 179 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH---HHHHHHHHhcCCCCcCccCHHHHHHH
Confidence 99999999999999999999999999999999999999887665332221 12333333333345567899999999
Q ss_pred HHHcCCceeEEEeecCceEEEEEeC
Q 030025 160 ATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 160 l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
.+++||+.++.+..+.+--++.+.|
T Consensus 180 A~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 180 AAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHCCCccCcccccCCCCeEEEEeC
Confidence 9999999999998885555555544
|
The function of this family is unknown. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=122.37 Aligned_cols=101 Identities=18% Similarity=0.271 Sum_probs=82.7
Q ss_pred CCCCCeEEEecCCcCh----HHHHHHhhCC-----CCeEEEeec-hhHhhhCCCC-------------------------
Q 030025 19 FEHIKQLVDVGGSLGN----TLKAITSKYP-----HIKGINFDL-PHVIQHSPEY------------------------- 63 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~----~~~~l~~~~~-----~~~~~~~D~-~~~~~~a~~~------------------------- 63 (184)
..+..+|+|+|||||. ++..+++..+ +.+++++|+ +.|++.|++.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 4456799999999996 4445555543 579999999 9999988763
Q ss_pred --------CCceEEEcccCc-cCCC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 64 --------PGVKHVGGDMFQ-SVPN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 64 --------~~i~~~~~d~~~-~~~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.++.|.+.|+.+ +.+. . |+|+|.++++|+++++..++++++++.|+|||+|++...
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 268999999988 4333 3 999999999999988878999999999999999999653
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-18 Score=110.15 Aligned_cols=88 Identities=24% Similarity=0.452 Sum_probs=74.7
Q ss_pred EEEecCCcChHHHHHHhhC---CCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCC--CCEEEe-chhhhc
Q 030025 25 LVDVGGSLGNTLKAITSKY---PHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPN--GDAILI-KWILHD 91 (184)
Q Consensus 25 ilDiG~G~G~~~~~l~~~~---~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~--~D~i~~-~~~l~~ 91 (184)
|||+|||+|..+..+++.+ |..+++++|+ +.|++.++++ .+++++++|+.+ +... .|+|++ ..+++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999986 5589999999 9999988764 589999999988 5433 399999 456999
Q ss_pred CChHHHHHHHHHHHhhCCCCc
Q 030025 92 WSDEHCLKLLKNCHKSIPEGG 112 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG 112 (184)
+++++...+++++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.73 E-value=8e-17 Score=119.87 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=103.5
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhh---CCCC----CCceEEEcccCc-cCCCC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQH---SPEY----PGVKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~---a~~~----~~i~~~~~d~~~-~~~~~ 80 (184)
+.+..+++ -=.+++|||||||.|+++..|+.+.+ ..++|+|. +..... +++. ..+.....-+++ +..+.
T Consensus 105 ~rl~p~l~-~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 105 DRLLPHLP-DLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred HHHHhhhC-CcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 45666765 33678999999999999999999865 37999996 322211 1111 223333233333 33333
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccc--cchhhhhhHhhhhCCCccccCHHHHH
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHS--KINSLADVLVMTQYPGGKERTKHEFT 157 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
|+|+|.+|++|..+| ...|++++..|+|||.|++-+...+........+ +...+-+. ....|...+.
T Consensus 183 FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv--------~FiPs~~~L~ 252 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNV--------WFIPSVAALK 252 (315)
T ss_pred cCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCce--------EEeCCHHHHH
Confidence 999999999999877 4789999999999999999888776643221111 11111110 1124899999
Q ss_pred HHHHHcCCceeEEEee
Q 030025 158 TLATEAGFSGIRFVCF 173 (184)
Q Consensus 158 ~~l~~aGf~~i~~~~~ 173 (184)
.|++++||+.+++...
T Consensus 253 ~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 253 NWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHcCCceEEEecC
Confidence 9999999999998754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=122.41 Aligned_cols=106 Identities=15% Similarity=0.272 Sum_probs=83.0
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-----CC--ceEEEcccCc--cC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-----PG--VKHVGGDMFQ--SV 77 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-----~~--i~~~~~d~~~--~~ 77 (184)
+..|++.++ +..+|||+|||+|..+..+++..+ ..+++++|+ +.|++.++++ ++ +.++++|+.+ ++
T Consensus 54 ~~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~ 130 (301)
T TIGR03438 54 ADEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL 130 (301)
T ss_pred HHHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh
Confidence 444555443 557899999999999999999876 589999999 8898777553 44 5668999976 22
Q ss_pred CC-----C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 78 PN-----G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 78 ~~-----~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+. . .++++.++++++++++...+|+++++.|+|||.+++.
T Consensus 131 ~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 131 PPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred hcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 21 1 3445567899999888899999999999999999973
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-17 Score=117.43 Aligned_cols=145 Identities=21% Similarity=0.285 Sum_probs=107.1
Q ss_pred eEEEecCCcChHHHHHHhhCCC--CeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-----cCCCC--CEEEechh
Q 030025 24 QLVDVGGSLGNTLKAITSKYPH--IKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-----SVPNG--DAILIKWI 88 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~~~--~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-----~~~~~--D~i~~~~~ 88 (184)
+|||||||.|.+...+++..++ ..+.++|. |.+++..+++ .++.....|+.. +.+.+ |.|++.++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999999999999877 89999999 8999888775 356666677764 22333 99999999
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCc--cccCHHHHHHHHHHcCCc
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGG--KERTKHEFTTLATEAGFS 166 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~aGf~ 166 (184)
|..++++....++++++++|||||.|++-|...-+.....-... ...+........+. .+++.+++.++|++|||.
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~--~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~ 231 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKG--QCISENFYVRGDGTRAYFFTEEELDELFTKAGFE 231 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCC--ceeecceEEccCCceeeeccHHHHHHHHHhcccc
Confidence 99999998899999999999999999998865433210000000 01111111111223 356999999999999999
Q ss_pred eeEE
Q 030025 167 GIRF 170 (184)
Q Consensus 167 ~i~~ 170 (184)
.++.
T Consensus 232 ~~~~ 235 (264)
T KOG2361|consen 232 EVQL 235 (264)
T ss_pred hhcc
Confidence 8764
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-16 Score=116.54 Aligned_cols=157 Identities=12% Similarity=0.123 Sum_probs=104.8
Q ss_pred HHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCC
Q 030025 9 LQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 9 ~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~ 78 (184)
.+.+++.++. ..+..+|||||||+|.++..+++.. ..++++|. +.|++.|+++ .++.+..+|+....+
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 126 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLG 126 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccC
Confidence 3445555542 3567899999999999999999874 56999999 8898888764 368899998543322
Q ss_pred CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHh-hhhCCCccccCHHHHH
Q 030025 79 NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLV-MTQYPGGKERTKHEFT 157 (184)
Q Consensus 79 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 157 (184)
..|+|++..++||+++++...+++++.+.+++++.+.+ ....+. ............ ..........+..+|.
T Consensus 127 ~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 199 (230)
T PRK07580 127 RFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF-APYTPL------LALLHWIGGLFPGPSRTTRIYPHREKGIR 199 (230)
T ss_pred CcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE-CCccHH------HHHHHHhccccCCccCCCCccccCHHHHH
Confidence 34999999999999988888999999998754443332 111000 000000000000 0001123356889999
Q ss_pred HHHHHcCCceeEEEeec
Q 030025 158 TLATEAGFSGIRFVCFF 174 (184)
Q Consensus 158 ~~l~~aGf~~i~~~~~~ 174 (184)
++++++||+..+.....
T Consensus 200 ~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 200 RALAAAGFKVVRTERIS 216 (230)
T ss_pred HHHHHCCCceEeeeecc
Confidence 99999999998877653
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-17 Score=114.10 Aligned_cols=146 Identities=20% Similarity=0.198 Sum_probs=104.5
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCce-EEEcccCc-c-CCCC--CEEEech
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVK-HVGGDMFQ-S-VPNG--DAILIKW 87 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~-~~~~d~~~-~-~~~~--D~i~~~~ 87 (184)
.....|||||||||..-.. ....|.++++++|. +.|-+.+.+. .++. |+.++.++ + ++++ |+|++..
T Consensus 75 ~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 3456789999999988753 33347899999998 8888776553 5666 99999988 4 5554 9999999
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhH--hhhh-CCCccccCHHHHHHHHHHcC
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVL--VMTQ-YPGGKERTKHEFTTLATEAG 164 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~aG 164 (184)
+++...++ .+.|+++.|+|+|||++++.|+........ ..+.+.. ..++ ...|-..+.+.+ +.|++|-
T Consensus 154 vLCSve~~--~k~L~e~~rlLRpgG~iifiEHva~~y~~~------n~i~q~v~ep~~~~~~dGC~ltrd~~-e~Leda~ 224 (252)
T KOG4300|consen 154 VLCSVEDP--VKQLNEVRRLLRPGGRIIFIEHVAGEYGFW------NRILQQVAEPLWHLESDGCVLTRDTG-ELLEDAE 224 (252)
T ss_pred EEeccCCH--HHHHHHHHHhcCCCcEEEEEecccccchHH------HHHHHHHhchhhheeccceEEehhHH-HHhhhcc
Confidence 99987766 488999999999999999999876543221 1111111 1111 123444566555 6779999
Q ss_pred CceeEEEeecC
Q 030025 165 FSGIRFVCFFH 175 (184)
Q Consensus 165 f~~i~~~~~~~ 175 (184)
|+.++.++...
T Consensus 225 f~~~~~kr~~~ 235 (252)
T KOG4300|consen 225 FSIDSCKRFNF 235 (252)
T ss_pred cccchhhcccC
Confidence 99998877653
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=108.33 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=91.8
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCCC-CEEEechhh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPNG-DAILIKWIL 89 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~~-D~i~~~~~l 89 (184)
+++..+|||+|||+|..+..++...+..+++++|. +.|++.++++ ++++++.+|+.+ +.... |+|++...
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-
Confidence 45578999999999999999999889999999999 8899888763 469999999987 33323 99998652
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
.+. ..+++.+++.|+|||++++..... ...++.++.++.|+...+
T Consensus 122 ---~~~--~~~l~~~~~~LkpGG~lv~~~~~~------------------------------~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 122 ---ASL--SDLVELCLPLLKPGGRFLALKGRD------------------------------PEEEIAELPKALGGKVEE 166 (187)
T ss_pred ---cCH--HHHHHHHHHhcCCCeEEEEEeCCC------------------------------hHHHHHHHHHhcCceEee
Confidence 222 368999999999999999864211 245566677777988666
Q ss_pred EEe
Q 030025 170 FVC 172 (184)
Q Consensus 170 ~~~ 172 (184)
.+.
T Consensus 167 ~~~ 169 (187)
T PRK00107 167 VIE 169 (187)
T ss_pred eEE
Confidence 554
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-16 Score=111.29 Aligned_cols=91 Identities=19% Similarity=0.169 Sum_probs=73.6
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCC-CCEEEechhhhc
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPN-GDAILIKWILHD 91 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~-~D~i~~~~~l~~ 91 (184)
++.+|||+|||+|..+..++...+..+++++|. +.|++.+++. ++++++.+|+.+ .... .|+|++.. +++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS 120 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence 378999999999999999998888899999999 7777766542 579999999987 3222 39999876 443
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+ ..+++.++++|+|||.+++.
T Consensus 121 ~-----~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 121 L-----NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred H-----HHHHHHHHHhcCCCCEEEEE
Confidence 3 25788999999999999985
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-16 Score=116.26 Aligned_cols=157 Identities=15% Similarity=0.037 Sum_probs=104.1
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-c--CCCC-
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-S--VPNG- 80 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~--~~~~- 80 (184)
.+..... ..+..+|||||||+|.++..+++. ..+++++|. +.+++.++++ .++.+...|+.+ + .+..
T Consensus 39 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 115 (233)
T PRK05134 39 YIREHAG-GLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQF 115 (233)
T ss_pred HHHHhcc-CCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCc
Confidence 3444443 456789999999999999988876 468999999 7888777643 346777777765 2 2233
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLA 160 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (184)
|+|++..+++|.++.. .+++.+.+.|+|||.+++..+................................+.++|.+++
T Consensus 116 D~Ii~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (233)
T PRK05134 116 DVVTCMEMLEHVPDPA--SFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWL 193 (233)
T ss_pred cEEEEhhHhhccCCHH--HHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHH
Confidence 9999999999988764 68999999999999999876532110000000000000000000000113356899999999
Q ss_pred HHcCCceeEEEe
Q 030025 161 TEAGFSGIRFVC 172 (184)
Q Consensus 161 ~~aGf~~i~~~~ 172 (184)
+++||+.++...
T Consensus 194 ~~~Gf~~v~~~~ 205 (233)
T PRK05134 194 RQAGLEVQDITG 205 (233)
T ss_pred HHCCCeEeeeee
Confidence 999999997754
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=128.70 Aligned_cols=104 Identities=23% Similarity=0.342 Sum_probs=87.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-c--CCCC--CEEEech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-S--VPNG--DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~--~~~~--D~i~~~~ 87 (184)
+.+..+|||+|||+|..+..+++.+|+.+++++|+ +.|++.|+++ .++.++++|+.+ + ++.. |+|+++.
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEch
Confidence 55678999999999999999999999999999999 8899888653 357788899876 3 4433 9999999
Q ss_pred hhhcCC-----------hHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 88 ILHDWS-----------DEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 88 ~l~~~~-----------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
++|++. .++...++++++++|||||.+++.|...+
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 999762 34567899999999999999999986544
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8e-16 Score=119.77 Aligned_cols=109 Identities=16% Similarity=0.224 Sum_probs=89.1
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---------CCceEEEcccCccCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---------~~i~~~~~d~~~~~~ 78 (184)
.+.+++.++ ....++|||+|||+|.++..+++++|..+++++|. +.+++.+++. .++++...|..+..+
T Consensus 217 trllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 217 ARFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 456788887 55557999999999999999999999999999999 7888888753 257888899877443
Q ss_pred C-C-CEEEechhhhc---CChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 79 N-G-DAILIKWILHD---WSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 79 ~-~-D~i~~~~~l~~---~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. . |+|+|+-.+|. +.+....++|+.+++.|+|||.+++.-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 3 99999877764 344555689999999999999999964
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-15 Score=108.44 Aligned_cols=140 Identities=11% Similarity=0.027 Sum_probs=102.8
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC------------------CCCceEEE
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE------------------YPGVKHVG 70 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~ 70 (184)
...++.+. .++.++|||+|||.|..+..|+++ +..++++|+ +.+++.+.+ ..++++.+
T Consensus 24 ~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 100 (213)
T TIGR03840 24 VKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFC 100 (213)
T ss_pred HHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEE
Confidence 33444444 456789999999999999999986 679999999 887776411 14688999
Q ss_pred cccCc-cC---CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCC
Q 030025 71 GDMFQ-SV---PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYP 146 (184)
Q Consensus 71 ~d~~~-~~---~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
+|+++ +. +..|.|+-..+++|++++.....++.+.++|||||++++.....+..... .
T Consensus 101 ~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-----------------g- 162 (213)
T TIGR03840 101 GDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-----------------G- 162 (213)
T ss_pred ccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-----------------C-
Confidence 99987 32 22399999999999998888899999999999999988876654322100 0
Q ss_pred CccccCHHHHHHHHHHcCCceeEEE
Q 030025 147 GGKERTKHEFTTLATEAGFSGIRFV 171 (184)
Q Consensus 147 ~~~~~~~~~~~~~l~~aGf~~i~~~ 171 (184)
.....+.+++.++|.. +|.+..+.
T Consensus 163 pp~~~~~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 163 PPFSVSPAEVEALYGG-HYEIELLE 186 (213)
T ss_pred cCCCCCHHHHHHHhcC-CceEEEEe
Confidence 1123588999998864 45544443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.6e-16 Score=117.54 Aligned_cols=156 Identities=11% Similarity=0.022 Sum_probs=101.8
Q ss_pred HhHHHHHHHhcCC--CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----------CCceEEEcc
Q 030025 7 LVLQKILEAYKGF--EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----------PGVKHVGGD 72 (184)
Q Consensus 7 ~~~~~l~~~~~~~--~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------~~i~~~~~d 72 (184)
.+++.+++.+... .+..+|||+|||+|.++..+++. +.+++++|+ +.|++.++++ .++.|...|
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D 205 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence 3445666666511 24679999999999999999986 568999999 8899887664 246788888
Q ss_pred cCccCCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhh-HhhhhCCC----
Q 030025 73 MFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADV-LVMTQYPG---- 147 (184)
Q Consensus 73 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---- 147 (184)
+.+.....|+|++..+++|++++....+++.+.++ .+||. ++.. .+.. ........ ......+.
T Consensus 206 l~~l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~--~p~~-------~~~~~l~~~g~~~~g~~~~~r 274 (315)
T PLN02585 206 LESLSGKYDTVTCLDVLIHYPQDKADGMIAHLASL-AEKRL-IISF--APKT-------LYYDILKRIGELFPGPSKATR 274 (315)
T ss_pred hhhcCCCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cCCEE-EEEe--CCcc-------hHHHHHHHHHhhcCCCCcCce
Confidence 75432233999999999999887666788888764 45554 4422 1111 00000000 00000000
Q ss_pred ccccCHHHHHHHHHHcCCceeEEEeecC
Q 030025 148 GKERTKHEFTTLATEAGFSGIRFVCFFH 175 (184)
Q Consensus 148 ~~~~~~~~~~~~l~~aGf~~i~~~~~~~ 175 (184)
...++.+++.++++++||++.+......
T Consensus 275 ~y~~s~eel~~lL~~AGf~v~~~~~~~~ 302 (315)
T PLN02585 275 AYLHAEADVERALKKAGWKVARREMTAT 302 (315)
T ss_pred eeeCCHHHHHHHHHHCCCEEEEEEEeec
Confidence 1134799999999999999886654443
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=112.11 Aligned_cols=136 Identities=18% Similarity=0.268 Sum_probs=100.5
Q ss_pred HHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCccCCCC--CEEEec
Q 030025 14 EAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQSVPNG--DAILIK 86 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~~~~~~--D~i~~~ 86 (184)
..++ -++..+++|+|||.|.++..|+.++ -+++++|. +.+++.|+++ ++|++++.|+.+.+|.. |+|+++
T Consensus 37 aaLp-~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 37 AALP-RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHHT-TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred HhcC-ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 3577 7788999999999999999999996 48899999 8888888764 89999999998855554 999999
Q ss_pred hhhhcCCh-HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCC
Q 030025 87 WILHDWSD-EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGF 165 (184)
Q Consensus 87 ~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 165 (184)
.++|++.+ ++...+++++.+.|+|||.|++....- ..... -++....+.+.++|++. |
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd---------------~~c~~-----wgh~~ga~tv~~~~~~~-~ 172 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD---------------ANCRR-----WGHAAGAETVLEMLQEH-L 172 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H---------------HHHHH-----TT-S--HHHHHHHHHHH-S
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC---------------Ccccc-----cCcccchHHHHHHHHHH-h
Confidence 99999985 567789999999999999999977521 01111 23445788889998875 5
Q ss_pred ceeEEEee
Q 030025 166 SGIRFVCF 173 (184)
Q Consensus 166 ~~i~~~~~ 173 (184)
..++...+
T Consensus 173 ~~~~~~~~ 180 (201)
T PF05401_consen 173 TEVERVEC 180 (201)
T ss_dssp EEEEEEEE
T ss_pred hheeEEEE
Confidence 55555444
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-14 Score=107.86 Aligned_cols=146 Identities=12% Similarity=0.115 Sum_probs=100.5
Q ss_pred ccHHhHHHHHH---HhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hh----HhhhCCCCCCceEEEcccC
Q 030025 4 HTTLVLQKILE---AYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PH----VIQHSPEYPGVKHVGGDMF 74 (184)
Q Consensus 4 ~~~~~~~~l~~---~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~----~~~~a~~~~~i~~~~~d~~ 74 (184)
+-+.++..|+. .++ +++..+|||+|||+|.++..+++.. +.-+++++|+ +. +++.+++++|+.++..|+.
T Consensus 113 ~rSKlaa~i~~g~~~l~-IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~ 191 (293)
T PTZ00146 113 FRSKLAAAIIGGVANIP-IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDAR 191 (293)
T ss_pred cccHHHHHHHCCcceec-cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 34455555644 334 6788999999999999999999985 4568999998 53 6677777789999999986
Q ss_pred cc------CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCc
Q 030025 75 QS------VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGG 148 (184)
Q Consensus 75 ~~------~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
.+ .+..|+|++..+ + ++ +...++.++.+.|||||.++|.......... + +..
T Consensus 192 ~p~~y~~~~~~vDvV~~Dva-~--pd-q~~il~~na~r~LKpGG~~vI~ika~~id~g-~-----------------~pe 249 (293)
T PTZ00146 192 YPQKYRMLVPMVDVIFADVA-Q--PD-QARIVALNAQYFLKNGGHFIISIKANCIDST-A-----------------KPE 249 (293)
T ss_pred ChhhhhcccCCCCEEEEeCC-C--cc-hHHHHHHHHHHhccCCCEEEEEEeccccccC-C-----------------CHH
Confidence 53 122399988764 1 22 3345677899999999999994322111100 0 000
Q ss_pred cccCHHHHHHHHHHcCCceeEEEeec
Q 030025 149 KERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 149 ~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
..+. +++ ++|+++||+.++.+.+.
T Consensus 250 ~~f~-~ev-~~L~~~GF~~~e~v~L~ 273 (293)
T PTZ00146 250 VVFA-SEV-QKLKKEGLKPKEQLTLE 273 (293)
T ss_pred HHHH-HHH-HHHHHcCCceEEEEecC
Confidence 1112 444 88999999999888764
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=100.82 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=85.1
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc---
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ--- 75 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~--- 75 (184)
..+...+++.+. ..+..+|||+|||+|..+..++++.|..+++++|. +.+++.+++. +++.++..|+..
T Consensus 5 ~~~~~~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 5 REVRALTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE 83 (124)
T ss_pred HHHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh
Confidence 445666788887 77788999999999999999999988899999999 8888877642 578888888764
Q ss_pred cCCCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 76 SVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 76 ~~~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
..+.. |+|++....++ ...+++++++.|+|||++++.
T Consensus 84 ~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 84 DSLPEPDRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hhcCCCCEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEE
Confidence 12233 99998765543 237899999999999999985
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.2e-15 Score=113.33 Aligned_cols=110 Identities=18% Similarity=0.257 Sum_probs=87.7
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCCCC-C
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVPNG-D 81 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~~~-D 81 (184)
...+++.++ ....++|||+|||+|.++..+++++|..+++++|+ +.+++.+++. ...+++..|..+..+.. |
T Consensus 185 t~lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fD 263 (342)
T PRK09489 185 SQLLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFD 263 (342)
T ss_pred HHHHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCcc
Confidence 356677776 44557899999999999999999999999999999 8899888753 23567777877644444 9
Q ss_pred EEEechhhhcC---ChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 82 AILIKWILHDW---SDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 82 ~i~~~~~l~~~---~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+|+++..+|+. .......+++++.+.|+|||.|++.-.
T Consensus 264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 99999998863 234556899999999999999998654
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=108.07 Aligned_cols=142 Identities=14% Similarity=0.163 Sum_probs=98.4
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCCC-
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPNG- 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~~- 80 (184)
...++++++ .-+.+++||+|||.|..+..|+++ +..|+++|. +..++.+++. -.++....|+.+ .++..
T Consensus 19 hs~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 19 HSEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp -HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred cHHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 455677777 667899999999999999999998 678999998 6666654332 348889999987 55555
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLA 160 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (184)
|+|++..++++++.+....+++++.+.++|||++++......... ... . +....+.+.++.+.+
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~-p~~-------~--------~~~f~~~~~EL~~~y 159 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDY-PCP-------S--------PFPFLLKPGELREYY 159 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS---S-------S----------S--B-TTHHHHHT
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCC-CCC-------C--------CCCcccCHHHHHHHh
Confidence 999999999999988878999999999999999998665432211 000 0 011224678888888
Q ss_pred HHcCCceeEEE
Q 030025 161 TEAGFSGIRFV 171 (184)
Q Consensus 161 ~~aGf~~i~~~ 171 (184)
. |+++++..
T Consensus 160 ~--dW~il~y~ 168 (192)
T PF03848_consen 160 A--DWEILKYN 168 (192)
T ss_dssp T--TSEEEEEE
T ss_pred C--CCeEEEEE
Confidence 7 68877653
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-15 Score=110.91 Aligned_cols=143 Identities=12% Similarity=0.080 Sum_probs=100.8
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----C-CceEEEcccCc-cCC--CC-CEEEechhh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----P-GVKHVGGDMFQ-SVP--NG-DAILIKWIL 89 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~-~i~~~~~d~~~-~~~--~~-D~i~~~~~l 89 (184)
...+|||+|||+|.++..+++.. .+++++|. +.+++.++++ . ++.+...|+.+ +.. .. |+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 47799999999999999888764 46999999 7888777653 2 58888888875 322 33 999999999
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhh--hHhhh----hCCCccccCHHHHHHHHHHc
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLAD--VLVMT----QYPGGKERTKHEFTTLATEA 163 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~l~~a 163 (184)
+|+.+++ .+++++.+.|+|||.+++.+....... ....... ..... ........+..++.++++++
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKPGGILFFSTINRTPKS------YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCCCcEEEEEecCCCchH------HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 9998765 789999999999999998765322100 0000000 00000 00012345889999999999
Q ss_pred CCceeEEEee
Q 030025 164 GFSGIRFVCF 173 (184)
Q Consensus 164 Gf~~i~~~~~ 173 (184)
||+.++....
T Consensus 195 G~~i~~~~~~ 204 (224)
T TIGR01983 195 GLRVKDVKGL 204 (224)
T ss_pred CCeeeeeeeE
Confidence 9999887643
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.7e-15 Score=110.02 Aligned_cols=137 Identities=17% Similarity=0.254 Sum_probs=101.5
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~ 78 (184)
..+...+++.+. ....+|||+|||+|..+..+++.++..+++++|. +.+++.+++. +++.++.+|+.+.++
T Consensus 74 ~~l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~ 151 (251)
T TIGR03534 74 EELVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP 151 (251)
T ss_pred HHHHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc
Confidence 345556666654 3456999999999999999999999999999999 8888887653 468999999987554
Q ss_pred C-C-CEEEechhhh------cCChH------------------HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcccc
Q 030025 79 N-G-DAILIKWILH------DWSDE------------------HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK 132 (184)
Q Consensus 79 ~-~-D~i~~~~~l~------~~~~~------------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 132 (184)
. . |+|+++-.++ .+... ....+++++.+.|+|||++++...
T Consensus 152 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~------------- 218 (251)
T TIGR03534 152 GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG------------- 218 (251)
T ss_pred CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-------------
Confidence 3 3 9999854322 12111 113678999999999999988320
Q ss_pred chhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 133 INSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
....+++.++++++||+.++++.-.
T Consensus 219 -----------------~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 219 -----------------YDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred -----------------ccHHHHHHHHHHhCCCCceEEEeCC
Confidence 0135678899999999988877643
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-15 Score=110.51 Aligned_cols=98 Identities=14% Similarity=0.179 Sum_probs=77.4
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEccc-Cc-c--CCC-C-CEEEech
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDM-FQ-S--VPN-G-DAILIKW 87 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~-~~-~--~~~-~-D~i~~~~ 87 (184)
+..+|||+|||+|..+..+++.+|..+++++|. +.+++.+++. +++.++++|+ .. + ++. . |+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 568999999999999999999999899999999 8899877652 5799999998 43 3 433 3 9998876
Q ss_pred hhhcCCh------HHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 88 ILHDWSD------EHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 88 ~l~~~~~------~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
...+... .....+++++.+.|||||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 5432211 012468999999999999999955
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=107.73 Aligned_cols=150 Identities=19% Similarity=0.260 Sum_probs=103.8
Q ss_pred HHHHHHhcC-----CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CC-ceEEEcccCc--
Q 030025 10 QKILEAYKG-----FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PG-VKHVGGDMFQ-- 75 (184)
Q Consensus 10 ~~l~~~~~~-----~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~-i~~~~~d~~~-- 75 (184)
+.++..+.. ..+..+.||.|+|.|..++.++... --++-.+|. +.+++.|+++ ++ .++.+.-+.+
T Consensus 39 ~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~ 117 (218)
T PF05891_consen 39 RNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT 117 (218)
T ss_dssp HHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--
T ss_pred HHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc
Confidence 445555542 1256899999999999999887654 237777887 8888888742 23 3555555555
Q ss_pred cCCC-CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHH
Q 030025 76 SVPN-GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKH 154 (184)
Q Consensus 76 ~~~~-~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
|.+. +|+|++-+++.|+.|++..++|+++++.|+|+|.+++-|....+.. ..++. ..++--|+.+
T Consensus 118 P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~-----~DsSvTRs~~ 183 (218)
T PF05891_consen 118 PEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE-----EDSSVTRSDE 183 (218)
T ss_dssp --TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET-----TTTEEEEEHH
T ss_pred CCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC-----ccCeeecCHH
Confidence 3322 3999999999999999999999999999999999999998876531 01111 1234457899
Q ss_pred HHHHHHHHcCCceeEEEeec
Q 030025 155 EFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 155 ~~~~~l~~aGf~~i~~~~~~ 174 (184)
.+.++|++||+++++...-.
T Consensus 184 ~~~~lF~~AGl~~v~~~~Q~ 203 (218)
T PF05891_consen 184 HFRELFKQAGLRLVKEEKQK 203 (218)
T ss_dssp HHHHHHHHCT-EEEEEEE-T
T ss_pred HHHHHHHHcCCEEEEecccc
Confidence 99999999999999876543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-15 Score=112.12 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=82.8
Q ss_pred HHHHhcCCCCCCeEEEecCCcChHHHHHH--hhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCccC---
Q 030025 12 ILEAYKGFEHIKQLVDVGGSLGNTLKAIT--SKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQSV--- 77 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G~G~~~~~l~--~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~~~--- 77 (184)
++..+. ..++++|+|||||.|.++..++ ..+|+.+++++|. +.+++.|++. ++++|..+|+.+..
T Consensus 115 ~L~~~~-~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l 193 (296)
T PLN03075 115 LLSQHV-NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESL 193 (296)
T ss_pred HHHHhh-cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccccc
Confidence 344444 4478999999999875544433 4579999999999 8888888763 56999999998732
Q ss_pred CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 78 PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 78 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
...|+|++. +++++..++..++++++.+.|+|||.+++-.
T Consensus 194 ~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 194 KEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 233999999 9999965666799999999999999999954
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-14 Score=102.12 Aligned_cols=154 Identities=15% Similarity=0.196 Sum_probs=98.6
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc---cCCC-C-CEE
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ---SVPN-G-DAI 83 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~~-~-D~i 83 (184)
+.+.+.+ ++..+|||+|||+|.++..+++.. ...++++|. +.+++.+++ .+++++.+|+.+ +++. . |+|
T Consensus 5 ~~i~~~i---~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 5 ESILNLI---PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred HHHHHhc---CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEE
Confidence 3444443 356799999999999999887764 567899999 888887754 468888888865 2333 3 999
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCc-c-ccchhhhh-h-HhhhhCCCccccCHHHHHHH
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGT-H-SKINSLAD-V-LVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 159 (184)
+++.++||+++++ .+++++.+.+++ .++.-+.......... . ........ . ......+..+.++.+++.++
T Consensus 80 i~~~~l~~~~d~~--~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 154 (194)
T TIGR02081 80 ILSQTLQATRNPE--EILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDL 154 (194)
T ss_pred EEhhHhHcCcCHH--HHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHH
Confidence 9999999998764 678888887654 4443221111000000 0 00000000 0 00000112346799999999
Q ss_pred HHHcCCceeEEEee
Q 030025 160 ATEAGFSGIRFVCF 173 (184)
Q Consensus 160 l~~aGf~~i~~~~~ 173 (184)
++++||++++....
T Consensus 155 l~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 155 CGELNLRILDRAAF 168 (194)
T ss_pred HHHCCCEEEEEEEe
Confidence 99999999987654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-14 Score=102.61 Aligned_cols=133 Identities=11% Similarity=0.048 Sum_probs=98.8
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC------------------CCCceEEEcccCcc-CC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE------------------YPGVKHVGGDMFQS-VP 78 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~~-~~ 78 (184)
+++..+|||+|||.|..+..|+++ +.+|+++|+ +.+++.+.+ ..++++.++|+.+. ..
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 556789999999999999999986 679999999 777775421 14688899999873 21
Q ss_pred --CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 79 --NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 79 --~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
.. |.|+-..+++|++++...+.++.+.++|+|||++++.....+..... . .....+.++
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~-----------------g-Pp~~~~~~e 174 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA-----------------G-PPFSVSDEE 174 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC-----------------C-CCCCCCHHH
Confidence 23 99999999999998888899999999999999866655444322100 0 112358899
Q ss_pred HHHHHHHcCCceeEEEe
Q 030025 156 FTTLATEAGFSGIRFVC 172 (184)
Q Consensus 156 ~~~~l~~aGf~~i~~~~ 172 (184)
+.++|.. +|.+..+..
T Consensus 175 l~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 175 VEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHhcC-CceEEEeee
Confidence 9999863 366655543
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-15 Score=111.20 Aligned_cols=92 Identities=21% Similarity=0.306 Sum_probs=75.3
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCC---CeEEEeec-hhHhhhCCCC-CCceEEEcccCc-cCCCC--CEEEechhhhc
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPH---IKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SVPNG--DAILIKWILHD 91 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~---~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~~~~--D~i~~~~~l~~ 91 (184)
.+..+|||+|||+|.++..+++..+. ..++++|+ +.+++.|++. +++.+..+|..+ +++.. |+|++..+-
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~-- 161 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP-- 161 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC--
Confidence 35578999999999999999988764 37899999 8899888765 889999999987 66654 999886531
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
..+++++|+|||||++++..+.
T Consensus 162 -------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 162 -------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred -------CCHHHHHhhccCCCEEEEEeCC
Confidence 2368899999999999997643
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.7e-15 Score=105.69 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=82.8
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~ 76 (184)
..+...+++.+. ..+..+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++ ++++++.+|..+.
T Consensus 58 p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 58 PHMVAMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 345677788887 77889999999999999999998763 569999999 8888877653 3588999999873
Q ss_pred CC---CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 77 VP---NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 77 ~~---~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
++ ..|+|++..++++++ +++.+.|+|||+|++..
T Consensus 137 ~~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 137 LEKHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 32 239999998887654 35778999999998843
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-15 Score=104.78 Aligned_cols=110 Identities=19% Similarity=0.329 Sum_probs=86.0
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCC-C
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVP-N 79 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~-~ 79 (184)
-...|++.+. ..+.++|||+|||+|.++..++++.|..+++++|+ +.+++.+++. .+++++..|..+..+ .
T Consensus 19 ~t~lL~~~l~-~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~ 97 (170)
T PF05175_consen 19 GTRLLLDNLP-KHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDG 97 (170)
T ss_dssp HHHHHHHHHH-HHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTT
T ss_pred HHHHHHHHHh-hccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccccc
Confidence 3445666666 44788999999999999999999999989999999 8898888663 348899999988555 3
Q ss_pred C-CEEEechhhhcCCh---HHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 80 G-DAILIKWILHDWSD---EHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~---~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. |+|+++-.++.-.+ .-..++++.+.+.|+|||.+++.-
T Consensus 98 ~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 98 KFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp CEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 3 99999888765433 234689999999999999998744
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=103.07 Aligned_cols=110 Identities=15% Similarity=0.238 Sum_probs=89.8
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---C---CceEEEcccCccCCCC-
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---P---GVKHVGGDMFQSVPNG- 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~---~i~~~~~d~~~~~~~~- 80 (184)
.+.+++.++ .....+|||+|||.|.++..+++.+|..+++-+|. ..+++.|++. + +..+...|..++.+..
T Consensus 147 S~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 147 SRLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 467888888 66667999999999999999999999999999999 7888888875 2 3356777777755544
Q ss_pred CEEEechhhhcC---ChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 81 DAILIKWILHDW---SDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 81 D~i~~~~~l~~~---~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
|+|+|+=.||.= .+.-..+++..+++.|++||.|.|.-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999999998862 233345899999999999999999654
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.6e-14 Score=97.28 Aligned_cols=131 Identities=16% Similarity=0.165 Sum_probs=103.0
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc--
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS-- 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~-- 76 (184)
..+.-..++++. +.++.+++|||||||+.+..++...|..+++++|. +++++..+++ +|+..+.+|+.+.
T Consensus 20 ~EIRal~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 20 EEIRALTLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP 98 (187)
T ss_pred HHHHHHHHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc
Confidence 445566778888 88999999999999999999998899999999998 7777766553 8999999999873
Q ss_pred -CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 77 -VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 77 -~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
.+..|.|++... ..+ ..+|+.+...|||||+++..-...+ +...
T Consensus 99 ~~~~~daiFIGGg-~~i-----~~ile~~~~~l~~ggrlV~naitlE-----------------------------~~~~ 143 (187)
T COG2242 99 DLPSPDAIFIGGG-GNI-----EEILEAAWERLKPGGRLVANAITLE-----------------------------TLAK 143 (187)
T ss_pred CCCCCCEEEECCC-CCH-----HHHHHHHHHHcCcCCeEEEEeecHH-----------------------------HHHH
Confidence 333499999888 432 3789999999999999998432221 3455
Q ss_pred HHHHHHHcCC-ceeEEEe
Q 030025 156 FTTLATEAGF-SGIRFVC 172 (184)
Q Consensus 156 ~~~~l~~aGf-~~i~~~~ 172 (184)
..+++++.|+ +++++..
T Consensus 144 a~~~~~~~g~~ei~~v~i 161 (187)
T COG2242 144 ALEALEQLGGREIVQVQI 161 (187)
T ss_pred HHHHHHHcCCceEEEEEe
Confidence 6788899999 5555543
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.8e-14 Score=101.45 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=80.5
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeechhHhhhCCCCCCceEEEcccCcc---------CCC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQS---------VPN 79 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~~~ 79 (184)
.++.+.+..+++..+|||||||+|.++..++++. +..+++++|+..| ...+++.++++|+.+. .+.
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 3445555535778899999999999999999986 4579999999443 2346899999999872 333
Q ss_pred -C-CEEEechhhhcCChHH---------HHHHHHHHHhhCCCCcEEEEEee
Q 030025 80 -G-DAILIKWILHDWSDEH---------CLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 80 -~-D~i~~~~~l~~~~~~~---------~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. |+|++..+.++.+.+. ...+|+.+.+.|+|||.+++...
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 3 9999987766654321 13589999999999999999654
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-13 Score=103.73 Aligned_cols=136 Identities=17% Similarity=0.266 Sum_probs=100.2
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~ 78 (184)
..+++.++.... ..+..+|||+|||+|..+..++...|..+++++|+ +.+++.++++ .++.++.+|+.++.+
T Consensus 94 e~l~~~~~~~~~-~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~ 172 (275)
T PRK09328 94 EELVEWALEALL-LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP 172 (275)
T ss_pred HHHHHHHHHhcc-ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC
Confidence 445555555555 56778999999999999999999999999999999 8888877653 479999999987544
Q ss_pred -CC-CEEEechhhh------cCCh------------------HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcccc
Q 030025 79 -NG-DAILIKWILH------DWSD------------------EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK 132 (184)
Q Consensus 79 -~~-D~i~~~~~l~------~~~~------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 132 (184)
.. |+|+++-... .+.+ +....+++++.+.|+|||++++.- . .
T Consensus 173 ~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g--~--------- 240 (275)
T PRK09328 173 GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-G--Y--------- 240 (275)
T ss_pred CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-C--c---------
Confidence 33 9998853221 1111 122468889999999999998821 0 0
Q ss_pred chhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 133 INSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
...+++.+++++.||..++++.
T Consensus 241 ------------------~~~~~~~~~l~~~gf~~v~~~~ 262 (275)
T PRK09328 241 ------------------DQGEAVRALLAAAGFADVETRK 262 (275)
T ss_pred ------------------hHHHHHHHHHHhCCCceeEEec
Confidence 1245688899999999877754
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-13 Score=98.17 Aligned_cols=105 Identities=14% Similarity=0.180 Sum_probs=80.6
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~ 76 (184)
..+....+..+. +.+..+|||+|||+|.++..+++.. +..+++++|. +.+++.++++ +++.++.+|+.+.
T Consensus 26 ~~~r~~~l~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~ 104 (198)
T PRK00377 26 EEIRALALSKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI 104 (198)
T ss_pred HHHHHHHHHHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh
Confidence 344445567777 8889999999999999999998764 5679999999 8898877543 4688888888762
Q ss_pred ---CCC-CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 77 ---VPN-GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 77 ---~~~-~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.+. .|.|++.... .+...+++.+.+.|+|||++++
T Consensus 105 l~~~~~~~D~V~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 105 LFTINEKFDRIFIGGGS-----EKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred HhhcCCCCCEEEECCCc-----ccHHHHHHHHHHHcCCCcEEEE
Confidence 223 3999885422 2234789999999999999987
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-13 Score=97.26 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=95.9
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CC--ceEEEcccCccCCC-
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PG--VKHVGGDMFQSVPN- 79 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~--i~~~~~d~~~~~~~- 79 (184)
..+++.+. ..+..+|||+|||+|.++..++++ ..+++++|. +.+++.+++. .+ +.++..|+.++++.
T Consensus 13 ~~l~~~~~-~~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 89 (188)
T PRK14968 13 FLLAENAV-DKKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGD 89 (188)
T ss_pred HHHHHhhh-ccCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccccc
Confidence 34455554 456789999999999999999987 579999999 8888877543 22 88899998875443
Q ss_pred C-CEEEechhhhcCC-------------------hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhh
Q 030025 80 G-DAILIKWILHDWS-------------------DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADV 139 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~-------------------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 139 (184)
. |+|+++..+.... ......+++++.+.|+|||.+++.....
T Consensus 90 ~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~------------------ 151 (188)
T PRK14968 90 KFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL------------------ 151 (188)
T ss_pred CceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc------------------
Confidence 3 9999865543311 1123468999999999999998854211
Q ss_pred HhhhhCCCccccCHHHHHHHHHHcCCceeEEEee
Q 030025 140 LVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
...+++.++++++||+.......
T Consensus 152 -----------~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 152 -----------TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred -----------CCHHHHHHHHHHCCCeeeeeeec
Confidence 13467788999999987766543
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=102.81 Aligned_cols=122 Identities=21% Similarity=0.215 Sum_probs=88.3
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCc----eEEEcccCccCCCCCEEEechhhhc
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGV----KHVGGDMFQSVPNGDAILIKWILHD 91 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i----~~~~~d~~~~~~~~D~i~~~~~l~~ 91 (184)
.+..+|||+|||+|.++..+++..+ .+++++|+ +.+++.|+++ +++ .+..+| ...|+|+++...+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----~~fD~Vvani~~~- 190 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----LKADVIVANILAN- 190 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----CCcCEEEEcCcHH-
Confidence 4678999999999999987766543 46999999 8999888764 333 111111 1249998864432
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEE
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFV 171 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~ 171 (184)
....+++++.+.|||||++++++.... ..+++.+.+++.||+.++..
T Consensus 191 ----~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 191 ----PLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred ----HHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 234789999999999999999654321 35678889999999999888
Q ss_pred eecCceEEEE
Q 030025 172 CFFHNLWVME 181 (184)
Q Consensus 172 ~~~~~~~~~~ 181 (184)
.......++-
T Consensus 238 ~~~~W~~~~~ 247 (250)
T PRK00517 238 ERGEWVALVG 247 (250)
T ss_pred EeCCEEEEEE
Confidence 7766555543
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-14 Score=103.65 Aligned_cols=105 Identities=14% Similarity=0.192 Sum_probs=84.2
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~ 76 (184)
+-.+...+++.+. +.+..+|||||||+|+.+..+++.. +..+++++|. +.+++.++++ .+++++.+|....
T Consensus 61 ~p~~~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 61 AIHMVAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG 139 (212)
T ss_pred cHHHHHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence 4456778888887 8899999999999999999888875 4579999999 8999888764 5799999998763
Q ss_pred C-CC--CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 77 V-PN--GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 77 ~-~~--~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+ +. .|+|++...+++++ +.+.+.|||||++++..
T Consensus 140 ~~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 2 22 39999988776543 35667899999999853
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.9e-14 Score=101.72 Aligned_cols=142 Identities=14% Similarity=0.184 Sum_probs=107.1
Q ss_pred HHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc---cCCC--
Q 030025 13 LEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ---SVPN-- 79 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~---~~~~-- 79 (184)
+.++...+..++|||+|||+|..+..++++.+.+++++|++ +.+.+.|++. ++++++++|+.+ ..+.
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~ 115 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFAS 115 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccc
Confidence 33333366789999999999999999999988899999999 8888888764 689999999987 2222
Q ss_pred CCEEEechhhhcCChH----------------HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhh
Q 030025 80 GDAILIKWILHDWSDE----------------HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMT 143 (184)
Q Consensus 80 ~D~i~~~~~l~~~~~~----------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (184)
.|+|+|+=.++-.... ....+++.+.++|||||++.+.-+.
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~----------------------- 172 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP----------------------- 172 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-----------------------
Confidence 3999996554432211 2347899999999999999984421
Q ss_pred hCCCccccCHHHHHHHHHHcCCceeEEEeec------CceEEEEEeC
Q 030025 144 QYPGGKERTKHEFTTLATEAGFSGIRFVCFF------HNLWVMEFYK 184 (184)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~------~~~~~~~~~~ 184 (184)
....++.+++++.+|...++.... ....++++.|
T Consensus 173 -------erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k 212 (248)
T COG4123 173 -------ERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIK 212 (248)
T ss_pred -------HHHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEec
Confidence 135788899999999988877664 3455666654
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=103.32 Aligned_cols=127 Identities=17% Similarity=0.245 Sum_probs=93.9
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCC-C-CEEEechh-
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPN-G-DAILIKWI- 88 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~-~-D~i~~~~~- 88 (184)
.+..+|||+|||+|.++..+++..|+.+++++|+ +.+++.|+++ .++.++.+|+.+..+. . |+|+++-.
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 3457999999999999999999999999999999 8999888764 3689999999775543 3 99998521
Q ss_pred ------------hhcCCh----------HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCC
Q 030025 89 ------------LHDWSD----------EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYP 146 (184)
Q Consensus 89 ------------l~~~~~----------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
++|-+. .....+++.+.+.|+|||++++.- .
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~-g-------------------------- 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV-G-------------------------- 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE-C--------------------------
Confidence 111110 123578999999999999988722 1
Q ss_pred CccccCHHHHHHHHHHcCCceeEEEeecCce
Q 030025 147 GGKERTKHEFTTLATEAGFSGIRFVCFFHNL 177 (184)
Q Consensus 147 ~~~~~~~~~~~~~l~~aGf~~i~~~~~~~~~ 177 (184)
.+.+.+.+.+.+.||...........+
T Consensus 253 ----~~~~~v~~~~~~~~~~~~~~~~~~~~~ 279 (284)
T TIGR03533 253 ----NSMEALEEAYPDVPFTWLEFENGGDGV 279 (284)
T ss_pred ----cCHHHHHHHHHhCCCceeeecCCCcEE
Confidence 134567888888998877665544433
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=101.48 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=85.9
Q ss_pred EEeec-hhHhhhCCCC---------CCceEEEcccCc-cCCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEE
Q 030025 49 INFDL-PHVIQHSPEY---------PGVKHVGGDMFQ-SVPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 49 ~~~D~-~~~~~~a~~~---------~~i~~~~~d~~~-~~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~ 115 (184)
+|+|. +.|++.|+++ ++++++++|+.+ ++++. |+|++.+++|++++.. .++++++|+|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~--~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL--RAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH--HHHHHHHHHcCcCeEEE
Confidence 47899 9999988542 368999999988 66653 9999999999998664 78999999999999999
Q ss_pred EEeeecCCCCCCCcccc-ch-----------hhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEeecC
Q 030025 116 VVESVLPELPENGTHSK-IN-----------SLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFH 175 (184)
Q Consensus 116 i~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~~ 175 (184)
+.|...++......... .. .....+......-..+.+.+++.++++++||+.++......
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~ 150 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISG 150 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcc
Confidence 99987544211000000 00 00000000000001345899999999999999998877653
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=98.72 Aligned_cols=107 Identities=16% Similarity=0.199 Sum_probs=82.6
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc---
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ--- 75 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~--- 75 (184)
..+...+++.+. ..+..+|||+|||+|.++..+++..+..+++++|. +.+++.++++ ++++++.+|+.+
T Consensus 26 ~~v~~~l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~ 104 (196)
T PRK07402 26 REVRLLLISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLA 104 (196)
T ss_pred HHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHh
Confidence 344455777777 78889999999999999999998888899999999 8898887653 578999998865
Q ss_pred cCCC-CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 76 SVPN-GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 76 ~~~~-~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.... .|.+++... .....+++++.+.|+|||++++...
T Consensus 105 ~~~~~~d~v~~~~~------~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 105 QLAPAPDRVCIEGG------RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred hCCCCCCEEEEECC------cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 2222 276655321 1224789999999999999999764
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=96.15 Aligned_cols=144 Identities=17% Similarity=0.251 Sum_probs=103.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc---cCCCC--CEEEechhhhcC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ---SVPNG--DAILIKWILHDW 92 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~~~--D~i~~~~~l~~~ 92 (184)
.++..+|||+|||.|.+...|.+. +++++.|+++ ++.+..+.+ .++..+++|+.+ .+++. |.|+++.+++++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 457899999999999999888875 6899999998 665544432 468899999987 35554 999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCC---------CCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHc
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPE---------NGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEA 163 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 163 (184)
..++ .+|+++.|+ |...+++=+++..+.. -+..... -+.+..+++-+..|..++.++.++.
T Consensus 89 ~~P~--~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~l-----Py~WYdTPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 89 RRPD--EVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKAL-----PYEWYDTPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred hHHH--HHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCC-----CCcccCCCCcccccHHHHHHHHHHC
Confidence 8775 678888776 5566765443332210 0000000 0112225566788999999999999
Q ss_pred CCceeEEEeec
Q 030025 164 GFSGIRFVCFF 174 (184)
Q Consensus 164 Gf~~i~~~~~~ 174 (184)
|+++++.....
T Consensus 159 ~i~I~~~~~~~ 169 (193)
T PF07021_consen 159 GIRIEERVFLD 169 (193)
T ss_pred CCEEEEEEEEc
Confidence 99998877654
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.2e-14 Score=102.28 Aligned_cols=102 Identities=13% Similarity=0.137 Sum_probs=82.1
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~ 78 (184)
.+...+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|. +.+++.|+++ .+++++.+|..+..+
T Consensus 64 ~~~~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 64 HMVAMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc
Confidence 45678888887 88899999999999999999998864 467999999 8899888754 579999999976322
Q ss_pred ---CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 79 ---NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 79 ---~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
..|+|++.....++ .+.+.+.|+|||++++.
T Consensus 143 ~~~~fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred ccCCCCEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 23999987766543 44578899999999984
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-14 Score=102.66 Aligned_cols=99 Identities=12% Similarity=0.227 Sum_probs=77.5
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c---CCC-C-CEEEech
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S---VPN-G-DAILIKW 87 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~---~~~-~-D~i~~~~ 87 (184)
...+|||||||+|.++..+++++|+..++++|. +.+++.|+++ .++.++.+|+.+ + ++. . |.|++.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 457999999999999999999999999999999 8888877543 589999999975 2 333 3 8888866
Q ss_pred hhhcCChHH------HHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDEH------CLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~------~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
...+..... ...+++++.++|||||.+++...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 543322110 13689999999999999998653
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=101.20 Aligned_cols=124 Identities=10% Similarity=0.118 Sum_probs=93.7
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCcc-CCCC-CEEEechhhhcCChHH
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQS-VPNG-DAILIKWILHDWSDEH 96 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~~-~~~~-D~i~~~~~l~~~~~~~ 96 (184)
...+|||+|||+|.++..++.+.+..+++++|+ +.|++.+++. +++.++.+|+.+. .... |+|+++-.+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 457999999999999999988876789999999 9999988775 7899999999873 2333 9999999998865332
Q ss_pred H------------------HHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 97 C------------------LKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 97 ~------------------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
. ..+++.....|+|+|.+++. +...+ . .....+++++.+
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~--yss~~-----------~----------y~~sl~~~~y~~ 200 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA--YSGRP-----------Y----------YDGTMKSNKYLK 200 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE--Eeccc-----------c----------ccccCCHHHHHH
Confidence 2 24566777888888877664 11110 0 012347899999
Q ss_pred HHHHcCCce
Q 030025 159 LATEAGFSG 167 (184)
Q Consensus 159 ~l~~aGf~~ 167 (184)
+++++||..
T Consensus 201 ~l~~~g~~~ 209 (279)
T PHA03411 201 WSKQTGLVT 209 (279)
T ss_pred HHHhcCcEe
Confidence 999999874
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-13 Score=101.81 Aligned_cols=138 Identities=13% Similarity=0.188 Sum_probs=97.4
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSV 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~ 77 (184)
..++..+++.+....+..+|||+|||+|.++..++..+++.+++++|+ +.+++.|+++ .++.++.+|+.+++
T Consensus 99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~ 178 (284)
T TIGR00536 99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL 178 (284)
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC
Confidence 345555555543122336999999999999999999999899999999 8898888764 34899999998865
Q ss_pred CC-C-CEEEech-------------hhhcCCh----------HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcccc
Q 030025 78 PN-G-DAILIKW-------------ILHDWSD----------EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK 132 (184)
Q Consensus 78 ~~-~-D~i~~~~-------------~l~~~~~----------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 132 (184)
+. . |+|+++- +++|-+. .....+++++.+.|+|||++++... .
T Consensus 179 ~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g-~----------- 246 (284)
T TIGR00536 179 AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG-N----------- 246 (284)
T ss_pred cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC-c-----------
Confidence 54 3 9999851 2222111 1345789999999999999877321 0
Q ss_pred chhhhhhHhhhhCCCccccCHHHHHHHHH-HcCCceeEEEee
Q 030025 133 INSLADVLVMTQYPGGKERTKHEFTTLAT-EAGFSGIRFVCF 173 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~aGf~~i~~~~~ 173 (184)
.....+.++++ +.||..+++.+-
T Consensus 247 ------------------~q~~~~~~~~~~~~~~~~~~~~~D 270 (284)
T TIGR00536 247 ------------------WQQKSLKELLRIKFTWYDVENGRD 270 (284)
T ss_pred ------------------cHHHHHHHHHHhcCCCceeEEecC
Confidence 02345666777 468887777653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-13 Score=101.15 Aligned_cols=95 Identities=17% Similarity=0.297 Sum_probs=75.1
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCC-C-CEEEechh---
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPN-G-DAILIKWI--- 88 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~-~-D~i~~~~~--- 88 (184)
..+|||+|||+|.++..+++.+|..+++++|+ +.+++.|+++ ++++++.+|+.+.++. . |+|+++-.
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 36899999999999999999999999999999 8999888764 3589999998775443 3 99998521
Q ss_pred ----------hhcCCh----------HHHHHHHHHHHhhCCCCcEEEE
Q 030025 89 ----------LHDWSD----------EHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 89 ----------l~~~~~----------~~~~~~l~~~~~~L~pgG~l~i 116 (184)
++|-+. +-...+++++.+.|+|||++++
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 111111 2235789999999999999987
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-13 Score=96.95 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=80.0
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCCC-C
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVPN-G 80 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~~-~ 80 (184)
+.-..+..+. ..+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ .++.++.+|+.+..+. .
T Consensus 24 ~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~ 101 (223)
T PRK14967 24 LLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRP 101 (223)
T ss_pred HHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCC
Confidence 3444455555 6677899999999999999888763 358999999 8888877653 3477888888764433 3
Q ss_pred -CEEEechhhhcCCh-------------------HHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 81 -DAILIKWILHDWSD-------------------EHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 81 -D~i~~~~~l~~~~~-------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
|+|+++-..+.-+. .....+++++.+.|||||++++.....
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 99998744322111 013468899999999999999865433
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=106.93 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=82.3
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc---cCCCC
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ---SVPNG 80 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~---~~~~~ 80 (184)
.+++.+. ......+||||||+|.++..+++++|+..++|+|+ +.+++.+.+. .|+.++.+|+.. .+++.
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 4566665 44567999999999999999999999999999999 7787766442 689999999864 34543
Q ss_pred --CEEEechhhhcCChH----HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 81 --DAILIKWILHDWSDE----HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 81 --D~i~~~~~l~~~~~~----~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
|.|++.+..-+.... ....+++++.|+|+|||.+.+.+-
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 999886543321111 013789999999999999999653
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.6e-13 Score=100.54 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=84.5
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCCC-CEEEechhhh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPNG-DAILIKWILH 90 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~~-D~i~~~~~l~ 90 (184)
.+..+|||+|||+|.++..+++. ...+++++|+ +.+++.++++ .++.+...+........ |+|+++...+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 35689999999999999887765 3468999999 8899888764 23455555533322333 9999876543
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEE
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRF 170 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~ 170 (184)
. ...++.++.+.|+|||+++++..... ..+++.+.+++. |+.+++
T Consensus 237 ~-----l~~ll~~~~~~LkpgG~li~sgi~~~-----------------------------~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 V-----IKELYPQFSRLVKPGGWLILSGILET-----------------------------QAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred H-----HHHHHHHHHHHcCCCcEEEEEeCcHh-----------------------------HHHHHHHHHHcc-CceeeE
Confidence 2 34789999999999999999664321 246667777765 887776
Q ss_pred Eee
Q 030025 171 VCF 173 (184)
Q Consensus 171 ~~~ 173 (184)
...
T Consensus 282 ~~~ 284 (288)
T TIGR00406 282 RQR 284 (288)
T ss_pred ecc
Confidence 544
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=102.80 Aligned_cols=136 Identities=17% Similarity=0.249 Sum_probs=97.5
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~ 78 (184)
..+++.+++.+ ++..+|||+|||+|.++..+++..|..+++++|+ +.+++.++++ .++.++.+|+.+ ..+
T Consensus 239 E~LVe~aL~~l---~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~ 315 (423)
T PRK14966 239 EHLVEAVLARL---PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMP 315 (423)
T ss_pred HHHHHHhhhcc---CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccc
Confidence 34455555543 3456999999999999999999889999999999 9999988764 368999999876 332
Q ss_pred --CC-CEEEechhhhcCC-----------------------hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcccc
Q 030025 79 --NG-DAILIKWILHDWS-----------------------DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK 132 (184)
Q Consensus 79 --~~-D~i~~~~~l~~~~-----------------------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 132 (184)
.. |+|+++-....-. -+-...+++.+.+.|+|||.+++ |...
T Consensus 316 ~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~----------- 383 (423)
T PRK14966 316 SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF----------- 383 (423)
T ss_pred cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc-----------
Confidence 23 9999954321100 01123677778889999999876 2211
Q ss_pred chhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 133 INSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
...+.+.+++++.||..+++.+-.
T Consensus 384 ------------------~Q~e~V~~ll~~~Gf~~v~v~kDl 407 (423)
T PRK14966 384 ------------------DQGAAVRGVLAENGFSGVETLPDL 407 (423)
T ss_pred ------------------cHHHHHHHHHHHCCCcEEEEEEcC
Confidence 025678889999999988776543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-13 Score=97.36 Aligned_cols=147 Identities=14% Similarity=0.140 Sum_probs=105.0
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCc-eEEEcccC---c--cCCCC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGV-KHVGGDMF---Q--SVPNG 80 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i-~~~~~d~~---~--~~~~~ 80 (184)
...+++.... ..+..++||+|||||-....+..+. .+.+|+|+ .+|++.|.++.-. ...++|.. . .....
T Consensus 113 ~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~ 189 (287)
T COG4976 113 LLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERF 189 (287)
T ss_pred HHHHHHHhcc-CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcc
Confidence 3455666666 6678999999999999999998885 47799999 8999999876321 11222222 1 11223
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCcc-ccCHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGK-ERTKHEFTTL 159 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 159 (184)
|+|+...|+-++..-+ .+|--+...|+|||.+.++.-..+++.. +.. .++.+ .++...+..+
T Consensus 190 DLi~AaDVl~YlG~Le--~~~~~aa~~L~~gGlfaFSvE~l~~~~~--------f~l-------~ps~RyAH~~~YVr~~ 252 (287)
T COG4976 190 DLIVAADVLPYLGALE--GLFAGAAGLLAPGGLFAFSVETLPDDGG--------FVL-------GPSQRYAHSESYVRAL 252 (287)
T ss_pred cchhhhhHHHhhcchh--hHHHHHHHhcCCCceEEEEecccCCCCC--------eec-------chhhhhccchHHHHHH
Confidence 9999999999998654 7899999999999999997655544310 111 01111 2367888999
Q ss_pred HHHcCCceeEEEeec
Q 030025 160 ATEAGFSGIRFVCFF 174 (184)
Q Consensus 160 l~~aGf~~i~~~~~~ 174 (184)
++..||+++++...+
T Consensus 253 l~~~Gl~~i~~~~tt 267 (287)
T COG4976 253 LAASGLEVIAIEDTT 267 (287)
T ss_pred HHhcCceEEEeeccc
Confidence 999999999987654
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=101.42 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=83.0
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~ 77 (184)
..++..+++... .++..+|||+|||+|.++..++.. ..+++++|+ +.|++.++++ .++.+..+|+.+ +.
T Consensus 168 ~~la~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~ 244 (329)
T TIGR01177 168 PKLARAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPL 244 (329)
T ss_pred HHHHHHHHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCc
Confidence 345666777666 788889999999999999876654 578999999 8888877653 457899999987 55
Q ss_pred CC-C-CEEEechhhhcC-------ChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 78 PN-G-DAILIKWILHDW-------SDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 78 ~~-~-D~i~~~~~l~~~-------~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+. . |+|++.-.+... ..+-...+++++.+.|+|||++++..
T Consensus 245 ~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 245 SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 43 3 999996433211 11224589999999999999999854
|
This family is found exclusively in the Archaea. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-12 Score=91.27 Aligned_cols=104 Identities=14% Similarity=0.177 Sum_probs=75.7
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeechhHhhhCCCCCCceEEEcccCcc---------CCC-
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQS---------VPN- 79 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~~~- 79 (184)
++.+.++.+.+..+|||+|||+|.++..+++++ +..+++++|++.+. ..+++.++.+|+.++ .+.
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 445555556788999999999999999999886 56789999993332 346788998998752 233
Q ss_pred C-CEEEechhhh--------cCC-hHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 80 G-DAILIKWILH--------DWS-DEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 80 ~-D~i~~~~~l~--------~~~-~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. |+|++..+.+ |.. .+....+++.+.+.|+|||++++..
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 3 9999864322 111 1122478999999999999999853
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-12 Score=95.59 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=92.0
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCce----EEEcccCc-cCC-CCCEEEechhh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVK----HVGGDMFQ-SVP-NGDAILIKWIL 89 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~----~~~~d~~~-~~~-~~D~i~~~~~l 89 (184)
.++.+|||+|||+|-++.+.++.. ..+++++|+ |.+++.|+++ +++. ....+... +.. ..|+|+++-.-
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 488999999999999999888874 457999999 9999988875 5555 22222222 221 23999986533
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
+ -...+..++++.+||||+++++..... -.+.+.+.++++||..++
T Consensus 240 ~-----vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------q~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 240 E-----VLVELAPDIKRLLKPGGRLILSGILED-----------------------------QAESVAEAYEQAGFEVVE 285 (300)
T ss_pred H-----HHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------HHHHHHHHHHhCCCeEeE
Confidence 2 234889999999999999999774321 156778889999999998
Q ss_pred EEeecCceEE
Q 030025 170 FVCFFHNLWV 179 (184)
Q Consensus 170 ~~~~~~~~~~ 179 (184)
+........+
T Consensus 286 ~~~~~eW~~i 295 (300)
T COG2264 286 VLEREEWVAI 295 (300)
T ss_pred EEecCCEEEE
Confidence 8877544433
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=95.54 Aligned_cols=104 Identities=13% Similarity=0.189 Sum_probs=81.0
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSV 77 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~ 77 (184)
+-.+...++..+. ..+..+|||+|||+|..+..+++.. .+++++|. +.+++.++++ .++++..+|..+.+
T Consensus 63 ~p~~~~~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 139 (212)
T PRK00312 63 QPYMVARMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW 139 (212)
T ss_pred cHHHHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC
Confidence 3445667777777 8888999999999999998877765 37999998 8888877653 46899999987633
Q ss_pred C---CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 78 P---NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 78 ~---~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+ ..|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 140 ~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 PAYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 2 23999998876654 3457789999999998543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-12 Score=104.19 Aligned_cols=122 Identities=13% Similarity=0.196 Sum_probs=90.8
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCC--CCEEEechhhh-
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPN--GDAILIKWILH- 90 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~--~D~i~~~~~l~- 90 (184)
..+|||+|||+|.++..+++.+|..+++++|+ +.+++.|+++ +++.++.+|+.+..+. .|+|+++-...
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 8899888764 3688999998774433 39999843211
Q ss_pred -------------cCC------h----HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCC
Q 030025 91 -------------DWS------D----EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPG 147 (184)
Q Consensus 91 -------------~~~------~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
|-+ . +-...+++.+.+.|+|||.+++ +...
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~-------------------------- 271 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF-------------------------- 271 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC--------------------------
Confidence 100 0 1223577888999999999887 3211
Q ss_pred ccccCHHHHHHHHHHcCCceeEEEee
Q 030025 148 GKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 148 ~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
...+.+.+++++.||..+++..-
T Consensus 272 ---~q~~~v~~~~~~~g~~~~~~~~D 294 (506)
T PRK01544 272 ---KQEEAVTQIFLDHGYNIESVYKD 294 (506)
T ss_pred ---chHHHHHHHHHhcCCCceEEEec
Confidence 03567788889999998877653
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.2e-12 Score=94.07 Aligned_cols=136 Identities=14% Similarity=0.133 Sum_probs=95.6
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCccCC---
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQSVP--- 78 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~~~~--- 78 (184)
..+++.++..+...++..+|||+|||+|.++..+++..+..+++++|+ +.+++.++++ .+++++.+|+.+..+
T Consensus 71 e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~ 150 (251)
T TIGR03704 71 EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTAL 150 (251)
T ss_pred HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhc
Confidence 445555555543123346899999999999999999988889999999 8999988765 457889999876332
Q ss_pred -CC-CEEEechhhh------cCChH------------------HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcccc
Q 030025 79 -NG-DAILIKWILH------DWSDE------------------HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK 132 (184)
Q Consensus 79 -~~-D~i~~~~~l~------~~~~~------------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 132 (184)
.. |+|+++-... ..+++ -...+++.+.+.|+|||++++.-. . +
T Consensus 151 ~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~-~-~--------- 219 (251)
T TIGR03704 151 RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS-E-R--------- 219 (251)
T ss_pred CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-c-c---------
Confidence 23 9998864321 11111 123788888899999999987421 0 0
Q ss_pred chhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEE
Q 030025 133 INSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFV 171 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~ 171 (184)
...++.+++++.||+..-..
T Consensus 220 -------------------~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 220 -------------------QAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred -------------------hHHHHHHHHHHCCCCceeeE
Confidence 24567888888998865443
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-12 Score=90.28 Aligned_cols=136 Identities=18% Similarity=0.193 Sum_probs=89.6
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCC--CE
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNG--DA 82 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~--D~ 82 (184)
.=++.+++.+...++...|.|+|||.+.++..+.. ..++..+|+ +. .+ .+...|+.+ |+++. |+
T Consensus 58 nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-------n~--~Vtacdia~vPL~~~svDv 125 (219)
T PF05148_consen 58 NPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-------NP--RVTACDIANVPLEDESVDV 125 (219)
T ss_dssp -HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S-------ST--TEEES-TTS-S--TT-EEE
T ss_pred CcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC-------CC--CEEEecCccCcCCCCceeE
Confidence 33567788887455567999999999999966543 357899996 21 12 466788877 88766 99
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHH
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATE 162 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (184)
++++.+|.-- +...+++++.|+|||||.|.|+|... +.-+.+++.+.++.
T Consensus 126 ~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~S---------------------------Rf~~~~~F~~~~~~ 175 (219)
T PF05148_consen 126 AVFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKS---------------------------RFENVKQFIKALKK 175 (219)
T ss_dssp EEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGG---------------------------G-S-HHHHHHHHHC
T ss_pred EEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEecc---------------------------cCcCHHHHHHHHHH
Confidence 9998888743 33579999999999999999988531 22257889999999
Q ss_pred cCCceeEEEeecCceEEEEEeC
Q 030025 163 AGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 163 aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
.||+..........+.+.++.|
T Consensus 176 ~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 176 LGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp TTEEEEEEE--STTEEEEEEEE
T ss_pred CCCeEEecccCCCeEEEEEEEE
Confidence 9999988766667777777664
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.5e-13 Score=98.84 Aligned_cols=108 Identities=15% Similarity=0.225 Sum_probs=81.2
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc---cC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ---SV 77 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~---~~ 77 (184)
.+.|...+.-.+++.+|||||||+|.++..+++.+|..+++++|+ +.+++.|+++ ++++++.+|..+ ..
T Consensus 54 ~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~ 133 (262)
T PRK04457 54 TRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH 133 (262)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC
Confidence 344444333134678999999999999999999999999999999 9999988763 578999999865 22
Q ss_pred CC-CCEEEechhhhc--CCh-HHHHHHHHHHHhhCCCCcEEEEE
Q 030025 78 PN-GDAILIKWILHD--WSD-EHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 78 ~~-~D~i~~~~~l~~--~~~-~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+. +|+|++.. ++. .+. -...++++++++.|+|||++++.
T Consensus 134 ~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 134 RHSTDVILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 33 39998753 221 111 11248999999999999999984
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-11 Score=90.59 Aligned_cols=156 Identities=15% Similarity=0.223 Sum_probs=109.3
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCC--CeEEEeec-hhHhhhCCC------CCCc-eEEEcccCc--cC---CCC-CE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPH--IKGINFDL-PHVIQHSPE------YPGV-KHVGGDMFQ--SV---PNG-DA 82 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~--~~~~~~D~-~~~~~~a~~------~~~i-~~~~~d~~~--~~---~~~-D~ 82 (184)
-..+-+||||+||.|.+....+..+|. ..+...|. +.-++..++ ..++ +|.++|+++ .+ ... ++
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 457789999999999999999999886 78888998 666555544 2555 999999997 22 223 99
Q ss_pred EEechhhhcCChHHHH-HHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCC---c-cccCHHHHH
Q 030025 83 ILIKWILHDWSDEHCL-KLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPG---G-KERTKHEFT 157 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~-~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~ 157 (184)
++++..++.|+|.+.+ ..++.+.+++.|||+|+.+..-+.. ... +..-....|..+ . +.+|..|+.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP--------Qle-~IAr~LtsHr~g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP--------QLE-MIARVLTSHRDGKAWVMRRRSQAEMD 283 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc--------chH-HHHHHHhcccCCCceEEEecCHHHHH
Confidence 9999999999986644 4799999999999999986532211 110 111111111111 1 356999999
Q ss_pred HHHHHcCCceeEEEee-cCceEEEEEe
Q 030025 158 TLATEAGFSGIRFVCF-FHNLWVMEFY 183 (184)
Q Consensus 158 ~~l~~aGf~~i~~~~~-~~~~~~~~~~ 183 (184)
+++++|||+.++.+.- .+.+.+--|.
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GIFTVSlA~ 310 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGIFTVSLAR 310 (311)
T ss_pred HHHHHcCCchhhheeccCCceEEEeec
Confidence 9999999997765543 3455554443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=90.62 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=102.3
Q ss_pred CCcccHHhHHHHHHHhc----CCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc
Q 030025 1 MYNHTTLVLQKILEAYK----GFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ 75 (184)
Q Consensus 1 ~~~~~~~~~~~l~~~~~----~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~ 75 (184)
|.-+|..-.++++..-. .-.+..++||||+|.|..+..++..+.. +.+.+. +.|..+.+++ +.+.+..|-+.
T Consensus 70 MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~k-g~~vl~~~~w~ 146 (265)
T PF05219_consen 70 MFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSKK-GFTVLDIDDWQ 146 (265)
T ss_pred EEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHhC-CCeEEehhhhh
Confidence 33455666666666441 0225678999999999999999999875 455566 6787666553 45555444443
Q ss_pred cCCC-CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec--CCCCC-----CCccccchhhhhhHhhhhCCC
Q 030025 76 SVPN-GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL--PELPE-----NGTHSKINSLADVLVMTQYPG 147 (184)
Q Consensus 76 ~~~~-~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 147 (184)
.-+. .|+|.|.+++..-..| ..+|+++++.|+|+|+++++--.. +.... .++.+. .++ ...
T Consensus 147 ~~~~~fDvIscLNvLDRc~~P--~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~----l~~-----~g~ 215 (265)
T PF05219_consen 147 QTDFKFDVISCLNVLDRCDRP--LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSEL----LPV-----KGA 215 (265)
T ss_pred ccCCceEEEeehhhhhccCCH--HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhh----cCC-----CCC
Confidence 2222 3999999999987666 479999999999999999864321 21111 111111 110 000
Q ss_pred ccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 148 GKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 148 ~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
.-.-....+.+.|+.+||+++..-+.+
T Consensus 216 ~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 216 TFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred cHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 111134555589999999999886654
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=92.15 Aligned_cols=103 Identities=11% Similarity=0.235 Sum_probs=86.0
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~ 78 (184)
-.+...|++.+. +++..+|||||||+|+.+--|++... +++.++. +...+.|+++ .|+.+.++|-..-++
T Consensus 58 P~~vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 58 PHMVARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP 134 (209)
T ss_pred cHHHHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC
Confidence 356788999998 99999999999999999999988854 8899998 8888888774 679999999998544
Q ss_pred C---CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 79 N---GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 79 ~---~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. +|.|++..+.-.+|.. +.+.|+|||++++-.-
T Consensus 135 ~~aPyD~I~Vtaaa~~vP~~--------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 EEAPYDRIIVTAAAPEVPEA--------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCcCEEEEeeccCCCCHH--------HHHhcccCCEEEEEEc
Confidence 3 3999999888876643 5678999999999554
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-12 Score=91.97 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=78.7
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc-------ccCccC-
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG-------DMFQSV- 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~-------d~~~~~- 77 (184)
.+.+.+...-. ..+.++|+|||+|..++-+++.+. +++++|+ +.|++.+++.+++.+... ++.+-.
T Consensus 22 dw~~~ia~~~~---~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g 96 (261)
T KOG3010|consen 22 DWFKKIASRTE---GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG 96 (261)
T ss_pred HHHHHHHhhCC---CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccC
Confidence 34444444432 334899999999988888888765 6799999 999999999865544322 122212
Q ss_pred -CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 78 -PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 78 -~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
++. |+|++..++|++.-+ ++++.++|+||+.|.++.......
T Consensus 97 ~e~SVDlI~~Aqa~HWFdle---~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 97 GEESVDLITAAQAVHWFDLE---RFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred CCcceeeehhhhhHHhhchH---HHHHHHHHHcCCCCCEEEEEEccC
Confidence 234 999999999999765 689999999999997776655543
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.6e-12 Score=90.57 Aligned_cols=105 Identities=16% Similarity=0.255 Sum_probs=87.1
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~ 78 (184)
+..|+..++ +.+..+|+|.|.|+|.++..|+.. .|..+++.+|. ++..+.|+++ +++.+..+|+.+ ..+
T Consensus 83 ~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 83 AGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 345677777 999999999999999999999975 68799999999 9999999875 459999999988 344
Q ss_pred CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 79 NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 79 ~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+. |+|+. .+++| .+++..+.+.|+|||.+++..+..
T Consensus 162 ~~vDav~L-----Dmp~P--W~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 162 EDVDAVFL-----DLPDP--WNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cccCEEEE-----cCCCh--HHHHHHHHHHhCCCcEEEEEcCCH
Confidence 44 99988 44555 488999999999999999966544
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-12 Score=88.24 Aligned_cols=125 Identities=16% Similarity=0.163 Sum_probs=91.5
Q ss_pred CCCC-eEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------C-CceEEEcccCcc-C-CCC-CEEEech
Q 030025 20 EHIK-QLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------P-GVKHVGGDMFQS-V-PNG-DAILIKW 87 (184)
Q Consensus 20 ~~~~-~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~-~i~~~~~d~~~~-~-~~~-D~i~~~~ 87 (184)
++.. +|||+|||.|.++..|++.--....+|+|. +.+++.|+.. + .|+|++.|+.++ + +.. |+|.=-.
T Consensus 65 ~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 65 SKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred cccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecC
Confidence 3444 999999999999999999843456899999 7888877542 3 499999999983 3 222 7774433
Q ss_pred hhhcC------ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHH
Q 030025 88 ILHDW------SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLAT 161 (184)
Q Consensus 88 ~l~~~------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (184)
++..+ +......-+..+.+.|+|||.++|..= -+|..++.+.++
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~dELv~~f~ 194 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTKDELVEEFE 194 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccHHHHHHHHh
Confidence 33322 111223457888999999999999542 247899999999
Q ss_pred HcCCceeEEEeec
Q 030025 162 EAGFSGIRFVCFF 174 (184)
Q Consensus 162 ~aGf~~i~~~~~~ 174 (184)
.-||+....++.+
T Consensus 195 ~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 195 NFNFEYLSTVPTP 207 (227)
T ss_pred cCCeEEEEeeccc
Confidence 9999988877764
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=93.46 Aligned_cols=128 Identities=16% Similarity=0.088 Sum_probs=89.1
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCc--eEEEcccCc-cCCCCCEEEechhhhcC
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGV--KHVGGDMFQ-SVPNGDAILIKWILHDW 92 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i--~~~~~d~~~-~~~~~D~i~~~~~l~~~ 92 (184)
.+..+|||+|||||-++...++.. ..+++++|+ +.+++.|+++ +++ .+......+ ....+|+|+++-...
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI~~~-- 236 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVVANILAD-- 236 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEEEES-HH--
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEEECCCHH--
Confidence 456799999999999999877764 458999999 9999888775 221 222222122 112239998855443
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
....+...+.+.|+|||+|+++...... .+++.+.+++ ||+.++...
T Consensus 237 ---vL~~l~~~~~~~l~~~G~lIlSGIl~~~-----------------------------~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 237 ---VLLELAPDIASLLKPGGYLILSGILEEQ-----------------------------EDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp ---HHHHHHHHCHHHEEEEEEEEEEEEEGGG-----------------------------HHHHHHHHHT-TEEEEEEEE
T ss_pred ---HHHHHHHHHHHhhCCCCEEEEccccHHH-----------------------------HHHHHHHHHC-CCEEEEEEE
Confidence 3357889999999999999997765422 5677788877 999988887
Q ss_pred ecCceEEEEEe
Q 030025 173 FFHNLWVMEFY 183 (184)
Q Consensus 173 ~~~~~~~~~~~ 183 (184)
......+..-+
T Consensus 284 ~~~W~~l~~~K 294 (295)
T PF06325_consen 284 EGEWVALVFKK 294 (295)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 76666655433
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-12 Score=94.83 Aligned_cols=105 Identities=15% Similarity=0.278 Sum_probs=79.8
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~ 76 (184)
+-.+...+++.+. +.+..+|||||||+|+.+..++... +..+++++|. +.+.+.|+++ .++.++.+|....
T Consensus 57 ~P~~~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 57 APSMVARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG 135 (209)
T ss_dssp -HHHHHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc
Confidence 3456788999998 9999999999999999999999884 4457899998 8888888764 5899999998874
Q ss_pred CCC---CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 77 VPN---GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 77 ~~~---~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
++. +|.|++......++ ..+.+.|++||+|++.-
T Consensus 136 ~~~~apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp TGGG-SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEE
T ss_pred cccCCCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEE
Confidence 432 39999988886543 23667789999999843
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=89.34 Aligned_cols=143 Identities=17% Similarity=0.244 Sum_probs=91.7
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----------C----------------------
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----------P---------------------- 64 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------~---------------------- 64 (184)
+-....+|||||.+|.++..+++.+....++|+|+ +..++.|+++ .
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 44668999999999999999999998889999999 8899998774 1
Q ss_pred --------CceE-------EEcccCc-cCCCCCEEEechh----hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 65 --------GVKH-------VGGDMFQ-SVPNGDAILIKWI----LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 65 --------~i~~-------~~~d~~~-~~~~~D~i~~~~~----l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
++.| ...|+.+ ..+..|+|+|..+ --+|.|+-...+|+++.++|.|||+|++.-.-+..
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWks- 214 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKS- 214 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHH-
Confidence 1111 2222222 1233489977543 33367888889999999999999999882111111
Q ss_pred CCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHc--CCceeE
Q 030025 125 PENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEA--GFSGIR 169 (184)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--Gf~~i~ 169 (184)
......... ........-...++.+..++.+. ||+..+
T Consensus 215 -----Y~kaar~~e--~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 215 -----YKKAARRSE--KLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred -----HHHHHHHHH--HhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 000000110 11111122345788899998887 555443
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-11 Score=90.84 Aligned_cols=121 Identities=20% Similarity=0.277 Sum_probs=89.2
Q ss_pred eEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCCCC-CEEEechhh-----h
Q 030025 24 QLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVPNG-DAILIKWIL-----H 90 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~~~-D~i~~~~~l-----~ 90 (184)
+|||+|||+|..+..++...|.++++++|+ +.+++.|+++ .++.++..|.+++.... |+|+++=.. .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 9999988765 33566677888755544 999874211 0
Q ss_pred cCC------------------hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccC
Q 030025 91 DWS------------------DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERT 152 (184)
Q Consensus 91 ~~~------------------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
+.. -+-...+++++.+.|+|||.+++..- . -.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g-~-----------------------------~q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG-L-----------------------------TQ 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC-C-----------------------------Cc
Confidence 000 12345788889999999888887321 0 13
Q ss_pred HHHHHHHHHHcC-CceeEEEeec
Q 030025 153 KHEFTTLATEAG-FSGIRFVCFF 174 (184)
Q Consensus 153 ~~~~~~~l~~aG-f~~i~~~~~~ 174 (184)
.+.+.++|++.| |..+...+-.
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~ 265 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDL 265 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecC
Confidence 677889999999 6666666543
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9e-12 Score=95.52 Aligned_cols=104 Identities=17% Similarity=0.265 Sum_probs=80.1
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC-CeEEEeec-hhHhhhCCCC------CCceEEEcccCccC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH-IKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSV 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~ 77 (184)
..+...+++.+. .++..+|||+|||+|.++..+++..+. ..++++|. +.+++.|++. .++.++.+|..+..
T Consensus 66 p~l~a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 66 PSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc
Confidence 445667777777 778899999999999999999988753 57999999 8888877652 57899999987632
Q ss_pred C---CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 78 P---NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 78 ~---~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+ ..|+|++...+.++ ...+.+.|+|||++++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 2 23999997666543 234677899999998854
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-12 Score=85.61 Aligned_cols=96 Identities=19% Similarity=0.305 Sum_probs=76.4
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c--CCCC--CEEEechhh
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S--VPNG--DAILIKWIL 89 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~--~~~~--D~i~~~~~l 89 (184)
.+|||+|||+|.++..+++.. ..+++++|+ +..++.++.. .+++++.+|+.+ . .+.. |+|+++-.+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999999 8888877653 568999999987 3 4333 999998777
Q ss_pred hcCC------hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 90 HDWS------DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 90 ~~~~------~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.... .+....+++++.++|+|||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 6432 11345889999999999999998653
|
... |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-11 Score=87.31 Aligned_cols=101 Identities=9% Similarity=-0.035 Sum_probs=84.7
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC------------------CCCceEEEcccCc-cCC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE------------------YPGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~-~~~ 78 (184)
.++.++||+.|||.|.-+..|++. +.+++|+|+ +..++.+.+ ..+++++++|+++ +.+
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 445689999999999999999997 568999999 777776422 1478999999998 321
Q ss_pred -----CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 79 -----NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 79 -----~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
..|+|+-..++++++++...+..+.+.++|+|||.+++.....
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 2399999999999999988999999999999999999987644
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=79.08 Aligned_cols=92 Identities=21% Similarity=0.320 Sum_probs=74.5
Q ss_pred eEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCC------CCCCceEEEcccCccC---CCC-CEEEechhhhcC
Q 030025 24 QLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSP------EYPGVKHVGGDMFQSV---PNG-DAILIKWILHDW 92 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~------~~~~i~~~~~d~~~~~---~~~-D~i~~~~~l~~~ 92 (184)
+|+|+|||+|..+..+++ .+..+++++|. +.+.+.++ ...++.++..|..+.. +.. |+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 56789999998 76766554 1267899999998732 233 999999999874
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
.+....+++.+.+.++|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 345568999999999999999885
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-12 Score=95.24 Aligned_cols=109 Identities=21% Similarity=0.296 Sum_probs=80.2
Q ss_pred HHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----------CCceEEEcccC
Q 030025 9 LQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----------PGVKHVGGDMF 74 (184)
Q Consensus 9 ~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------~~i~~~~~d~~ 74 (184)
..+++.+.+. -+.+++||+||||+|..+..+++..+..+++++|+ +.+++.|+++ ++++++.+|..
T Consensus 62 Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~ 141 (283)
T PRK00811 62 YHEMMTHVPLFAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGI 141 (283)
T ss_pred HHHHhhhHHHhhCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchH
Confidence 4445554442 24678999999999999999998655678999999 9999888763 57899999987
Q ss_pred ccC---CC-CCEEEechhhhcCChH--HHHHHHHHHHhhCCCCcEEEEE
Q 030025 75 QSV---PN-GDAILIKWILHDWSDE--HCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 75 ~~~---~~-~D~i~~~~~l~~~~~~--~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+.. +. .|+|++...-..-+.. -..++++.+++.|+|||.+++.
T Consensus 142 ~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 142 KFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred HHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 622 22 3999986543322211 1247899999999999998873
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=89.98 Aligned_cols=142 Identities=17% Similarity=0.170 Sum_probs=102.5
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC--C----------------CCceEE
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE--Y----------------PGVKHV 69 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~--~----------------~~i~~~ 69 (184)
..+.++.+. .++..+||..|||.|.-...|+++ +.+++|+|+ +.+++.+.+ . .+|++.
T Consensus 26 L~~~~~~l~-~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 26 LVEYLDSLA-LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp HHHHHHHHT-TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred HHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 444555555 777889999999999999999997 569999999 778877511 1 357899
Q ss_pred EcccCc-cCCC---CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhC
Q 030025 70 GGDMFQ-SVPN---GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQY 145 (184)
Q Consensus 70 ~~d~~~-~~~~---~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
++|+++ +... .|+|+=..+++-++++.+.+-.+.+.++|+|||.+++.....+.... .
T Consensus 103 ~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~------------------~ 164 (218)
T PF05724_consen 103 CGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM------------------E 164 (218)
T ss_dssp ES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS------------------S
T ss_pred EcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC------------------C
Confidence 999998 3222 29999999999999888889999999999999996665554432210 0
Q ss_pred CCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 146 PGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 146 ~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
......+.+++.++|. .+|++..+..
T Consensus 165 GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 165 GPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp SSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred CcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 0111237899999999 7888776553
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=93.33 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=82.5
Q ss_pred HHhHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcc
Q 030025 6 TLVLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGD 72 (184)
Q Consensus 6 ~~~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d 72 (184)
.....+++.+++. .+++++||+||||.|..++.+++..+..+++.+|+ +.+++.++++ ++++++.+|
T Consensus 74 e~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D 153 (308)
T PLN02366 74 ECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD 153 (308)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh
Confidence 3456677777651 26789999999999999999987644468999999 8888888763 579999999
Q ss_pred cCc---cC-CC-CCEEEechhhhcCChH--HHHHHHHHHHhhCCCCcEEEEE
Q 030025 73 MFQ---SV-PN-GDAILIKWILHDWSDE--HCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 73 ~~~---~~-~~-~D~i~~~~~l~~~~~~--~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
... .. +. .|+|++...-.+-+.. -..++++.+++.|+|||.++..
T Consensus 154 a~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 154 GVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred HHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 864 22 22 3999986543322211 1347899999999999999763
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=81.84 Aligned_cols=116 Identities=20% Similarity=0.352 Sum_probs=99.4
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCC-CCCceEEEcccCc-c--C
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPE-YPGVKHVGGDMFQ-S--V 77 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~--~ 77 (184)
+|..++++|.+... +.....|||+|.|||-++++++++ .+....+.++. +++....++ ++.++++.+|+.+ . .
T Consensus 32 sSs~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l 110 (194)
T COG3963 32 SSSILARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTL 110 (194)
T ss_pred CcHHHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHH
Confidence 57888999999998 888899999999999999999998 56778889988 777766554 5999999999986 2 2
Q ss_pred ---CCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 78 ---PNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 78 ---~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
... |.|+|...+-.++.....++++++...|++||.++.....
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 222 9999999999999888899999999999999999986654
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-10 Score=85.13 Aligned_cols=133 Identities=19% Similarity=0.203 Sum_probs=98.7
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCc-cCCCC--CEEEe
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQ-SVPNG--DAILI 85 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~~~~--D~i~~ 85 (184)
++.|+..+..-+....|.|+|||-+.++. .. .-.+..+|+-. .+=+++..|+.+ |+++. |++++
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a--------~~~~V~~cDm~~vPl~d~svDvaV~ 234 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVA--------VNERVIACDMRNVPLEDESVDVAVF 234 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeeec--------CCCceeeccccCCcCccCcccEEEe
Confidence 55677777755677899999999998875 11 23678888611 244567788888 76654 99988
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCC
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGF 165 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 165 (184)
+.++.- . +...++++++|+|+|||.|+|+|.. +++-+...+.+.|...||
T Consensus 235 CLSLMg--t-n~~df~kEa~RiLk~gG~l~IAEv~---------------------------SRf~dv~~f~r~l~~lGF 284 (325)
T KOG3045|consen 235 CLSLMG--T-NLADFIKEANRILKPGGLLYIAEVK---------------------------SRFSDVKGFVRALTKLGF 284 (325)
T ss_pred eHhhhc--c-cHHHHHHHHHHHhccCceEEEEehh---------------------------hhcccHHHHHHHHHHcCC
Confidence 777763 2 3358999999999999999998842 222356778999999999
Q ss_pred ceeEEEeecCceEEEEEeC
Q 030025 166 SGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~ 184 (184)
......-...++.+.++.|
T Consensus 285 ~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 285 DVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred eeeehhhhcceEEEEEEec
Confidence 9887777777887777654
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.5e-11 Score=96.70 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=75.5
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------------CCceEEEcccCcc---CCCC-C
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------------PGVKHVGGDMFQS---VPNG-D 81 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------------~~i~~~~~d~~~~---~~~~-D 81 (184)
+++++|||||||+|..++.+++..+..+++.+|+ +++++.++++ ++++++.+|..+. .++. |
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4678999999999999999987433379999999 9999998872 5789999998862 2333 9
Q ss_pred EEEechhhhcCChH---HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 82 AILIKWILHDWSDE---HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 82 ~i~~~~~l~~~~~~---~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+|++...-...+.. -..++++.+++.|+|||.+++..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99997543221111 12368999999999999998853
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-11 Score=85.48 Aligned_cols=102 Identities=13% Similarity=0.232 Sum_probs=75.8
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCCC--C
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVPN--G 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~~--~ 80 (184)
.+.+++.+. ..+..+|||+|||+|.++..++++ ..+++++|. +.+++.++++ ++++++.+|+.+ +.+. .
T Consensus 2 ~~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 2 IDKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 567888887 788889999999999999999998 468999999 8888877654 579999999988 5554 2
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhh--CCCCcEEEEEe
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKS--IPEGGKVIVVE 118 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~--L~pgG~l~i~~ 118 (184)
|.|+++..+ ++..+ ++.++.+. +.++|.+++..
T Consensus 79 d~vi~n~Py-~~~~~----~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 79 YKVVGNLPY-NISTP----ILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CEEEECCCc-ccHHH----HHHHHHhcCCCcceEEEEEEH
Confidence 888876554 44433 34444332 34777776643
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.5e-11 Score=90.65 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=79.5
Q ss_pred hHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccC
Q 030025 8 VLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMF 74 (184)
Q Consensus 8 ~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~ 74 (184)
...+++.+++. -+.+++||+||||+|..+..+++..+..+++.+|+ +.+++.++++ ++++++..|..
T Consensus 57 ~y~e~l~~~~l~~~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~ 136 (270)
T TIGR00417 57 IYHEMIAHVPLFTHPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGF 136 (270)
T ss_pred HHHHHhhhhHhhcCCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchH
Confidence 34555555441 24567999999999999999988765678999999 8888877653 46888888876
Q ss_pred cc---CCC-CCEEEechhhhcCChHH--HHHHHHHHHhhCCCCcEEEEE
Q 030025 75 QS---VPN-GDAILIKWILHDWSDEH--CLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 75 ~~---~~~-~D~i~~~~~l~~~~~~~--~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+. .+. .|+|++......-+... ..++++.+++.|+|||.+++.
T Consensus 137 ~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 137 KFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred HHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 51 122 39999865532212211 347899999999999999985
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-11 Score=89.47 Aligned_cols=157 Identities=17% Similarity=0.317 Sum_probs=94.9
Q ss_pred ccHHhHHHHHHHhcCCC-CCCeEEEecCC--cChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC----CC--ceEEEcc
Q 030025 4 HTTLVLQKILEAYKGFE-HIKQLVDVGGS--LGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY----PG--VKHVGGD 72 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~-~~~~ilDiG~G--~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~----~~--i~~~~~d 72 (184)
.++.+.......+. -. .....|||||| |-.++-.++++ .|.++++.+|. |..+..++.. ++ ..++++|
T Consensus 51 ~nR~Fl~RaVr~la-~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD 129 (267)
T PF04672_consen 51 ANRAFLRRAVRYLA-EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQAD 129 (267)
T ss_dssp HHHHHHHHHHHHHH-CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--
T ss_pred HHHHHHHHHHHHHH-HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCC
Confidence 45666777777777 45 78999999999 44566666666 89999999999 8888877653 55 8999999
Q ss_pred cCcc---CC--C--------C-CEEEechhhhcCCh-HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhh
Q 030025 73 MFQS---VP--N--------G-DAILIKWILHDWSD-EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLA 137 (184)
Q Consensus 73 ~~~~---~~--~--------~-D~i~~~~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~ 137 (184)
+.++ +. . . =.+++..++||+++ ++...+++.++..|.||++|+|+....+... .......
T Consensus 130 ~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p-----~~~~~~~ 204 (267)
T PF04672_consen 130 LRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP-----ERAEALE 204 (267)
T ss_dssp TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH-----HHHHHHH
T ss_pred CCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH-----HHHHHHH
Confidence 9973 22 1 1 36788899999976 5677999999999999999999887553211 1111122
Q ss_pred hhHhhhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 138 DVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
..+... ......+|.+++..+|. ||+.++
T Consensus 205 ~~~~~~-~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 205 AVYAQA-GSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHHC-CS----B-HHHHHHCCT--TSEE-T
T ss_pred HHHHcC-CCCceecCHHHHHHHcC--CCccCC
Confidence 222222 23456789999999998 888664
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.3e-11 Score=84.33 Aligned_cols=109 Identities=14% Similarity=0.220 Sum_probs=81.9
Q ss_pred cHHhHHHHHHHhcCCCC--CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc--cCC
Q 030025 5 TTLVLQKILEAYKGFEH--IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ--SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~--~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~--~~~ 78 (184)
+..++...++.+. ++. ..-|||||||+|-.+..+.+. +-..+|+|+ +.|++.|.+. -.-.+...|+=. |+.
T Consensus 33 Q~em~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~Glpfr 109 (270)
T KOG1541|consen 33 QAEMAERALELLA-LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFR 109 (270)
T ss_pred hHHHHHHHHHHhh-CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCC
Confidence 3445556666666 665 788999999999998877665 468899999 9999998763 224677788866 555
Q ss_pred CC--CEEEechhhhcC---------ChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 79 NG--DAILIKWILHDW---------SDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 79 ~~--D~i~~~~~l~~~---------~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.+ |.+|+..+++++ +......+|..++.+|++|++-++
T Consensus 110 pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 110 PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 54 988887777654 334445788999999999999888
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-11 Score=92.09 Aligned_cols=99 Identities=17% Similarity=0.096 Sum_probs=75.9
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC-------------CCCceEEEcccCcc---CCC-C
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE-------------YPGVKHVGGDMFQS---VPN-G 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~~---~~~-~ 80 (184)
.+.+++||+||||+|..++.+++..+..+++.+|+ +.+++.|++ .++++++.+|..+. .+. .
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 35678999999999999999998666679999999 999998885 16899999999872 122 3
Q ss_pred CEEEechhhh---cCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 81 DAILIKWILH---DWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 81 D~i~~~~~l~---~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
|+|++...-. ....--..++++.+++.|+|||.+++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999874211 011112247899999999999998885
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=92.62 Aligned_cols=112 Identities=14% Similarity=0.147 Sum_probs=82.1
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCcc---CC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQS---VP 78 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~---~~ 78 (184)
....+...+. ..+..+|||+|||+|..+..+++..+..+++++|. +.+++.++++ .++.++.+|+.+. .+
T Consensus 232 ~s~~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~ 310 (427)
T PRK10901 232 AAQLAATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWD 310 (427)
T ss_pred HHHHHHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcc
Confidence 3445555666 67889999999999999999999987689999999 8888887664 2468889998762 22
Q ss_pred -C-CCEEEechh------hhc-------CChH-------HHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 79 -N-GDAILIKWI------LHD-------WSDE-------HCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 79 -~-~D~i~~~~~------l~~-------~~~~-------~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
. .|.|++.-. +.+ .... ....+++.+.+.|||||++++++-.
T Consensus 311 ~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 311 GQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred cCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 2 399985321 111 1111 1237899999999999999987743
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.1e-11 Score=86.86 Aligned_cols=129 Identities=15% Similarity=0.283 Sum_probs=95.1
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~ 78 (184)
+..|+..+. +.+..+|||.|.|+|.++..++.. .|..++..+|. ++..+.|+++ .++.+...|+.+ .++
T Consensus 29 ~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 29 ISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 456777887 999999999999999999999987 68899999999 8888888764 579999999975 332
Q ss_pred ----CC-CEEEechhhhcCChHHHHHHHHHHHhhC-CCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccC
Q 030025 79 ----NG-DAILIKWILHDWSDEHCLKLLKNCHKSI-PEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERT 152 (184)
Q Consensus 79 ----~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L-~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
.. |.|+. .+++|. ..+..+.+.| +|||++++..+..+.
T Consensus 108 ~~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQ----------------------------- 151 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCIEQ----------------------------- 151 (247)
T ss_dssp TT-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------
T ss_pred ccccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCHHH-----------------------------
Confidence 23 88887 445553 6799999999 899999996654322
Q ss_pred HHHHHHHHHHcCCceeEEEeec
Q 030025 153 KHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 153 ~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
.....+.|++.||..+++....
T Consensus 152 v~~~~~~L~~~gf~~i~~~Evl 173 (247)
T PF08704_consen 152 VQKTVEALREHGFTDIETVEVL 173 (247)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCeeeEEEEEE
Confidence 2344567788999999887654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-11 Score=86.00 Aligned_cols=99 Identities=17% Similarity=0.269 Sum_probs=69.9
Q ss_pred CCCCeEEEecCCcCh--HHHHHH--hh----CC-CCeEEEeec-hhHhhhCCCC--------------------------
Q 030025 20 EHIKQLVDVGGSLGN--TLKAIT--SK----YP-HIKGINFDL-PHVIQHSPEY-------------------------- 63 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~--~~~~l~--~~----~~-~~~~~~~D~-~~~~~~a~~~-------------------------- 63 (184)
.+.-+|+-.||+||. ++.+|+ +. .+ ..++++.|+ +.+++.|++-
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 356799999999994 333333 31 12 479999999 8888888541
Q ss_pred --------CCceEEEcccCc-cCC-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 64 --------PGVKHVGGDMFQ-SVP-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 64 --------~~i~~~~~d~~~-~~~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.+|.|...|+.+ +.+ .. |+|+|.+++-++.++...++++++.+.|+|||+|++..
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 359999999988 322 33 99999999999999988999999999999999999954
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-10 Score=92.33 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=82.7
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CC----ceEEEcccCc-cC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PG----VKHVGGDMFQ-SV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~----i~~~~~d~~~-~~ 77 (184)
.-...+...+. ..++.+|||+|||+|..+..+++..+..+++++|. +.+++.++++ .+ +.+..+|..+ +.
T Consensus 225 ~~s~~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 225 ASAQWVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred HHHHHHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 33455566666 77789999999999999999999887789999999 8888877654 22 2335666654 21
Q ss_pred --C-C-CCEEEe------chhhhcCChH--------------HHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 78 --P-N-GDAILI------KWILHDWSDE--------------HCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 78 --~-~-~D~i~~------~~~l~~~~~~--------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+ . .|.|++ .+++++.++- ...++|+++.+.|||||+|+.++-..
T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2 2 299985 2355544321 12479999999999999999987554
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-10 Score=84.29 Aligned_cols=99 Identities=12% Similarity=0.178 Sum_probs=77.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc---C------CCC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS---V------PNG 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~---~------~~~ 80 (184)
..+.++|||+|||+|+.+..++... +..+++++|. +.+++.|+++ ++++++.+|+.+. + +..
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 4568999999999999999999875 4689999999 8888888764 5689999999762 1 123
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
|+|++... .+.....+..+.+.|+|||.+++-+..+.
T Consensus 146 D~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn~l~~ 182 (234)
T PLN02781 146 DFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDNTLWF 182 (234)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEcCCcC
Confidence 99988432 23445789999999999999887655443
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.4e-10 Score=86.00 Aligned_cols=106 Identities=10% Similarity=0.149 Sum_probs=80.2
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC----CCCeEEEeec-hhHhhhCCC------CCCceE--EEcccCc
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY----PHIKGINFDL-PHVIQHSPE------YPGVKH--VGGDMFQ 75 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~----~~~~~~~~D~-~~~~~~a~~------~~~i~~--~~~d~~~ 75 (184)
..+|...++ +...|+|+|||+|.-+..+++.. +.++++.+|+ ..+++.+.+ .|.+.+ +++|+.+
T Consensus 67 ~~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 67 SSDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 445555543 55689999999999988887765 3578999999 667765533 366655 8888876
Q ss_pred c---CC-----CC-CEE-EechhhhcCChHHHHHHHHHHHh-hCCCCcEEEEE
Q 030025 76 S---VP-----NG-DAI-LIKWILHDWSDEHCLKLLKNCHK-SIPEGGKVIVV 117 (184)
Q Consensus 76 ~---~~-----~~-D~i-~~~~~l~~~~~~~~~~~l~~~~~-~L~pgG~l~i~ 117 (184)
. ++ .. .++ +..+++.+++++++..+|+++++ .|+|||.|++.
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 2 22 22 555 55679999999999999999999 99999999884
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=91.69 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=80.4
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc---C
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS---V 77 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~---~ 77 (184)
...+...+. ..+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .++.++.+|+.+. +
T Consensus 239 s~lv~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 239 SMLVAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh
Confidence 334445555 6778899999999999999999885 6689999999 8888777653 4589999998762 3
Q ss_pred CCC-CEEEechhh------hcCC-------hHH-------HHHHHHHHHhhCCCCcEEEEEee
Q 030025 78 PNG-DAILIKWIL------HDWS-------DEH-------CLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 78 ~~~-D~i~~~~~l------~~~~-------~~~-------~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+.. |+|++.-.. .+.+ ..+ ...+++.+.+.|||||+++.+.-
T Consensus 318 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 318 AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 333 999874321 1111 111 13689999999999999997653
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.6e-10 Score=82.30 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=72.4
Q ss_pred CCeEEEecCCcChHHHHHHhhC---CCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc-cCCCC-CEEEechhhhcCCh
Q 030025 22 IKQLVDVGGSLGNTLKAITSKY---PHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SVPNG-DAILIKWILHDWSD 94 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~---~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~~~~-D~i~~~~~l~~~~~ 94 (184)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.|++. +++.++..|+.. ++... |+|+++=.++-...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 6799999999999999998864 4579999999 9999999876 789999999986 44333 99999776663321
Q ss_pred ----------HHHHHHHHHHHhhCCCCcEEEE
Q 030025 95 ----------EHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 95 ----------~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.-...+++++.++++||+ +|+
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 123468899999776666 444
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-10 Score=97.59 Aligned_cols=122 Identities=18% Similarity=0.126 Sum_probs=88.3
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------------------CCceEEEcccCccCC
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------------------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------------------~~i~~~~~d~~~~~~ 78 (184)
..+|||+|||+|.++..++++++..+++++|+ +.+++.|+++ ++++++.+|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999998889999999 8888887432 258999999988443
Q ss_pred C----CCEEEechhh------hcCC--------------------------hH----HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 79 N----GDAILIKWIL------HDWS--------------------------DE----HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 79 ~----~D~i~~~~~l------~~~~--------------------------~~----~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. .|+|+++=.. ..++ ++ -..+++.++.+.|+|||.+++ |
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-E 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-N 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-E
Confidence 2 3999884321 0000 00 114677888889999998876 3
Q ss_pred eecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHH-HHHHHcCCceeEEEee
Q 030025 119 SVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFT-TLATEAGFSGIRFVCF 173 (184)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aGf~~i~~~~~ 173 (184)
... ...+.+. ++|++.||+.++++..
T Consensus 278 iG~-----------------------------~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 278 MGG-----------------------------RPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ECc-----------------------------cHHHHHHHHHHHHCCCCeeEEeee
Confidence 211 0234566 5888999998887754
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.1e-10 Score=90.98 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=82.4
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c---
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S--- 76 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~--- 76 (184)
...+...+. ..++.+|||+|||+|..+..+++.. +..+++++|. +.+++.++++ .++.++.+|+.+ +
T Consensus 241 s~l~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 241 AQLVAPLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK 319 (434)
T ss_pred HHHHHHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc
Confidence 444455566 6778999999999999999999885 4469999999 8888877653 468999999876 2
Q ss_pred -CC-CC-CEEEec------hhhhcCChH-------H-------HHHHHHHHHhhCCCCcEEEEEeee
Q 030025 77 -VP-NG-DAILIK------WILHDWSDE-------H-------CLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 77 -~~-~~-D~i~~~------~~l~~~~~~-------~-------~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.. .. |.|++. .++++.++. + ..++|+++.+.|||||+|+.++-.
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 11 23 999863 344443321 1 247899999999999999987643
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.2e-11 Score=91.29 Aligned_cols=98 Identities=20% Similarity=0.261 Sum_probs=69.1
Q ss_pred CCCeEEEecCCcCh-HHHHHHhhCCCCeEEEeec-hhHhhhCCCC------------C----CceEEEcccCc-c----C
Q 030025 21 HIKQLVDVGGSLGN-TLKAITSKYPHIKGINFDL-PHVIQHSPEY------------P----GVKHVGGDMFQ-S----V 77 (184)
Q Consensus 21 ~~~~ilDiG~G~G~-~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------------~----~i~~~~~d~~~-~----~ 77 (184)
+..+|||+|||-|. +.++... ....++|+|+ ...++.|+++ . ...++.+|... . +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 67899999999665 5555443 3569999999 7777777543 1 25667888764 1 1
Q ss_pred -CC--C-CEEEechhhhc-CChH-HHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 78 -PN--G-DAILIKWILHD-WSDE-HCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 78 -~~--~-D~i~~~~~l~~-~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+. . |+|-|.+++|+ +..+ .+..+|+++.+.|+|||+++.+.+.
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 22 3 99999999999 5544 4456999999999999999987663
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.2e-11 Score=85.37 Aligned_cols=96 Identities=17% Similarity=0.279 Sum_probs=69.3
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC------CCCceEEEcccCc----cCC-CC-CEEEechhh
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE------YPGVKHVGGDMFQ----SVP-NG-DAILIKWIL 89 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~----~~~-~~-D~i~~~~~l 89 (184)
..+||||||.|.++..+++.+|+..++|+|. ...+..+.+ ..|+.++++|+.. -++ .. |-|++.+.=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 3899999999999999999999999999998 665555433 3899999999987 233 33 777774432
Q ss_pred hcCChH------HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 90 HDWSDE------HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 90 ~~~~~~------~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
=+.... -...+++.+.+.|+|||.+.+.+
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 111100 01268999999999999998865
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-10 Score=91.10 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=78.8
Q ss_pred HHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCC-C-CC
Q 030025 12 ILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVP-N-GD 81 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~-~-~D 81 (184)
....+. ..+..+|||+|||+|..+..+++.. ...+++++|. +.+++.++++ .++.++.+|+.+..+ . .|
T Consensus 242 ~~~~l~-~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD 320 (445)
T PRK14904 242 ACLLLN-PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPD 320 (445)
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCC
Confidence 334444 5677899999999999999888875 3469999999 8898877654 468899999877322 2 39
Q ss_pred EEEec------hhhh-------cCChH-------HHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 82 AILIK------WILH-------DWSDE-------HCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 82 ~i~~~------~~l~-------~~~~~-------~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+|++. .++. ++..+ ....+|+++.+.|||||+++.++-..
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99862 1111 11111 12368999999999999999977544
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-10 Score=84.77 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=76.5
Q ss_pred CCCeEEEecCCcCh--HHHHHH--hhC----CCCeEEEeec-hhHhhhCCCC----------------------------
Q 030025 21 HIKQLVDVGGSLGN--TLKAIT--SKY----PHIKGINFDL-PHVIQHSPEY---------------------------- 63 (184)
Q Consensus 21 ~~~~ilDiG~G~G~--~~~~l~--~~~----~~~~~~~~D~-~~~~~~a~~~---------------------------- 63 (184)
+.-+|+-.||+||. ++.+|+ +.. ..+++++.|+ +.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34699999999993 444443 322 1478999999 8888877541
Q ss_pred ---------CCceEEEcccCc-cCC--CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 64 ---------PGVKHVGGDMFQ-SVP--NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 64 ---------~~i~~~~~d~~~-~~~--~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
..|.|...|+.+ +++ .. |+|+|.+++.|++++...++++++.+.|+|||+|++..
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 247888888887 443 33 99999999999998888899999999999999988854
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-09 Score=80.74 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=78.9
Q ss_pred CCCeEEEecCCcCh--HHHH--HHhhCC-----CCeEEEeec-hhHhhhCCCC---------------------------
Q 030025 21 HIKQLVDVGGSLGN--TLKA--ITSKYP-----HIKGINFDL-PHVIQHSPEY--------------------------- 63 (184)
Q Consensus 21 ~~~~ilDiG~G~G~--~~~~--l~~~~~-----~~~~~~~D~-~~~~~~a~~~--------------------------- 63 (184)
+.-+|.-.||+||. ++.+ +.+..+ .+++++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999993 3333 334453 589999999 8888888541
Q ss_pred --------CCceEEEcccCc-c-CCCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 64 --------PGVKHVGGDMFQ-S-VPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 64 --------~~i~~~~~d~~~-~-~~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
..|.|...|+.. + .+.. |+|+|.+|+-++..+...+++++++..|+|||.|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 248888999987 4 4444 99999999999998888899999999999999999954
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=87.47 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=80.5
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c--CC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S--VP 78 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~--~~ 78 (184)
..+...+. ..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .++.+..+|..+ + ..
T Consensus 227 ~~~~~~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~ 305 (431)
T PRK14903 227 QIVPLLME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQ 305 (431)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhh
Confidence 33444455 6778899999999999999999885 4679999999 8888888664 457889999875 2 22
Q ss_pred CC-CEEEech------hhhcCCh--------------HHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 79 NG-DAILIKW------ILHDWSD--------------EHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 79 ~~-D~i~~~~------~l~~~~~--------------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.. |.|++.- ++..-++ ....++|+++.+.|||||.++.+.-..
T Consensus 306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 33 9998622 2221111 012478999999999999998876544
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=81.84 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=76.6
Q ss_pred HHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cC--CCCCE
Q 030025 14 EAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SV--PNGDA 82 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~--~~~D~ 82 (184)
..+. ..+..+|||+|||+|..+..+++... ...++++|. +.+++.++++ .++.+...|... +. +..|.
T Consensus 65 ~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 65 LALE-PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred HHhC-CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCE
Confidence 3444 66788999999999999999998863 468999999 8888777653 468888888765 22 22499
Q ss_pred EEech------hhhc-------CChH-------HHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 83 ILIKW------ILHD-------WSDE-------HCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 83 i~~~~------~l~~-------~~~~-------~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
|++.- ++.+ +.+. ...++|+.+.+.|||||+|+.+.-..
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 98632 1211 1111 12369999999999999998876443
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.5e-09 Score=84.56 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=76.0
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc--
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS-- 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~-- 76 (184)
..+++.+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.|++.|+++ .+++++.+|+.+.
T Consensus 283 e~l~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 283 QKMVARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 456677777776 6777899999999999999999875 58999999 8999988764 4699999998752
Q ss_pred ---CC-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 77 ---VP-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 77 ---~~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
++ .. |+|++.-.-.- ..++++.+.+ ++|++.++++
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhhhhcCCCCEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEEE
Confidence 22 22 99988433221 1245565555 6888887773
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-09 Score=79.07 Aligned_cols=94 Identities=17% Similarity=0.268 Sum_probs=70.6
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~ 78 (184)
+..+++++++.+. ..+..+|||||||+|.++..++++.+ .++++|. +.+++.+++. ++++++.+|+.+ +++
T Consensus 14 d~~i~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 14 DESVIQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP 90 (253)
T ss_pred CHHHHHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh
Confidence 4567889999988 88889999999999999999999875 5889998 8888777653 679999999987 554
Q ss_pred CCC---EEEechhhhcCChHHHHHHHHHHHh
Q 030025 79 NGD---AILIKWILHDWSDEHCLKLLKNCHK 106 (184)
Q Consensus 79 ~~D---~i~~~~~l~~~~~~~~~~~l~~~~~ 106 (184)
..| +|+++.. +|+.. .++.++..
T Consensus 91 ~~d~~~~vvsNlP-y~i~~----~il~~ll~ 116 (253)
T TIGR00755 91 DFPKQLKVVSNLP-YNISS----PLIFKLLE 116 (253)
T ss_pred HcCCcceEEEcCC-hhhHH----HHHHHHhc
Confidence 334 5555444 44433 34555544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=81.88 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=83.2
Q ss_pred cccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------C----CceEE
Q 030025 3 NHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------P----GVKHV 69 (184)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~----~i~~~ 69 (184)
+++..+-..|+..+. ++...++|+|||-|.=+..--+. ....++++|+ ...++.|+++ . .+.|+
T Consensus 101 nfNNwIKs~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~ 177 (389)
T KOG1975|consen 101 NFNNWIKSVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFI 177 (389)
T ss_pred hhhHHHHHHHHHHHh--ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEE
Confidence 344455555666664 78889999999988655544443 2458999999 7788887764 1 36788
Q ss_pred EcccCc-c----C--CC--CCEEEechhhhc-CC-hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 70 GGDMFQ-S----V--PN--GDAILIKWILHD-WS-DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 70 ~~d~~~-~----~--~~--~D~i~~~~~l~~-~~-~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.+|-+. . + ++ .|+|-|-+++|+ |. .+.+..+|+++.+.|+|||+++-+-+
T Consensus 178 ~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 178 AADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred EeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 888765 1 2 22 399999999998 55 44566899999999999999987654
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-09 Score=81.81 Aligned_cols=85 Identities=13% Similarity=0.199 Sum_probs=68.1
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCc-cCCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQ-SVPN 79 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~-~~~~ 79 (184)
+..+++.+++.+. ..+..+|||||||+|.++..++++.+ +++++|+ +.|++.+++. ++++++.+|+.+ +++.
T Consensus 27 ~~~i~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 27 DENILDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSE 103 (272)
T ss_pred CHHHHHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHH
Confidence 4567888999887 88889999999999999999999864 8899999 8999888764 589999999987 5544
Q ss_pred C--CEEEechhhhcCC
Q 030025 80 G--DAILIKWILHDWS 93 (184)
Q Consensus 80 ~--D~i~~~~~l~~~~ 93 (184)
. |.|+++-. +++.
T Consensus 104 ~~~~~vv~NlP-Y~is 118 (272)
T PRK00274 104 LQPLKVVANLP-YNIT 118 (272)
T ss_pred cCcceEEEeCC-ccch
Confidence 3 66666543 4444
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.2e-09 Score=79.01 Aligned_cols=100 Identities=12% Similarity=0.097 Sum_probs=78.6
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc---C-----CC-C
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS---V-----PN-G 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~---~-----~~-~ 80 (184)
..+.++|||||+++|+.+.+++...+ ..+++.+|. ++..+.|+++ ++++++.+|+.+. + .. .
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 55689999999999999999998754 568999999 8888888664 5799999998762 1 12 3
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
|+|++-.. .......++.+.++|+|||.+++-+..+..
T Consensus 196 D~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G 233 (278)
T PLN02476 196 DFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDNVLWHG 233 (278)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEecCccCC
Confidence 99988443 345668899999999999998886655543
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=81.56 Aligned_cols=85 Identities=15% Similarity=0.254 Sum_probs=69.8
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~ 78 (184)
+..+++.+++.+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++. ++++++.+|+.+ +++
T Consensus 14 d~~~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 14 DDRVVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP 90 (258)
T ss_pred CHHHHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch
Confidence 5677889999887 8888999999999999999999983 58999999 8888877653 679999999988 665
Q ss_pred CCCEEEechhhhcCC
Q 030025 79 NGDAILIKWILHDWS 93 (184)
Q Consensus 79 ~~D~i~~~~~l~~~~ 93 (184)
..|.|+++... ++.
T Consensus 91 ~~d~Vv~NlPy-~i~ 104 (258)
T PRK14896 91 EFNKVVSNLPY-QIS 104 (258)
T ss_pred hceEEEEcCCc-ccC
Confidence 55888886664 444
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-09 Score=77.99 Aligned_cols=99 Identities=12% Similarity=0.191 Sum_probs=79.1
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEE-cccCccC-----CCCCEE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVG-GDMFQSV-----PNGDAI 83 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~-~d~~~~~-----~~~D~i 83 (184)
..+.++|||||.++|+.+.+|+...| +.+++.+|. +++.+.|+++ +++..+. +|..+.+ +..|+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56789999999999999999999988 889999999 9999999875 4577777 5877622 223999
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
++-.. .......|+.+.++|+|||.+++-....+
T Consensus 137 FIDad-----K~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 137 FIDAD-----KADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEeCC-----hhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 98433 23445789999999999999888655544
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-09 Score=77.83 Aligned_cols=96 Identities=16% Similarity=0.252 Sum_probs=71.4
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC----C--CCceEEEcccCc---c-CCC-C-CEEEechhh
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE----Y--PGVKHVGGDMFQ---S-VPN-G-DAILIKWIL 89 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~--~~i~~~~~d~~~---~-~~~-~-D~i~~~~~l 89 (184)
..+||||||.|.++..+|+++|+..++|+++ ...+..+.+ . +|+.+++.|+.. . .++ . |-|++++.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999997 444433322 1 489999999986 2 344 4 888775542
Q ss_pred hcCCh------HHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 90 HDWSD------EHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 90 ~~~~~------~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
=|... --...+++.+.+.|+|||.|.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 11100 001268999999999999999965
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-08 Score=71.19 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=97.8
Q ss_pred ccHHhHHHHHHHhcCCCC----CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cC
Q 030025 4 HTTLVLQKILEAYKGFEH----IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SV 77 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~----~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~ 77 (184)
++..+++.+..... -.+ .-++|||||=+...... .++-..++.+|+ |+ .=.+.+.|+.+ |+
T Consensus 31 SSK~lv~wL~~~~~-~~~~~~~~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~---------~~~I~qqDFm~rpl 97 (219)
T PF11968_consen 31 SSKWLVEWLKELGV-RPKNGRPKLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ---------HPGILQQDFMERPL 97 (219)
T ss_pred hhHHHHHHhhhhcc-ccccccccceEEeecccCCCCccc---ccCceeeEEeecCCC---------CCCceeeccccCCC
Confidence 45556666655544 222 25999999865554432 344567899997 41 22345678887 66
Q ss_pred CC----C-CEEEechhhhcCCh-HHHHHHHHHHHhhCCCCcE-----EEEEeeecCCCCCCCccccchhhhhhHhhhhCC
Q 030025 78 PN----G-DAILIKWILHDWSD-EHCLKLLKNCHKSIPEGGK-----VIVVESVLPELPENGTHSKINSLADVLVMTQYP 146 (184)
Q Consensus 78 ~~----~-D~i~~~~~l~~~~~-~~~~~~l~~~~~~L~pgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
|. . |+|.++.+|.++|+ .++.++++++.+.|+|+|. |+++-+.. . ..
T Consensus 98 p~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~---C-------------------v~ 155 (219)
T PF11968_consen 98 PKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP---C-------------------VT 155 (219)
T ss_pred CCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch---H-------------------hh
Confidence 52 2 99999999999984 4677999999999999999 87754321 0 12
Q ss_pred CccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 147 GGKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 147 ~~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
++++.+.+.|.++++..||..++.+...
T Consensus 156 NSRy~~~~~l~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 156 NSRYMTEERLREIMESLGFTRVKYKKSK 183 (219)
T ss_pred cccccCHHHHHHHHHhCCcEEEEEEecC
Confidence 5677899999999999999999887664
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-08 Score=73.77 Aligned_cols=145 Identities=15% Similarity=0.162 Sum_probs=85.5
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhh-hCCCCCCce-EEEcccCc-c---C-CC-
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQ-HSPEYPGVK-HVGGDMFQ-S---V-PN- 79 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~-~a~~~~~i~-~~~~d~~~-~---~-~~- 79 (184)
...+++.++...+..++||+|||||.++..+++. ...+++++|. +.|+. ..++.+++. +...|+.. . + ++
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 4456666652236679999999999999999987 3468999999 65555 455555543 44444442 1 1 11
Q ss_pred --CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE-EeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHH
Q 030025 80 --GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV-VESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEF 156 (184)
Q Consensus 80 --~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
.|+++++.. .++..+.++|+| |.+++ .-|.++-........ ....+. ..+..-.+++
T Consensus 142 ~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~--giv~~~-------~~~~~~~~~~ 201 (228)
T TIGR00478 142 ATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKK--GVVRDK-------EAIALALHKV 201 (228)
T ss_pred eeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcC--CeecCH-------HHHHHHHHHH
Confidence 165555333 358889999999 66654 333332211000000 000000 0112245777
Q ss_pred HHHHHHcCCceeEEEeec
Q 030025 157 TTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~~~~ 174 (184)
...+++.||+.+.+.+.+
T Consensus 202 ~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 202 IDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHcCCCeEeeEEECC
Confidence 788889999988877654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.9e-10 Score=79.74 Aligned_cols=97 Identities=15% Similarity=0.254 Sum_probs=75.5
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc---C------CCCC
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS---V------PNGD 81 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~---~------~~~D 81 (184)
.++++|||||+++|+.+.++++..| +.+++.+|. +...+.|++. .+++++.+|+.+. + +..|
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3589999999999999999999875 589999999 8888888663 5799999999761 1 1239
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+|++-.. ..+....++.+.++|+|||.+++-+..+
T Consensus 124 ~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEEEccc-----ccchhhHHHHHhhhccCCeEEEEccccc
Confidence 9999553 2344578999999999999988865544
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.2e-09 Score=74.79 Aligned_cols=111 Identities=9% Similarity=0.035 Sum_probs=76.4
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSV 77 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~ 77 (184)
...+...+++.+....+..+|||+|||+|.++..++.+. ..+++++|. +.+++.++++ .++.++.+|+.+.+
T Consensus 37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l 115 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL 115 (199)
T ss_pred CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH
Confidence 345556667766423456799999999999998766665 368999998 8888777653 46889999987622
Q ss_pred ---CC-CCEEEechhhhcCChHHHHHHHHHHHh--hCCCCcEEEEEee
Q 030025 78 ---PN-GDAILIKWILHDWSDEHCLKLLKNCHK--SIPEGGKVIVVES 119 (184)
Q Consensus 78 ---~~-~D~i~~~~~l~~~~~~~~~~~l~~~~~--~L~pgG~l~i~~~ 119 (184)
.. .|+|++.=.+.. .- ...+++.+.+ +|+|+|.+++...
T Consensus 116 ~~~~~~fDlV~~DPPy~~-g~--~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 116 AQPGTPHNVVFVDPPFRK-GL--LEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred hhcCCCceEEEECCCCCC-Ch--HHHHHHHHHHCCCcCCCcEEEEEec
Confidence 22 399998766432 21 1245565555 4899888777543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=85.78 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=72.5
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCcc---CCCC-CEEEech
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQS---VPNG-DAILIKW 87 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~~---~~~~-D~i~~~~ 87 (184)
+.++|||+|||+|.++..+++.. ..+++++|. +.+++.++++ .+++++.+|+.+. .+.. |+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 46899999999999999999863 347999999 8899988764 2588999998762 2333 9999843
Q ss_pred hhh-------c-C-ChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 88 ILH-------D-W-SDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 88 ~l~-------~-~-~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.-. . + .......+++.+.++|+|||.+++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 211 0 0 11234578899999999999988753
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=80.75 Aligned_cols=98 Identities=10% Similarity=0.050 Sum_probs=70.4
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCcc---C---CC-CCEE
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQS---V---PN-GDAI 83 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~~---~---~~-~D~i 83 (184)
.+..+|||+|||+|.++...+.. ...+++++|. +.+++.++++ .+++++.+|+.+. + .. .|+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 35689999999999998776543 3458999999 8899888764 2578999999862 1 22 3999
Q ss_pred EechhhhcCCh-------HHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 84 LIKWILHDWSD-------EHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 84 ~~~~~l~~~~~-------~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
++.-....-.. .....+++.+.++|+|||.++...
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 98644211111 123456677889999999999855
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.7e-09 Score=75.64 Aligned_cols=115 Identities=16% Similarity=0.275 Sum_probs=72.7
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC---------------CCCceE
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE---------------YPGVKH 68 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------------~~~i~~ 68 (184)
.-.....+++.++ +.+....+|||||.|......+...+--+.+|+++ +...+.|+. ..++++
T Consensus 27 ~~~~~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 27 SPEFVSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp HHHHHHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred CHHHHHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 3456778888988 99999999999999999988887775555999997 655554432 145788
Q ss_pred EEcccCc-c-----CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 69 VGGDMFQ-S-----VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 69 ~~~d~~~-~-----~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
..+|+.+ + +.++|+|++++... ++ +...-+.+....||||-+++-.....+.
T Consensus 106 ~~gdfl~~~~~~~~~s~AdvVf~Nn~~F--~~-~l~~~L~~~~~~lk~G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 106 IHGDFLDPDFVKDIWSDADVVFVNNTCF--DP-DLNLALAELLLELKPGARIISTKPFCPR 163 (205)
T ss_dssp ECS-TTTHHHHHHHGHC-SEEEE--TTT---H-HHHHHHHHHHTTS-TT-EEEESS-SS-T
T ss_pred eccCccccHhHhhhhcCCCEEEEecccc--CH-HHHHHHHHHHhcCCCCCEEEECCCcCCC
Confidence 8999987 3 34569999988754 43 3445567777889999888776555544
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=77.21 Aligned_cols=113 Identities=16% Similarity=0.315 Sum_probs=79.2
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC----CCceEE--EcccC-c--c
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY----PGVKHV--GGDMF-Q--S 76 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~----~~i~~~--~~d~~-~--~ 76 (184)
+..++...++ .-.+.+|||+|||.|..+-++.+.++ ..+++.+|. +.|++.++.. ++.... ..+.. + +
T Consensus 21 vl~El~~r~p-~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 21 VLSELRKRLP-DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHHhCc-CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 4455555555 33567999999999988877777665 357889998 8888876553 211111 11111 1 2
Q ss_pred CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 77 VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 77 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
++..|+|+++++|..+++.+...+++++.+.+.+ .|+|.|+..+.
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 3334999999999999988788999999888876 89998876654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-09 Score=78.78 Aligned_cols=140 Identities=21% Similarity=0.213 Sum_probs=95.3
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--CC--ceEEEcccCc-cCCCC--CEEEechhhhcC
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--PG--VKHVGGDMFQ-SVPNG--DAILIKWILHDW 92 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--~~--i~~~~~d~~~-~~~~~--D~i~~~~~l~~~ 92 (184)
....++|||||-|+..+.+..+. --+++-+|. -.|++.++.. |. +.+..+|-+. ++.+. |+|+++..+|+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 45789999999999999999886 457899998 7899988876 44 4556777665 66554 999999999987
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCc-----ccc-CHHHHHHHHHHcCCc
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGG-----KER-TKHEFTTLATEAGFS 166 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~l~~aGf~ 166 (184)
.+- ..-+.+++..|||+|.++-+-...+...+ ......+..+. ..++ .++ -..++-.+|.+|||.
T Consensus 151 NdL--Pg~m~~ck~~lKPDg~FiasmlggdTLyE------LR~slqLAelE-R~GGiSphiSPf~qvrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 151 NDL--PGSMIQCKLALKPDGLFIASMLGGDTLYE------LRCSLQLAELE-REGGISPHISPFTQVRDIGNLLTRAGFS 221 (325)
T ss_pred ccC--chHHHHHHHhcCCCccchhHHhccccHHH------HHHHhhHHHHH-hccCCCCCcChhhhhhhhhhHHhhcCcc
Confidence 643 25688999999999998763322111100 00000111111 1111 112 357888999999999
Q ss_pred eeEE
Q 030025 167 GIRF 170 (184)
Q Consensus 167 ~i~~ 170 (184)
.+.+
T Consensus 222 m~tv 225 (325)
T KOG2940|consen 222 MLTV 225 (325)
T ss_pred ccee
Confidence 8754
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.5e-09 Score=78.42 Aligned_cols=93 Identities=22% Similarity=0.342 Sum_probs=71.5
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC-------CCCceEEEcccCc-
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE-------YPGVKHVGGDMFQ- 75 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~- 75 (184)
+..+++.+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+
T Consensus 21 d~~i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 21 NPLVLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred CHHHHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 4567889999888 8888999999999999999999874 57899999 888887764 2579999999987
Q ss_pred cCCCCCEEEechhhhcCChHHHHHHH
Q 030025 76 SVPNGDAILIKWILHDWSDEHCLKLL 101 (184)
Q Consensus 76 ~~~~~D~i~~~~~l~~~~~~~~~~~l 101 (184)
+++..|.|+++ .-+++..+...+++
T Consensus 98 ~~~~~d~VvaN-lPY~Istpil~~ll 122 (294)
T PTZ00338 98 EFPYFDVCVAN-VPYQISSPLVFKLL 122 (294)
T ss_pred cccccCEEEec-CCcccCcHHHHHHH
Confidence 55545877764 44455554433344
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.9e-08 Score=71.54 Aligned_cols=133 Identities=16% Similarity=0.182 Sum_probs=91.8
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCc---cCCCC--CEEE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQ---SVPNG--DAIL 84 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~---~~~~~--D~i~ 84 (184)
.++..+|||.+.|-|+++...+++. ...++.++. ++.++.|.-+ .+++.+.+|..+ .+++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 3467899999999999999988884 238888888 9999988765 358999999987 55554 8886
Q ss_pred echhhhcC-ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHc
Q 030025 85 IKWILHDW-SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEA 163 (184)
Q Consensus 85 ~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 163 (184)
-.-.=..+ ..--..++.++++|+|||||.++=..-..... +.+ .--+..+.+.|+++
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r--------------------yrG--~d~~~gVa~RLr~v 268 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR--------------------YRG--LDLPKGVAERLRRV 268 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc--------------------ccc--CChhHHHHHHHHhc
Confidence 41100000 11112379999999999999987533111110 000 11468889999999
Q ss_pred CCceeEEEeec
Q 030025 164 GFSGIRFVCFF 174 (184)
Q Consensus 164 Gf~~i~~~~~~ 174 (184)
||..++.....
T Consensus 269 GF~~v~~~~~~ 279 (287)
T COG2521 269 GFEVVKKVREA 279 (287)
T ss_pred Cceeeeeehhc
Confidence 99988776543
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.2e-09 Score=79.75 Aligned_cols=108 Identities=13% Similarity=0.101 Sum_probs=77.6
Q ss_pred HHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccCc
Q 030025 9 LQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMFQ 75 (184)
Q Consensus 9 ~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~~ 75 (184)
..+++.+.+. .+.+++||.||+|.|..++.+++..+..+++.+|+ +.+++.++++ ++++++.+|..+
T Consensus 89 YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~ 168 (336)
T PLN02823 89 YHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA 168 (336)
T ss_pred HHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH
Confidence 4444444331 23568999999999999999998766678999999 9999988763 679999999887
Q ss_pred cC---CC-CCEEEechhhhcC--ChH---HHHHHHH-HHHhhCCCCcEEEEE
Q 030025 76 SV---PN-GDAILIKWILHDW--SDE---HCLKLLK-NCHKSIPEGGKVIVV 117 (184)
Q Consensus 76 ~~---~~-~D~i~~~~~l~~~--~~~---~~~~~l~-~~~~~L~pgG~l~i~ 117 (184)
.+ +. .|+|++-.. ... ... -..++++ .+++.|+|||.+++.
T Consensus 169 ~L~~~~~~yDvIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 169 ELEKRDEKFDVIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred HHhhCCCCccEEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 22 22 399998632 111 000 0236788 899999999998874
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-08 Score=75.42 Aligned_cols=110 Identities=18% Similarity=0.333 Sum_probs=84.3
Q ss_pred HhHHHHHHHhcCC--CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEccc
Q 030025 7 LVLQKILEAYKGF--EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDM 73 (184)
Q Consensus 7 ~~~~~l~~~~~~~--~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~ 73 (184)
....+++.+.+.+ +..++||-||.|.|.+++.+++..+..+++.+|+ +.+++.++++ ++++.+..|.
T Consensus 60 ~~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg 139 (282)
T COG0421 60 FIYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG 139 (282)
T ss_pred HHHHHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH
Confidence 3455666665532 2346999999999999999999988889999999 9999999885 6789999998
Q ss_pred Cc---cCCC-CCEEEechhhhcCChH---HHHHHHHHHHhhCCCCcEEEEE
Q 030025 74 FQ---SVPN-GDAILIKWILHDWSDE---HCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 74 ~~---~~~~-~D~i~~~~~l~~~~~~---~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
.+ ..+. .|+|++-..=. ..+. -...+++.+++.|+|+|.++..
T Consensus 140 ~~~v~~~~~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 140 VEFLRDCEEKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHhCCCcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 87 2333 39999855433 1110 1137999999999999999986
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=74.85 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=76.6
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccC----------CC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSV----------PN 79 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~----------~~ 79 (184)
..+.++|||||+++|+.+.+++... ++.+++.+|. ++..+.|++. ++|+++.+|+.+.+ +.
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 3458899999999999999999875 5689999998 8777777653 68999999987621 12
Q ss_pred CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 80 GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 80 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
.|+|++-.- .......++.+.++|+|||.+++-+..+.
T Consensus 157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DNvl~~ 194 (247)
T PLN02589 157 FDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDNTLWN 194 (247)
T ss_pred ccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcCCCCC
Confidence 399998543 33455788999999999999887554443
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-08 Score=78.59 Aligned_cols=102 Identities=14% Similarity=0.211 Sum_probs=73.7
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc---
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS--- 76 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~--- 76 (184)
.+.+.+.+.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ .+++++.+|+.+.
T Consensus 279 ~l~~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 279 KLVDRALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHH
Confidence 44556666665 6777899999999999999999874 48999999 8999888764 5799999998651
Q ss_pred --CC-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 77 --VP-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 77 --~~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.. .. |+|++.-.-.-+ . ..+++.+.+ ++|++.+++
T Consensus 356 ~~~~~~~~D~vi~dPPr~G~-~---~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 356 QPWAGQIPDVLLLDPPRKGC-A---AEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred HHhcCCCCCEEEECcCCCCC-C---HHHHHHHHh-cCCCEEEEE
Confidence 21 22 999874331111 1 256666554 789887766
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=71.89 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=75.7
Q ss_pred hHHHHHHHhcC-CCCCCeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCC----------------CCce
Q 030025 8 VLQKILEAYKG-FEHIKQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEY----------------PGVK 67 (184)
Q Consensus 8 ~~~~l~~~~~~-~~~~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~----------------~~i~ 67 (184)
+...+++.+.+ +.+..+.||+|+|+|+++.-++... +....+|+|. ++.++.++++ .++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 34445555442 6688999999999999998888663 3444589998 9999888764 4678
Q ss_pred EEEcccCcc-CC--CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 68 HVGGDMFQS-VP--NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 68 ~~~~d~~~~-~~--~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
++.+|-..- .+ .+|.|.+..... ++-+++...|+|||++++.
T Consensus 148 ivvGDgr~g~~e~a~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 148 IVVGDGRKGYAEQAPYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EEeCCccccCCccCCcceEEEccCcc--------ccHHHHHHhhccCCeEEEe
Confidence 889998872 22 339999974432 4577788899999999983
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.9e-09 Score=78.63 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=71.6
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCc-cCC-CC-CEEEechhh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ-SVP-NG-DAILIKWIL 89 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~-~~~-~~-D~i~~~~~l 89 (184)
=+++.|||||||||-++...++.. ..+++++|.+.+.+.|++. .-++++++.+++ .+| +. |+|++.+.-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 367999999999999999888876 5799999987777777653 348899999988 555 34 999998877
Q ss_pred hcCChHH-HHHHHHHHHhhCCCCcEEE
Q 030025 90 HDWSDEH-CLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 90 ~~~~~~~-~~~~l~~~~~~L~pgG~l~ 115 (184)
+.+-.+. ...+|-.=-++|+|||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 7654332 1234444457899999875
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.5e-08 Score=64.63 Aligned_cols=104 Identities=16% Similarity=0.211 Sum_probs=75.0
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcCh-HHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc-CC---CC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGN-TLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS-VP---NG 80 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~-~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-~~---~~ 80 (184)
.+.+.+.+.++ -.+..+|+|||||+|. .+..|.+. +..++++|+ +..++.+++. .++++..|++++ .. ++
T Consensus 3 ~i~~~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a 78 (134)
T PRK04148 3 TIAEFIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNA 78 (134)
T ss_pred HHHHHHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcC
Confidence 35566777776 5566899999999996 88777765 579999999 8887777543 579999999983 22 23
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
|+|++.. +++|...-+-++.+.+ |.-++|.....
T Consensus 79 ~liysir-----pp~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 79 KLIYSIR-----PPRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred CEEEEeC-----CCHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 9998843 4556666677777776 44577755443
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=5e-08 Score=72.74 Aligned_cols=102 Identities=13% Similarity=0.135 Sum_probs=77.7
Q ss_pred HHhHHHHHHHhcCC--CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcc
Q 030025 6 TLVLQKILEAYKGF--EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGD 72 (184)
Q Consensus 6 ~~~~~~l~~~~~~~--~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d 72 (184)
..+..+++.+.+-. +.+++||=||+|.|..++.+++. |. +++.+|+ +.+++.++++ |+++++..
T Consensus 55 EfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~- 131 (262)
T PRK00536 55 LHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ- 131 (262)
T ss_pred hhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-
Confidence 44667777776632 56799999999999999999996 44 8999999 8999999884 67777652
Q ss_pred cCccC-CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 73 MFQSV-PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 73 ~~~~~-~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+.+.. ...|+|++-.. .+ ..+++.+++.|+|||.++..
T Consensus 132 ~~~~~~~~fDVIIvDs~----~~---~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 132 LLDLDIKKYDLIICLQE----PD---IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred hhhccCCcCCEEEEcCC----CC---hHHHHHHHHhcCCCcEEEEC
Confidence 32222 23499999754 22 26899999999999999884
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-07 Score=66.13 Aligned_cols=116 Identities=13% Similarity=0.118 Sum_probs=80.8
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCCCCCEEEechhhhcCC-
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVPNGDAILIKWILHDWS- 93 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~- 93 (184)
..++|+|+|||||.++...+...+ .+++++|+ +++++.++++ .++.|+..|+.+.....|.++++-.+.-+-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 457899999999999988777654 59999999 9999999876 469999999987544458888866555431
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEE
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFV 171 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~ 171 (184)
..+ ..++..+.+.-+ ++- .+ .+.-+.+-+.+..+++|+++...+
T Consensus 124 haD-r~Fl~~Ale~s~----vVY---------------------si--------H~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 124 HAD-RPFLLKALEISD----VVY---------------------SI--------HKAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred cCC-HHHHHHHHHhhh----eEE---------------------Ee--------eccccHHHHHHHHHhcCCeEEEEE
Confidence 122 256666665531 111 00 011167788888999998877554
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-07 Score=63.78 Aligned_cols=122 Identities=15% Similarity=0.200 Sum_probs=84.9
Q ss_pred CCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCC-----CCCceEEEcccCccCC-CC-CEEEechhhhc-
Q 030025 22 IKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPE-----YPGVKHVGGDMFQSVP-NG-DAILIKWILHD- 91 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~-~~-D~i~~~~~l~~- 91 (184)
..-++|||||+|..+..+++. .|++.+...|+ |.+++...+ ..++..++.|+.+... +. |+++.+-..--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 678999999999999999988 58889999999 877766432 1457888999887332 33 88776432111
Q ss_pred -------------C-----ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCH
Q 030025 92 -------------W-----SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTK 153 (184)
Q Consensus 92 -------------~-----~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
| ..+-..+++..+-.+|.|.|.+++.-.... .+
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N-----------------------------~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN-----------------------------KP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc-----------------------------CH
Confidence 1 111234667777788889999888442211 36
Q ss_pred HHHHHHHHHcCCceeEEEe
Q 030025 154 HEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 154 ~~~~~~l~~aGf~~i~~~~ 172 (184)
+++.+.++.-||.....+.
T Consensus 175 ~ei~k~l~~~g~~~~~~~~ 193 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQ 193 (209)
T ss_pred HHHHHHHhhcccceeEEEE
Confidence 7888888999988665543
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-08 Score=81.63 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=70.4
Q ss_pred HHhHHHHHHHhcCCC----CCCeEEEecCCcChHHHHHHhhC----CCCeEEEeec-hhHhhhCC------CC-CCceEE
Q 030025 6 TLVLQKILEAYKGFE----HIKQLVDVGGSLGNTLKAITSKY----PHIKGINFDL-PHVIQHSP------EY-PGVKHV 69 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~----~~~~ilDiG~G~G~~~~~l~~~~----~~~~~~~~D~-~~~~~~a~------~~-~~i~~~ 69 (184)
..+...+.+... -. ++..|+|||||+|-++...++.. ...++.+++. +.+....+ .. ++|+++
T Consensus 168 ~AI~~al~D~~~-~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi 246 (448)
T PF05185_consen 168 RAIEEALKDRVR-KNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVI 246 (448)
T ss_dssp HHHHHHHHHHHT-TS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEE
T ss_pred HHHHHHHHhhhh-hccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEE
Confidence 344555555544 22 25789999999999987766553 3579999997 55443321 11 689999
Q ss_pred EcccCc-cCCCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEE
Q 030025 70 GGDMFQ-SVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 70 ~~d~~~-~~~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~ 115 (184)
.+|+++ ..|.. |+||+...-.....+-..++|....|.|||||.++
T Consensus 247 ~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 247 HGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 999998 56655 99999665433233333467899999999998865
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-08 Score=74.09 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=81.5
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCC--CEEE
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNG--DAIL 84 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~--D~i~ 84 (184)
+..+++..+ ....++|+|||.|.++. .+|.+..++.|+ ...+.-+++.........|+.+ +.+.. |.++
T Consensus 36 v~qfl~~~~---~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 36 VRQFLDSQP---TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAAL 108 (293)
T ss_pred HHHHHhccC---CcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccch
Confidence 445555544 47899999999998773 358889999999 7777777765544778899988 66554 9999
Q ss_pred echhhhcCChH-HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 85 IKWILHDWSDE-HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 85 ~~~~l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+..++||+... ....+++++.+.++|||..++.-.
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 99999998744 455899999999999999877543
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-08 Score=76.14 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=75.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCc-cCCCC-CEEEechhhhc
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ-SVPNG-DAILIKWILHD 91 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~-D~i~~~~~l~~ 91 (184)
.++.|||+|||+|-++...++.. ..++..++.++|.+.|++. .+|..+.+-+++ .+|+. |+|++.-.-.-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 46889999999999998777764 4588999989999998874 678999999998 78876 99998665555
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEE
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~ 115 (184)
+-.+...+-.-.++++|+|.|+.+
T Consensus 256 L~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhhHHHHHHHHHHHhhcCCCCccc
Confidence 555554555556789999999976
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.2e-08 Score=76.24 Aligned_cols=100 Identities=9% Similarity=-0.004 Sum_probs=67.3
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c--CC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S--VP 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~--~~ 78 (184)
.+.+.+.+. ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.|++. ++++++.+|+.+ . ..
T Consensus 162 ~~~v~~~l~-~~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~ 238 (315)
T PRK03522 162 YATARDWVR-ELPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQG 238 (315)
T ss_pred HHHHHHHHH-hcCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcC
Confidence 334444444 334689999999999999999985 468999999 8999888754 478999999976 2 22
Q ss_pred CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 79 NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 79 ~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.. |+|++.-.-.-.. + .+++.+ ..++|++.+++
T Consensus 239 ~~~D~Vv~dPPr~G~~-~---~~~~~l-~~~~~~~ivyv 272 (315)
T PRK03522 239 EVPDLVLVNPPRRGIG-K---ELCDYL-SQMAPRFILYS 272 (315)
T ss_pred CCCeEEEECCCCCCcc-H---HHHHHH-HHcCCCeEEEE
Confidence 23 9999863311111 1 233333 33677766665
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.9e-08 Score=76.11 Aligned_cols=144 Identities=16% Similarity=0.191 Sum_probs=86.8
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---C-----CceEEE-cc---cCccC--CC-C-CEE
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---P-----GVKHVG-GD---MFQSV--PN-G-DAI 83 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~-----~i~~~~-~d---~~~~~--~~-~-D~i 83 (184)
+..++||||||+|.+...++.+.+.++++++|+ +.+++.|++. + ++.+.. .| +.... +. . |+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 568999999999999988888888999999999 9999988764 2 455543 22 22221 22 2 999
Q ss_pred EechhhhcCChHH---HHHHHHHHH----------------hhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhh
Q 030025 84 LIKWILHDWSDEH---CLKLLKNCH----------------KSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQ 144 (184)
Q Consensus 84 ~~~~~l~~~~~~~---~~~~l~~~~----------------~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (184)
+|+=.+|.-..+. ...-.+.+. .++.+||.+-+......... ....-..+..
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~---------~~~~~~gwft 264 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK---------AFAKQVLWFT 264 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH---------HHHhhCcEEE
Confidence 9988877532221 112233332 33445666555444332210 0000000000
Q ss_pred CCCccccCHHHHHHHHHHcCCceeEEEee
Q 030025 145 YPGGKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
+--++.-+.+.+.+.|++.|...+.+...
T Consensus 265 smv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 265 SLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred EEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 11133448999999999999977776654
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-08 Score=69.01 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=64.3
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC---------CCceEEEcccCcc-----CC-C-CCE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY---------PGVKHVGGDMFQS-----VP-N-GDA 82 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~---------~~i~~~~~d~~~~-----~~-~-~D~ 82 (184)
..+..+|||+|||+|..+..++...+..+++..|.++.++..+.+ .++.+...|--++ .+ . .|+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 457789999999999999988888667899999984465544332 4566666654221 22 2 399
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
|+.+.+++.- +....+++-+.++|+|+|.+++....+
T Consensus 123 IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999999963 344589999999999999977766544
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-08 Score=81.79 Aligned_cols=98 Identities=13% Similarity=0.151 Sum_probs=70.7
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhC-CC-----CCCceEEEcccCc---cCCCC--CEEEechh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHS-PE-----YPGVKHVGGDMFQ---SVPNG--DAILIKWI 88 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a-~~-----~~~i~~~~~d~~~---~~~~~--D~i~~~~~ 88 (184)
....+||||||.|.++..++..+|+..++|+|. ...+..+ ++ ..|+.+...|+.. .+++. |.|++++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 457899999999999999999999999999997 4433322 21 2678888887743 45544 88887554
Q ss_pred hhcCC------hHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 89 LHDWS------DEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 89 l~~~~------~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
==|.. .--...+++.+.+.|+|||.+.+.+
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 22110 0011268999999999999999855
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9e-08 Score=70.61 Aligned_cols=112 Identities=12% Similarity=0.130 Sum_probs=78.1
Q ss_pred HHhHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc
Q 030025 6 TLVLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ 75 (184)
Q Consensus 6 ~~~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~ 75 (184)
..++..+++.+.. ..+...|||+|||+|..+..++.-.|+++++++|. +.++..|.++ .++..+..++..
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 4456666666552 23445899999999999999999999999999999 7788877664 567777555543
Q ss_pred ----cC--CCC--CEEEechhhhcC-------------------------ChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 76 ----SV--PNG--DAILIKWILHDW-------------------------SDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 76 ----~~--~~~--D~i~~~~~l~~~-------------------------~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+. ..+ |+++++-.. -. ..+....++.-+.|.|+|||.+.+.-
T Consensus 211 d~~~~~~l~~~~~dllvsNPPY-I~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 211 DASDEHPLLEGKIDLLVSNPPY-IRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred ccccccccccCceeEEecCCCc-ccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 22 122 777774321 00 12234467778889999999988844
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-07 Score=70.44 Aligned_cols=88 Identities=16% Similarity=0.291 Sum_probs=67.1
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC----CCCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE----YPGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~ 78 (184)
+..+++++++... ..+...|+|||+|.|.+|..|+++.. +++++++ +.+++..++ .++++.+.+|+.+ +++
T Consensus 15 d~~v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 15 DKNVIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFP 91 (259)
T ss_pred CHHHHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcch
Confidence 4567899999998 77789999999999999999999965 4666665 666655544 3789999999998 777
Q ss_pred C--C-CEEEechhhhcCChHH
Q 030025 79 N--G-DAILIKWILHDWSDEH 96 (184)
Q Consensus 79 ~--~-D~i~~~~~l~~~~~~~ 96 (184)
. . +.|++ +.-++++.+-
T Consensus 92 ~l~~~~~vVa-NlPY~Isspi 111 (259)
T COG0030 92 SLAQPYKVVA-NLPYNISSPI 111 (259)
T ss_pred hhcCCCEEEE-cCCCcccHHH
Confidence 4 3 66655 4445566553
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.4e-09 Score=82.22 Aligned_cols=109 Identities=19% Similarity=0.255 Sum_probs=71.6
Q ss_pred HHHHHHHhcC---CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEee---c-hhHhhhCCCCCCceEEEccc-Cc--cCC
Q 030025 9 LQKILEAYKG---FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFD---L-PHVIQHSPEYPGVKHVGGDM-FQ--SVP 78 (184)
Q Consensus 9 ~~~l~~~~~~---~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D---~-~~~~~~a~~~~~i~~~~~d~-~~--~~~ 78 (184)
++.|.+-++. -+....+||+|||+|.++.+|+++. +..+.+- . +...+.|-++ ++....+-+ .+ |+|
T Consensus 102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp 178 (506)
T PF03141_consen 102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFP 178 (506)
T ss_pred HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCC
Confidence 3344455541 2456889999999999999999983 4333332 2 2333333322 233333333 22 777
Q ss_pred CC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 79 NG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 79 ~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.. |+|.|+.++-.|...+ ..+|-++.|+|+|||+++++.+-.
T Consensus 179 ~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 179 SNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred ccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCcc
Confidence 65 9999988888876544 368899999999999999976544
|
; GO: 0008168 methyltransferase activity |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.4e-08 Score=73.39 Aligned_cols=112 Identities=17% Similarity=0.299 Sum_probs=80.6
Q ss_pred HhHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEccc
Q 030025 7 LVLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDM 73 (184)
Q Consensus 7 ~~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~ 73 (184)
....+++.+.+. .+.+++||-||.|.|..++.+++..+..+++.+|+ +.+++.|+++ ++++++..|.
T Consensus 60 ~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg 139 (246)
T PF01564_consen 60 FIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG 139 (246)
T ss_dssp HHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH
T ss_pred HHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh
Confidence 344455554441 34689999999999999999998766779999999 8898888763 6899999999
Q ss_pred Cc---cCCC--CCEEEechhhhcCChH--HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 74 FQ---SVPN--GDAILIKWILHDWSDE--HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 74 ~~---~~~~--~D~i~~~~~l~~~~~~--~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.. .... +|+|++-..--.-+.. -..++++.+++.|+|||.+++..
T Consensus 140 ~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 140 RKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 76 2333 4999884332111111 02378999999999999999865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-07 Score=64.49 Aligned_cols=142 Identities=15% Similarity=0.105 Sum_probs=88.9
Q ss_pred HHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeechhH-----------hhhCCC--CCCceEEEcccCc-cC
Q 030025 13 LEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDLPHV-----------IQHSPE--YPGVKHVGGDMFQ-SV 77 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~-----------~~~a~~--~~~i~~~~~d~~~-~~ 77 (184)
+.... +++..+|+|+=.|.|++++-++... |...+.++-..+. -..+++ +.|++.+..+... ..
T Consensus 41 L~FaG-lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~ 119 (238)
T COG4798 41 LAFAG-LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGA 119 (238)
T ss_pred eEEec-cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCC
Confidence 33444 7889999999999999999888773 4444444431111 111111 1455555555554 33
Q ss_pred CCC-CEEEechhhh---c--CChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCcccc
Q 030025 78 PNG-DAILIKWILH---D--WSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKER 151 (184)
Q Consensus 78 ~~~-D~i~~~~~l~---~--~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
++. |++.....-| . +....+.++...+++.|||||.+++.|+........ .+ +...++.
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~---------~d------t~~~~ri 184 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL---------SD------TITLHRI 184 (238)
T ss_pred CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCCh---------hh------hhhhccc
Confidence 333 7765533222 2 234455689999999999999999999876432111 11 1123345
Q ss_pred CHHHHHHHHHHcCCceeEE
Q 030025 152 TKHEFTTLATEAGFSGIRF 170 (184)
Q Consensus 152 ~~~~~~~~l~~aGf~~i~~ 170 (184)
+...+.+-.+.+||+..-.
T Consensus 185 ~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 185 DPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred ChHHHHHHHHhhcceeeee
Confidence 7888999999999997644
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.9e-07 Score=64.62 Aligned_cols=109 Identities=14% Similarity=0.054 Sum_probs=69.8
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc-
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS- 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~- 76 (184)
+.+...+.+.+...-...++||++||+|.++..++++.. ..++++|. +.+++.++++ .+++++.+|+.+.
T Consensus 34 ~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l 112 (189)
T TIGR00095 34 RVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL 112 (189)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH
Confidence 344445555553223568999999999999999999864 38999998 7777766653 3678999999651
Q ss_pred --C--CC-C-CEEEechhhhcCChHHHHHHHHHHH--hhCCCCcEEEEEe
Q 030025 77 --V--PN-G-DAILIKWILHDWSDEHCLKLLKNCH--KSIPEGGKVIVVE 118 (184)
Q Consensus 77 --~--~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~--~~L~pgG~l~i~~ 118 (184)
. .. . |+|+..=.+.. .. ...+++.+. .+|+++|.+++..
T Consensus 113 ~~~~~~~~~~dvv~~DPPy~~-~~--~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 113 KFLAKKPTFDNVIYLDPPFFN-GA--LQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHhhccCCCceEEEECcCCCC-Cc--HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 1 12 2 55555333322 11 124455443 4688888766643
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.4e-08 Score=71.19 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=61.5
Q ss_pred eEEEcccCc--cC------CC-CCEEEechhhhcCC--hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchh
Q 030025 67 KHVGGDMFQ--SV------PN-GDAILIKWILHDWS--DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINS 135 (184)
Q Consensus 67 ~~~~~d~~~--~~------~~-~D~i~~~~~l~~~~--~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~ 135 (184)
.++..|..+ ++ |. .|+|++.++++... .++....++++.++|||||.|++........ .
T Consensus 137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~----------Y 206 (256)
T PF01234_consen 137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY----------Y 206 (256)
T ss_dssp EEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE----------E
T ss_pred eEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee----------E
Confidence 366788876 33 22 49999999998864 5577799999999999999999988654331 0
Q ss_pred hhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 136 LADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
..+-. ....-..+.+.+.+.++++||.+++...
T Consensus 207 ~vG~~----~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 207 MVGGH----KFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp EETTE----EEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred EECCE----ecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 10000 0011234899999999999999888875
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.7e-07 Score=71.38 Aligned_cols=91 Identities=8% Similarity=-0.016 Sum_probs=65.7
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc---CCC-CCEEEechh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS---VPN-GDAILIKWI 88 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~---~~~-~D~i~~~~~ 88 (184)
.+..+|||++||+|.++..++.. ..+++++|. +.+++.|+++ .++++..+|+.+. ... .|+|++.=.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 34579999999999999999865 468999999 8888887764 4789999998762 212 399888544
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
--.+. ..+++.+. .++|++.++++
T Consensus 310 r~G~~----~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 310 RRGIG----KELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCCCc----HHHHHHHH-hcCCCeEEEEE
Confidence 22111 24556554 47898877773
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-06 Score=62.58 Aligned_cols=144 Identities=13% Similarity=0.161 Sum_probs=94.5
Q ss_pred HHhHHHHHHH---hcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-h----hHhhhCCCCCCceEEEcccCcc
Q 030025 6 TLVLQKILEA---YKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-P----HVIQHSPEYPGVKHVGGDMFQS 76 (184)
Q Consensus 6 ~~~~~~l~~~---~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~----~~~~~a~~~~~i~~~~~d~~~~ 76 (184)
+.++..++.- ++ +.++.+||-+|..+|.+...++.-. +...+.+++. + +.+..|++++|+-.+..|+..|
T Consensus 56 SKLaAai~~Gl~~~~-ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P 134 (229)
T PF01269_consen 56 SKLAAAILKGLENIP-IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHP 134 (229)
T ss_dssp -HHHHHHHTT-S--S---TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSG
T ss_pred hHHHHHHHcCccccC-CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCCh
Confidence 4455555443 44 7789999999999999999999884 5778899986 4 6778888899999999999874
Q ss_pred C------CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccc
Q 030025 77 V------PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKE 150 (184)
Q Consensus 77 ~------~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
. +..|+|++.-+ + ++++.-+..++...||+||.+++.-....-+..... .
T Consensus 135 ~~Y~~lv~~VDvI~~DVa-Q---p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p-------~------------- 190 (229)
T PF01269_consen 135 EKYRMLVEMVDVIFQDVA-Q---PDQARIAALNARHFLKPGGHLIISIKARSIDSTADP-------E------------- 190 (229)
T ss_dssp GGGTTTS--EEEEEEE-S-S---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSH-------H-------------
T ss_pred HHhhcccccccEEEecCC-C---hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCH-------H-------------
Confidence 2 22288887544 2 234556788888999999999986433211100000 0
Q ss_pred cCHHHHHHHHHHcCCceeEEEeec
Q 030025 151 RTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 151 ~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
-.-++-.+.|++.||++++...+.
T Consensus 191 ~vf~~e~~~L~~~~~~~~e~i~Le 214 (229)
T PF01269_consen 191 EVFAEEVKKLKEEGFKPLEQITLE 214 (229)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEE-T
T ss_pred HHHHHHHHHHHHcCCChheEeccC
Confidence 011233466788899999888774
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.4e-07 Score=63.88 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=76.4
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCe---------EEEeec-hhHhhhCCCC-------CCc
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIK---------GINFDL-PHVIQHSPEY-------PGV 66 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~---------~~~~D~-~~~~~~a~~~-------~~i 66 (184)
....++..|+.... +.+...|+|-=||+|.+....+.....+. ++|.|+ +.+++.|+++ ..+
T Consensus 12 L~~~lA~~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 12 LRPTLAAALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp S-HHHHHHHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred CCHHHHHHHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 44567777887776 88889999999999999998887766666 899999 8898888764 357
Q ss_pred eEEEcccCc-cCCC-C-CEEEechhhhcC-ChH-----HHHHHHHHHHhhCCCCcEEEE
Q 030025 67 KHVGGDMFQ-SVPN-G-DAILIKWILHDW-SDE-----HCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 67 ~~~~~d~~~-~~~~-~-D~i~~~~~l~~~-~~~-----~~~~~l~~~~~~L~pgG~l~i 116 (184)
.+..+|+.+ +... . |+|++.-....- ... -...+++++.+.++|...+++
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred EEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 899999998 5333 3 999997766652 221 123567888999999434333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.4e-06 Score=57.56 Aligned_cols=144 Identities=13% Similarity=0.147 Sum_probs=100.6
Q ss_pred HHhHHHHHHH---hcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-----hhHhhhCCCCCCceEEEcccCccC
Q 030025 6 TLVLQKILEA---YKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-----PHVIQHSPEYPGVKHVGGDMFQSV 77 (184)
Q Consensus 6 ~~~~~~l~~~---~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-----~~~~~~a~~~~~i~~~~~d~~~~~ 77 (184)
+.++..+++- ++ ++++.+||=+|..+|.+...++.-.++..+.+++. .+.+..|++++|+-.+..|+..|.
T Consensus 59 SKLaAaIl~Gl~~~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~ 137 (231)
T COG1889 59 SKLAAAILKGLKNFP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPE 137 (231)
T ss_pred hHHHHHHHcCcccCC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcH
Confidence 3455555553 44 78999999999999999999999988778888874 467788899999999999998753
Q ss_pred ------CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCcccc
Q 030025 78 ------PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKER 151 (184)
Q Consensus 78 ------~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
+.-|+|+.--+ .+.++.-+..++...||+||.++++--...-..+.... .
T Consensus 138 ~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~-------~------------- 193 (231)
T COG1889 138 KYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPE-------E------------- 193 (231)
T ss_pred HhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHH-------H-------------
Confidence 22388877322 23445567778899999999888755433221111000 0
Q ss_pred CHHHHHHHHHHcCCceeEEEeec
Q 030025 152 TKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 152 ~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
.-++-.+.|++.||++++...+.
T Consensus 194 vf~~ev~kL~~~~f~i~e~~~Le 216 (231)
T COG1889 194 VFKDEVEKLEEGGFEILEVVDLE 216 (231)
T ss_pred HHHHHHHHHHhcCceeeEEeccC
Confidence 11223456788999999888764
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.8e-07 Score=67.28 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=64.8
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~ 76 (184)
..+++.|++..+ +.++..|||||.|||.++..|+++. .++++++. +.|+....++ ...++.++|+.+ +
T Consensus 44 p~v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 44 PLVIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 356778888887 9999999999999999999999984 57788887 8888776654 468999999998 6
Q ss_pred CCCCCEEEechh
Q 030025 77 VPNGDAILIKWI 88 (184)
Q Consensus 77 ~~~~D~i~~~~~ 88 (184)
+|-.|.++++..
T Consensus 121 ~P~fd~cVsNlP 132 (315)
T KOG0820|consen 121 LPRFDGCVSNLP 132 (315)
T ss_pred CcccceeeccCC
Confidence 666687776433
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-06 Score=61.92 Aligned_cols=123 Identities=17% Similarity=0.168 Sum_probs=86.7
Q ss_pred EEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCC---CCEEEechhhhcCC
Q 030025 25 LVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPN---GDAILIKWILHDWS 93 (184)
Q Consensus 25 ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~---~D~i~~~~~l~~~~ 93 (184)
|.||||-.|++...|++.....+++++|+ +.-++.|++. .++++..+|=.+.++. .|+|++.++-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 68999999999999999988788999999 8888877653 6799999997774433 38888877644
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEee
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
.-..++|++....+++...|++.-. .....++++|.+.||..++..-.
T Consensus 78 -~lI~~ILe~~~~~~~~~~~lILqP~-------------------------------~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 78 -ELIIEILEAGPEKLSSAKRLILQPN-------------------------------THAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp -HHHHHHHHHTGGGGTT--EEEEEES-------------------------------S-HHHHHHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHHHhhHHHhccCCeEEEeCC-------------------------------CChHHHHHHHHHCCCEEEEeEEE
Confidence 4456788888887776667776221 14688899999999999876654
Q ss_pred c---CceEEEEE
Q 030025 174 F---HNLWVMEF 182 (184)
Q Consensus 174 ~---~~~~~~~~ 182 (184)
. ..+.++.+
T Consensus 126 ~e~~~~YeIi~~ 137 (205)
T PF04816_consen 126 EENGRFYEIIVA 137 (205)
T ss_dssp EETTEEEEEEEE
T ss_pred eECCEEEEEEEE
Confidence 3 34445544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.5e-07 Score=68.86 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=65.5
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC----CCceEEEcccCc---cC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ---SV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~---~~ 77 (184)
-+.+++++.+. ..+...++|.+||.|..+..+++..+ +.+++++|. +.+++.+++. .++.++++|+.+ ..
T Consensus 6 Vll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 6 VLLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred ccHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 35788899987 77888999999999999999999985 789999999 9999888764 479999999876 12
Q ss_pred CC---C-CEEEech
Q 030025 78 PN---G-DAILIKW 87 (184)
Q Consensus 78 ~~---~-D~i~~~~ 87 (184)
+. . |.|++..
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 22 3 8887744
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.4e-07 Score=64.40 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCC--CCCeEEEecCCcChHHHHHHhhC-CCCeEEEeechhHhhhCCCCCCceEEEcccCcc---------
Q 030025 9 LQKILEAYKGFE--HIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQS--------- 76 (184)
Q Consensus 9 ~~~l~~~~~~~~--~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~--------- 76 (184)
..++.+.++-++ +..++||+||++|.++..++++. +..+++++|+..+ ...+++.+.++|+.++
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----~~~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----DPLQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----GS-TTEEBTTGGGEEEEHSHHGGGS
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc----ccccceeeeecccchhhHHHhhhhh
Confidence 445666665343 45899999999999999999986 6789999998333 1124555555665431
Q ss_pred CC---CC-CEEEechhhhcC---------ChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 77 VP---NG-DAILIKWILHDW---------SDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 77 ~~---~~-D~i~~~~~l~~~---------~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.+ .. |+|++-.+...- .-+-....+.-+.+.|+|||.+++.-.
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 12 23 999886622111 112223445556677999999988543
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-07 Score=73.05 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=81.5
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCCC--CEEEech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPNG--DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~--D~i~~~~ 87 (184)
..+...++|+|||.|.....+.. +..+..+|+|. +..+.++... +...++..|+.+ ++++. |.+.+..
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 44556899999999999998776 45678899998 6555555432 456668899988 77765 9999999
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
+.+|.++.+ .++++++++++|||.++..+....
T Consensus 187 ~~~~~~~~~--~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 187 VVCHAPDLE--KVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred ecccCCcHH--HHHHHHhcccCCCceEEeHHHHHh
Confidence 999998775 789999999999999999887654
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=69.41 Aligned_cols=107 Identities=15% Similarity=0.093 Sum_probs=78.6
Q ss_pred cHHhHHHHHHHhcCCC-CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFE-HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~-~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~ 76 (184)
.+.+...+++.+. .. +..+|||++||+|..+..++...+...++++|+ +.+++.++++ .++.+...|+...
T Consensus 41 nrdl~~~v~~~~~-~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~ 119 (382)
T PRK04338 41 NRDISVLVLRAFG-PKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL 119 (382)
T ss_pred hhhHHHHHHHHHH-hhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH
Confidence 4455556666654 22 346899999999999999998876568999999 8888888764 3466888888652
Q ss_pred C--CC-CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 77 V--PN-GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 77 ~--~~-~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. .. .|+|++.- + ..+ ..+++.+.+.++|||.+.++-
T Consensus 120 l~~~~~fD~V~lDP-~---Gs~--~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 120 LHEERKFDVVDIDP-F---GSP--APFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred HhhcCCCCEEEECC-C---CCc--HHHHHHHHHHhcCCCEEEEEe
Confidence 2 22 39998843 2 222 257888788899999999983
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.2e-06 Score=58.70 Aligned_cols=109 Identities=20% Similarity=0.218 Sum_probs=77.5
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeechhHhhhCCCCCCceEEEcccCc-c--------CC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQ-S--------VP 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~--------~~ 78 (184)
..+|.+.+.-+.+...|+|+|+-.|.++..+++.. +...++++|+..|- ..+++.++++|++. + ++
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----cCCCceEEeeeccCccHHHHHHHHcC
Confidence 45566666657888999999999999999998885 45669999984442 23679999999987 2 13
Q ss_pred CC--CEEEechhh--------hcCC-hHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 79 NG--DAILIKWIL--------HDWS-DEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 79 ~~--D~i~~~~~l--------~~~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.. |+|++-.+- +|.- -.-....++-+...|+|||.+++-....
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 32 888864332 3321 1122355677778999999999976544
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.9e-07 Score=62.85 Aligned_cols=93 Identities=13% Similarity=0.222 Sum_probs=69.0
Q ss_pred CCCCC-eEEEecCCcChHHHHHHhhCCCCeEEEeec-h---hHhhhCCC---CCCceEEEcccCc-cCCCC-CEEEechh
Q 030025 19 FEHIK-QLVDVGGSLGNTLKAITSKYPHIKGINFDL-P---HVIQHSPE---YPGVKHVGGDMFQ-SVPNG-DAILIKWI 88 (184)
Q Consensus 19 ~~~~~-~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~---~~~~~a~~---~~~i~~~~~d~~~-~~~~~-D~i~~~~~ 88 (184)
++... +++|||+|.|--+..++=.+|+.+++.+|. . .+++.+.. .+|++++...+++ ..... |+|++..+
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAV 124 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESS
T ss_pred hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehh
Confidence 34444 899999999999999999999999999995 3 23333322 2789999999988 33333 99999776
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
-. - ..+++-+.+.++|||.+++.
T Consensus 125 ~~----l--~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 AP----L--DKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp SS----H--HHHHHHHGGGEEEEEEEEEE
T ss_pred cC----H--HHHHHHHHHhcCCCCEEEEE
Confidence 42 2 36899999999999999984
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.8e-07 Score=70.78 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=50.1
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ 75 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~ 75 (184)
.+...+++.+. ..+ .+|||++||+|.++..+++.. .+++++|. +.+++.++++ .+++++.+|+.+
T Consensus 185 ~l~~~v~~~~~-~~~-~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 185 KMLEWACEVTQ-GSK-GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHhh-cCC-CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 34445555544 323 479999999999999888876 38999999 8999888764 468899999875
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-05 Score=61.24 Aligned_cols=110 Identities=13% Similarity=0.124 Sum_probs=80.7
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEc-ccCc-cC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGG-DMFQ-SV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~-d~~~-~~ 77 (184)
.+++.+.+... ..++..|||-=||||.++....-. +++++|.|+ ..|++-++.+ ....+... |+.+ ++
T Consensus 184 ~lAR~mVNLa~-v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl 260 (347)
T COG1041 184 RLARAMVNLAR-VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPL 260 (347)
T ss_pred HHHHHHHHHhc-cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCC
Confidence 34555555555 778889999999999999877665 789999999 8899888875 34444444 8887 77
Q ss_pred CCC--CEEEechhhhc------CC-hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 78 PNG--DAILIKWILHD------WS-DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 78 ~~~--D~i~~~~~l~~------~~-~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
++. |.|++--...- -. ++-..++|+.+.++|++||++++..+
T Consensus 261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 764 99887322211 11 23355889999999999999999554
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-06 Score=62.84 Aligned_cols=89 Identities=17% Similarity=0.243 Sum_probs=70.1
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-h---hHhhhCCCC---CCceEEEcccCc-c-CCC-CCEEEechhhhc
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-P---HVIQHSPEY---PGVKHVGGDMFQ-S-VPN-GDAILIKWILHD 91 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~---~~~~~a~~~---~~i~~~~~d~~~-~-~~~-~D~i~~~~~l~~ 91 (184)
..+++|||+|.|--+..++=.+|+.+++-+|. . .+++.+.+. +|++++++.+++ . ... +|+|++..+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 68999999999999999998899999999994 2 344444332 789999999987 2 234 79999977642
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
...+++-+..++++||.++.
T Consensus 147 -----L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 147 -----LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -----hHHHHHHHHHhcccCCcchh
Confidence 23678888999999998765
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.2e-07 Score=63.39 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=91.9
Q ss_pred cccHHhHHHHHHHh-cCCC-CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCC
Q 030025 3 NHTTLVLQKILEAY-KGFE-HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPN 79 (184)
Q Consensus 3 ~~~~~~~~~l~~~~-~~~~-~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~ 79 (184)
-++..-.++++..= +.++ .+.++||+|+|.|.++..++..+.+ +.+.++ ..|..+.++.. .... ...+....
T Consensus 92 ifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk~-ynVl--~~~ew~~t 166 (288)
T KOG3987|consen 92 IFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKKN-YNVL--TEIEWLQT 166 (288)
T ss_pred EecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhcC-Ccee--eehhhhhc
Confidence 34445555555543 2222 4589999999999999999988754 455555 67877765542 1111 11111122
Q ss_pred ---CCEEEechhhhcCChHHHHHHHHHHHhhCCC-CcEEEEEeeec--CCCCCCCccccchhhhhhHhhhhCCCcccc--
Q 030025 80 ---GDAILIKWILHDWSDEHCLKLLKNCHKSIPE-GGKVIVVESVL--PELPENGTHSKINSLADVLVMTQYPGGKER-- 151 (184)
Q Consensus 80 ---~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~p-gG~l~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 151 (184)
.|+|.|.+.+..--++ .++|+.+..+|+| +|+++++-... +............ -.++.. -.|+.+
T Consensus 167 ~~k~dli~clNlLDRc~~p--~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~r-Pdn~Le----~~Gr~~ee 239 (288)
T KOG3987|consen 167 DVKLDLILCLNLLDRCFDP--FKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLR-PDNLLE----NNGRSFEE 239 (288)
T ss_pred CceeehHHHHHHHHhhcCh--HHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCC-chHHHH----hcCccHHH
Confidence 2999999998864444 4899999999999 89988753211 1111110000000 000000 022222
Q ss_pred CHHHHHHHHHHcCCceeEEEee
Q 030025 152 TKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 152 ~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
..+.+.++|+++||.+.-.-+.
T Consensus 240 ~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 240 EVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHHHhcCchhhhhhcC
Confidence 4567889999999997654443
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.36 E-value=2e-06 Score=64.68 Aligned_cols=98 Identities=15% Similarity=0.271 Sum_probs=72.1
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC----CCCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE----YPGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~ 78 (184)
+..+++++++.+. ..+...|+|||+|+|.+|..+++.. .++++++. +.+.+..++ .++++++.+|+.+ +.+
T Consensus 15 ~~~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 15 DPNIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGG
T ss_pred CHHHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccH
Confidence 5678999999998 8899999999999999999999987 68888887 766665554 4789999999998 444
Q ss_pred C----C-CEEEechhhhcCChHHHHHHHHHHHhhCCC
Q 030025 79 N----G-DAILIKWILHDWSDEHCLKLLKNCHKSIPE 110 (184)
Q Consensus 79 ~----~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~p 110 (184)
. . ..|+.+.. ++++. .++.++...-+.
T Consensus 92 ~~~~~~~~~vv~NlP-y~is~----~il~~ll~~~~~ 123 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLP-YNISS----PILRKLLELYRF 123 (262)
T ss_dssp GHCSSSEEEEEEEET-GTGHH----HHHHHHHHHGGG
T ss_pred HhhcCCceEEEEEec-ccchH----HHHHHHhhcccc
Confidence 3 3 45555433 34432 466666664444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.9e-06 Score=66.77 Aligned_cols=100 Identities=16% Similarity=0.226 Sum_probs=70.1
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC------CCceEEEcccCc---cCCCC-CEEEe-
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ---SVPNG-DAILI- 85 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~---~~~~~-D~i~~- 85 (184)
.++..+|||+++|.|.-+..+++... ...+++.|+ +.-++..+++ .++.+...|... .++.. |.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 56789999999999999999999863 468999998 6555554432 567777777764 23344 88874
Q ss_pred ---ch--hhhc-------CChH-------HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 86 ---KW--ILHD-------WSDE-------HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 86 ---~~--~l~~-------~~~~-------~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+. ++.. +..+ -..++|+.+.+.|||||+|+-++
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 22 2221 1111 11578999999999999997653
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.9e-05 Score=57.50 Aligned_cols=147 Identities=13% Similarity=0.201 Sum_probs=91.4
Q ss_pred hHHHHHHHhcC---CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHh-------hhC---CCC----------
Q 030025 8 VLQKILEAYKG---FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVI-------QHS---PEY---------- 63 (184)
Q Consensus 8 ~~~~l~~~~~~---~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-------~~a---~~~---------- 63 (184)
+.+.|.+.++. -....+||--|||.|.++-.++.+ +..+.+.+. -.|+ ... ++.
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~s 117 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFS 117 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceeccc
Confidence 34445555541 123578999999999999999998 345566653 2221 111 110
Q ss_pred --------------------------CCceEEEcccCc--cCC---CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCC
Q 030025 64 --------------------------PGVKHVGGDMFQ--SVP---NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEG 111 (184)
Q Consensus 64 --------------------------~~i~~~~~d~~~--~~~---~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pg 111 (184)
.++....+|+.+ ..+ .. |+|+.++.+. ..+...+.++.+.++||||
T Consensus 118 n~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 118 NQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKPG 195 (270)
T ss_pred CCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhccC
Confidence 247777888877 222 23 9998875554 3345668899999999999
Q ss_pred cEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 112 GKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 112 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
|.+|=..|..=..... . ......-..+.+|+.++.++.||+.++...
T Consensus 196 G~WIN~GPLlyh~~~~----------~----~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 196 GYWINFGPLLYHFEPM----------S----IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CEEEecCCccccCCCC----------C----CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 9665444332111000 0 000012345899999999999999987665
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-06 Score=68.75 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=49.2
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ 75 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~ 75 (184)
+.+.+.+.+. .. ..+|||++||+|.++..+++.. .+++++|. +.+++.++++ .+++++.+|+.+
T Consensus 195 l~~~v~~~~~-~~-~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 195 MLEWALDATK-GS-KGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred HHHHHHHHhh-cC-CCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 4444555444 22 3579999999999999888875 38999999 8899888764 478899999865
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-06 Score=59.03 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=73.5
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCCCCEEEechhhhcCC
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPNGDAILIKWILHDWS 93 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~~D~i~~~~~l~~~~ 93 (184)
.....|+|.|+|-++.-.++. .-++++++. |...+.|.++ .|++.+.+|+.+ .++++|+|+|...=--+-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi 110 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALI 110 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhh
Confidence 378999999999999876666 458899988 8888888775 679999999998 787779998854322222
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+++.+.+++.+-..|+.+++++=.
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred cccccHHHHHHHHHhhcCCccccH
Confidence 344468899999999999998743
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.26 E-value=7e-06 Score=55.90 Aligned_cols=91 Identities=18% Similarity=0.305 Sum_probs=61.7
Q ss_pred CCCCCeEEEecCCcChHHHHHHhh----CCCCeEEEeec-hhHhhhCCCC---------CCceEEEcccCc-cCCCC-CE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSK----YPHIKGINFDL-PHVIQHSPEY---------PGVKHVGGDMFQ-SVPNG-DA 82 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~~~---------~~i~~~~~d~~~-~~~~~-D~ 82 (184)
..+..+|+|+|||.|+++..++.. .++.+++++|. +...+.++++ .++.+...+..+ ..... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 467889999999999999999982 27889999998 6666666543 345555555544 22333 77
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
++..++-..+.+ .+++.+.+ |+-..++
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR---PNARFLV 129 (141)
T ss_pred EEEeecccchHH----HHHHHHHH---cCCCEEE
Confidence 777666655443 45666666 5554444
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-05 Score=61.83 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=67.6
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccC--CCC-CEEEechhhhcCChH
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSV--PNG-DAILIKWILHDWSDE 95 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~--~~~-D~i~~~~~l~~~~~~ 95 (184)
+.+..++|||||++|.++..++++ +.+++++|...|.......++|.+...|..... +.. |.++|--+-. |
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~----P 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK----P 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC----H
Confidence 357789999999999999999998 469999998667666677799999999998733 333 9999966633 3
Q ss_pred HHHHHHHHHHhhCCCC
Q 030025 96 HCLKLLKNCHKSIPEG 111 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pg 111 (184)
. ++.+-+.++|..|
T Consensus 283 ~--rva~lm~~Wl~~g 296 (357)
T PRK11760 283 A--RVAELMAQWLVNG 296 (357)
T ss_pred H--HHHHHHHHHHhcC
Confidence 3 6788888898766
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.21 E-value=3e-06 Score=60.93 Aligned_cols=90 Identities=18% Similarity=0.272 Sum_probs=64.4
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCC-C-CEEEechh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPN-G-DAILIKWI 88 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~-~-D~i~~~~~ 88 (184)
..++..|+|.-||.|.++..+++..+..+++++|+ |.+.+..++. .++....+|..+-.+. . |-|++...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 56789999999999999999999777789999999 8888776553 5688899998873323 3 98888654
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEE
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKV 114 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l 114 (184)
-+ ...++..+.+++++||.+
T Consensus 179 ~~------~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 179 ES------SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp SS------GGGGHHHHHHHEEEEEEE
T ss_pred HH------HHHHHHHHHHHhcCCcEE
Confidence 22 125788899999999876
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.3e-05 Score=54.82 Aligned_cols=151 Identities=16% Similarity=0.132 Sum_probs=93.6
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hh-HhhhCCCCCCceE-EEcccCc----cCCCC-
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PH-VIQHSPEYPGVKH-VGGDMFQ----SVPNG- 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~-~~~~a~~~~~i~~-~~~d~~~----~~~~~- 80 (184)
...+++.+.-..++..+||||+.||.++.-++++. ...+.++|. .. +.-..|+.+++.. ...++.. .+.+.
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 34556666634478899999999999999988874 358899997 43 3334455566433 3444433 22223
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE-eeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV-ESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|++++--++-. ...+|-.+..+++|+|-++.. -|.++-.... ...-....-+..+..-...+.++
T Consensus 146 d~~v~DvSFIS-----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~---------v~kkGvv~d~~~~~~v~~~i~~~ 211 (245)
T COG1189 146 DLIVIDVSFIS-----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQ---------VGKKGVVRDPKLHAEVLSKIENF 211 (245)
T ss_pred CeEEEEeehhh-----HHHHHHHHHHhcCCCceEEEEecchhhhhhhh---------cCcCceecCcchHHHHHHHHHHH
Confidence 88888666652 237899999999999887762 2222221110 00000000111233456888899
Q ss_pred HHHcCCceeEEEeec
Q 030025 160 ATEAGFSGIRFVCFF 174 (184)
Q Consensus 160 l~~aGf~~i~~~~~~ 174 (184)
+++.||+...+...+
T Consensus 212 ~~~~g~~~~gl~~Sp 226 (245)
T COG1189 212 AKELGFQVKGLIKSP 226 (245)
T ss_pred HhhcCcEEeeeEccC
Confidence 999999998887653
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.5e-05 Score=56.57 Aligned_cols=128 Identities=15% Similarity=0.193 Sum_probs=87.9
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~ 78 (184)
...|+..+. ..+..+|+|-|.|+|.++.++++. .|..++..+|. ..-.+.|++. .++++.+.|+.. -+.
T Consensus 94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 456777887 899999999999999999999998 58889999997 5444444432 689999999986 333
Q ss_pred C----CCEEEechhhhcCChHHHHHHHHHHHhhCCCCc-EEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCH
Q 030025 79 N----GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGG-KVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTK 153 (184)
Q Consensus 79 ~----~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
. +|+|+.. ++.|. ..+--+++.||.+| +++--.+..+. .
T Consensus 173 ~ks~~aDaVFLD-----lPaPw--~AiPha~~~lk~~g~r~csFSPCIEQ-----------------------------v 216 (314)
T KOG2915|consen 173 IKSLKADAVFLD-----LPAPW--EAIPHAAKILKDEGGRLCSFSPCIEQ-----------------------------V 216 (314)
T ss_pred ccccccceEEEc-----CCChh--hhhhhhHHHhhhcCceEEeccHHHHH-----------------------------H
Confidence 2 2888873 33232 34666666888777 54443332211 1
Q ss_pred HHHHHHHHHcCCceeEEEee
Q 030025 154 HEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 154 ~~~~~~l~~aGf~~i~~~~~ 173 (184)
..-.+.+.+.||..++....
T Consensus 217 qrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 217 QRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred HHHHHHHHhCCCceEEEEEe
Confidence 12246677888888877654
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.6e-05 Score=57.21 Aligned_cols=148 Identities=16% Similarity=0.097 Sum_probs=94.4
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCC---------CCCceEEEcccCccC----------CCC
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPE---------YPGVKHVGGDMFQSV----------PNG 80 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~----------~~~ 80 (184)
.+...|+.+|||.-.....+... +++++..+|.|++++.-++ .++..++..|+...+ ++.
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34668999999999888776432 3588999998776654322 256788888886321 122
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHh-hhhCCCccccCHHHHHH
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLV-MTQYPGGKERTKHEFTT 158 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 158 (184)
-++++.+++.+++.++...+|+.+.+...||+.+++.- ..+.... .............. ....+-....++.++.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDY-VRPLDGE-WRAGMRAPVYHAARGVDGSGLVFGIDRADVAE 236 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEe-ccccchh-HHHHHHHHHHHhhhcccccccccCCChhhHHH
Confidence 57888999999999998999999999998998887733 2221100 00000000000000 00000011347899999
Q ss_pred HHHHcCCceeEE
Q 030025 159 LATEAGFSGIRF 170 (184)
Q Consensus 159 ~l~~aGf~~i~~ 170 (184)
+|++.||+..+.
T Consensus 237 ~l~~~Gw~~~~~ 248 (260)
T TIGR00027 237 WLAERGWRASEH 248 (260)
T ss_pred HHHHCCCeeecC
Confidence 999999997754
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.9e-05 Score=52.28 Aligned_cols=95 Identities=18% Similarity=0.308 Sum_probs=65.1
Q ss_pred EEEecCCcChHHHHHHhhCCC-CeEEEeec-hhHhhhCCCCC---C---ceEEEcccCc---cCCC--C-CEEEechhhh
Q 030025 25 LVDVGGSLGNTLKAITSKYPH-IKGINFDL-PHVIQHSPEYP---G---VKHVGGDMFQ---SVPN--G-DAILIKWILH 90 (184)
Q Consensus 25 ilDiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~~---~---i~~~~~d~~~---~~~~--~-D~i~~~~~l~ 90 (184)
++|+|||+|... .+....+. ..++++|. +.++..++... . +.+...|... ++.. . |++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999977 34444333 47888998 76666643321 1 5777777654 4443 3 8884444444
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
+.. ....++++.+.++|+|.+++.......
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 444 347899999999999999998776543
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.4e-06 Score=56.67 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=53.0
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCcc-CCCC--CEEEechhhhc
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQS-VPNG--DAILIKWILHD 91 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~-~~~~--D~i~~~~~l~~ 91 (184)
.++.++|+|||.|.++.. ...+..-.++|+|+ +++++.++.+ -++++.+.|+.++ +... |.++++-.+.-
T Consensus 48 Egkkl~DLgcgcGmLs~a-~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIA-FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFGT 126 (185)
T ss_pred cCcchhhhcCchhhhHHH-hhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCCc
Confidence 568999999999999943 33455668999999 9999998876 3578888888873 2223 88888766653
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.1e-05 Score=62.06 Aligned_cols=113 Identities=12% Similarity=0.188 Sum_probs=75.6
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-------CCCCeEEEeec-hhHhhhCCCC--------CCceE
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-------YPHIKGINFDL-PHVIQHSPEY--------PGVKH 68 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-------~~~~~~~~~D~-~~~~~~a~~~--------~~i~~ 68 (184)
...+++.|.+.+. ..+..+|+|-+||+|.++..+.+. .+...+.|+|+ +.+...++-+ .+..+
T Consensus 31 P~~i~~l~~~~~~-~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 31 PREIVDLMVKLLN-PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp -HHHHHHHHHHHT-T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred HHHHHHHHHhhhh-ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 3456777777776 677789999999999999888874 36789999998 7777665421 33568
Q ss_pred EEcccCc-c-CC--CC-CEEEechhhhcC--------------------ChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 69 VGGDMFQ-S-VP--NG-DAILIKWILHDW--------------------SDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 69 ~~~d~~~-~-~~--~~-D~i~~~~~l~~~--------------------~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..+|... + .. .. |+|+++-.+-.. ...+ ..++..+.+.|++||++.+.-+
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAE-YAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHH-HHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchh-hhhHHHHHhhcccccceeEEec
Confidence 8888875 3 22 22 999885443322 0112 3588999999999999877544
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=8e-05 Score=58.78 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=73.7
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCccC----C---CCCEEEe
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQSV----P---NGDAILI 85 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~~~----~---~~D~i~~ 85 (184)
.++|||+=|=||.++...+... -.+++.||. ...++.|+++ ..+.++++|+++.+ . .+|+|++
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 8999999999999998877763 238999999 8899998875 34789999998732 1 2399987
Q ss_pred chh------hhcCC-hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 86 KWI------LHDWS-DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 86 ~~~------l~~~~-~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
-=. -..+. ..+...++..+.++|+|||.+++...
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 211 11111 34556899999999999999999664
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00026 Score=55.77 Aligned_cols=103 Identities=22% Similarity=0.261 Sum_probs=62.5
Q ss_pred CCCeEEEecCCcChHHHHHHh--------h-------CCCCeEEEeech--hHhhhCCCCC------------------C
Q 030025 21 HIKQLVDVGGSLGNTLKAITS--------K-------YPHIKGINFDLP--HVIQHSPEYP------------------G 65 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~--------~-------~~~~~~~~~D~~--~~~~~a~~~~------------------~ 65 (184)
+..+|+|+|||+|.++..+.. + .|+.++..-|+| ++-...+..+ +
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 467899999999987755532 1 145777777752 1111111110 1
Q ss_pred ---ceEEEcccCc-cCCCC--CEEEechhhhcCCh--HH----------------------------------HHHHHHH
Q 030025 66 ---VKHVGGDMFQ-SVPNG--DAILIKWILHDWSD--EH----------------------------------CLKLLKN 103 (184)
Q Consensus 66 ---i~~~~~d~~~-~~~~~--D~i~~~~~l~~~~~--~~----------------------------------~~~~l~~ 103 (184)
+.-+.+.+.. -+|.. +++++++++|+++. ++ -..+|+-
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1223456665 56765 99999999999862 11 1123333
Q ss_pred HHhhCCCCcEEEEEeeecCC
Q 030025 104 CHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 104 ~~~~L~pgG~l~i~~~~~~~ 123 (184)
=.+-|.|||++++.-...++
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhccCcEEEEEEecCCC
Confidence 34458999999998776643
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.3e-05 Score=58.13 Aligned_cols=96 Identities=21% Similarity=0.364 Sum_probs=73.6
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------------CCceEEEcccCccCCC---C
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------------PGVKHVGGDMFQSVPN---G 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------------~~i~~~~~d~~~~~~~---~ 80 (184)
.++..++|-+|+|.|-.++.+.+ +| .-+++-+|+ |.|++.+++. ++++.+..|+.+.... .
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 34668999999999999999887 55 568999999 9999999842 7899999999884322 2
Q ss_pred -CEEEech------hhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 81 -DAILIKW------ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 81 -D~i~~~~------~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
|+||... ++..+ -..++..-+++.|+++|.+++..
T Consensus 366 fD~vIVDl~DP~tps~~rl---YS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRL---YSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ccEEEEeCCCCCCcchhhh---hhHHHHHHHHHhcCcCceEEEec
Confidence 8887732 12111 12368888999999999999843
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.6e-06 Score=55.29 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=56.8
Q ss_pred EEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCc-cCCCC--CEEEechhhhcCChHHHHHHH
Q 030025 25 LVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQ-SVPNG--DAILIKWILHDWSDEHCLKLL 101 (184)
Q Consensus 25 ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~~~~--D~i~~~~~l~~~~~~~~~~~l 101 (184)
.+-||||.=. -+|++..+.+. +++.+.+++.-... .+.+. |+|++.++++|+.-++-...+
T Consensus 6 kv~ig~G~~r-------~npgWi~~d~e---------d~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~al 69 (185)
T COG4627 6 KVKIGAGGKR-------VNPGWIITDVE---------DRPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSAL 69 (185)
T ss_pred EEEEeccccc-------cCCCceeeehh---------cccccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHH
Confidence 4667887532 24666555443 22344444433333 55544 999999999999988889999
Q ss_pred HHHHhhCCCCcEEEEEeee
Q 030025 102 KNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 102 ~~~~~~L~pgG~l~i~~~~ 120 (184)
+++.+.|||||+|-++-+.
T Consensus 70 kechr~Lrp~G~LriAvPd 88 (185)
T COG4627 70 KECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred HHHHHHhCcCcEEEEEcCC
Confidence 9999999999999997654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00013 Score=62.16 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=78.9
Q ss_pred ccHHhHHHHHHHhcCC-CCCCeEEEecCCcChHHHHHHhhC---------------------------------------
Q 030025 4 HTTLVLQKILEAYKGF-EHIKQLVDVGGSLGNTLKAITSKY--------------------------------------- 43 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~-~~~~~ilDiG~G~G~~~~~l~~~~--------------------------------------- 43 (184)
....++..|+.... + ++...++|..||+|.+....+...
T Consensus 173 l~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 173 LKENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CcHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 34567777887766 7 567899999999999998876531
Q ss_pred ---CCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCC---C-CCEEEechhhhc-CC-hHHHHHHHHHHH
Q 030025 44 ---PHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVP---N-GDAILIKWILHD-WS-DEHCLKLLKNCH 105 (184)
Q Consensus 44 ---~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~---~-~D~i~~~~~l~~-~~-~~~~~~~l~~~~ 105 (184)
...+++|+|+ +.+++.|+++ ..+.+..+|+.+ +.+ . .|+|+++-.... +. .++...+++++-
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 1236899999 9999988875 347899999977 322 2 399999766544 22 223334444444
Q ss_pred hhC---CCCcEEEEEee
Q 030025 106 KSI---PEGGKVIVVES 119 (184)
Q Consensus 106 ~~L---~pgG~l~i~~~ 119 (184)
+.+ .||+.+++...
T Consensus 332 ~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 332 RRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHhCCCCeEEEEeC
Confidence 443 48988877554
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.7e-06 Score=55.70 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=64.8
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---------CCceEEEcccCcc---CCC-C-CEEE
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---------PGVKHVGGDMFQS---VPN-G-DAIL 84 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---------~~i~~~~~d~~~~---~~~-~-D~i~ 84 (184)
...+|||+|.| +|..+..++...|...+...|- ...++..++- .++....++.+.. ..+ . |.|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 45889999999 5555555556677778888886 5555544331 2344455555441 222 2 9999
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+..++.. ++-...+.+.++..|+|.|.-++..|
T Consensus 109 aADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 109 AADCLFF--DEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred eccchhH--HHHHHHHHHHHHHHhCcccceeEecC
Confidence 9887753 34445889999999999999777443
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.3e-05 Score=55.67 Aligned_cols=96 Identities=20% Similarity=0.305 Sum_probs=60.4
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhh-------hCCC------CCCceEEEcccCccCCC----C---
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQ-------HSPE------YPGVKHVGGDMFQSVPN----G--- 80 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~-------~a~~------~~~i~~~~~d~~~~~~~----~--- 80 (184)
.-.+.|||||-|.++..++..+|+.-++|.++ -.+-+ .++. ++|+.....+...-.|+ +
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 35689999999999999999999999999986 33322 2222 25666666666553332 1
Q ss_pred -CEEEechhhhcCCh-----HHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 81 -DAILIKWILHDWSD-----EHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 81 -D~i~~~~~l~~~~~-----~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+.+.. ---|.... --...++.+..=+|++||.++...
T Consensus 141 kmff~f-pdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLF-PDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeec-CChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22211 11111110 011257888888999999998754
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.1e-05 Score=52.03 Aligned_cols=90 Identities=24% Similarity=0.305 Sum_probs=39.8
Q ss_pred EEecCCcChHHHHHHhhCCCC---eEEEeec-h---hHhhhCCC---CCCceEEEcccCc---cCC-CC-CEEEechhhh
Q 030025 26 VDVGGSLGNTLKAITSKYPHI---KGINFDL-P---HVIQHSPE---YPGVKHVGGDMFQ---SVP-NG-DAILIKWILH 90 (184)
Q Consensus 26 lDiG~G~G~~~~~l~~~~~~~---~~~~~D~-~---~~~~~a~~---~~~i~~~~~d~~~---~~~-~~-D~i~~~~~l~ 90 (184)
||||+..|..+..+++..+.. +++++|. + ...+..++ ..+++++.++..+ .++ .. |++++-.. |
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-H 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-C
Confidence 699999999999999876444 6899998 6 33333333 2579999999875 233 33 99988553 2
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
..+....-++.+.+.|+|||.+++-|
T Consensus 80 --~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred --CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 12344577999999999999998854
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00017 Score=52.34 Aligned_cols=107 Identities=14% Similarity=0.254 Sum_probs=77.6
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCC-------CCCceEEEcccCccC-
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPE-------YPGVKHVGGDMFQSV- 77 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~- 77 (184)
+.+.+++.+. +++++|||.=||+.+..++...| ..+++.+|+ ++..+.+.. ...+++++++..+.+
T Consensus 64 fl~~li~~~~----ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 64 FLQMLIRLLN----AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLD 139 (237)
T ss_pred HHHHHHHHhC----CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHH
Confidence 3444555554 89999999999999999998864 479999997 655555432 367999999887621
Q ss_pred ---C----CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 78 ---P----NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 78 ---~----~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
+ +. |+++. .++. +.....+.++.+++|+||.+++-...++.
T Consensus 140 ~l~~~~~~~tfDfaFv----DadK-~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFV----DADK-DNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred HHHhcCCCCceeEEEE----ccch-HHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 1 12 88887 3433 34558899999999999999886655544
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.002 Score=46.62 Aligned_cols=119 Identities=10% Similarity=0.099 Sum_probs=87.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCC-C-C-CEEEechhh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVP-N-G-DAILIKWIL 89 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~-~-~-D~i~~~~~l 89 (184)
...++.||||-.+++..++.+.++..+++..|+ +.-++.|.++ ++++...+|-..++. + . |++++.++-
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 445599999999999999999999999999998 7777776543 567888888876443 2 3 888887764
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
. .-...++++-...|+.=-++++.- . -...++++||.+.+|..+.
T Consensus 96 G----~lI~~ILee~~~~l~~~~rlILQP----n---------------------------~~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 96 G----TLIREILEEGKEKLKGVERLILQP----N---------------------------IHTYELREWLSANSYEIKA 140 (226)
T ss_pred H----HHHHHHHHHhhhhhcCcceEEECC----C---------------------------CCHHHHHHHHHhCCceeee
Confidence 3 344578888888886444555511 0 1367788999999999876
Q ss_pred EEeec
Q 030025 170 FVCFF 174 (184)
Q Consensus 170 ~~~~~ 174 (184)
..-..
T Consensus 141 E~ile 145 (226)
T COG2384 141 ETILE 145 (226)
T ss_pred eeeec
Confidence 65443
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00058 Score=53.19 Aligned_cols=150 Identities=20% Similarity=0.160 Sum_probs=77.1
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC----------------CCCeEEEeech--hHhhhCCC----------CCC--ceE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY----------------PHIKGINFDLP--HVIQHSPE----------YPG--VKH 68 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~----------------~~~~~~~~D~~--~~~~~a~~----------~~~--i~~ 68 (184)
.++.-+|+|+||.+|..+..+.+.. |...+..-|+| ++=...+. .++ +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 5677899999999999988776432 33577778852 11111111 123 344
Q ss_pred EEcccCc-cCCCC--CEEEechhhhcCCh-------------------------HH------------HHHHHHHHHhhC
Q 030025 69 VGGDMFQ-SVPNG--DAILIKWILHDWSD-------------------------EH------------CLKLLKNCHKSI 108 (184)
Q Consensus 69 ~~~d~~~-~~~~~--D~i~~~~~l~~~~~-------------------------~~------------~~~~l~~~~~~L 108 (184)
+.+.+.. -+|.. |++++++++||++. ++ ...+|+.=.+-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 6688877 56765 99999999999841 11 112222223458
Q ss_pred CCCcEEEEEeeecCCCCCCCc--cccchhhhhh-Hhhhh------------CCCccccCHHHHHHHHHHcC-Ccee
Q 030025 109 PEGGKVIVVESVLPELPENGT--HSKINSLADV-LVMTQ------------YPGGKERTKHEFTTLATEAG-FSGI 168 (184)
Q Consensus 109 ~pgG~l~i~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~------------~~~~~~~~~~~~~~~l~~aG-f~~i 168 (184)
+|||++++.-...++...... ......+... .-+.. ......++.+|+.+.+++.| |++.
T Consensus 174 v~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~ 249 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIE 249 (334)
T ss_dssp EEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEE
T ss_pred ccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEE
Confidence 999999998877665211110 0001111111 11110 01123459999999999988 5443
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.2e-05 Score=52.53 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=41.8
Q ss_pred eEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc
Q 030025 24 QLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ 75 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~ 75 (184)
+++|+|||+|.++..+++..+..+++++|. +.+.+.+++. +++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999998889999998 8888766553 346666655543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.4e-05 Score=54.84 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=75.5
Q ss_pred ccHHhHHHHHHHhcCC-CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccC
Q 030025 4 HTTLVLQKILEAYKGF-EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMF 74 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~-~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~ 74 (184)
.+..+...+.+.+... -.+.++||+=||||.++...+++. ..+++.+|. +..+...+++ +++..+..|..
T Consensus 24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~ 102 (183)
T PF03602_consen 24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAF 102 (183)
T ss_dssp SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHH
T ss_pred CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHH
Confidence 3456667777777622 368999999999999999999986 348899998 7777666654 35888888976
Q ss_pred cc---C---CCC-CEEEechhhhcCChHHHHHHHHHHH--hhCCCCcEEEEEe
Q 030025 75 QS---V---PNG-DAILIKWILHDWSDEHCLKLLKNCH--KSIPEGGKVIVVE 118 (184)
Q Consensus 75 ~~---~---~~~-D~i~~~~~l~~~~~~~~~~~l~~~~--~~L~pgG~l~i~~ 118 (184)
.. . ... |+|++.=.... ... ...+++.+. .+|+++|.+++-.
T Consensus 103 ~~l~~~~~~~~~fDiIflDPPY~~-~~~-~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 103 KFLLKLAKKGEKFDIIFLDPPYAK-GLY-YEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp HHHHHHHHCTS-EEEEEE--STTS-CHH-HHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHHhhcccCCCceEEEECCCccc-chH-HHHHHHHHHHCCCCCCCEEEEEEe
Confidence 51 1 223 99988654443 221 246777776 7899998877744
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00036 Score=50.16 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=62.3
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHh---hC-CCCeEEEeec--hhHhhhCCCC----CCceEEEcccCcc-
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITS---KY-PHIKGINFDL--PHVIQHSPEY----PGVKHVGGDMFQS- 76 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~---~~-~~~~~~~~D~--~~~~~~a~~~----~~i~~~~~d~~~~- 76 (184)
..++++-.+. +..|+|+|.-.|..+...++ .+ +..+++++|+ +..-..+.+. ++|+++++|..++
T Consensus 23 ~~qeli~~~k----Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~ 98 (206)
T PF04989_consen 23 AYQELIWELK----PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPE 98 (206)
T ss_dssp HHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTH
T ss_pred HHHHHHHHhC----CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHH
Confidence 4667777776 89999999988877776654 33 7789999997 2222222222 7999999998862
Q ss_pred ----CC----CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 77 ----VP----NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 77 ----~~----~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.. .. -++++..+=|...+- ...|+....+++||+++++.|...
T Consensus 99 ~~~~v~~~~~~~~~vlVilDs~H~~~hv--l~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 99 IVDQVRELASPPHPVLVILDSSHTHEHV--LAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp HHHTSGSS----SSEEEEESS----SSH--HHHHHHHHHT--TT-EEEETSHHH
T ss_pred HHHHHHHhhccCCceEEEECCCccHHHH--HHHHHHhCccCCCCCEEEEEeccc
Confidence 11 12 345555555544433 467888999999999999977654
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.76 E-value=9.8e-05 Score=55.98 Aligned_cols=97 Identities=16% Similarity=0.236 Sum_probs=69.3
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCccC------CCCCEEEe
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQSV------PNGDAILI 85 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~~~------~~~D~i~~ 85 (184)
+.++|||+=|=||.++...+.. ...+++.+|. ..+++.++++ .+++++..|+++.+ ...|+||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4789999999999999977654 3458999999 7888888764 46889999998722 12399987
Q ss_pred ch---hhhcCC-hHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 86 KW---ILHDWS-DEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 86 ~~---~l~~~~-~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
-= +=..+. ..+..++++.+.++|+|||.|++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 21 111111 2355689999999999999998755
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00032 Score=49.39 Aligned_cols=103 Identities=18% Similarity=0.254 Sum_probs=66.0
Q ss_pred HHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeechhHhhhCCCCCCceEEEc-ccCcc---------CCCC--
Q 030025 14 EAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDLPHVIQHSPEYPGVKHVGG-DMFQS---------VPNG-- 80 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~i~~~~~-d~~~~---------~~~~-- 80 (184)
+++.-+.+..+|||+||..|+++.-..++. |+.-+.|+|+.... ..+++.++++ |+.++ +|+.
T Consensus 62 dKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 62 DKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----PPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred hhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----CCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 455556788999999999999999888885 99999999973221 1246666666 66663 2443
Q ss_pred CEEEechhh--------hcCC-hHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 81 DAILIKWIL--------HDWS-DEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 81 D~i~~~~~l--------~~~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
|+|++-..- .|.. -+-+..++.-....++|+|.++.--+.
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 888773321 1110 111122333344567899999985543
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00034 Score=50.32 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=74.8
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-----CCceEEEcccCc---c
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-----PGVKHVGGDMFQ---S 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-----~~i~~~~~d~~~---~ 76 (184)
-+.+.....+.+ ..+.++||+||=|-|-....+-++-|.-+++.--.++++++.+.. .||....+--.+ .
T Consensus 87 EtpiMha~A~ai--~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~ 164 (271)
T KOG1709|consen 87 ETPIMHALAEAI--STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT 164 (271)
T ss_pred hhHHHHHHHHHH--hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc
Confidence 334444455554 377899999999999988888777766555544338888877664 667666553333 3
Q ss_pred CCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 77 VPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 77 ~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+++. |-|+.-.--.+ .++...+.+.+.++|||+|++-.-.
T Consensus 165 L~d~~FDGI~yDTy~e~--yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 165 LPDKHFDGIYYDTYSEL--YEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred ccccCcceeEeechhhH--HHHHHHHHHHHhhhcCCCceEEEec
Confidence 4443 88876433232 2466789999999999999986643
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00022 Score=52.35 Aligned_cols=99 Identities=17% Similarity=0.368 Sum_probs=75.9
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCC----CeEEEeec-hhHhhh-----CCCCCCc--eEEEcccCc---cCCCC---
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPH----IKGINFDL-PHVIQH-----SPEYPGV--KHVGGDMFQ---SVPNG--- 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~----~~~~~~D~-~~~~~~-----a~~~~~i--~~~~~d~~~---~~~~~--- 80 (184)
.-+..+.+|+|+|+..-++.+...+.. .+++.+|+ ...++. +++++.+ .-+++|+.. ..|..
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE
Confidence 334789999999999999988887655 79999998 444432 2345654 446778765 33443
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
=.++...++.++.+.++..+|..+...|+||-.+++.
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 3446788999999999999999999999999999885
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00023 Score=58.86 Aligned_cols=84 Identities=7% Similarity=0.067 Sum_probs=53.3
Q ss_pred cHHhHHHHHHHhcCC-C-----CCCeEEEecCCcChHHHHHHhhCC--------CCeEEEeec-hhHhhhCCCC----C-
Q 030025 5 TTLVLQKILEAYKGF-E-----HIKQLVDVGGSLGNTLKAITSKYP--------HIKGINFDL-PHVIQHSPEY----P- 64 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~-~-----~~~~ilDiG~G~G~~~~~l~~~~~--------~~~~~~~D~-~~~~~~a~~~----~- 64 (184)
...+++.|++.+... . ...+|||.|||+|.++..++.+.+ ...+.++|+ +.++..++.. .
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~ 88 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL 88 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC
Confidence 345666666655211 1 446999999999999999987753 257899998 7777766542 2
Q ss_pred -CceEEEcccCc-c-------CCCCCEEEechh
Q 030025 65 -GVKHVGGDMFQ-S-------VPNGDAILIKWI 88 (184)
Q Consensus 65 -~i~~~~~d~~~-~-------~~~~D~i~~~~~ 88 (184)
.+.....|... . .+..|+|+.+=.
T Consensus 89 ~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 89 LEINVINFNSLSYVLLNIESYLDLFDIVITNPP 121 (524)
T ss_pred CCceeeecccccccccccccccCcccEEEeCCC
Confidence 34455555432 1 112399988543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0013 Score=49.90 Aligned_cols=151 Identities=12% Similarity=0.207 Sum_probs=90.6
Q ss_pred HhHHHHHHHhcC---CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEee----c-h-hHhhhCCCC--------------
Q 030025 7 LVLQKILEAYKG---FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFD----L-P-HVIQHSPEY-------------- 63 (184)
Q Consensus 7 ~~~~~l~~~~~~---~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D----~-~-~~~~~a~~~-------------- 63 (184)
.++..+-+.+++ -....+||--|||.|.++..++...+.+++--+. + + -++...+..
T Consensus 133 pii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn 212 (369)
T KOG2798|consen 133 PIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSN 212 (369)
T ss_pred hHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccc
Confidence 445555555552 1134689999999999999999887666554333 1 1 111111110
Q ss_pred -------------------------CCceEEEcccCc--cCCC---C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCc
Q 030025 64 -------------------------PGVKHVGGDMFQ--SVPN---G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGG 112 (184)
Q Consensus 64 -------------------------~~i~~~~~d~~~--~~~~---~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG 112 (184)
.....-.+|+.+ .-++ . |+|+.++.+. ......+.++.+.+.|||||
T Consensus 213 ~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GG 290 (369)
T KOG2798|consen 213 SLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGG 290 (369)
T ss_pred ccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCc
Confidence 123334577776 2222 2 8887765444 23455678999999999999
Q ss_pred EEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 113 KVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 113 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
+++=..+..=+.......+ ...+-..+.+++..+.+..||++++...
T Consensus 291 vWiNlGPLlYHF~d~~g~~-------------~~~siEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 291 VWINLGPLLYHFEDTHGVE-------------NEMSIELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred EEEeccceeeeccCCCCCc-------------ccccccccHHHHHHHHHhcCcEEEEeee
Confidence 9886655432111100000 0112345889999999999999987653
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00028 Score=49.98 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=69.1
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCCCCCEEEechhhhcC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVPNGDAILIKWILHDW 92 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~~~D~i~~~~~l~~~ 92 (184)
.=+.++|||+|+|+|-.+...++.. ...++..|+ +......+-+ -++.+...|..-+-+..|+++...+++.-
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 4467999999999999998777664 346666776 5555544433 24677777766532333999999998854
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
....+++.-..++...|-.+++.++..+.
T Consensus 156 --~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 156 --TEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred --hHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 34457788555555666677777766554
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00022 Score=54.48 Aligned_cols=151 Identities=17% Similarity=0.119 Sum_probs=97.7
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC---------CCceEEEcccCc-cCCC----------
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY---------PGVKHVGGDMFQ-SVPN---------- 79 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~---------~~i~~~~~d~~~-~~~~---------- 79 (184)
.....|+-+|||--.-...+-.. +.+++..+|.|+.++.-++. .+.+++..|+.+ +++.
T Consensus 91 ~g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 91 AGIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred hcccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 34789999999988776554332 25899999998887654432 268999999994 4421
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCc-cccchhhhhhHhhhhCCCccccCHHHHH
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGT-HSKINSLADVLVMTQYPGGKERTKHEFT 157 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
. -++++.+++.+++.++..++|+.+...+.||..++.............. .........................++.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~ 249 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIE 249 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHH
Confidence 1 5889999999999999899999999999999888875531111110000 0000011100000000011123589999
Q ss_pred HHHHHcCCceeEEE
Q 030025 158 TLATEAGFSGIRFV 171 (184)
Q Consensus 158 ~~l~~aGf~~i~~~ 171 (184)
.++.+.||......
T Consensus 250 ~~l~~~g~~~~~~~ 263 (297)
T COG3315 250 TWLAERGWRSTLNR 263 (297)
T ss_pred HHHHhcCEEEEecC
Confidence 99999999877653
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00022 Score=53.67 Aligned_cols=95 Identities=14% Similarity=0.231 Sum_probs=58.4
Q ss_pred CCCeEEEecCCcChHHHHHHhh--CCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCc---cCCCCCEEEec
Q 030025 21 HIKQLVDVGGSLGNTLKAITSK--YPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQ---SVPNGDAILIK 86 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~--~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~---~~~~~D~i~~~ 86 (184)
.+++|+=||||.=-+|..+... .+.+.++++|. +.+.+.+++. .++.|+.+|..+ +...+|+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 3469999999977665555543 36788999999 8888887652 579999999876 23444999886
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
....- ..++..++|+.+.+.++||..+++
T Consensus 200 alVg~-~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 200 ALVGM-DAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEE
T ss_pred hhccc-ccchHHHHHHHHHhhCCCCcEEEE
Confidence 66653 223446899999999999998887
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.65 E-value=3.7e-05 Score=53.32 Aligned_cols=61 Identities=15% Similarity=0.350 Sum_probs=46.3
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc---CC--C-CCEEEe
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS---VP--N-GDAILI 85 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~---~~--~-~D~i~~ 85 (184)
..|+|+.||.|..+..+++.+ .+++++|+ +..++.++.+ .++.++.+|+.+. +. . .|+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 369999999999999999986 47899998 8888888764 5899999999872 22 2 388876
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0006 Score=53.38 Aligned_cols=114 Identities=10% Similarity=0.046 Sum_probs=83.3
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC--------------------------------C-----
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH--------------------------------I----- 46 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~--------------------------------~----- 46 (184)
....++..|+..-. +.++..++|-=||+|.++...+...++ .
T Consensus 175 LketLAaAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 175 LKETLAAAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred chHHHHHHHHHHcC-CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 44567777777766 888899999999999999998877642 1
Q ss_pred --eEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c--CCCCCEEEechhhhc-CChHHHH-----HHHHHHHhh
Q 030025 47 --KGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S--VPNGDAILIKWILHD-WSDEHCL-----KLLKNCHKS 107 (184)
Q Consensus 47 --~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~--~~~~D~i~~~~~l~~-~~~~~~~-----~~l~~~~~~ 107 (184)
.++|+|+ +.+++.|+.+ ..|+|.++|+.+ . +...|+|||+-.... +++++.. .+.+.+++.
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 2779999 9999998875 469999999987 2 223399999766554 4443222 344566677
Q ss_pred CCCCcEEEEEe
Q 030025 108 IPEGGKVIVVE 118 (184)
Q Consensus 108 L~pgG~l~i~~ 118 (184)
++--+.++++.
T Consensus 334 ~~~ws~~v~tt 344 (381)
T COG0116 334 LAGWSRYVFTT 344 (381)
T ss_pred hcCCceEEEEc
Confidence 77777777754
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00027 Score=55.73 Aligned_cols=91 Identities=11% Similarity=0.098 Sum_probs=70.2
Q ss_pred CeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC------CCceEEEcccCccC---CC-CCEEEechhhh
Q 030025 23 KQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSV---PN-GDAILIKWILH 90 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~---~~-~D~i~~~~~l~ 90 (184)
.+|||.-||+|..+..++++.+ ...++.+|+ +.+++.++++ .++.+...|+.... .. .|+|.+.- +.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 5899999999999999999853 358999999 8888877664 35778888887622 22 39998843 32
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.+ ..+++.+.+.+++||.|.++-.
T Consensus 125 ---s~--~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 125 ---TP--APFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred ---Cc--HHHHHHHHHhcccCCEEEEEec
Confidence 22 2589999999999999999743
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.6e-05 Score=57.37 Aligned_cols=114 Identities=18% Similarity=0.362 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCe-EEEeechhHhhhC----CCC---CCceEEEcccCc---cC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIK-GINFDLPHVIQHS----PEY---PGVKHVGGDMFQ---SV 77 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~a----~~~---~~i~~~~~d~~~---~~ 77 (184)
.+++...-+++. +++|||+|.|.|.-..++-.-+|..+ ++.+..+.++... ..+ ........|+.. ++
T Consensus 102 L~~L~~~~~dfa-pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~l 180 (484)
T COG5459 102 LDELQKRVPDFA-PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSL 180 (484)
T ss_pred HHHHHHhCCCcC-cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCC
Confidence 334444444343 45699999998877766666666542 3333332222111 111 111222223321 45
Q ss_pred CCCCEEEechhhhcCC----hHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 78 PNGDAILIKWILHDWS----DEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 78 ~~~D~i~~~~~l~~~~----~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
|..|.+.+..+++.+- ..+....++.+..++.|||.|+|.|...+.
T Consensus 181 p~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 181 PAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred CccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 5557666666666542 223345899999999999999999975543
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00011 Score=54.19 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=64.7
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCCCC--CEEEechhhh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVPNG--DAILIKWILH 90 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~~~--D~i~~~~~l~ 90 (184)
.+.+.+|+|||||.=-++.......+..+|++.|+ +.+.+..+.. .+.++...|.....+.. |+..+.=+++
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 44689999999999999998888888899999999 8777766543 67788888998844433 9999988888
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.+.......-++ +.+.++ .=.++++-+.
T Consensus 183 ~le~q~~g~g~~-ll~~~~-~~~~vVSfPt 210 (251)
T PF07091_consen 183 CLERQRRGAGLE-LLDALR-SPHVVVSFPT 210 (251)
T ss_dssp HHHHHSTTHHHH-HHHHSC-ESEEEEEEES
T ss_pred HHHHHhcchHHH-HHHHhC-CCeEEEeccc
Confidence 776544322233 333332 2235554443
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00079 Score=54.10 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=72.5
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc--c
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ--S 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~--~ 76 (184)
..++...++++. ..+..+++|+=||.|.++..++++ ..+++|+++ +.+++.|+++ .|++|+.+|.++ +
T Consensus 279 ekl~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 279 EKLYETALEWLE-LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHHHh-hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence 345666677776 777889999999999999999976 468999999 8898888764 569999999987 2
Q ss_pred -CC--CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 77 -VP--NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 77 -~~--~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
+. .. |+|+..=.=--.. + .+++.+.+ ++|...+++
T Consensus 356 ~~~~~~~~d~VvvDPPR~G~~-~---~~lk~l~~-~~p~~IvYV 394 (432)
T COG2265 356 AWWEGYKPDVVVVDPPRAGAD-R---EVLKQLAK-LKPKRIVYV 394 (432)
T ss_pred hccccCCCCEEEECCCCCCCC-H---HHHHHHHh-cCCCcEEEE
Confidence 21 12 9998832211111 1 34555544 456666666
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00018 Score=57.82 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=54.2
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ 75 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~ 75 (184)
-++.-+-+++. ++.+..++|+-||||.++..+++.. .+++|+++ ++.++.|++. .|++|+++.+++
T Consensus 370 vLys~i~e~~~-l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 370 VLYSTIGEWAG-LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred HHHHHHHHHhC-CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 34555566666 8899999999999999999888875 58899998 8899888875 579999996666
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00013 Score=57.31 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=48.5
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMF 74 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~ 74 (184)
..+++.+++.++ ..+. +|||+=||+|.++..+++.. .+++|++. +.+++.|+++ .|++|..++..
T Consensus 183 ~~l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 183 EKLYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp HHHHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SH
T ss_pred HHHHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeecc
Confidence 455667777777 5544 89999999999999999886 48999999 8999888764 67899877653
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0022 Score=45.48 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=76.8
Q ss_pred ccHHhHHHHHHHhcC-CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccC
Q 030025 4 HTTLVLQKILEAYKG-FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMF 74 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~-~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~ 74 (184)
..+.+...+.+.+.. .=...++||+=+|+|.++...+++.- .+++.+|. .......+++ .++..+..|+.
T Consensus 25 T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~ 103 (187)
T COG0742 25 TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL 103 (187)
T ss_pred CchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH
Confidence 345666777777763 24678999999999999999999963 47888886 5555555443 67888888887
Q ss_pred c---cCC-C--CCEEEechhhhc-CChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 75 Q---SVP-N--GDAILIKWILHD-WSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 75 ~---~~~-~--~D~i~~~~~l~~-~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. ..+ . .|+|++-=.++. +.+.+..-..-.-..+|+|+|.+++-.
T Consensus 104 ~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 104 RALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred HHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 4 111 2 399998666652 222222222223567899999988844
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.003 Score=46.36 Aligned_cols=97 Identities=11% Similarity=0.148 Sum_probs=71.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-----hhHhhhCCCCCCceEEEcccCccCC------CCCEEEec
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-----PHVIQHSPEYPGVKHVGGDMFQSVP------NGDAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-----~~~~~~a~~~~~i~~~~~d~~~~~~------~~D~i~~~ 86 (184)
+++..+||=+|+++|.....+..- -|+-.+.+++. .+.+..|++++|+-.+.-|+..|.. --|+|++.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaD 233 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFAD 233 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEecc
Confidence 678899999999999998888776 46767777763 3677888999999999999987532 12777663
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
-+ +++++.-+.=++...||+||.++++-.
T Consensus 234 va----qpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 234 VA----QPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred CC----CchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 22 223333444567778999999998543
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0072 Score=47.54 Aligned_cols=105 Identities=16% Similarity=0.203 Sum_probs=69.2
Q ss_pred HHhcCCCCCCeEEEecCCcChHHHHHHhhCCC--CeEEEeec-hhHhhhCCCC------CCceEEEcccCc---cCCC--
Q 030025 14 EAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH--IKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ---SVPN-- 79 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~--~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~---~~~~-- 79 (184)
..+. ..+..+|||..++-|.=|..+++.-++ ..++++|. +.-++..+++ .++.....|... ..+.
T Consensus 150 ~~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 150 LVLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred HHcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccC
Confidence 3444 678899999999999999999998654 56689997 5444444332 446667766543 1111
Q ss_pred -CCEEEe------chhhhc-------CChH-------HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 80 -GDAILI------KWILHD-------WSDE-------HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 80 -~D~i~~------~~~l~~-------~~~~-------~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.|.|++ .++++- +... -..++|+.+.+.|||||.|+.++=
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 366654 223311 1111 124789999999999999998663
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0011 Score=50.73 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=58.3
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ 75 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~ 75 (184)
-+.+++++.+. ..+++.++|.=+|.|..+..+++..++.+++++|. +.+++.+++. .++.++++++.+
T Consensus 7 Vll~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 7 VLLDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred hhHHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 46788899988 77888999999999999999999987799999999 8898887653 478888887765
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0012 Score=51.16 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=76.2
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc--cC-CCCCEEEechh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ--SV-PNGDAILIKWI 88 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~--~~-~~~D~i~~~~~ 88 (184)
..+.+|||.=+|.|.++..+++.... +++++|+ |.+++..+++ ..+..+.+|... +. +.+|-|++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 35899999999999999999997543 4999999 9888877664 348899999987 22 33599999665
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
-. +.+++..+.+.+++||.+-..+...++
T Consensus 266 ~~------a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 KS------AHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred Cc------chhhHHHHHHHhhcCcEEEEEeccchh
Confidence 32 236788899999999999998766544
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0013 Score=47.90 Aligned_cols=98 Identities=22% Similarity=0.354 Sum_probs=68.5
Q ss_pred HhcCCCCCCeEEEecCCcChHHHHHHhhC-CCC--------eEEEeechhHhhhCCCCCCceEEEcccCcc---------
Q 030025 15 AYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHI--------KGINFDLPHVIQHSPEYPGVKHVGGDMFQS--------- 76 (184)
Q Consensus 15 ~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~--------~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~--------- 76 (184)
.+..+....+++|+....|.++.-+.++. ..+ .++.+|+..|... ++|.-+++|+.++
T Consensus 35 ef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 35 EFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----EGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----CceEEeecccCCHhHHHHHHHH
Confidence 33335677899999999999999888773 211 2899998555433 7899999999872
Q ss_pred CCC--CCEEEechh-----hhcCC----hHHHHHHHHHHHhhCCCCcEEEE
Q 030025 77 VPN--GDAILIKWI-----LHDWS----DEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 77 ~~~--~D~i~~~~~-----l~~~~----~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
++. +|+|+|-.+ +|.+. .+-....|.-...+|||||.++-
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 333 399999654 55443 11222456666788999999875
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0014 Score=50.15 Aligned_cols=68 Identities=25% Similarity=0.292 Sum_probs=53.1
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ 75 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~ 75 (184)
-+.+++++.+. ..+++..+|.=-|.|..+..+++++|+++++++|. +.+++.+++. +++.++..++.+
T Consensus 7 Vll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 7 VLLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp TTHHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred ccHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 46788999998 88899999999999999999999999999999999 9999777654 578888887764
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0039 Score=44.99 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=69.7
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC--CeEEEeec-hhHhhhCCCC------------------
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH--IKGINFDL-PHVIQHSPEY------------------ 63 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~--~~~~~~D~-~~~~~~a~~~------------------ 63 (184)
+..+.+.-++.++ -+.+-++.|-.||.|+++.-+.-.+.. ..+.+.|+ +.+++.|+++
T Consensus 36 AsEi~qR~l~~l~-~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~ 114 (246)
T PF11599_consen 36 ASEIFQRALHYLE-GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRE 114 (246)
T ss_dssp HHHHHHHHHCTSS-S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc-CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHH
Confidence 3444555555555 556779999999999998877766533 46888898 8899888663
Q ss_pred ------------------------------CCceEEEcccCccC-------CCC-CEEEechhhhc---CC----hHHHH
Q 030025 64 ------------------------------PGVKHVGGDMFQSV-------PNG-DAILIKWILHD---WS----DEHCL 98 (184)
Q Consensus 64 ------------------------------~~i~~~~~d~~~~~-------~~~-D~i~~~~~l~~---~~----~~~~~ 98 (184)
......+.|++++. +.. |+|+.-....+ |. ..-..
T Consensus 115 ~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~ 194 (246)
T PF11599_consen 115 LYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVA 194 (246)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHH
Confidence 12557888888732 223 99988655444 32 23345
Q ss_pred HHHHHHHhhCCCCcEEEEEe
Q 030025 99 KLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 99 ~~l~~~~~~L~pgG~l~i~~ 118 (184)
.+|..+.++|.+++++.+++
T Consensus 195 ~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 195 QMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHHHHCCS-TT-EEEEEE
T ss_pred HHHHHHHhhCCCCcEEEEec
Confidence 89999999996666666644
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0017 Score=46.14 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=60.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC---------CCceEEEcccCc-cC----------CCC
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY---------PGVKHVGGDMFQ-SV----------PNG 80 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~---------~~i~~~~~d~~~-~~----------~~~ 80 (184)
....|+.+|||.-....++....+++++..+|.|++++.-++. .+.+++..|+.+ .+ ++.
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 3459999999999999999888778999999998777654442 236789999986 21 122
Q ss_pred -CEEEechhhhcCChHHHHHHHHHH
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNC 104 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~ 104 (184)
-++++.+++.+++.++...+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 678889999999988877887765
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0059 Score=49.14 Aligned_cols=97 Identities=23% Similarity=0.242 Sum_probs=71.6
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhC-----CCCCCceEEEcccCc-cCCCC--CEEEechhhhcCC
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHS-----PEYPGVKHVGGDMFQ-SVPNG--DAILIKWILHDWS 93 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a-----~~~~~i~~~~~d~~~-~~~~~--D~i~~~~~l~~~~ 93 (184)
-+++.+|||...++..+-+.. .-.++.+|. +..++.. ++++...++..|+.. .++.. |+++--+.++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 499999999999998887763 235677776 4333322 344778999999988 67654 9999999998863
Q ss_pred -hHH-------HHHHHHHHHhhCCCCcEEEEEeee
Q 030025 94 -DEH-------CLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 94 -~~~-------~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+++ ....+.++.++|+|||+++.....
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 222 124678999999999999887763
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.033 Score=42.48 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=94.8
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC--CCCeEEEeechhHhhhCCC----C------------------------CCceE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY--PHIKGINFDLPHVIQHSPE----Y------------------------PGVKH 68 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~~~~~~~a~~----~------------------------~~i~~ 68 (184)
......|+.+|||.-.....|...+ +.+.++.+|.|..+++--. . ++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4577899999999999999999887 7789999997544432110 0 23444
Q ss_pred EEcccCc--cC----CC-----C--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchh
Q 030025 69 VGGDMFQ--SV----PN-----G--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINS 135 (184)
Q Consensus 69 ~~~d~~~--~~----~~-----~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~ 135 (184)
...|+.+ .+ .. . -++++..++.++++++...+++-+.+.. |.+.++..|...+......
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F-~~a~fv~YEQi~~~D~Fg~------- 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKF-ENAHFVNYEQINPNDRFGK------- 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhC-CcccEEEEeccCCCChHHH-------
Confidence 5555553 11 11 1 3567788999999988889999998887 4566677777765542211
Q ss_pred hhhhHhhhh-C--CCc-cccCHHHHHHHHHHcCCceeEEEe
Q 030025 136 LADVLVMTQ-Y--PGG-KERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 136 ~~~~~~~~~-~--~~~-~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
.+-...... . .+. ...|.+..++.|.++||+-+....
T Consensus 237 vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~D 277 (335)
T KOG2918|consen 237 VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVD 277 (335)
T ss_pred HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhh
Confidence 111000000 0 011 234889999999999999876653
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0061 Score=46.43 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=71.2
Q ss_pred HHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc----CCC-
Q 030025 13 LEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS----VPN- 79 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~----~~~- 79 (184)
...+. ..+...|||.+++.|.-+..+++... ...+++.|. +.-+...+++ .++.....|..+. .+.
T Consensus 78 ~~~L~-~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 78 ALALD-PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp HHHHT-TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTT
T ss_pred ccccc-ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccc
Confidence 34455 66788999999999999999999865 679999997 5544444332 4566666776652 222
Q ss_pred CCEEEe------chhhhcCCh--------------HHHHHHHHHHHhhC----CCCcEEEEEe
Q 030025 80 GDAILI------KWILHDWSD--------------EHCLKLLKNCHKSI----PEGGKVIVVE 118 (184)
Q Consensus 80 ~D~i~~------~~~l~~~~~--------------~~~~~~l~~~~~~L----~pgG~l~i~~ 118 (184)
.|.|++ ..++..-++ .-..++|+.+.+.+ ||||+++.+.
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 277755 222222211 11236899999999 9999999865
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.005 Score=41.81 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=74.1
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~ 76 (184)
..-++.+++.++ -.+.++.+|+|+|.|.+....++.. -...+|+++ |-.+..++-+ .+..|..-|+++ +
T Consensus 58 teQv~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d 135 (199)
T KOG4058|consen 58 TEQVENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD 135 (199)
T ss_pred HHHHHHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc
Confidence 344566677777 5667899999999999998777754 345688888 7666665542 568888999998 7
Q ss_pred CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 77 VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 77 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
+.++..++++.+-.-++ .+-.++..-++.|-+++-.-+-.|.
T Consensus 136 l~dy~~vviFgaes~m~-----dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 136 LRDYRNVVIFGAESVMP-----DLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ccccceEEEeehHHHHh-----hhHHHHHhhCcCCCeEEEEecCCCc
Confidence 76663333333322222 3455666677778787775554444
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0035 Score=43.13 Aligned_cols=100 Identities=11% Similarity=0.071 Sum_probs=62.0
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-CCc-eEEEcccCccC---CCC-CEEEechhhhcCC--
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-PGV-KHVGGDMFQSV---PNG-DAILIKWILHDWS-- 93 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-~~i-~~~~~d~~~~~---~~~-D~i~~~~~l~~~~-- 93 (184)
.++.+-+|+. =.+...++-.+...++..++. ..++.-++. +++ .+...|+.+.+ ... |.+.+.++++|+.
T Consensus 2 ~~~g~V~GS~-~PwvEv~aL~~GA~~iltvey-n~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLG 79 (177)
T PF03269_consen 2 GKSGLVVGSM-QPWVEVMALQHGAAKILTVEY-NKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLG 79 (177)
T ss_pred CceEEEEecC-CchhhHHHHHcCCceEEEEee-cccccCcccccccccccHHHHHHHHHHhhccchhhheechhcccccc
Confidence 4567777777 344455555565667777775 112222221 333 22334444433 223 9999999998872
Q ss_pred -------hHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 94 -------DEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 94 -------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
+.-..+.+.+++++|||||.|++.-+..++
T Consensus 80 RYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 80 RYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred ccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 112236788999999999999998887654
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0027 Score=48.43 Aligned_cols=100 Identities=22% Similarity=0.312 Sum_probs=72.1
Q ss_pred CeEEEecCCcChHHHHHHhhC--------------------CCCeEEEeec-h--hHhhhCCC-----------------
Q 030025 23 KQLVDVGGSLGNTLKAITSKY--------------------PHIKGINFDL-P--HVIQHSPE----------------- 62 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~--------------------~~~~~~~~D~-~--~~~~~a~~----------------- 62 (184)
.+||-||+|.|+-..+++..+ +...++.+|+ + .++.....
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999998877777665 1257888985 2 22222110
Q ss_pred ------CCCceEEEcccCc-cC-------CC-C-CEEEechhhhcC---ChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 63 ------YPGVKHVGGDMFQ-SV-------PN-G-DAILIKWILHDW---SDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 63 ------~~~i~~~~~d~~~-~~-------~~-~-D~i~~~~~l~~~---~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
.-++.|.+.|+.. .. .. . ++|...+++..+ .-.+..++|.++...++||-.|+|+|.-..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 0258999999986 21 11 3 888888888774 355778999999999999999999986443
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.014 Score=45.43 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=66.5
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc---cCccCCC-CCEEEechhhhcC
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD---MFQSVPN-GDAILIKWILHDW 92 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d---~~~~~~~-~D~i~~~~~l~~~ 92 (184)
..+..+|+=+|+| .|..+..+++..- .+++++|. ++-.+.|++...-.++... ..+.... .|+|+..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 7788999999876 6688888888764 89999999 7778888877444444432 2222222 388877544 2
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
..+....+.|++||++++....
T Consensus 240 ------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 240 ------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ------hhHHHHHHHHhcCCEEEEECCC
Confidence 3488889999999999998765
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0031 Score=50.91 Aligned_cols=97 Identities=16% Similarity=0.264 Sum_probs=59.1
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec---hhHhhhCCCCCCceEEEcccCccCCC---C-CEEEechhhhc
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL---PHVIQHSPEYPGVKHVGGDMFQSVPN---G-DAILIKWILHD 91 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~---~~~~~~a~~~~~i~~~~~d~~~~~~~---~-D~i~~~~~l~~ 91 (184)
..+...|+|..+|.|.++.+|.+. | +-+.-+-. +..+..--.+.-+- .--|--+.++. . |+|...++|..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydRGLIG-~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDRGLIG-VYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhcccch-hccchhhccCCCCcchhheehhhhhhh
Confidence 446689999999999999998764 3 22222211 11111111111011 11122223333 2 99999888887
Q ss_pred CChH-HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 92 WSDE-HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 92 ~~~~-~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+.+. +...++=++-|.|+|||.++|-|
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEec
Confidence 6432 45578999999999999999955
|
; GO: 0008168 methyltransferase activity |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0035 Score=45.39 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=45.2
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ 75 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~ 75 (184)
....|+|.-||-|..+..++.++| .++++|+ |.-+..|+.+ ++|.|+++|+.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 467899999999999999988864 6788888 8777888775 689999999987
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0071 Score=49.20 Aligned_cols=111 Identities=19% Similarity=0.260 Sum_probs=76.8
Q ss_pred ccHHhHHHHHHHhcCCCC--CCeEEEecCCcChHHHHHHhh----CCCCeEEEeec-hhHhhhCCCC------CCceEEE
Q 030025 4 HTTLVLQKILEAYKGFEH--IKQLVDVGGSLGNTLKAITSK----YPHIKGINFDL-PHVIQHSPEY------PGVKHVG 70 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~--~~~ilDiG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~ 70 (184)
.++++...+++..++-+. ...|+-+|+|-|-+..+.++. ...++++.++. |+++...+.. .+|+++.
T Consensus 348 Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~ 427 (649)
T KOG0822|consen 348 YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIIS 427 (649)
T ss_pred HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEe
Confidence 456677777777663333 567899999999887766654 34578899987 7766555443 6799999
Q ss_pred cccCc-cCC--CCCEEEechhhhcCCh-HHHHHHHHHHHhhCCCCcEEE
Q 030025 71 GDMFQ-SVP--NGDAILIKWILHDWSD-EHCLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 71 ~d~~~-~~~--~~D~i~~~~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~ 115 (184)
.|+.+ ..| ..|++++. .|.-|++ +-..+.|..+.+.|||+|.-+
T Consensus 428 ~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 428 SDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred ccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 99998 333 23888763 3333332 212267999999999998755
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.02 Score=42.56 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=60.9
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC--------C----CceE--EEcccCc----cCCC-CCE
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY--------P----GVKH--VGGDMFQ----SVPN-GDA 82 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~--------~----~i~~--~~~d~~~----~~~~-~D~ 82 (184)
...|||+|+|+|..+..++. .....++..|.+...+..... + .+.. ..++... -.+. .|+
T Consensus 87 ~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 56799999999966655554 346788888875444333221 1 2222 2222221 1234 499
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
|+.+.++++-...+ .++.-+...|-.+|.+++.-...
T Consensus 166 ilasDvvy~~~~~e--~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 166 ILASDVVYEEESFE--GLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEeeeeecCCcch--hHHHHHHHHHhcCCeEEEEEecc
Confidence 99999998765444 57888888888888666655444
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0041 Score=46.98 Aligned_cols=110 Identities=18% Similarity=0.175 Sum_probs=72.9
Q ss_pred HHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccCc
Q 030025 9 LQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMFQ 75 (184)
Q Consensus 9 ~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~~ 75 (184)
+++++.+++. .+.++.+|-||.|.|.+.+...+.-.--.+..+|+ ...++..+++ +++....+|-..
T Consensus 107 Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~ 186 (337)
T KOG1562|consen 107 YQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL 186 (337)
T ss_pred ceeeeeccccccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH
Confidence 4455555552 44678999999999999998887632235666676 6666666554 679999898765
Q ss_pred ---cCCC-C-CEEEechhhhcCCh--HHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 76 ---SVPN-G-DAILIKWILHDWSD--EHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 76 ---~~~~-~-D~i~~~~~l~~~~~--~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
..+. . |+|+....=-..+. --....+..+.+.|||||+++...
T Consensus 187 fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 187 FLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred HHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 3322 2 99877332111111 011257888999999999998854
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0015 Score=42.01 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=44.2
Q ss_pred CEEEechhhhcC----ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCC-CCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 81 DAILIKWILHDW----SDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL-PENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 81 D~i~~~~~l~~~----~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
|+|+|.++--++ .|+-...+|+++++.|+|||.+++.-..+.+- ......+ .....+.. -...+++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~---~~~~n~~~------i~lrP~~ 73 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSE---EIRENYKS------IKLRPDQ 73 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-H---HHHHHHHH----------GGG
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhH---HHHhHHhc------eEEChHH
Confidence 888887765543 57777899999999999999998833222111 0000000 11111111 1124567
Q ss_pred HHHHHHH--cCCceeEEEee
Q 030025 156 FTTLATE--AGFSGIRFVCF 173 (184)
Q Consensus 156 ~~~~l~~--aGf~~i~~~~~ 173 (184)
+.+.|.+ .||+..+....
T Consensus 74 F~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp HHHHHTSTTT---EEEEE--
T ss_pred HHHHHHhcccceEEEEEccc
Confidence 8888887 59998875544
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.012 Score=46.18 Aligned_cols=114 Identities=14% Similarity=0.279 Sum_probs=80.2
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec----hhHhhhCCC------------CCCceEE
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL----PHVIQHSPE------------YPGVKHV 69 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~----~~~~~~a~~------------~~~i~~~ 69 (184)
......+.+.+. +.+...-.|+|+|.|.....++.......-+|+.+ +++....++ ...+..+
T Consensus 178 ~~ql~si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i 256 (419)
T KOG3924|consen 178 LEQLRSIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI 256 (419)
T ss_pred HHHHHHHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec
Confidence 344667778888 88999999999999999998887765545556653 222222211 1458889
Q ss_pred EcccCcc------CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 70 GGDMFQS------VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 70 ~~d~~~~------~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
++++.++ .+.+++|+++++.. +++.. .=++++..-+++|-+++-.++..+.
T Consensus 257 ~gsf~~~~~v~eI~~eatvi~vNN~~F--dp~L~-lr~~eil~~ck~gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQTEATVIFVNNVAF--DPELK-LRSKEILQKCKDGTRIISSKPLVPR 313 (419)
T ss_pred ccccCCHHHHHHHhhcceEEEEecccC--CHHHH-HhhHHHHhhCCCcceEecccccccc
Confidence 9999873 23458999988765 43333 3355899999999999988887763
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.023 Score=48.43 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=58.0
Q ss_pred CCCeEEEecCCcChHHHHHHhhC-------C-----CCeEEEeec-h---hHhhhCC-----------C----C------
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKY-------P-----HIKGINFDL-P---HVIQHSP-----------E----Y------ 63 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~-------~-----~~~~~~~D~-~---~~~~~a~-----------~----~------ 63 (184)
+.-+|+|+|=|+|.+....++.. | .++++.++. | +.+..+. + +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999999887777544 3 357888884 3 1111110 0 0
Q ss_pred --------C--CceEEEcccCcc---CCC-CCEEEech-hhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 64 --------P--GVKHVGGDMFQS---VPN-GDAILIKW-ILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 64 --------~--~i~~~~~d~~~~---~~~-~D~i~~~~-~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
. .++...+|+.+. +.. .|+++.-. +-..=++=-...+|+.++++++|||++.-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 1 244566777652 222 38887732 11111211234789999999999999875
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.011 Score=37.87 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=26.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL 53 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~ 53 (184)
+...-+|||||.|-+.--|.+. +.++.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 5678999999999999888877 467789995
|
; GO: 0008168 methyltransferase activity |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.066 Score=42.52 Aligned_cols=45 Identities=27% Similarity=0.394 Sum_probs=33.5
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcCh----HHHHHHhhC---CCCeEEEeec
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGN----TLKAITSKY---PHIKGINFDL 53 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~----~~~~l~~~~---~~~~~~~~D~ 53 (184)
..+.|++++. ..+.-+|+|+|.|.|. +...|+++. |..++|+++.
T Consensus 98 aNqaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~ 149 (374)
T PF03514_consen 98 ANQAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGP 149 (374)
T ss_pred hhHHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccC
Confidence 3567888887 6677899999999994 344444442 7789999986
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.13 Score=40.82 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=64.2
Q ss_pred CCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc----cCc---cC-CC-C-CEEEec
Q 030025 19 FEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD----MFQ---SV-PN-G-DAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d----~~~---~~-~~-~-D~i~~~ 86 (184)
+.+..+||.+|||. |..+..+++.....++++++. ++..+.+++...+..+... ..+ .. +. . |+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 66778999999987 889999998875446888887 7777777665333332211 111 11 11 3 777653
Q ss_pred hh---------------hhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 87 WI---------------LHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 87 ~~---------------l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.. ++..+++ ...++++.+.++|+|++++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhccCCEEEEEcC
Confidence 21 1111222 3578999999999999998754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.03 Score=42.59 Aligned_cols=71 Identities=24% Similarity=0.273 Sum_probs=59.8
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC-CeEEEeec-hhHhhhCCCC-----CCceEEEcccCc
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH-IKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ 75 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~ 75 (184)
+..-+.++.++.+. ..+++..+|.==|.|..+..++++++. .+++++|. +.+++.|++. +++.+++..+.+
T Consensus 7 HipVLl~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 7 HIPVLLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred ccchHHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 34457888999998 888899999999999999999999875 45999999 9999998874 578888877654
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.035 Score=42.48 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=43.8
Q ss_pred HHHHHHHhcC-CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEccc----C
Q 030025 9 LQKILEAYKG-FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDM----F 74 (184)
Q Consensus 9 ~~~l~~~~~~-~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~----~ 74 (184)
+.+++..... .+..-++||||+|...+=-.|..+..++++++.|+ +..++.|++. .+|+++...- +
T Consensus 89 i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~ 168 (299)
T PF05971_consen 89 IADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIF 168 (299)
T ss_dssp HHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SST
T ss_pred HHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccc
Confidence 3444444331 22356899999998866544554544899999999 8899888763 3577765432 2
Q ss_pred ccC--C-CC-CEEEechhhhcC
Q 030025 75 QSV--P-NG-DAILIKWILHDW 92 (184)
Q Consensus 75 ~~~--~-~~-D~i~~~~~l~~~ 92 (184)
+.. + +. |+.+|+-.+|.-
T Consensus 169 ~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 169 DGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp TTSTT--S-EEEEEE-----SS
T ss_pred hhhhcccceeeEEecCCccccC
Confidence 211 1 22 888888888753
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.49 Score=33.89 Aligned_cols=111 Identities=18% Similarity=0.204 Sum_probs=77.8
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh----CCCCeEEEeec--hhHhhhCCCCCCceEEEcccCccC----
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK----YPHIKGINFDL--PHVIQHSPEYPGVKHVGGDMFQSV---- 77 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~----~~~~~~~~~D~--~~~~~~a~~~~~i~~~~~d~~~~~---- 77 (184)
..++++-.+. +..|.|+|.-.|..+...+.. ....+++++|+ ...-..|++.+++.|+.++-.++-
T Consensus 60 ~yQellw~~~----P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eq 135 (237)
T COG3510 60 NYQELLWELQ----PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQ 135 (237)
T ss_pred HHHHHHHhcC----CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHH
Confidence 3455555554 789999999988777666543 24468888887 222245555799999999988731
Q ss_pred ----CC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 78 ----PN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 78 ----~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
.+ . -+.+|..+-|+.. .....++-+.++|.-|-++++-|...++.
T Consensus 136 i~~~~~~y~kIfvilDsdHs~~--hvLAel~~~~pllsaG~Y~vVeDs~v~dl 186 (237)
T COG3510 136 IRRLKNEYPKIFVILDSDHSME--HVLAELKLLAPLLSAGDYLVVEDSNVNDL 186 (237)
T ss_pred HHHHhcCCCcEEEEecCCchHH--HHHHHHHHhhhHhhcCceEEEecccccCC
Confidence 12 2 5567777777653 33467888999999999999988776554
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.1 Score=38.90 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=54.0
Q ss_pred CCCCeEEEecCCcChHHHHHH---hhC--CCCeEEEeec-hhHhhhC------------------------------CCC
Q 030025 20 EHIKQLVDVGGSLGNTLKAIT---SKY--PHIKGINFDL-PHVIQHS------------------------------PEY 63 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~---~~~--~~~~~~~~D~-~~~~~~a------------------------------~~~ 63 (184)
.-++.|+|+||=.|..+..++ +.+ +.-++.++|. ..+-+.. .++
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 456899999999998765543 322 3457888884 3222111 001
Q ss_pred ----CCceEEEcccCccCCCC--CEE---EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 64 ----PGVKHVGGDMFQSVPNG--DAI---LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 64 ----~~i~~~~~d~~~~~~~~--D~i---~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+++.++.+.+.+.+|.. +-| .+-.=+ .+.....|+.++..|.|||.+++-|.
T Consensus 153 gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl----YesT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 153 GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL----YESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S----HHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCCcccEEEECCcchhhhccCCCccEEEEEEeccc----hHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 36889999987755433 222 221111 23456899999999999999999553
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.029 Score=37.95 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=48.2
Q ss_pred eEEEeec-hhHhhhCCCC-------CCceEEEcccCc---cCCC-C-CEEEechhhhcCC---------hHHHHHHHHHH
Q 030025 47 KGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ---SVPN-G-DAILIKWILHDWS---------DEHCLKLLKNC 104 (184)
Q Consensus 47 ~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~---~~~~-~-D~i~~~~~l~~~~---------~~~~~~~l~~~ 104 (184)
++.++|+ +++++..+++ .+++++..+-.+ ..+. . |+++.+. .++| .+.....++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5789999 8888877764 468888777665 2444 3 7776643 2332 34556889999
Q ss_pred HhhCCCCcEEEEEee
Q 030025 105 HKSIPEGGKVIVVES 119 (184)
Q Consensus 105 ~~~L~pgG~l~i~~~ 119 (184)
.++|+|||.+.+.-.
T Consensus 79 l~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 79 LELLKPGGIITIVVY 93 (140)
T ss_dssp HHHEEEEEEEEEEE-
T ss_pred HHhhccCCEEEEEEe
Confidence 999999999998653
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.27 Score=38.69 Aligned_cols=96 Identities=21% Similarity=0.166 Sum_probs=66.8
Q ss_pred CCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccC--------c-cCCCC-CEEEech
Q 030025 20 EHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMF--------Q-SVPNG-DAILIKW 87 (184)
Q Consensus 20 ~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~--------~-~~~~~-D~i~~~~ 87 (184)
.+..+|+=+||| .|..+..+++.....+++.+|. +.-++.|++.-........-. . .-+.. |+++-..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 344489999999 6788788888888889999999 888999987533332222111 1 11223 8876644
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
- . ...+..+.+.++|||++++.......
T Consensus 247 G-----~---~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 247 G-----S---PPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred C-----C---HHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 4 1 14689999999999999997765444
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.46 Score=36.76 Aligned_cols=95 Identities=12% Similarity=0.156 Sum_probs=68.1
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc--------ccCc----cCCC-C-CE
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG--------DMFQ----SVPN-G-DA 82 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~--------d~~~----~~~~-~-D~ 82 (184)
++...+||=+|+| .|-.+...++.+...+++.+|+ +.-++.|++. +.+.... ++.+ ..+. . |+
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GATVTDPSSHKSSPQELAELVEKALGKKQPDV 245 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh-CCeEEeeccccccHHHHHHHHHhhccccCCCe
Confidence 6778999999999 6888888888888889999999 9999999885 1111111 1111 1222 2 77
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
.+-..-++ ..++.....+++||++++..+..+
T Consensus 246 ~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 246 TFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred EEEccCch--------HHHHHHHHHhccCCEEEEeccCCC
Confidence 77665554 457778889999999999876544
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.13 Score=38.74 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=31.4
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC-----CCCeEEEeec
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY-----PHIKGINFDL 53 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~-----~~~~~~~~D~ 53 (184)
+.++..++|+|||.|.++.++++.. +...++.+|-
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 6788899999999999999999987 5678999995
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.13 Score=38.23 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCCCC--eEEEecCCcChHHHHHHhhCCCCeEEEeec
Q 030025 10 QKILEAYKGFEHIK--QLVDVGGSLGNTLKAITSKYPHIKGINFDL 53 (184)
Q Consensus 10 ~~l~~~~~~~~~~~--~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~ 53 (184)
+.|+++.. +++.. +|||.=+|+|.-+..++.+ +++++.++.
T Consensus 76 ~~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr 118 (250)
T PRK10742 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLER 118 (250)
T ss_pred cHHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEEC
Confidence 56777777 77766 9999999999999999998 677999995
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.1 Score=41.54 Aligned_cols=60 Identities=12% Similarity=0.167 Sum_probs=50.5
Q ss_pred CCceEEEcccCc---cCCC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 64 PGVKHVGGDMFQ---SVPN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 64 ~~i~~~~~d~~~---~~~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
++++++.+++.+ ..+. . |.++......++++++..+.++++.+.++|||++++=....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 679999999887 2333 3 9999999999999999999999999999999999996654433
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.1 Score=41.11 Aligned_cols=50 Identities=18% Similarity=0.376 Sum_probs=37.4
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHS 60 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a 60 (184)
..+++.+.++.+...++|+|.|-|++++-+.-.+ +..+.++|- ....++|
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra 192 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERA 192 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHH
Confidence 4455555557778999999999999999777666 679999996 3333444
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.19 Score=37.79 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=47.7
Q ss_pred HHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcE
Q 030025 35 TLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGK 113 (184)
Q Consensus 35 ~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~ 113 (184)
+++++.+..+..++++.|. +..++.+.+..-+.-...+ .+.+.+.|+|+.+-.+. ....+++++...+++|+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP~~-----~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVPVS-----AIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S-HH-----HHHHHHHHHHCGS-TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCCHH-----HHHHHHHHhhhhcCCCcE
Confidence 3567777788899999999 7777777655434433333 22344459998865544 445778888888888766
Q ss_pred EE
Q 030025 114 VI 115 (184)
Q Consensus 114 l~ 115 (184)
+.
T Consensus 75 v~ 76 (258)
T PF02153_consen 75 VT 76 (258)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=93.86 E-value=2 Score=31.93 Aligned_cols=125 Identities=13% Similarity=0.025 Sum_probs=66.6
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCCC----C-CEEEechhh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVPN----G-DAILIKWIL 89 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~~----~-D~i~~~~~l 89 (184)
.+++||=+| -.-.++.+++...+..+++++|+ +.+++.-++. -.++.+..|+.+++|. . |++++.=.-
T Consensus 44 ~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy 122 (243)
T PF01861_consen 44 EGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY 122 (243)
T ss_dssp TT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S
T ss_pred cCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC
Confidence 568999998 44456666666666779999998 6666544332 3499999999997664 2 999883221
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
..+-..-++++....||..|-.........+. ......++++.+.+.||.+.+
T Consensus 123 ---T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~------------------------s~~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 123 ---TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA------------------------SPDKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp ---SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--------------------------HHHHHHHHHHHHTS--EEEE
T ss_pred ---CHHHHHHHHHHHHHHhCCCCceEEEEEecCcC------------------------cHHHHHHHHHHHHHCCcCHHH
Confidence 12334578999999998877433322221110 000124677888899998887
Q ss_pred EEee
Q 030025 170 FVCF 173 (184)
Q Consensus 170 ~~~~ 173 (184)
+.+.
T Consensus 176 ii~~ 179 (243)
T PF01861_consen 176 IIPD 179 (243)
T ss_dssp EEEE
T ss_pred HHhh
Confidence 7764
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.31 Score=33.27 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=56.7
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCC-----
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVP----- 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~----- 78 (184)
++...+....... .-.+.|||+|=|.|.+=-.|.+.+|+-++.++|- -.....+ .-+.=.++.+|+.+..+
T Consensus 14 QR~~L~~a~~~v~--~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~-~P~~~~~ilGdi~~tl~~~~~~ 90 (160)
T PF12692_consen 14 QRDCLNWAAAQVA--GLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSS-TPPEEDLILGDIRETLPALARF 90 (160)
T ss_dssp HHHHHHHHHHHTT--T--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG----GGGEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCC-CCchHheeeccHHHHhHHHHhc
Confidence 3444455555554 4458999999999999999999999999999994 1111111 01445778888876222
Q ss_pred -CC-CEEEechhhhcCC--hHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 79 -NG-DAILIKWILHDWS--DEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 79 -~~-D~i~~~~~l~~~~--~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.. -++..-.-.++-. ......+=.-+..+|.|||.++...+..
T Consensus 91 g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 91 GAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp -S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 11 3333322222211 1111123334567789999988866544
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.13 Score=34.12 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=49.3
Q ss_pred CceEEEcccCc---cCCCC-CEEEech-hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhh
Q 030025 65 GVKHVGGDMFQ---SVPNG-DAILIKW-ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADV 139 (184)
Q Consensus 65 ~i~~~~~d~~~---~~~~~-D~i~~~~-~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 139 (184)
.+++..+|+.+ .+... |+|+... +-.-=++--..++|++++++++|||.+.-..
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------- 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------------- 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee---------------------
Confidence 35556666654 12222 7776532 1110011111368999999999999876611
Q ss_pred HhhhhCCCccccCHHHHHHHHHHcCCceeEEEeecCceEEEEEeC
Q 030025 140 LVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
....+++.|+++||.+.+....++--..+.+.|
T Consensus 91 ------------~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 91 ------------SAGAVRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp -------------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred ------------chHHHHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 235578899999999876666555555555443
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=93.33 E-value=1.5 Score=28.69 Aligned_cols=85 Identities=16% Similarity=0.269 Sum_probs=55.1
Q ss_pred CCCeEEEecCCcC-hHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCcc-C--CCC-CEEEechhhhcCChH
Q 030025 21 HIKQLVDVGGSLG-NTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQS-V--PNG-DAILIKWILHDWSDE 95 (184)
Q Consensus 21 ~~~~ilDiG~G~G-~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~-~--~~~-D~i~~~~~l~~~~~~ 95 (184)
..++|+|+|-|.= ..+..|+++ ++.++.+|+.+. .++ .++.++..|+++| . -.+ |+|++. -+++
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSi-----Rppp 81 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSI-----RPPP 81 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeec-----CCCH
Confidence 3569999999866 555556665 478899998222 332 7899999999984 2 233 998883 2555
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+....+=++.+.+ |..++|.-
T Consensus 82 El~~~ildva~aV--ga~l~I~p 102 (129)
T COG1255 82 ELQSAILDVAKAV--GAPLYIKP 102 (129)
T ss_pred HHHHHHHHHHHhh--CCCEEEEe
Confidence 5555555555554 44455543
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.69 Score=35.25 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=56.0
Q ss_pred CCeEEEecCC--cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEE-ccc-CccCCCCCEEEechhhhcCChHH
Q 030025 22 IKQLVDVGGS--LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVG-GDM-FQSVPNGDAILIKWILHDWSDEH 96 (184)
Q Consensus 22 ~~~ilDiG~G--~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~-~d~-~~~~~~~D~i~~~~~l~~~~~~~ 96 (184)
..+|+=+|.| -|.+++.+.+......+++.|. ...++.+.+. ++.... .+. ......+|+|+.+-.+. .
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~d~~~~~~~~~~~~~aD~VivavPi~-----~ 76 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVIDELTVAGLAEAAAEADLVIVAVPIE-----A 76 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-CcccccccchhhhhcccCCEEEEeccHH-----H
Confidence 3567778877 4577777777777788899997 5555555433 222222 121 22333459998866665 4
Q ss_pred HHHHHHHHHhhCCCCcEEE
Q 030025 97 CLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 97 ~~~~l~~~~~~L~pgG~l~ 115 (184)
...+++++...|+||..+.
T Consensus 77 ~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 77 TEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHHHhcccCCCCCEEE
Confidence 4578999999898885543
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.25 Score=38.72 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=31.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC----C----CCeEEEeec-hhHhhh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY----P----HIKGINFDL-PHVIQH 59 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~----~----~~~~~~~D~-~~~~~~ 59 (184)
.+..-.++|+|+|+|.++..+++.. | .+++..++. +...++
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~ 124 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRAR 124 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHH
Confidence 4556789999999999998888653 3 578888887 544443
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.4 Score=33.93 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=56.3
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc-------CC-CC-CEEEech
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS-------VP-NG-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~-~~-D~i~~~~ 87 (184)
+.+..+||..|+| .|..+..+++.. +.+++.++. +...+.+++.. +..+..+-... .+ .. |+++-+.
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELG-ADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhC-CCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 6677899998876 477777778775 467788876 66666554432 22222211111 11 22 7776432
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.. . ..++++.+.|+++|.++....
T Consensus 241 g~-----~---~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 241 GT-----Q---PTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CC-----H---HHHHHHHHHhhcCCEEEEECC
Confidence 11 1 368889999999999998643
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.93 E-value=1 Score=34.67 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=50.1
Q ss_pred CCCeEEEecCCc-C-hHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHH
Q 030025 21 HIKQLVDVGGSL-G-NTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHC 97 (184)
Q Consensus 21 ~~~~ilDiG~G~-G-~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~ 97 (184)
...+|.=||+|. | .++..+.+.....+++++|. +...+.+++..-......+..+.....|+|+..-... ..
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-----~~ 79 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-----AS 79 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-----HH
Confidence 346788898875 2 34444444322247888887 5555555443211111112111233449888755433 23
Q ss_pred HHHHHHHHhhCCCCcEEEE
Q 030025 98 LKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i 116 (184)
..+++++...++||..++.
T Consensus 80 ~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 80 GAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHHhhCCCCCEEEe
Confidence 4567888888888876543
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.6 Score=33.14 Aligned_cols=121 Identities=12% Similarity=0.092 Sum_probs=71.0
Q ss_pred eEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc-cC---CCC-CEEEechhhhcCC---
Q 030025 24 QLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SV---PNG-DAILIKWILHDWS--- 93 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~---~~~-D~i~~~~~l~~~~--- 93 (184)
+++|+-||.|..+..+.+.. --.+.++|. +.+++..+.+ ++. +...|+.+ .. ... |+++.......++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 68999999999988887764 235677888 7777665554 433 56677776 21 223 9998765444332
Q ss_pred -----hHHHHHHHHH---HHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCC
Q 030025 94 -----DEHCLKLLKN---CHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGF 165 (184)
Q Consensus 94 -----~~~~~~~l~~---~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 165 (184)
+++...++.+ +.+.++|. +++.|....-.. .........+.+.|++.||
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~---------------------~~~~~~~~~i~~~l~~~GY 136 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLT---------------------HDNGNTLKVILNTLEELGY 136 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhc---------------------cCchHHHHHHHHHHHhCCc
Confidence 1111223333 33334666 666664321110 0011246778888999998
Q ss_pred ceeE
Q 030025 166 SGIR 169 (184)
Q Consensus 166 ~~i~ 169 (184)
....
T Consensus 137 ~~~~ 140 (275)
T cd00315 137 NVYW 140 (275)
T ss_pred EEEE
Confidence 8543
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=92.60 E-value=1.7 Score=31.66 Aligned_cols=107 Identities=13% Similarity=0.140 Sum_probs=61.6
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcC----hHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLG----NTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ- 75 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G----~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~- 75 (184)
..+++.++..--..+.|+++.|+.| .++...+.+..+.+++.+-. ++.+...++. +-++|+.++..+
T Consensus 29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~ 108 (218)
T PF07279_consen 29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEE 108 (218)
T ss_pred HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHH
Confidence 4567777772335678999976544 33444445566777777754 3333222221 346888888543
Q ss_pred ---cCCCCCEEEechhhhcCChHHHH-HHHHHHHhhCCCCcEEEEEeeecC
Q 030025 76 ---SVPNGDAILIKWILHDWSDEHCL-KLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 76 ---~~~~~D~i~~~~~l~~~~~~~~~-~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
.+...|++++..=.+ +.. ++|+-+. +.|.|-+++......
T Consensus 109 ~~~~~~~iDF~vVDc~~~-----d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 109 VMPGLKGIDFVVVDCKRE-----DFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred HHhhccCCCEEEEeCCch-----hHHHHHHHHhc--cCCCceEEEEecccc
Confidence 233339988855433 333 5666443 556788888665543
|
The function of this family is unknown. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.16 Score=40.84 Aligned_cols=40 Identities=8% Similarity=0.020 Sum_probs=32.1
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY 63 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~ 63 (184)
-.|||||.|||.++.-..... .-.+++++. ..|.+.|++.
T Consensus 68 v~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI 108 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKI 108 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHH
Confidence 468999999999998666655 346889988 8899988873
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.93 Score=37.45 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=68.1
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC----CCeEEEeec-hhHhhhCCCC------C-CceEEEccc
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP----HIKGINFDL-PHVIQHSPEY------P-GVKHVGGDM 73 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~----~~~~~~~D~-~~~~~~a~~~------~-~i~~~~~d~ 73 (184)
+.+.+.|.+-+. ..+..+|+|-.||+|.+.....+... .+.+.|.+. +.....|+-. + .+....+|-
T Consensus 172 ~~v~~liv~~l~-~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dt 250 (489)
T COG0286 172 REVSELIVELLD-PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDT 250 (489)
T ss_pred HHHHHHHHHHcC-CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccc
Confidence 456667777776 45667999999999988877776642 377899997 7666666543 2 233344443
Q ss_pred Cc-cCC----C---CCEEEechhhh--------------------c-C-C-hHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 74 FQ-SVP----N---GDAILIKWILH--------------------D-W-S-DEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 74 ~~-~~~----~---~D~i~~~~~l~--------------------~-~-~-~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
.. +.. . .|.|+++-.+. - + + ..+...++..+...|+|||+.-+.
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 33 221 1 15655533221 0 1 1 112257889999999998865553
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.5 Score=36.46 Aligned_cols=96 Identities=13% Similarity=0.148 Sum_probs=61.9
Q ss_pred CCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc--------------c-------
Q 030025 20 EHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ--------------S------- 76 (184)
Q Consensus 20 ~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~--------------~------- 76 (184)
.++.+|+=+||| .|..+...++.. +++++.+|. +.-++.+++. +.++...|..+ +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 357899999999 566676677766 458999999 8888887765 33332211110 1
Q ss_pred -----CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 77 -----VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 77 -----~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
....|+++.....-.-+.+ ..+.++..+.+||||+++....
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP--~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAP--KLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCc--chHHHHHHHhcCCCCEEEEEcc
Confidence 0123888775543221122 1235999999999999887654
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.51 Score=38.24 Aligned_cols=101 Identities=18% Similarity=0.189 Sum_probs=60.4
Q ss_pred CCCeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCC------CCceEEEc-ccCc---cC--CCC-CEEE
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEY------PGVKHVGG-DMFQ---SV--PNG-DAIL 84 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~-d~~~---~~--~~~-D~i~ 84 (184)
.+..+.|+|+|.|.-.-.+.... ..-.++.||. ..|.....+. .+-.++.. -+.. +. .+. |+++
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 34678899988775554444333 2346788887 5666554332 11111222 1222 22 233 9999
Q ss_pred echhhhcCChH-HHHHHHHHHHh-hCCCCcEEEEEeeec
Q 030025 85 IKWILHDWSDE-HCLKLLKNCHK-SIPEGGKVIVVESVL 121 (184)
Q Consensus 85 ~~~~l~~~~~~-~~~~~l~~~~~-~L~pgG~l~i~~~~~ 121 (184)
+.+.+|+++.. ....+.+++++ ..++|+.+++.+...
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 99999998744 33355555555 478999999987643
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.29 Score=36.61 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=26.3
Q ss_pred CCeEEEecCCcChHHHHHHhhC--------CCCeEEEeec-hhHh
Q 030025 22 IKQLVDVGGSLGNTLKAITSKY--------PHIKGINFDL-PHVI 57 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~--------~~~~~~~~D~-~~~~ 57 (184)
.-+|+|+|+|+|.++..+++.. ..++++.++. +.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~ 63 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR 63 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH
Confidence 4799999999999999998764 2368999997 4433
|
; PDB: 4F3N_A 1ZKD_B. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.6 Score=33.59 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=52.2
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCC-CEEEechhhhcCChHHH
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNG-DAILIKWILHDWSDEHC 97 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~-D~i~~~~~l~~~~~~~~ 97 (184)
+..++|=+||| .|.++..+++......++.+|. +..++.+....-+ |..+..+.. |+|+-.. ..+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i-----~~~~~~~~g~Dvvid~~-----G~~-- 211 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVL-----DPEKDPRRDYRAIYDAS-----GDP-- 211 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcccc-----ChhhccCCCCCEEEECC-----CCH--
Confidence 45678888876 5667777777764444667776 5566555432111 111111223 7776532 222
Q ss_pred HHHHHHHHhhCCCCcEEEEEee
Q 030025 98 LKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..++.+.+.++|+|++++...
T Consensus 212 -~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 212 -SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -HHHHHHHHhhhcCcEEEEEee
Confidence 357888999999999998664
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.67 E-value=1.9 Score=33.62 Aligned_cols=94 Identities=12% Similarity=0.049 Sum_probs=54.0
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChH
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDE 95 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~ 95 (184)
..+..+||=+||| .|..+..++++ ....+++++|. +.-++.+++. +..+...+..+.. ..|+|+=..- .. ..
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~-~~~~~~~~~~~~~-g~d~viD~~G-~~-~~- 235 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFA-DETYLIDDIPEDL-AVDHAFECVG-GR-GS- 235 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhc-Cceeehhhhhhcc-CCcEEEECCC-CC-cc-
Confidence 4567899999976 44455556665 44567888887 6555665542 2211111111111 1276653221 10 01
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
...++...+.|+|||++++...
T Consensus 236 --~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 236 --QSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred --HHHHHHHHHhCcCCcEEEEEee
Confidence 1468889999999999998764
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.35 Score=39.30 Aligned_cols=90 Identities=12% Similarity=0.125 Sum_probs=51.7
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEE------Eeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCC
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGI------NFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWS 93 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~------~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~ 93 (184)
..++|+=||||+=..+.++--+-..++++ ++|. +...+.|.+ +++ ...+..+..+.+|+|++...
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~-dGF--~v~~~~Ea~~~ADvVviLlP----- 106 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE-NGF--KVGTYEELIPQADLVINLTP----- 106 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh-cCC--ccCCHHHHHHhCCEEEEcCC-----
Confidence 46899999999655443333332333443 2332 223333222 223 22333334455699988443
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+.....+.+++...||||..|.++.
T Consensus 107 Dt~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 107 DKQHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEecC
Confidence 3334467899999999999999864
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=91.29 E-value=3.7 Score=28.70 Aligned_cols=119 Identities=20% Similarity=0.193 Sum_probs=67.7
Q ss_pred ecCCcChHHHHHHhhCC-CCeEEEe--ec-hhHhhhCCC---------CCCceE-EEcccCc---cC--CCC--CEEEec
Q 030025 28 VGGSLGNTLKAITSKYP-HIKGINF--DL-PHVIQHSPE---------YPGVKH-VGGDMFQ---SV--PNG--DAILIK 86 (184)
Q Consensus 28 iG~G~G~~~~~l~~~~~-~~~~~~~--D~-~~~~~~a~~---------~~~i~~-~~~d~~~---~~--~~~--D~i~~~ 86 (184)
||=|.=+++..|++.+. ..++++. |. .+..+.... ..++.+ ..-|+.+ .+ ... |.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 56666677888888876 4444444 43 323322221 123332 3445554 22 222 999987
Q ss_pred hhhhcC-----------ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 87 WILHDW-----------SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 87 ~~l~~~-----------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+.---. ...-...+|+.+.++|+++|.+.|+-...+ .|+.=.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~---------------------------py~~W~ 135 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ---------------------------PYDSWN 135 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---------------------------CCcccc
Confidence 763320 011234688999999999999999543221 123334
Q ss_pred HHHHHHHcCCceeEEEee
Q 030025 156 FTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 156 ~~~~l~~aGf~~i~~~~~ 173 (184)
+.++.+++||..++..+-
T Consensus 136 i~~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 136 IEELAAEAGLVLVRKVPF 153 (166)
T ss_pred HHHHHHhcCCEEEEEecC
Confidence 457778899988876654
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.93 E-value=3 Score=32.50 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=54.6
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEE---cccCc-c-CCCC-CEEEechhhh
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVG---GDMFQ-S-VPNG-DAILIKWILH 90 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~---~d~~~-~-~~~~-D~i~~~~~l~ 90 (184)
..+..+||=.||| .|..+..+++.....+++++|. +.-++.+++..--.++. .++.+ . .... |+|+-..
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~--- 243 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS--- 243 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC---
Confidence 3456788888876 4566666666653336888887 66667766642111111 11111 0 1112 7765432
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..+ ..++.+.+.|+|||++++...
T Consensus 244 --G~~---~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 --GHP---SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --CCH---HHHHHHHHHhhcCCEEEEEcc
Confidence 222 357788899999999998764
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=90.81 E-value=1.1 Score=29.84 Aligned_cols=87 Identities=21% Similarity=0.293 Sum_probs=46.3
Q ss_pred CCCeEEEecCCcC-hHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccC----CCCCEEEechhhhcCCh
Q 030025 21 HIKQLVDVGGSLG-NTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSV----PNGDAILIKWILHDWSD 94 (184)
Q Consensus 21 ~~~~ilDiG~G~G-~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~----~~~D~i~~~~~l~~~~~ 94 (184)
+.++|+|||-|.= ..+..|.+. ++.++++|+ +. .+. .++.++..|+++|- .++|+|++... +
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiRP-----P 80 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIRP-----P 80 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---ccc--cCcceeeecccCCCHHHhcCCcEEEEeCC-----C
Confidence 3569999999866 445555554 489999998 44 222 78999999999842 23399988554 3
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 95 EHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 95 ~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+|...-+-++.+.. |.-+++.....
T Consensus 81 ~El~~~il~lA~~v--~adlii~pL~~ 105 (127)
T PF03686_consen 81 PELQPPILELAKKV--GADLIIRPLGG 105 (127)
T ss_dssp TTSHHHHHHHHHHH--T-EEEEE-BTT
T ss_pred hHHhHHHHHHHHHh--CCCEEEECCCC
Confidence 33344455566554 56677755433
|
; PDB: 2K4M_A. |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.19 E-value=4.2 Score=32.82 Aligned_cols=98 Identities=10% Similarity=0.119 Sum_probs=55.3
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec--hhHhhhCCCCCCceEEEcccCc-cCCCCCEEEechh-hhcCChH
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL--PHVIQHSPEYPGVKHVGGDMFQ-SVPNGDAILIKWI-LHDWSDE 95 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~--~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~~~-l~~~~~~ 95 (184)
..+++|=||.| .|......+....-.+++...- ....+.|++.. ..+...+-.. .+..+|+|+++.. -|.+-..
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~-~~~~~l~el~~~l~~~DvVissTsa~~~ii~~ 255 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG-AEAVALEELLEALAEADVVISSTSAPHPIITR 255 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC-CeeecHHHHHHhhhhCCEEEEecCCCccccCH
Confidence 67899999999 7766555554443345565553 45555565554 4444444332 3445699988643 3333222
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEeeecCCCC
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVESVLPELP 125 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 125 (184)
..+.++.+.=+. +++.|...|.+-
T Consensus 256 ---~~ve~a~~~r~~---~livDiavPRdi 279 (414)
T COG0373 256 ---EMVERALKIRKR---LLIVDIAVPRDV 279 (414)
T ss_pred ---HHHHHHHhcccC---eEEEEecCCCCC
Confidence 234433333222 888898877653
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.71 Score=35.22 Aligned_cols=54 Identities=15% Similarity=0.043 Sum_probs=42.8
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY 63 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~ 63 (184)
..+...++.... .++..|||-=||+|.++.+..+. +-+++|+|+ ++.++.|+++
T Consensus 195 ~~L~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 195 EALLKRIILASS--NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred HHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHH
Confidence 456677777765 67889999999999999876665 568999999 8888877655
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.72 E-value=2.8 Score=31.76 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=69.1
Q ss_pred cHHhHHHHHHHhcC------CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCC
Q 030025 5 TTLVLQKILEAYKG------FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~------~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~ 78 (184)
+..+-..+...++. +.+++..+|+|.-.|.++-.+.++ +..++.+|...|.+.....+.++....|-++..|
T Consensus 189 tLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P 266 (358)
T COG2933 189 TLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRP 266 (358)
T ss_pred hhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCccccc
Confidence 33444555555551 457789999999999999999888 6899999986666555556788999888887333
Q ss_pred --CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCC
Q 030025 79 --NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEG 111 (184)
Q Consensus 79 --~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pg 111 (184)
.. |-.+|..+ +.+. ++-..+..+|..|
T Consensus 267 ~r~~idWmVCDmV----EkP~--rv~~li~~Wl~nG 296 (358)
T COG2933 267 TRSNIDWMVCDMV----EKPA--RVAALIAKWLVNG 296 (358)
T ss_pred CCCCCceEEeehh----cCcH--HHHHHHHHHHHcc
Confidence 33 77777444 3333 5566677777655
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.42 Score=30.84 Aligned_cols=81 Identities=20% Similarity=0.233 Sum_probs=49.7
Q ss_pred CCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc--C-----CCCCEEEechhhhcCChHHHHH
Q 030025 30 GSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS--V-----PNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 30 ~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~--~-----~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
||.|..+..+++.. ....++.+|. ++..+.+++. .+.++.+|..++ + .++|.+++..- +++.-.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----~d~~n~ 77 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-GVEVIYGDATDPEVLERAGIEKADAVVILTD-----DDEENL 77 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-TSEEEES-TTSHHHHHHTTGGCESEEEEESS-----SHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-ccccccccchhhhHHhhcCccccCEEEEccC-----CHHHHH
Confidence 67777888777663 3347999998 6666665543 388999999872 2 22376666332 233333
Q ss_pred HHHHHHhhCCCCcEEEE
Q 030025 100 LLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 100 ~l~~~~~~L~pgG~l~i 116 (184)
.+-...+.+.|..+++.
T Consensus 78 ~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 78 LIALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHCCCCeEEE
Confidence 44455566677777766
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=89.19 E-value=0.59 Score=31.19 Aligned_cols=41 Identities=10% Similarity=0.069 Sum_probs=33.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE 62 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~ 62 (184)
.+++|+|||.+.|..+..++.+.. -.++.++. +...+..++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHH
Confidence 578999999999999999998853 47888887 666666654
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.02 E-value=1.5 Score=35.35 Aligned_cols=103 Identities=20% Similarity=0.275 Sum_probs=70.0
Q ss_pred CCCeEEEec-CCcC------hHHHHHHhhCCCCeEEEeec--hhHhhhCCCC---CCceEEEcccCc-cC----------
Q 030025 21 HIKQLVDVG-GSLG------NTLKAITSKYPHIKGINFDL--PHVIQHSPEY---PGVKHVGGDMFQ-SV---------- 77 (184)
Q Consensus 21 ~~~~ilDiG-~G~G------~~~~~l~~~~~~~~~~~~D~--~~~~~~a~~~---~~i~~~~~d~~~-~~---------- 77 (184)
++..|+=+| =|+| -++.++.++...+-++..|+ |.+++..+.. -++.|...+-.+ |.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 456788888 3444 44445555445566788887 7777766654 567777654333 42
Q ss_pred -CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 78 -PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 78 -~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
... |+|++-.+--|--+++.-.-+++++..++|.-+|++.|.....
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence 122 9999977665555677778889999999999999999875543
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.98 E-value=3.1 Score=31.61 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=46.9
Q ss_pred eEEEecCCc--ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHHH
Q 030025 24 QLVDVGGSL--GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKL 100 (184)
Q Consensus 24 ~ilDiG~G~--G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~~ 100 (184)
+|.=||+|. |.++..+.+. +.+++++|. +...+.+.+...+.....+. +....+|+|+..-. .....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilavp-----~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILALP-----IGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcCC-----HHHHHHH
Confidence 466677773 3455555444 458899997 66665554432222111111 12233498887544 3344567
Q ss_pred HHHHHhhCCCCcEE
Q 030025 101 LKNCHKSIPEGGKV 114 (184)
Q Consensus 101 l~~~~~~L~pgG~l 114 (184)
++++...++|+-.+
T Consensus 74 ~~~l~~~l~~~~ii 87 (279)
T PRK07417 74 SEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHhCCCCcEE
Confidence 88888888877433
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=88.83 E-value=7.6 Score=28.51 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=56.2
Q ss_pred HhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc---c----CCCC-CEEE
Q 030025 15 AYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ---S----VPNG-DAIL 84 (184)
Q Consensus 15 ~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~----~~~~-D~i~ 84 (184)
.+....+..+||..|+|. |..+..+++.. +.+++.++. +...+.+++...-..+.....+ . .... |+++
T Consensus 128 ~~~~~~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 128 RAGVLKPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEE
Confidence 333246788999999985 66777677765 478888876 5555544333111111111001 0 0123 8877
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.... .. ..+..+.+.|+++|.++.....
T Consensus 207 ~~~~-----~~---~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 207 DAVG-----GP---ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred ECCC-----CH---HHHHHHHHhcccCCEEEEEccC
Confidence 5322 11 3477788899999999986543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=88.81 E-value=9.4 Score=29.55 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=60.8
Q ss_pred CCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hh-HhhhCCCCCCceEEEcc-cCccCCCCCEEEechhhhcCChH
Q 030025 20 EHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PH-VIQHSPEYPGVKHVGGD-MFQSVPNGDAILIKWILHDWSDE 95 (184)
Q Consensus 20 ~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~-~~~~a~~~~~i~~~~~d-~~~~~~~~D~i~~~~~l~~~~~~ 95 (184)
-+..+|+-+|+| .|......+......+++.++. +. ..+.+++... .....+ ..+.....|+|++...--+.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVi~at~~~~~--- 251 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG-NAVPLDELLELLNEADVVISATGAPHY--- 251 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC-eEEeHHHHHHHHhcCCEEEECCCCCch---
Confidence 357899999886 3333333333322346777776 33 3344444432 333222 12223345999886554332
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHH
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATE 162 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (184)
..++..+.+.. +++..++.|...|..-..... . .++...++.++|.+..++
T Consensus 252 --~~~~~~~~~~~-~~~~~~viDlavPrdi~~~v~-------~------l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 252 --AKIVERAMKKR-SGKPRLIVDLAVPRDIEPEVG-------E------LEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred --HHHHHHHHhhC-CCCCeEEEEeCCCCCCchhhc-------c------CCCcEEEEHHHhHHHHHH
Confidence 13344443333 344456667766543221110 0 123445677777776654
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.65 E-value=1.6 Score=34.42 Aligned_cols=35 Identities=9% Similarity=0.069 Sum_probs=27.4
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-C---CeEEEeec
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-H---IKGINFDL 53 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~---~~~~~~D~ 53 (184)
++++.+|||..+-.|.-+..+++... . ..++.-|.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~ 191 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDV 191 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEeccc
Confidence 77999999999999999988888842 2 14566664
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=88.61 E-value=4.1 Score=32.95 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=60.4
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEe
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILI 85 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~ 85 (184)
..+.+.+..+..-+.++|+=+|+|. |......++.. +++++.+|. +.-.+.|+.. ++... +..+.....|+|+.
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~-G~~~~--~~~e~v~~aDVVI~ 263 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME-GYEVM--TMEEAVKEGDIFVT 263 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc-CCEEc--cHHHHHcCCCEEEE
Confidence 4566666666334678999999995 54444455544 568888987 5555555443 23222 12122333498876
Q ss_pred chhhhcCChHHHHHHHHH-HHhhCCCCcEEEEEe
Q 030025 86 KWILHDWSDEHCLKLLKN-CHKSIPEGGKVIVVE 118 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~-~~~~L~pgG~l~i~~ 118 (184)
.. ..+ .++.. ..+.+||||+++...
T Consensus 264 at-----G~~---~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 264 TT-----GNK---DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CC-----CCH---HHHHHHHHhcCCCCcEEEEeC
Confidence 42 222 34655 488999999998765
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=88.43 E-value=2.8 Score=29.04 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=29.9
Q ss_pred HHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 98 LKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
..+++-+.+.|.|||++++. .. .+ ......+. -+...-...+-..|.++||+.++-+..+
T Consensus 66 ~~l~~~~~~~l~pg~~lfVe-Y~-~D------------~eT~~~L~---~G~pp~~TrLG~~Ll~~GFtwfKdWYfP 125 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVE-YV-ED------------RETRRQLQ---RGVPPAETRLGFSLLKAGFTWFKDWYFP 125 (170)
T ss_dssp HHHHHHHHTT----SEEEEE--T-T-------------HHHHHHHH---TT--GGGSHHHHHHHTTT--EEEEEE--
T ss_pred HHHHHHHHHHhhhcCeEEEE-Ee-cC------------HHHHHHHH---cCCCcccchhHHHHHhCCcEEEeeeecc
Confidence 58999999999999999882 11 11 11111111 1112223345567899999999988765
|
; PDB: 2ARH_C. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=88.34 E-value=1.2 Score=32.81 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=41.1
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY 63 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~ 63 (184)
..+.+.++..+. .++..|||-=||+|.++.+..+. +-+++|+|+ +...+.+.++
T Consensus 150 ~~l~~~~i~~~s--~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 150 VTSLQPLIESFT--HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred HHHHHHHHHHhC--CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHH
Confidence 456677777655 56789999999999999877665 568899998 7777666543
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=87.93 E-value=3.6 Score=31.95 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=67.2
Q ss_pred EEEecCCcChHHHHHHhhCCCCe-EEEeec-hhHhhhCCC-CCCceEEEcccCc-c---CCCCCEEEechhhhcCC----
Q 030025 25 LVDVGGSLGNTLKAITSKYPHIK-GINFDL-PHVIQHSPE-YPGVKHVGGDMFQ-S---VPNGDAILIKWILHDWS---- 93 (184)
Q Consensus 25 ilDiG~G~G~~~~~l~~~~~~~~-~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~---~~~~D~i~~~~~l~~~~---- 93 (184)
|+|+=||.|..+.-+.+.. .+ +.++|. +.+.+.-+. +++ .+..+|+.+ . +++.|+++.......++
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 5899999999998887763 34 456887 655554443 344 555677776 2 33348887654444332
Q ss_pred ----hHHHHHHHHHHHhh---CCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCc
Q 030025 94 ----DEHCLKLLKNCHKS---IPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFS 166 (184)
Q Consensus 94 ----~~~~~~~l~~~~~~---L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 166 (184)
++....++.++.++ ++|. +++.|....- .. . ........+.+.|++.||.
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l-------------~~------~--~~~~~~~~i~~~l~~~GY~ 134 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGL-------------VS------H--DKGRTFKVIIETLEELGYK 134 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHH-------------Hh------c--ccchHHHHHHHHHHhCCCE
Confidence 12222344444444 4675 5665543211 00 0 0012356778888999987
Q ss_pred ee
Q 030025 167 GI 168 (184)
Q Consensus 167 ~i 168 (184)
..
T Consensus 135 v~ 136 (315)
T TIGR00675 135 VY 136 (315)
T ss_pred EE
Confidence 64
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=87.87 E-value=1.8 Score=31.93 Aligned_cols=19 Identities=0% Similarity=0.020 Sum_probs=16.9
Q ss_pred HHHHHHHHhhCCCCcEEEE
Q 030025 98 LKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i 116 (184)
..++++++|+|||||.+++
T Consensus 52 ~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHcCCCCEEEE
Confidence 4789999999999998876
|
|
| >PF14740 DUF4471: Domain of unknown function (DUF4471) | Back alignment and domain information |
|---|
Probab=87.51 E-value=1.1 Score=34.18 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=45.5
Q ss_pred CceEEEcccCccCC------CC-CEEEech-hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhh
Q 030025 65 GVKHVGGDMFQSVP------NG-DAILIKW-ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSL 136 (184)
Q Consensus 65 ~i~~~~~d~~~~~~------~~-D~i~~~~-~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~ 136 (184)
+|+|+..|....++ +. |+|++++ ..|.+.+. +.++++|+|.|++-..-. +
T Consensus 201 kVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~~A~LvvEtaKf--------------m 258 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAPDAVLVVETAKF--------------M 258 (289)
T ss_pred EEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCCCCEEEEEcchh--------------h
Confidence 36777777655221 22 9986655 45544432 677889999988844211 1
Q ss_pred hhhHhhhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 137 ADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
.++.. ....--.+.+.++++++||+...
T Consensus 259 vdLrK-----Eq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 259 VDLRK-----EQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred eeCCH-----HHHHHHHHHHHHHHHHCCCcccc
Confidence 11000 00011367889999999998764
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.33 E-value=3.5 Score=32.60 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=75.9
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---C---CceEEEcccCcc
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---P---GVKHVGGDMFQS 76 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~---~i~~~~~d~~~~ 76 (184)
+++++.-.+++.+. -....+|+|-=||||--+.+++...+..+++.-|+ |.+.+..+++ + +...+..|+..-
T Consensus 36 ~NRDlsV~~l~~~~-~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~l 114 (380)
T COG1867 36 FNRDLSVLVLKAFG-KLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANAL 114 (380)
T ss_pred hccchhHHHHHHhh-ccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHH
Confidence 34555556666665 22378999999999999999999988889999999 9888888765 2 333344454431
Q ss_pred C---CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 77 V---PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 77 ~---~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
. ... |+|=+ .-+..+ ..++..+.+..+.||.|.++-...
T Consensus 115 m~~~~~~fd~IDi----DPFGSP--aPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 115 LHELHRAFDVIDI----DPFGSP--APFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred HHhcCCCccEEec----CCCCCC--chHHHHHHHHhhcCCEEEEEeccc
Confidence 1 112 55532 122333 368999999999999999865443
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=86.68 E-value=12 Score=28.98 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=54.9
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCC-CEEEechhhhcCChH
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNG-DAILIKWILHDWSDE 95 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~-D~i~~~~~l~~~~~~ 95 (184)
+++..+||=.|+| .|..+..+++.. +++++.++. ++-.+.+++.. ++.+. |..+..+.. |+++..... .
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~G-a~~vi-~~~~~~~~~~d~~i~~~~~-----~ 234 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALG-AASAG-GAYDTPPEPLDAAILFAPA-----G 234 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhC-Cceec-cccccCcccceEEEECCCc-----H
Confidence 6778899999965 455556666665 567888876 55566665542 22111 111111122 765543221 1
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..+....+.|++||++++...
T Consensus 235 ---~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 235 ---GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ---HHHHHHHHhhCCCcEEEEEec
Confidence 358888899999999998764
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.62 E-value=3 Score=30.71 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=32.8
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEee
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFD 52 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D 52 (184)
.+.+++.++.. .-...-|.+||.|.|.+++.++... ...-++..|
T Consensus 37 ~lT~KIvK~A~-~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D 82 (326)
T KOG0821|consen 37 RLTDKIVKKAG-NLTNAYVYEIGPGPGGITRSILNADVARLLVVEKD 82 (326)
T ss_pred HHHHHHHHhcc-ccccceeEEecCCCCchhHHHHhcchhheeeeeec
Confidence 45677777766 5566789999999999999999763 233444455
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.47 E-value=1.4 Score=33.53 Aligned_cols=108 Identities=16% Similarity=0.036 Sum_probs=58.9
Q ss_pred cHHhHHHHHHHh--cCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCC----------------
Q 030025 5 TTLVLQKILEAY--KGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPG---------------- 65 (184)
Q Consensus 5 ~~~~~~~l~~~~--~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~---------------- 65 (184)
+-.+...+.+++ ...-..++|||+|||+|-......... .+.+...|. ...++ ..+.++
T Consensus 98 S~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~-~~t~pn~~~~~~~~~~~~e~~~ 175 (282)
T KOG2920|consen 98 SVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLR-LVTLPNILVNSHAGVEEKENHK 175 (282)
T ss_pred HHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhc-cceeeeEecchhhee-eecccceecchhhhhhhhhccc
Confidence 445666666665 212367899999999998887766653 245555555 23321 111111
Q ss_pred c-eEEEc---ccCc-cCC--CCCEEEechhhhcCChHHHHHH-HHHHHhhCCCCcEEEE
Q 030025 66 V-KHVGG---DMFQ-SVP--NGDAILIKWILHDWSDEHCLKL-LKNCHKSIPEGGKVIV 116 (184)
Q Consensus 66 i-~~~~~---d~~~-~~~--~~D~i~~~~~l~~~~~~~~~~~-l~~~~~~L~pgG~l~i 116 (184)
+ ..... |-.- ... .+|+|.++-+++.....+ .+ ......+++++|.++.
T Consensus 176 ~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~--~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 176 VDEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLA--VLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred ceeccccccccchhhhccccchhhhhhhhhhhCcchhh--hhHhhhhhhcCCccchhhh
Confidence 1 01111 1100 112 238888888888755433 22 4455566788887766
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=86.14 E-value=6.2 Score=33.61 Aligned_cols=86 Identities=14% Similarity=0.097 Sum_probs=52.0
Q ss_pred CeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc--C-----CCCCEEEechhhhcC
Q 030025 23 KQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS--V-----PNGDAILIKWILHDW 92 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~--~-----~~~D~i~~~~~l~~~ 92 (184)
.+|+=+ |.|..++.+++.. .+..++.+|. ++.++.+++ .+...+.+|..++ + .++|++++..
T Consensus 401 ~~vII~--G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~~----- 472 (601)
T PRK03659 401 PQVIIV--GFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVITC----- 472 (601)
T ss_pred CCEEEe--cCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEEe-----
Confidence 455555 4555555555432 3568899998 888877765 4678899999872 2 2337666522
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
++++....+-...|.+.|..+++.
T Consensus 473 ~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 473 NEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEE
Confidence 222222233344555778888776
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.01 E-value=1.2 Score=30.84 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=42.7
Q ss_pred EEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCccC-CCCCEEEechhhhcCChHHHHHH
Q 030025 25 LVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSV-PNGDAILIKWILHDWSDEHCLKL 100 (184)
Q Consensus 25 ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~-~~~D~i~~~~~l~~~~~~~~~~~ 100 (184)
|-=||+ |.....++++. ...++++.|. ++..+...+. + ....+-..+. ...|+|++... .+++...+
T Consensus 4 Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-g--~~~~~s~~e~~~~~dvvi~~v~----~~~~v~~v 74 (163)
T PF03446_consen 4 IGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA-G--AEVADSPAEAAEQADVVILCVP----DDDAVEAV 74 (163)
T ss_dssp EEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT-T--EEEESSHHHHHHHBSEEEE-SS----SHHHHHHH
T ss_pred EEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh-h--hhhhhhhhhHhhcccceEeecc----cchhhhhh
Confidence 344555 55555555552 3568888997 5544443322 2 2222211111 22388877332 33455677
Q ss_pred HHH--HHhhCCCCcEEEE
Q 030025 101 LKN--CHKSIPEGGKVIV 116 (184)
Q Consensus 101 l~~--~~~~L~pgG~l~i 116 (184)
+.. +...|++|..++-
T Consensus 75 ~~~~~i~~~l~~g~iiid 92 (163)
T PF03446_consen 75 LFGENILAGLRPGKIIID 92 (163)
T ss_dssp HHCTTHGGGS-TTEEEEE
T ss_pred hhhhHHhhccccceEEEe
Confidence 888 8888887766554
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.01 E-value=1.2 Score=29.23 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=53.2
Q ss_pred CcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-------cCCC-C-CEEEechhhhcCChHHHHHH
Q 030025 31 SLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-------SVPN-G-DAILIKWILHDWSDEHCLKL 100 (184)
Q Consensus 31 G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-------~~~~-~-D~i~~~~~l~~~~~~~~~~~ 100 (184)
|.|..+..+++... .+++++|. +.-++.+++..--.++..+-.+ ..+. . |+|+-+.. .+ ..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~~---~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----SG---DT 71 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----SH---HH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----cH---HH
Confidence 45778888888876 89999998 6667777665322222222211 1222 3 77655322 22 46
Q ss_pred HHHHHhhCCCCcEEEEEeeec
Q 030025 101 LKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 101 l~~~~~~L~pgG~l~i~~~~~ 121 (184)
++...++++|+|++++.....
T Consensus 72 ~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 72 LQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHhccCCEEEEEEccC
Confidence 999999999999999977554
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=85.96 E-value=12 Score=27.67 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=49.0
Q ss_pred CCCCeEEEecCCcChHHHHHHhhC--CCCeEEEeec--hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChH
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKY--PHIKGINFDL--PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDE 95 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~--~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~ 95 (184)
+..+.||-.||..|.+..++++.+ .++.+....- +.|-+.+.+ .++.....|..+ ++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-~gl~~~kLDV~~------------------~~ 65 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-FGLKPYKLDVSK------------------PE 65 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-hCCeeEEeccCC------------------hH
Confidence 456789999999999999999886 3455555542 445444322 235555555443 33
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+..++..+++.. |+|+|=+.-
T Consensus 66 ~V~~v~~evr~~--~~Gkld~L~ 86 (289)
T KOG1209|consen 66 EVVTVSGEVRAN--PDGKLDLLY 86 (289)
T ss_pred HHHHHHHHHhhC--CCCceEEEE
Confidence 445666766665 788775533
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=85.68 E-value=0.82 Score=33.05 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=30.5
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSP 61 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~ 61 (184)
-.++..|||.=||+|.++.+..+. +-+++|+|+ +...+.|+
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhc
Confidence 346789999999999999887776 457999999 77777653
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.98 E-value=7.5 Score=31.10 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=56.0
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCC----CCCce---EEEcccCccCCCC-CEEEechhhhcCCh
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPE----YPGVK---HVGGDMFQSVPNG-DAILIKWILHDWSD 94 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~----~~~i~---~~~~d~~~~~~~~-D~i~~~~~l~~~~~ 94 (184)
.+|+=++=..|.++..++...|. ...|. .+.+.+-. .+++. +...+...++|.. |+|++...= ..
T Consensus 46 ~~~~i~nd~fGal~~~l~~~~~~---~~~ds-~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~d~vl~~~PK---~~ 118 (378)
T PRK15001 46 GPVLILNDAFGALSCALAEHKPY---SIGDS-YISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIKVPK---TL 118 (378)
T ss_pred CCEEEEcCchhHHHHHHHhCCCC---eeehH-HHHHHHHHHHHHHcCCCcccceeecccccccCCCCEEEEEeCC---CH
Confidence 48999999999999999965442 22452 22222211 12221 2233334455555 988774321 12
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 95 EHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 95 ~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
......+..+.+.|.||+.++..+..
T Consensus 119 ~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 119 ALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 34457799999999999998876643
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.86 E-value=2.2 Score=34.93 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=66.4
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc----c----CCC--CCE
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ----S----VPN--GDA 82 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~----~----~~~--~D~ 82 (184)
+....+|=+|-|.|.+..-+....|..+++++.+ |.|++.|+++ .+......|-.+ . ... .|+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 3456788888888999888877788889999999 9999999875 222333233222 1 111 177
Q ss_pred EEe------chhhhcCC-hHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 83 ILI------KWILHDWS-DEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 83 i~~------~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+.. .+.+..-+ .--+..++..++..|+|.|.++|.-...
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 754 11111111 1233478999999999999998855443
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=84.63 E-value=4.3 Score=33.77 Aligned_cols=92 Identities=13% Similarity=0.173 Sum_probs=56.6
Q ss_pred CCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc--------------c--------
Q 030025 21 HIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ--------------S-------- 76 (184)
Q Consensus 21 ~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~--------------~-------- 76 (184)
+..+++=+|+|. |..+..+++.. ++.++.+|. +..++.+++. ..+++..|..+ +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 468999999984 45555566654 467888998 6667666654 23333333210 0
Q ss_pred C----CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 77 V----PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 77 ~----~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
+ .+.|+|+..-.+---+.+ .-+.++..+.+|||+.++=
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEEE
Confidence 1 223999665544332222 2367888999999998663
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=84.22 E-value=15 Score=28.97 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=53.6
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCC-eEEEeec-hhHhhhCCCCCCceEEE---cccCc---cC-CCC-CEEEech
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHI-KGINFDL-PHVIQHSPEYPGVKHVG---GDMFQ---SV-PNG-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~i~~~~---~d~~~---~~-~~~-D~i~~~~ 87 (184)
+.+..+||=.|+| .|..+..+++.. .. +++.+|. +.-++.+++..--.++. .|..+ .. +.. |+++-..
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence 6677888888875 455666666655 44 6888887 66666665442111111 11111 01 113 7776422
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..+ ..+....+.++++|++++...
T Consensus 268 -----G~~---~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 268 -----GSV---PALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -----CCh---HHHHHHHHHHhcCCEEEEEcc
Confidence 111 357778889999999998654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.13 E-value=6.8 Score=29.61 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=45.5
Q ss_pred eEEEecCCc--ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHHH
Q 030025 24 QLVDVGGSL--GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKL 100 (184)
Q Consensus 24 ~ilDiG~G~--G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~~ 100 (184)
+|.=||+|. |.++..+.+.....+++++|. +...+.+.+..-+.. ..+.. .....|+|++.- ++.....+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~-~~~~~-~~~~aD~Vilav-----p~~~~~~~ 74 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDE-IVSFE-ELKKCDVIFLAI-----PVDAIIEI 74 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcc-cCCHH-HHhcCCEEEEeC-----cHHHHHHH
Confidence 466677763 345555554433357888887 555555443221111 11211 122258887754 33445577
Q ss_pred HHHHHhhCCCCcEEE
Q 030025 101 LKNCHKSIPEGGKVI 115 (184)
Q Consensus 101 l~~~~~~L~pgG~l~ 115 (184)
++++.. ++||..++
T Consensus 75 ~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 75 LPKLLD-IKENTTII 88 (275)
T ss_pred HHHHhc-cCCCCEEE
Confidence 888888 88776443
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=83.46 E-value=14 Score=31.74 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=53.2
Q ss_pred CCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc--C-----CCCCEEEechhhhcC
Q 030025 22 IKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS--V-----PNGDAILIKWILHDW 92 (184)
Q Consensus 22 ~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~--~-----~~~D~i~~~~~l~~~ 92 (184)
..+|+=+||| .|......+++. +..++.+|. ++.++.+++ .+...+.+|..++ + ..+|++++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vvv~~----- 472 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAI----- 472 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHh-cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe-----
Confidence 3678777777 444444444432 568899998 777777765 4678899999872 2 2237766532
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
++++.....-...|.+.|+-+++.
T Consensus 473 ~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 473 DDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEE
Confidence 333323334344555667766655
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.33 E-value=7 Score=31.62 Aligned_cols=100 Identities=12% Similarity=0.123 Sum_probs=58.0
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCC------CCCceEEEcccCc----cCCCC-CEEEe
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPE------YPGVKHVGGDMFQ----SVPNG-DAILI 85 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~----~~~~~-D~i~~ 85 (184)
.++.-+|||..+-.|.-+..++..- -...+++.|. ..-+..... ..+......|... .++.. |-|..
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLL 318 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLL 318 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceeee
Confidence 5677899999999999888888874 3356777774 333222222 1444444555432 12211 33321
Q ss_pred ----ch---------------h--hhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 86 ----KW---------------I--LHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 86 ----~~---------------~--l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+. + +..+..-+ .++|..+.++++|||+|+-++=
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQ-r~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQ-RELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHH-HHHHHHHHhhccCCcEEEEEee
Confidence 11 0 11111112 3688899999999999998653
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=83.23 E-value=9.2 Score=29.89 Aligned_cols=90 Identities=12% Similarity=0.047 Sum_probs=53.0
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec----hhHhhhCCCCCCceEEEcccCc-c-----CCCC-CEEEec
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL----PHVIQHSPEYPGVKHVGGDMFQ-S-----VPNG-DAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~----~~~~~~a~~~~~i~~~~~d~~~-~-----~~~~-D~i~~~ 86 (184)
..+..+||=+|+| .|.++..+++.. .+++++++. +.-.+.+++. ++.++ +..+ + .... |+|+-.
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~-Ga~~v--~~~~~~~~~~~~~~~~d~vid~ 245 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL-GATYV--NSSKTPVAEVKLVGEFDLIIEA 245 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc-CCEEe--cCCccchhhhhhcCCCCEEEEC
Confidence 3467889999876 466666677765 457888763 3344444433 22332 1111 1 1112 766653
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.. .+ ..+....+.|+|||++++....
T Consensus 246 ~g-----~~---~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 246 TG-----VP---PLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred cC-----CH---HHHHHHHHHccCCcEEEEEecC
Confidence 22 12 3578889999999999886643
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.23 E-value=3.1 Score=31.76 Aligned_cols=20 Identities=15% Similarity=0.644 Sum_probs=17.7
Q ss_pred HHHHHHHHhhCCCCcEEEEE
Q 030025 98 LKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i~ 117 (184)
..++++++++|||||.+++.
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 36899999999999999874
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.18 E-value=4.8 Score=32.29 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=48.0
Q ss_pred CCCeEEEecCCcChHHHHHHhhC--CCCeEEEeechh-HhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHH
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKY--PHIKGINFDLPH-VIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHC 97 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~ 97 (184)
..++|.=||. |.++..++++. .+.++++.|... -.+..+ ..++.+. .++.+-++..|+|++...+. ++.
T Consensus 198 ~gktVGIVG~--G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-~~g~~~~-~~l~ell~~sDvV~l~lPlt----~~T 269 (386)
T PLN03139 198 EGKTVGTVGA--GRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-ETGAKFE-EDLDAMLPKCDVVVINTPLT----EKT 269 (386)
T ss_pred CCCEEEEEee--cHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-hcCceec-CCHHHHHhhCCEEEEeCCCC----HHH
Confidence 3467777775 55555555442 367888888521 111111 1223221 13333344569998855443 444
Q ss_pred HHHH-HHHHhhCCCCcEEEE
Q 030025 98 LKLL-KNCHKSIPEGGKVIV 116 (184)
Q Consensus 98 ~~~l-~~~~~~L~pgG~l~i 116 (184)
..++ ++....+|||.+|+=
T Consensus 270 ~~li~~~~l~~mk~ga~lIN 289 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVN 289 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEE
Confidence 5555 457788899877763
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.05 E-value=9.8 Score=30.09 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=42.1
Q ss_pred eEEEecCC--cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHHH
Q 030025 24 QLVDVGGS--LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKL 100 (184)
Q Consensus 24 ~ilDiG~G--~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~~ 100 (184)
+|.=||+| -|.++..+.+....+.+++.|. ......+....-+.-...|..+...++|+|+..-.. .....+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-----~~~~~v 76 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-----DATAAL 76 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-----HHHHHH
Confidence 46667776 2455555555545566666665 222222221111111111111122334988885543 344578
Q ss_pred HHHHHh-hCCCCc
Q 030025 101 LKNCHK-SIPEGG 112 (184)
Q Consensus 101 l~~~~~-~L~pgG 112 (184)
++++.+ .++|+-
T Consensus 77 l~~l~~~~l~~~~ 89 (359)
T PRK06545 77 LAELADLELKPGV 89 (359)
T ss_pred HHHHhhcCCCCCc
Confidence 888887 488873
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=82.94 E-value=19 Score=28.23 Aligned_cols=93 Identities=17% Similarity=0.217 Sum_probs=53.8
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEE---EcccCc---cC-C-CC-CEEEech
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHV---GGDMFQ---SV-P-NG-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~---~~d~~~---~~-~-~~-D~i~~~~ 87 (184)
+.+..+||=.|+| .|..+..+++.....+++.+|. +.-.+.+++..--.++ ..|..+ .. + .. |+|+-..
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~ 253 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAV 253 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 6678899999875 4566666677653235888876 5555555543211111 111111 01 1 12 7776422
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..+ ..++...+.+++||++++...
T Consensus 254 -----g~~---~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 254 -----GRP---ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -----CCH---HHHHHHHHHhccCCEEEEECC
Confidence 222 347778889999999998654
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=82.88 E-value=20 Score=27.67 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=51.8
Q ss_pred CCCeEEEecCCc-ChHHHHHHhhCCCC-eEEEeec-hhHhhhCCCCCCceEEEcc---cCc--cCCCC-CEEEechhhhc
Q 030025 21 HIKQLVDVGGSL-GNTLKAITSKYPHI-KGINFDL-PHVIQHSPEYPGVKHVGGD---MFQ--SVPNG-DAILIKWILHD 91 (184)
Q Consensus 21 ~~~~ilDiG~G~-G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~i~~~~~d---~~~--~~~~~-D~i~~~~~l~~ 91 (184)
+..+||-.|||. |..+..+++.. +. ++++++. +...+.+++..--.++..+ ... ..... |+++-....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~-- 241 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA-- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC--
Confidence 678888888775 66777777765 44 6777776 5555554443211111111 111 11122 777653221
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. ..++...+.|+++|+++...
T Consensus 242 ---~---~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 242 ---P---AALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ---H---HHHHHHHHHHhcCCEEEEEe
Confidence 1 34778889999999998754
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
Probab=82.51 E-value=4.2 Score=28.81 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=32.3
Q ss_pred CEEEechhhhcCCh----------HHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 81 DAILIKWILHDWSD----------EHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 81 D~i~~~~~l~~~~~----------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
|+|+++++++-+.. +...+++++++++|+|+-.++......
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 99999999988753 344578888888899998888866544
|
SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.47 E-value=22 Score=28.02 Aligned_cols=104 Identities=12% Similarity=0.078 Sum_probs=58.2
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-CCceEEEcccCccCCC-CCEEEechh
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-PGVKHVGGDMFQSVPN-GDAILIKWI 88 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-~~i~~~~~d~~~~~~~-~D~i~~~~~ 88 (184)
-++.+.. .=..++||=+|--...+...+.. ..+++..-+........+.. .++.|- .++..+.+. .|.|+....
T Consensus 10 ~~~r~~~-~~~~~~~l~~~~~~d~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~d~~~~~~p 85 (342)
T PRK09489 10 VLLRHSD-DFEQRRVLFAGDLQDDLPAQLDA--ASVRVHTQQFHHWQVLSRQMGDNARFS-LVATAEDVADCDTLIYYWP 85 (342)
T ss_pred HHHhhHH-HhCCCcEEEEcCcchhhHHhhhc--cceEEehhhhHHHHHHHhhcCCceEec-cccCCccCCCCCEEEEECC
Confidence 3334433 33467899999888887776652 23344433333332222211 223222 333323223 388877433
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
= ...+..-.|..+.+.|+|||.+++.....
T Consensus 86 k---~k~~~~~~l~~~~~~l~~g~~i~~~G~~~ 115 (342)
T PRK09489 86 K---NKQEAQFQLMNLLSLLPVGTDIFVVGENR 115 (342)
T ss_pred C---CHHHHHHHHHHHHHhCCCCCEEEEEEecc
Confidence 2 13456678999999999999999976543
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=81.91 E-value=2.3 Score=33.02 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=58.5
Q ss_pred HHHhcCCCCCCeEEEec-CCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc-----ccCccCCCC-C---
Q 030025 13 LEAYKGFEHIKQLVDVG-GSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG-----DMFQSVPNG-D--- 81 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG-~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~-----d~~~~~~~~-D--- 81 (184)
++... +.+.++|-=+| +|.|..+..++++. ..+++++|. +.--+.+-+.-+.+.... |..+..... |
T Consensus 174 Lk~~g-~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~ 251 (360)
T KOG0023|consen 174 LKRSG-LGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGI 251 (360)
T ss_pred hHHcC-CCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcc
Confidence 34445 67778877777 56999999999997 679999997 423333333322222222 111111111 3
Q ss_pred -EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 82 -AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 82 -~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.+... +- .-+..+.+.||++|++++...-.
T Consensus 252 ~~v~~~-a~---------~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 252 DTVSNL-AE---------HALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred eeeeec-cc---------cchHHHHHHhhcCCEEEEEeCcC
Confidence 33321 21 23677888999999999976543
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.77 E-value=20 Score=27.00 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=52.7
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc-ccCc---cC--CCC-CEEEechhh
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG-DMFQ---SV--PNG-DAILIKWIL 89 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~-d~~~---~~--~~~-D~i~~~~~l 89 (184)
..+..+||=+|+| .|..+..+++.....+++.+|. +.-++.+++..--.++.. +..+ .. +.. |+++-..
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~-- 195 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFS-- 195 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECC--
Confidence 3467789988875 4555566666653234777776 555555554421111110 1001 11 122 7775422
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
..+ ..++.+.+.++|+|++++....
T Consensus 196 ---G~~---~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 196 ---GAT---AAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred ---CCh---HHHHHHHHHhcCCCEEEEeccC
Confidence 122 3588889999999999987643
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=81.77 E-value=3.7 Score=28.67 Aligned_cols=90 Identities=11% Similarity=0.102 Sum_probs=49.5
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec--hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHH
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL--PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~--~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
.++|.=||.|+=..+.++.-+-..++++.-.. +...+.|++. + |...+..+-...+|+|++. +||+...+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~-G--f~v~~~~eAv~~aDvV~~L-----~PD~~q~~ 75 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKAD-G--FEVMSVAEAVKKADVVMLL-----LPDEVQPE 75 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHT-T---ECCEHHHHHHC-SEEEE------S-HHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHC-C--CeeccHHHHHhhCCEEEEe-----CChHHHHH
Confidence 57899999986555555544434566654443 4355555432 2 2222333323334888772 35555557
Q ss_pred HH-HHHHhhCCCCcEEEEEee
Q 030025 100 LL-KNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 100 ~l-~~~~~~L~pgG~l~i~~~ 119 (184)
++ +++...|+||-.|++..-
T Consensus 76 vy~~~I~p~l~~G~~L~fahG 96 (165)
T PF07991_consen 76 VYEEEIAPNLKPGATLVFAHG 96 (165)
T ss_dssp HHHHHHHHHS-TT-EEEESSS
T ss_pred HHHHHHHhhCCCCCEEEeCCc
Confidence 77 889999999999998653
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.59 E-value=8.2 Score=30.10 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=57.6
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--CCceEEEcccCc---cCCCCCEEEechhhhcCC
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--PGVKHVGGDMFQ---SVPNGDAILIKWILHDWS 93 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--~~i~~~~~d~~~---~~~~~D~i~~~~~l~~~~ 93 (184)
.+.+|.=||.| .|..+..++--. +..++.+|. ..-++..... .+++..-..... ....+|++|..-.+---.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak 245 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK 245 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence 34788889998 567777666644 568888887 4444443332 345554444333 344458887644333222
Q ss_pred hHHHHHHHHHHHhhCCCCcEEE
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~ 115 (184)
.| .-+.++..+.+|||+.++
T Consensus 246 aP--kLvt~e~vk~MkpGsViv 265 (371)
T COG0686 246 AP--KLVTREMVKQMKPGSVIV 265 (371)
T ss_pred Cc--eehhHHHHHhcCCCcEEE
Confidence 33 367899999999999886
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=80.58 E-value=21 Score=28.96 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEec
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIK 86 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~ 86 (184)
...+.+..+..-..++|+=+|+|. |......++.+ +++++++|. +.-...+.. ....+. +..+....+|+++..
T Consensus 182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~-~G~~v~--~leeal~~aDVVIta 257 (406)
T TIGR00936 182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAM-DGFRVM--TMEEAAKIGDIFITA 257 (406)
T ss_pred HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHh-cCCEeC--CHHHHHhcCCEEEEC
Confidence 344444444124678999999985 44444444443 678888886 433222222 233222 222223344988763
Q ss_pred hhhhcCChHHHHHHHH-HHHhhCCCCcEEEEEee
Q 030025 87 WILHDWSDEHCLKLLK-NCHKSIPEGGKVIVVES 119 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~-~~~~~L~pgG~l~i~~~ 119 (184)
. +. ..+++ +....+|||++++....
T Consensus 258 T-----G~---~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 258 T-----GN---KDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred C-----CC---HHHHHHHHHhcCCCCcEEEEECC
Confidence 2 12 24565 48889999999887543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=80.58 E-value=24 Score=27.09 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=52.6
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCe-EEEeec-hhHhhhCCCCCCceEEEcccCcc-------CCCC-CEEEech
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIK-GINFDL-PHVIQHSPEYPGVKHVGGDMFQS-------VPNG-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~-~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~-D~i~~~~ 87 (184)
+.+..+||-+|+| .|..+..+++.. +++ ++.++. ++..+.+++. .+.......... .+.. |+++...
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~ 234 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKL-GATETVDPSREDPEAQKEDNPYGFDVVIEAT 234 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh-CCeEEecCCCCCHHHHHHhcCCCCcEEEECC
Confidence 6778899999865 356666666665 344 666665 5555554333 222111111111 1123 8887532
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. .. ..+....+.|+++|+++....
T Consensus 235 ~-----~~---~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 235 G-----VP---KTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred C-----Ch---HHHHHHHHHHhcCCEEEEEec
Confidence 1 11 357788899999999987654
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=80.34 E-value=22 Score=26.49 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=51.9
Q ss_pred CCCCCeEEEecCCc-ChHHHHHHhhCCCCe-EEEeec-hhHhhhCCCCCCceEEEcccC-cc-CCCC-CEEEechhhhcC
Q 030025 19 FEHIKQLVDVGGSL-GNTLKAITSKYPHIK-GINFDL-PHVIQHSPEYPGVKHVGGDMF-QS-VPNG-DAILIKWILHDW 92 (184)
Q Consensus 19 ~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~-~~~~D~-~~~~~~a~~~~~i~~~~~d~~-~~-~~~~-D~i~~~~~l~~~ 92 (184)
+.+..+||-.|+|. |..+..+++.. +++ +++++. ++..+.+++..-.... .+.. .. .... |+++-...-
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~d~vl~~~~~--- 169 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALGPADPV-AADTADEIGGRGADVVIEASGS--- 169 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcCCCccc-cccchhhhcCCCCCEEEEccCC---
Confidence 66788888888764 66666667765 345 788876 5555555443200000 0000 01 1122 877653211
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. ..+....+.|+++|+++...
T Consensus 170 --~---~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 170 --P---SALETALRLLRDRGRVVLVG 190 (277)
T ss_pred --h---HHHHHHHHHhcCCcEEEEEe
Confidence 1 35777888999999998754
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.24 E-value=7.3 Score=31.24 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=47.1
Q ss_pred CCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHH
Q 030025 22 IKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 22 ~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
.++|.=||.|. |......++.+ +.++++.|. ....+..+ ..++.+ ..+..+-++.+|+|++...+. ++...
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~f-G~~V~~~dr~~~~~~~~~-~~g~~~-~~~l~ell~~aDvV~l~lPlt----~~T~~ 264 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPF-DVKLHYTDRHRLPEEVEQ-ELGLTY-HVSFDSLVSVCDVVTIHCPLH----PETEH 264 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCCCCchhhHh-hcCcee-cCCHHHHhhcCCEEEEcCCCC----HHHHH
Confidence 45677777663 44333333334 678999986 31111111 112322 122222345569998866554 44556
Q ss_pred HHH-HHHhhCCCCcEEE
Q 030025 100 LLK-NCHKSIPEGGKVI 115 (184)
Q Consensus 100 ~l~-~~~~~L~pgG~l~ 115 (184)
++. +....+|||..|+
T Consensus 265 li~~~~l~~mk~ga~lI 281 (385)
T PRK07574 265 LFDADVLSRMKRGSYLV 281 (385)
T ss_pred HhCHHHHhcCCCCcEEE
Confidence 664 5777789987766
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 184 | ||||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 1e-60 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 7e-57 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 2e-56 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 1e-49 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 9e-47 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 1e-27 | ||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 3e-27 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 1e-26 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 3e-26 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 4e-26 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 4e-26 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 1e-17 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 6e-16 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 1e-14 | ||
| 1xds_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 2e-13 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 2e-13 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 9e-13 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 2e-09 | ||
| 3i53_A | 332 | Crystal Structure Of An O-Methyltransferase (Ncsb1) | 3e-08 | ||
| 1x19_A | 359 | Crystal Structure Of Bchu Involved In Bacteriochlor | 6e-08 |
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From Neocarzinostatin Biosynthesis In Complex With S-Adenosyl-L- Homocysteine (Sah) Length = 332 | Back alignment and structure |
|
| >pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 280 bits (717), Expect = 3e-95
Identities = 95/184 (51%), Positives = 131/184 (71%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M NH+ ++ +K+LE Y GFE + LVDVGG +G T+ AI + YP IKG+NFDLPHVI +
Sbjct: 181 MKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEA 240
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P++PGV HVGGDMF+ VP+GD IL+KWILHDWSD+HC LLKNC+ ++P GKV++V+ +
Sbjct: 241 PQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI 300
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LP PE S+ D++++ PGG+ER + EF LA AGF+G++ + N W +
Sbjct: 301 LPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAI 360
Query: 181 EFYK 184
EF K
Sbjct: 361 EFTK 364
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 275 bits (706), Expect = 1e-93
Identities = 98/184 (53%), Positives = 125/184 (67%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M +++T+ ++KILE Y GFE + +VDVGG G I +KYP I INFDLPHVIQ +
Sbjct: 183 MSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDA 242
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P + GV+H+GGDMF VP GDAI IKWI HDWSDEHCLKLLKNC+ ++P+ GKVIV E +
Sbjct: 243 PAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI 302
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LP P+ +K+ D L++ PGGKERT+ EF LA +GF G + N +VM
Sbjct: 303 LPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVM 362
Query: 181 EFYK 184
EF K
Sbjct: 363 EFLK 366
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 267 bits (683), Expect = 4e-90
Identities = 92/185 (49%), Positives = 125/185 (67%), Gaps = 2/185 (1%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M + ++++LE Y GFE I LVDVGG G L+ I SKYP IKGINFDLP VI+++
Sbjct: 189 MVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENA 248
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P G++HVGGDMF SVP GDA+++K + H+WSDE C++ L NCHK++ GKVI+VE +
Sbjct: 249 PPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI 308
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCF-FHNLWV 179
LPE P SK+ S D L+ GG+ERT+ ++ L+ +GFS + C F++L V
Sbjct: 309 LPEEPNTSEESKLVSTLDNLMFIT-VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGV 367
Query: 180 MEFYK 184
MEFYK
Sbjct: 368 MEFYK 372
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 260 bits (665), Expect = 1e-87
Identities = 63/186 (33%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M + + L+ + + F+ ++ +VDVGG G T K I +P +K I FD P V+++
Sbjct: 168 MASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL 227
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIP---EGGKVIVV 117
+ +VGGDMF S+PN DA+L+K+ILH+W+D+ CL++LK C +++ + GKV ++
Sbjct: 228 SGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII 287
Query: 118 ESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNL 177
+ V+ + + ++I L DV + GKER + E+ L EAGF + L
Sbjct: 288 DMVIDKKKDENQVTQIKLLMDVNMAC--LNGKERNEEEWKKLFIEAGFQHYKISPLTGFL 345
Query: 178 WVMEFY 183
++E Y
Sbjct: 346 SLIEIY 351
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 250 bits (641), Expect = 1e-83
Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 17/197 (8%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M L + +AY + ++ ++DVGG G L AI + PH++G +L + +
Sbjct: 163 MSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERA 221
Query: 61 PEY-------PGVKHVGGDMFQSVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGG 112
V GD F+ +P D +L+ ++L +WSDE L +L+ C +++ GG
Sbjct: 222 RRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGG 281
Query: 113 KVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFV- 171
+++V++ E +G ++L D+ ++T + GG+ RT+ E LA AG +
Sbjct: 282 RLLVLDRADVE--GDGADRFFSTLLDLRMLT-FMGGRVRTRDEVVDLAGSAGLALASERT 338
Query: 172 ----CFFHNLWVMEFYK 184
+ ++EF
Sbjct: 339 SGSTTLPFDFSILEFTA 355
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 248 bits (635), Expect = 5e-83
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 11/188 (5%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVI--- 57
M + + A F + DVGG G L + ++P ++G+ D V+
Sbjct: 165 METVSAAEHLILARAG-DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARH 223
Query: 58 -QHSPEYPG-VKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVI 115
+P+ G K V GD + VP+ D ++K ILH+W DE +++L NC + +P G+V+
Sbjct: 224 RLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVL 283
Query: 116 VVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFH 175
V+++V+PE + + + D +++ G+ERT E L T AG R V
Sbjct: 284 VIDAVVPEGND----AHQSKEMDFMMLA-ARTGQERTAAELEPLFTAAGLRLDRVVGTSS 338
Query: 176 NLWVMEFY 183
+ +
Sbjct: 339 VMSIAVGV 346
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 1e-82
Identities = 66/186 (35%), Positives = 108/186 (58%), Gaps = 4/186 (2%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M + + + + E + FE ++ LVDVGG G K I +PH+K FD P V+ +
Sbjct: 173 MASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNL 232
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIP---EGGKVIVV 117
+ VGGDMF+S+P+ DA+L+KW+LHDW+DE LK+LKN ++I + GKVI++
Sbjct: 233 TGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIII 292
Query: 118 ESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNL 177
+ + E ++ +++ D++++T + GKERTK E+ L +AGFS +
Sbjct: 293 DISIDETSDDRGLTELQLDYDLVMLTMF-LGKERTKQEWEKLIYDAGFSSYKITPISGFK 351
Query: 178 WVMEFY 183
++E Y
Sbjct: 352 SLIEVY 357
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 246 bits (630), Expect = 4e-82
Identities = 47/193 (24%), Positives = 95/193 (49%), Gaps = 16/193 (8%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M + + ++ AY F VD+GG G+ + A+ +P ++G + P V + +
Sbjct: 183 MGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEA 241
Query: 61 PEY-------PGVKHVGGDMFQSVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGG 112
E + + GD F+++P+G D LIK +LHDW D+ +++L+ ++
Sbjct: 242 RELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDS 301
Query: 113 KVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFV- 171
+++V+++++ E P T D+L++ GG ER++ EF L ++G R +
Sbjct: 302 RLLVIDNLIDERPAASTL-----FVDLLLLV-LVGGAERSESEFAALLEKSGLRVERSLP 355
Query: 172 CFFHNLWVMEFYK 184
C + ++E +
Sbjct: 356 CGAGPVRIVEIRR 368
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 1e-78
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 18/190 (9%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M +H L I Y + + +VDVGG G L A+ + + + G DL +
Sbjct: 150 MSHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAA 208
Query: 61 PEY-------PGVKHVGGDMFQSVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGG 112
+ V G F +P G ++ +LHDW D + +L+ C ++ GG
Sbjct: 209 HRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGG 268
Query: 113 KVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172
V+V+E+V + + D+ ++T Y GGKER+ E LA +AG +
Sbjct: 269 VVLVIEAVAGD-------EHAGTGMDLRMLT-YFGGKERSLAELGELAAQAGLAVRAAHP 320
Query: 173 FFHNLWVMEF 182
+ ++E
Sbjct: 321 -ISYVSIVEM 329
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 237 bits (607), Expect = 1e-78
Identities = 38/179 (21%), Positives = 80/179 (44%), Gaps = 13/179 (7%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
+ + AY + +++ ++DVGG G AI + PH+ ++ + +
Sbjct: 164 LACDQDVAFDAPAAAY-DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTA 222
Query: 61 PEY-------PGVKHVGGDMFQSVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGG 112
Y V V GD F+ +P DAI++ ++L +W D +++L C +++ GG
Sbjct: 223 RSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGG 282
Query: 113 KVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFV 171
++++ E + ++ + D+ ++ + GG RT+ ++ LA AG
Sbjct: 283 RILIHERD---DLHENSFNEQFTELDLRMLV-FLGGALRTREKWDGLAASAGLVVEEVR 337
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 235 bits (602), Expect = 3e-78
Identities = 51/190 (26%), Positives = 78/190 (41%), Gaps = 15/190 (7%)
Query: 3 NHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPE 62
+ L +I F + VDVGG G KAI P +G+ D + + +
Sbjct: 151 KASNLAFHEIPRLL-DFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARD 208
Query: 63 Y-------PGVKHVGGDMFQSVP-NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKV 114
V VGGDM Q VP NGD L+ I+ D + L+LL NC +++ G+V
Sbjct: 209 NLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRV 268
Query: 115 IVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFF 174
+V+E + + + L DV + G+ RT E L GF+ R V
Sbjct: 269 VVIERTISASEPSPM----SVLWDVHLFM-ACAGRHRTTEEVVDLLGRGGFAVERIVDLP 323
Query: 175 HNLWVMEFYK 184
++ +
Sbjct: 324 METRMIVAAR 333
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 2e-71
Identities = 32/191 (16%), Positives = 80/191 (41%), Gaps = 11/191 (5%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
++ +Q +LE K + +K+++DVGG +G+ A+ +P + +LP I
Sbjct: 171 HRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLV 229
Query: 61 PEYPG-------VKHVGGDMFQ-SVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGG 112
E ++ + D+++ S P DA+L IL+ +++ + K ++ GG
Sbjct: 230 NENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGG 289
Query: 113 KVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172
++++++ V+ + + + + + + + + G+ + V
Sbjct: 290 RLLILDMVIDDPENPNFDYLSHYILGAGMPFS--VLGFKEQARYKEILESLGYKDVTMVR 347
Query: 173 FFHNLWVMEFY 183
+ +L V
Sbjct: 348 KYDHLLVQAVK 358
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 3e-66
Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 16/196 (8%)
Query: 1 MYNHTTLVLQKILEAY--KGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQ 58
M Q I + E +K ++D+ S G A+ P+ + D V++
Sbjct: 144 MSPMMANPAQLIAQLVNENKIEPLK-VLDISASHGLFGIAVAQHNPNAEIFGVDWASVLE 202
Query: 59 HSPEYPG-------VKHVGGDMFQSV--PNGDAILIKWILHDWSDEHCLKLLKNCHKSIP 109
+ E + G F+ + D +L+ LH + C +LL+ ++
Sbjct: 203 VAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALA 262
Query: 110 EGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169
GKVIV + + + + ++++ P G T E+ ++ + AGFS +
Sbjct: 263 VEGKVIVFDFI---PNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQ 319
Query: 170 FVCF-FHNLWVMEFYK 184
V+ YK
Sbjct: 320 LHSLPTTQQQVIVAYK 335
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 6e-64
Identities = 22/180 (12%), Positives = 66/180 (36%), Gaps = 15/180 (8%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M + ++ + E F + ++D+ G G L + ++P + G +DLP +
Sbjct: 160 MVRLSQPMVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAA 218
Query: 61 PEYPG-------VKHVGGDMFQSVP----NGDAILIKWILHDWSDEHCLKLLKNCHKSIP 109
+ V+ ++ + D +++ LH + +++ + +
Sbjct: 219 RKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVK 278
Query: 110 EGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169
GG ++++ + ++ +++ + +M G+ + +AG +
Sbjct: 279 PGGALLILTMT---MNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE 335
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 1e-58
Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 12/180 (6%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
+ ++ K LE H K+L+D+GG+ G ++ DLP ++
Sbjct: 160 DHFYSDQSFGKALEIV-FSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMM 218
Query: 61 PEYPG-------VKHVGGDMF---QSVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIP 109
+ + G ++ P G DA+ + L +S+E + +L +SI
Sbjct: 219 RKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIG 278
Query: 110 EGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169
+ KV ++E++ + ++ K + AG
Sbjct: 279 KDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEE 338
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 1e-09
Identities = 29/188 (15%), Positives = 56/188 (29%), Gaps = 20/188 (10%)
Query: 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVI----QHSPE 62
+ ++D+G G + KYP D+ ++
Sbjct: 31 FYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG 90
Query: 63 YPGVKHVGGDMFQSVPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
VK++ D + D ++ +H DE +L K + + E G I + V
Sbjct: 91 NLKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLV 150
Query: 121 LPELPENGT--------HSKINSLADVLVMTQYPGGKER---TKHEFTTLATEAGFSGIR 169
E + + + L + + Y K ++ EAGF +
Sbjct: 151 HGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVS 210
Query: 170 FVCFFHNL 177
C +
Sbjct: 211 --CIYKYY 216
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 1e-07
Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVI----QHSPEYPGVKHVGGDMFQ 75
+ +D G +G K + +K + + H++ + P K + M
Sbjct: 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMET 151
Query: 76 -SVPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK 132
++P D I+I+W +D +K K+C +++ G + E+ + K
Sbjct: 152 ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST--GDRFLVDK 209
Query: 133 INSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169
+S +T+ + L E+G ++
Sbjct: 210 EDSS-----LTRSD-------IHYKRLFNESGVRVVK 234
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-06
Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 26/172 (15%)
Query: 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDLPHVIQHSPEYPG-- 65
LQ+ L +D G +G K + + ++ + + Y G
Sbjct: 67 LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDIT-EDFLVQAKTYLGEE 125
Query: 66 ----VKHVGGDMFQSVPNG---DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118
+ + P D I I+W++ +D+H + L+ C S+ G +++ +
Sbjct: 126 GKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD 185
Query: 119 SVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRF 170
++ E D V R + AG S +
Sbjct: 186 NMAQEGVILDDV-------DSSVC--------RDLDVVRRIICSAGLSLLAE 222
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-05
Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 8/108 (7%)
Query: 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVL 140
D I+ + H +D+ + + + +GGK++ +++ + + K A
Sbjct: 108 DTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTI---FADQDAYDKTVEAAKQR 164
Query: 141 VMTQYPGGKER----TKHEFTTLATEAGFSGIRFVCFFHNLWVMEFYK 184
Q + T+ GF + F H +WVME K
Sbjct: 165 GFHQLANDLQTEYYTRIPVMQTIFENNGFH-VTFTRLNHFVWVMEATK 211
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 184 | |||
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.97 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.96 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.96 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.96 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.96 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.96 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.95 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.95 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.95 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.94 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.94 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.94 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.94 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.94 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.93 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.91 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.91 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.91 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.91 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.9 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.9 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.89 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.89 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.89 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.89 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.89 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.89 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.89 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.89 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.88 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.88 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.88 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.88 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.88 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.88 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.88 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.87 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.87 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.87 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.87 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.87 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.87 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.87 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.87 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.86 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.86 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.86 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.86 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.86 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.86 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.86 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.86 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.85 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.85 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.85 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.85 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.85 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.84 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.84 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.84 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.83 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.83 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.83 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.83 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.83 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.83 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.82 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.82 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.82 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.82 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.82 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.81 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.81 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.81 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.8 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.8 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.79 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.79 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.79 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.79 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.79 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.79 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.79 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.79 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.78 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.78 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.78 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.78 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.77 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.77 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.77 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.77 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.77 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.76 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.76 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.75 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.74 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.74 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.74 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.73 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.73 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.73 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.73 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.73 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.72 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.72 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.72 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.71 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.7 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.7 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.7 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.7 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.7 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.69 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.68 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.68 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.68 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.68 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.68 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.67 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.67 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.67 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.67 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.67 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.66 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.66 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.66 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.65 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.65 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.65 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.64 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.64 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.64 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.64 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.63 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.63 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.63 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.63 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.63 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.62 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.62 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.62 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.62 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.62 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.62 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.62 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.62 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.61 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.61 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.6 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.6 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.59 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.59 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.58 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.58 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.58 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.58 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.58 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.58 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.58 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.58 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.57 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.57 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.57 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.57 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.56 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.56 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.56 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.56 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.56 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.56 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.55 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.55 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.55 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.55 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.54 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.54 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.53 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.52 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.52 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.52 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.52 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.52 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.51 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.51 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.51 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.5 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.5 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.5 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.5 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.5 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.5 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.49 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.49 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.49 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.49 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.48 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.48 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.48 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.48 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.46 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.45 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.45 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.45 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.44 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.43 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.43 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.43 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.42 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.42 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.42 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.42 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.42 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.4 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.4 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.4 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.39 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.38 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.38 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.38 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.37 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.37 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.37 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.37 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.36 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.36 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.36 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.36 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.36 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.36 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.35 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.33 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.32 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.29 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.29 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.25 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.23 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.23 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.22 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.21 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.19 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.17 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.16 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.15 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.14 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.12 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.12 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.12 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.12 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.11 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.11 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.1 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.1 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.1 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 99.1 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.08 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.06 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 99.06 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.04 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 99.02 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 99.0 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.96 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.96 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.9 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.88 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.85 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.85 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.84 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.84 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.81 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.8 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.78 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.77 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.75 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.69 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.66 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.6 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.59 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.57 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.46 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.46 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.4 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.4 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.38 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.38 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.37 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.35 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.34 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 98.28 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.27 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.26 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.26 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 98.25 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.18 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.16 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 97.96 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.9 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.84 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.78 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.78 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.64 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.61 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.57 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 96.82 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.68 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.24 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.75 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.13 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.05 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 94.88 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.62 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 94.45 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 94.44 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.43 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 94.29 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.26 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.22 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.02 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 93.97 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.89 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.73 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.55 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 93.31 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.16 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 92.82 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 92.79 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 92.74 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 92.56 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 92.47 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 92.07 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 91.96 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 91.96 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 91.9 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 91.87 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 91.77 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 91.72 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 91.64 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 91.47 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 91.47 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 91.43 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 91.42 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 90.88 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 90.8 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 90.79 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 90.67 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 90.5 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 90.39 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 90.31 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 90.22 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 90.21 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 90.18 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 90.13 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 90.13 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 89.59 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 89.49 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 89.49 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 89.44 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 89.39 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 89.18 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 88.75 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 88.71 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 88.6 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 88.44 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 88.09 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 88.07 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 88.05 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 86.52 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 86.13 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 86.12 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 85.75 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 85.54 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 85.25 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 85.16 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 84.72 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 84.65 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 84.21 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 84.08 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 83.94 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 83.87 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 83.8 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 83.79 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 83.39 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 83.28 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 83.17 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 83.15 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 83.04 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 82.15 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 81.45 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 80.83 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 80.05 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 80.05 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 80.02 |
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=211.48 Aligned_cols=180 Identities=51% Similarity=1.014 Sum_probs=153.0
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEE
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAIL 84 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~ 84 (184)
+......+++.++.+++..+|||||||+|.++..+++++|+.+++++|++.+++.+++.++++++.+|+++++|.+|+|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~ 264 (364)
T 3p9c_A 185 SIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTIL 264 (364)
T ss_dssp HHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEE
T ss_pred hHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEEE
Confidence 34456677777765778899999999999999999999999999999999999999988999999999998777669999
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcC
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAG 164 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 164 (184)
+.+++|+|++++..++|++++++|||||+|++.|...++..............++.++....+++.++.++|.++|+++|
T Consensus 265 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AG 344 (364)
T 3p9c_A 265 MKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAG 344 (364)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTT
T ss_pred ehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCC
Confidence 99999999999888999999999999999999998876643322111222345555553345788899999999999999
Q ss_pred CceeEEEeecCceEEEEEeC
Q 030025 165 FSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 165 f~~i~~~~~~~~~~~~~~~~ 184 (184)
|+.+++.+..+..++++++|
T Consensus 345 F~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 345 FTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp CCEEEEEEEETTEEEEEEEC
T ss_pred CceEEEEEcCCceEEEEEeC
Confidence 99999999999999999997
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-32 Score=210.57 Aligned_cols=180 Identities=54% Similarity=0.991 Sum_probs=152.3
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEE
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAIL 84 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~ 84 (184)
+......+++.++.+++..+|||||||+|.++..+++++|+.+++++|++.+++.+++.++++++.+|+++++|.+|+|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~ 266 (368)
T 3reo_A 187 STITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIF 266 (368)
T ss_dssp HHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEE
T ss_pred hhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEEE
Confidence 34445667777755778899999999999999999999999999999999999999988999999999998777669999
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcC
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAG 164 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 164 (184)
+.+++|+|++++..++|++++++|+|||+|++.|...++..............++.++....+++.++.++|.++|+++|
T Consensus 267 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AG 346 (368)
T 3reo_A 267 IKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASG 346 (368)
T ss_dssp EESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTT
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCC
Confidence 99999999999888999999999999999999998876543332222223345555554344678899999999999999
Q ss_pred CceeEEEeecCceEEEEEeC
Q 030025 165 FSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 165 f~~i~~~~~~~~~~~~~~~~ 184 (184)
|+.+++.+..+..++++++|
T Consensus 347 F~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 347 FRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp CCEEEEEEEETTEEEEEEEC
T ss_pred CeeeEEEEeCCCcEEEEEEe
Confidence 99999999999999999987
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=209.43 Aligned_cols=177 Identities=27% Similarity=0.443 Sum_probs=152.1
Q ss_pred cccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC------CCceEEEcccCc-
Q 030025 3 NHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY------PGVKHVGGDMFQ- 75 (184)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~------~~i~~~~~d~~~- 75 (184)
..+....+.+++.++ +++..+|+|||||+|.++..+++++|+++++..|.|.+++.+++. ++++++.+|+++
T Consensus 162 ~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~ 240 (353)
T 4a6d_A 162 EVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKD 240 (353)
T ss_dssp TTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTS
T ss_pred HHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccC
Confidence 344556677888887 999999999999999999999999999999999998888877653 689999999997
Q ss_pred cCCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 76 SVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 76 ~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+.+.+|+|++.+++|+|++++..++|+++++.|+|||+++|.|...++....+ .....+++.++.. .+++.||.++
T Consensus 241 ~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~-~~g~ert~~e 316 (353)
T 4a6d_A 241 PLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSLNMLVQ-TEGQERTPTH 316 (353)
T ss_dssp CCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHHHHHHS-SSCCCCCHHH
T ss_pred CCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHh-CCCcCCCHHH
Confidence 56666999999999999999999999999999999999999998876654332 2334556666654 4788999999
Q ss_pred HHHHHHHcCCceeEEEeecCceEEEEEeC
Q 030025 156 FTTLATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 156 ~~~~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
|.++|++|||+.+++++.+..+++|.|+|
T Consensus 317 ~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 317 YHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp HHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred HHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 99999999999999999988999999988
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-29 Score=194.49 Aligned_cols=178 Identities=51% Similarity=0.923 Sum_probs=145.0
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEEe
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAILI 85 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~ 85 (184)
....+.+++.++.+++..+|||||||+|.++..+++++|.++++++|++.+++.+++.++++++.+|+.++++..|+|++
T Consensus 194 ~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~ 273 (372)
T 1fp1_D 194 ATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMIL 273 (372)
T ss_dssp HHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEE
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEE
Confidence 34456777777547788999999999999999999999999999999989999999888999999999886665799999
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCC
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGF 165 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 165 (184)
.+++||+++++...+|++++++|+|||++++.|...+...............+..++. ..+++.++.++|.++|+++||
T Consensus 274 ~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~t~~e~~~ll~~aGf 352 (372)
T 1fp1_D 274 KAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGF 352 (372)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH-HHSCCCEEHHHHHHHHHHTTC
T ss_pred ecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHh-ccCCccCCHHHHHHHHHHCCC
Confidence 9999999998888999999999999999999998876543221101012233443332 224677899999999999999
Q ss_pred ceeEEEeecCc-eEEEEEeC
Q 030025 166 SGIRFVCFFHN-LWVMEFYK 184 (184)
Q Consensus 166 ~~i~~~~~~~~-~~~~~~~~ 184 (184)
+.++++....+ .++|+++|
T Consensus 353 ~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 353 SKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp SEEEEEEEETTTEEEEEEEC
T ss_pred ceEEEEEcCCCCeEEEEEeC
Confidence 99999985444 69999987
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=189.09 Aligned_cols=174 Identities=28% Similarity=0.446 Sum_probs=143.0
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-----CCceEEEcccCccCCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-----PGVKHVGGDMFQSVPN 79 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-----~~i~~~~~d~~~~~~~ 79 (184)
+....+.+++.++ +++..+|||||||+|.++..+++++|+.+++++|++.++..++.. ++++++.+|+.+++|.
T Consensus 169 ~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~ 247 (348)
T 3lst_A 169 SAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPH 247 (348)
T ss_dssp HHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCC
T ss_pred hhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCC
Confidence 3344667888888 999999999999999999999999999999999996666533221 5799999999876664
Q ss_pred CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 80 GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 80 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.|+|++.+++||+++++...+|++++++|||||+|++.|...++.... ......+..++.. .+++.++.++|.++
T Consensus 248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~-~~~~~~t~~e~~~l 322 (348)
T 3lst_A 248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLAA-RTGQERTAAELEPL 322 (348)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHHT-TSCCCCBHHHHHHH
T ss_pred CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhhc-CCCcCCCHHHHHHH
Confidence 599999999999999988899999999999999999999877654221 1223444444433 46778899999999
Q ss_pred HHHcCCceeEEEeecCceEEEEEeC
Q 030025 160 ATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 160 l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
|+++||+.+++++..+..++++++|
T Consensus 323 l~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 323 FTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred HHHCCCceEEEEECCCCcEEEEEEe
Confidence 9999999999999778889999875
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=189.38 Aligned_cols=169 Identities=37% Similarity=0.701 Sum_probs=140.2
Q ss_pred HHHh--cCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhh
Q 030025 13 LEAY--KGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILH 90 (184)
Q Consensus 13 ~~~~--~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~ 90 (184)
++.+ . +++..+|||||||+|.++..+++++|+.+++++|++.+++.+++.++++++.+|+.+++|..|+|++.+++|
T Consensus 179 ~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh 257 (352)
T 1fp2_A 179 LRDCDFV-FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILH 257 (352)
T ss_dssp HHTCHHH-HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGG
T ss_pred HHhcccc-cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhc
Confidence 5566 4 677899999999999999999999999999999998999999988889999999987766679999999999
Q ss_pred cCChHHHHHHHHHHHhhCCC---CcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCce
Q 030025 91 DWSDEHCLKLLKNCHKSIPE---GGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSG 167 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 167 (184)
|+++++...+|++++++||| ||++++.|...++....+.........+..++. . +++.++.++|.++++++||+.
T Consensus 258 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~~t~~e~~~ll~~aGf~~ 335 (352)
T 1fp2_A 258 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEWKKLFIEAGFQH 335 (352)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHHHHHHHHTTCCE
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCCCCCHHHHHHHHHHCCCCe
Confidence 99998888999999999999 999999998876542211001112233443333 2 366789999999999999999
Q ss_pred eEEEeecCceEEEEEeC
Q 030025 168 IRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 168 i~~~~~~~~~~~~~~~~ 184 (184)
++++...+..++|+++|
T Consensus 336 ~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 336 YKISPLTGFLSLIEIYP 352 (352)
T ss_dssp EEEEEEETTEEEEEEEC
T ss_pred eEEEecCCCcEEEEEeC
Confidence 99999878889999986
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=190.28 Aligned_cols=173 Identities=38% Similarity=0.666 Sum_probs=143.3
Q ss_pred HHHHHhc-CCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEEechhh
Q 030025 11 KILEAYK-GFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWIL 89 (184)
Q Consensus 11 ~l~~~~~-~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l 89 (184)
.+++.++ ++++..+|||||||+|.++..+++++|+.+++++|++.+++.+++.++++++.+|+.++++.+|+|++.+++
T Consensus 182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~vl 261 (358)
T 1zg3_A 182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVL 261 (358)
T ss_dssp HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESCG
T ss_pred HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEcccc
Confidence 5677762 266789999999999999999999999999999999999999988888999999998876667999999999
Q ss_pred hcCChHHHHHHHHHHHhhCCC---CcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCc
Q 030025 90 HDWSDEHCLKLLKNCHKSIPE---GGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFS 166 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 166 (184)
|++++++...+|++++++|+| ||++++.|...++....+.........++.++. ..+++.++.++|.++|+++||+
T Consensus 262 h~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~g~~~t~~e~~~ll~~aGf~ 340 (358)
T 1zg3_A 262 HDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLT-MFLGKERTKQEWEKLIYDAGFS 340 (358)
T ss_dssp GGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHH-HHSCCCEEHHHHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhc-cCCCCCCCHHHHHHHHHHcCCC
Confidence 999998888999999999999 999999998876543211001122334444433 2357788999999999999999
Q ss_pred eeEEEeecCceEEEEEeC
Q 030025 167 GIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 167 ~i~~~~~~~~~~~~~~~~ 184 (184)
.++++...+..++|+++|
T Consensus 341 ~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 341 SYKITPISGFKSLIEVYP 358 (358)
T ss_dssp EEEEEEETTTEEEEEEEC
T ss_pred eeEEEecCCCcEEEEEeC
Confidence 999999878889999986
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=190.13 Aligned_cols=173 Identities=25% Similarity=0.544 Sum_probs=145.7
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCccC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQSV 77 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~~~ 77 (184)
+......+++.++ +++..+|||||||+|.++..+++++|+.+++++|++.+++.++++ ++++++.+|+.+++
T Consensus 187 ~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 265 (369)
T 3gwz_A 187 SLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETI 265 (369)
T ss_dssp HHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCC
T ss_pred HhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCC
Confidence 3445677888887 889999999999999999999999999999999998888887652 67999999999866
Q ss_pred CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHH
Q 030025 78 PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEF 156 (184)
Q Consensus 78 ~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
|.. |+|++.+++|++++++..++|+++++.|+|||+|++.|...++.... . ....++.++.. .+++.++.++|
T Consensus 266 p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~-~~g~~~t~~e~ 339 (369)
T 3gwz_A 266 PDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAA----S-TLFVDLLLLVL-VGGAERSESEF 339 (369)
T ss_dssp CSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCH----H-HHHHHHHHHHH-HSCCCBCHHHH
T ss_pred CCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC----c-hhHhhHHHHhh-cCCccCCHHHH
Confidence 644 99999999999999988899999999999999999999887664221 1 23444444433 36778999999
Q ss_pred HHHHHHcCCceeEEEe-ecCceEEEEEeC
Q 030025 157 TTLATEAGFSGIRFVC-FFHNLWVMEFYK 184 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~~-~~~~~~~~~~~~ 184 (184)
.++|+++||+.+++++ ..+..++++++|
T Consensus 340 ~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 340 AALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 9999999999999998 578889999876
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=189.61 Aligned_cols=166 Identities=26% Similarity=0.434 Sum_probs=137.9
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCccCCC-C
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQSVPN-G 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~~~~~-~ 80 (184)
.+.+++.++ +++..+|||||||+|.++..+++++|+.+++++|++.+++.++++ ++++++.+|+.+++|. .
T Consensus 158 ~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~ 236 (332)
T 3i53_A 158 YTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGA 236 (332)
T ss_dssp HTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSC
T ss_pred HHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCC
Confidence 445555665 777899999999999999999999999999999998888887653 6799999999876664 4
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLA 160 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (184)
|+|++.+++|++++++..++++++++.|+|||+|++.|...++. .+ ....+..++.. .+++.++.++|.++|
T Consensus 237 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~-----~~~~d~~~~~~-~~~~~~t~~e~~~ll 308 (332)
T 3i53_A 237 GGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE--HA-----GTGMDLRMLTY-FGGKERSLAELGELA 308 (332)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-----C-----CHHHHHHHHHH-HSCCCCCHHHHHHHH
T ss_pred cEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC--Cc-----cHHHHHHHHhh-CCCCCCCHHHHHHHH
Confidence 99999999999999888899999999999999999999877654 11 12444444433 367788999999999
Q ss_pred HHcCCceeEEEeecCceEEEEEeC
Q 030025 161 TEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 161 ~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
+++||+.+++++..+ .++++++|
T Consensus 309 ~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 309 AQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHCCCEEEEEEECCC-cEEEEEee
Confidence 999999999998877 99999874
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=182.68 Aligned_cols=173 Identities=29% Similarity=0.474 Sum_probs=143.5
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCccC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQSV 77 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~~~ 77 (184)
+....+.+++.++ +++ .+|||||||+|..+..+++++|..+++++|++.+++.+++. ++++++.+|+.+++
T Consensus 153 ~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 230 (334)
T 2ip2_A 153 SNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEV 230 (334)
T ss_dssp GHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCC
T ss_pred HHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCC
Confidence 4456678888887 888 99999999999999999999999999999998788877653 57999999998866
Q ss_pred CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHH
Q 030025 78 PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEF 156 (184)
Q Consensus 78 ~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+.. |+|++.+++|++++++...+++++++.|+|||++++.|...++... .......+..++... +++.++.++|
T Consensus 231 ~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~t~~e~ 305 (334)
T 2ip2_A 231 PSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP----SPMSVLWDVHLFMAC-AGRHRTTEEV 305 (334)
T ss_dssp CSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSC----CHHHHHHHHHHHHHH-SCCCCBHHHH
T ss_pred CCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC----cchhHHhhhHhHhhC-CCcCCCHHHH
Confidence 654 9999999999999988889999999999999999999987765322 122233444443322 4677899999
Q ss_pred HHHHHHcCCceeEEEeecCceEEEEEeC
Q 030025 157 TTLATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
.++++++||+.+++++.++..++|+++|
T Consensus 306 ~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 306 VDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 9999999999999998888889999876
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=177.49 Aligned_cols=161 Identities=18% Similarity=0.201 Sum_probs=124.0
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCCCCEEEech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPNGDAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~D~i~~~~ 87 (184)
++++.+|||||||+|..+..+++++ ++++++|+|+ +.|++.|+++ .+++++++|+.+ ++++.|+|++.+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4788999999999999999999885 6789999999 9999988763 479999999998 666669999999
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhh--C---------------CCccc
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQ--Y---------------PGGKE 150 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~~~~~ 150 (184)
++||+++++...+|++++++|||||+|++.|.......... ....+.+.... . .....
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~-----~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~ 222 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG-----ELLFNMHHDFKRANGYSELEISQKRSMLENVMLT 222 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHH-----HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCC
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHH-----HHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccC
Confidence 99999988888899999999999999999998765431100 00001000000 0 00123
Q ss_pred cCHHHHHHHHHHcCCceeEEEeecCceEEEEEeC
Q 030025 151 RTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 151 ~~~~~~~~~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
++.+++.++|++|||+.++++....++..+.|.|
T Consensus 223 ~s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 223 DSVETHKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp BCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 5889999999999999999887665666566665
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=179.19 Aligned_cols=170 Identities=20% Similarity=0.420 Sum_probs=138.4
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCc-cCC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~-~~~ 78 (184)
...+.+++.++ +++..+|||||||+|.++..+++++|+.+++++|++.+++.++++ ++++++.+|+.+ +++
T Consensus 177 ~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 255 (359)
T 1x19_A 177 FAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP 255 (359)
T ss_dssp HHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC
T ss_pred hhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC
Confidence 56678888888 888999999999999999999999999999999998888877642 459999999998 566
Q ss_pred CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccc----cCHH
Q 030025 79 NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKE----RTKH 154 (184)
Q Consensus 79 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 154 (184)
+.|+|++.+++|++++++...+++++++.|+|||++++.|...++. ..+. ...... ++....+++. ++.+
T Consensus 256 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~---~~~~~~--~~~~~~~g~~~~~~~t~~ 329 (359)
T 1x19_A 256 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-ENPN---FDYLSH--YILGAGMPFSVLGFKEQA 329 (359)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-TSCC---HHHHHH--HGGGGGSSCCCCCCCCGG
T ss_pred CCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-CCch---HHHHHH--HHHhcCCCCcccCCCCHH
Confidence 5699999999999998888899999999999999999999887654 2111 111111 1111112333 8999
Q ss_pred HHHHHHHHcCCceeEEEeecCceEEEEEeC
Q 030025 155 EFTTLATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 155 ~~~~~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
+|.++++++||+.+++.... ..++++++|
T Consensus 330 e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 330 RYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp GHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 99999999999999998876 788898876
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=177.08 Aligned_cols=178 Identities=19% Similarity=0.230 Sum_probs=144.2
Q ss_pred CcccHHhHHHHHHHhcCC--CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcc
Q 030025 2 YNHTTLVLQKILEAYKGF--EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGD 72 (184)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~--~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d 72 (184)
..........+++.++ + .+..+|||+|||+|.++..+++.+|..+++++|++.+++.+++. ++++++.+|
T Consensus 145 ~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d 223 (335)
T 2r3s_A 145 SPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGS 223 (335)
T ss_dssp GGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred HHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecc
Confidence 3445556678888887 7 88899999999999999999999999999999998888877653 469999999
Q ss_pred cCc-cCCCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccc
Q 030025 73 MFQ-SVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKE 150 (184)
Q Consensus 73 ~~~-~~~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
+.+ +++.. |+|++.+++||+++++...+++++++.|+|||++++.+...++....+ ......+..++....++..
T Consensus 224 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 300 (335)
T 2r3s_A 224 AFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDA 300 (335)
T ss_dssp TTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCC
T ss_pred cccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCc
Confidence 987 66665 999999999999988888999999999999999999998776532221 1223344444443336778
Q ss_pred cCHHHHHHHHHHcCCceeEEEeecCceEEEEEe
Q 030025 151 RTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFY 183 (184)
Q Consensus 151 ~~~~~~~~~l~~aGf~~i~~~~~~~~~~~~~~~ 183 (184)
++.++|.++++++||+.++++...+..+++.++
T Consensus 301 ~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 301 YTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred CCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 899999999999999999999887766766653
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=178.57 Aligned_cols=168 Identities=11% Similarity=0.212 Sum_probs=137.8
Q ss_pred HHHHHhcCCCC-CCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCc-c--CCC
Q 030025 11 KILEAYKGFEH-IKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ-S--VPN 79 (184)
Q Consensus 11 ~l~~~~~~~~~-~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~-~--~~~ 79 (184)
.+++.++ +.+ ..+|||||||+|.++..+++++|..+++++|++.+++.++++ ++++++.+|+.+ + .+.
T Consensus 169 ~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 247 (352)
T 3mcz_A 169 DVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGG 247 (352)
T ss_dssp HHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTC
T ss_pred HHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCC
Confidence 6777877 777 899999999999999999999999999999997788777653 469999999998 4 555
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
. |+|++.+++||+++++...+++++++.|+|||++++.|...++....+ ......++.++....+++.++.++|.+
T Consensus 248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~e~~~ 324 (352)
T 3mcz_A 248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---ALSADFSLHMMVNTNHGELHPTPWIAG 324 (352)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHHHHHH
T ss_pred CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---chHHHhhHHHHhhCCCCCcCCHHHHHH
Confidence 4 999999999999998888999999999999999999998876653222 223345555554445677899999999
Q ss_pred HHHHcCCceeEEEeecCceEEEEEeC
Q 030025 159 LATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 159 ~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
+|+++||+.++.. .+..+++.+.|
T Consensus 325 ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 325 VVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred HHHHCCCceeeec--cCceEEEEEec
Confidence 9999999999843 35677777765
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-27 Score=180.93 Aligned_cols=171 Identities=18% Similarity=0.231 Sum_probs=132.1
Q ss_pred HHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCcc---CCCC-
Q 030025 12 ILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQS---VPNG- 80 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~~---~~~~- 80 (184)
++..+. ..+..+|||||||+|.++..+++++|+.+++++|++.+++.++++ ++++++.+|+.++ +|..
T Consensus 171 ~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~ 249 (363)
T 3dp7_A 171 ALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGF 249 (363)
T ss_dssp HHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCC
T ss_pred HHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCc
Confidence 444444 356789999999999999999999999999999998888877653 4799999999983 6644
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHh-hhhCCCccccCHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLV-MTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 159 (184)
|+|++.+++|+|++++...+|+++++.|||||+|++.|...+....... ........... +....+++.++.++|.++
T Consensus 250 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 328 (363)
T 3dp7_A 250 DAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETA-SYCLTQISLYFTAMANGNSKMFHSDDLIRC 328 (363)
T ss_dssp SEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHH-HHHHHHHHHHHHHSSCSSCCSCCHHHHHHH
T ss_pred CEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccch-hhHHHHhhhhHHhhhCCCCcccCHHHHHHH
Confidence 9999999999999998889999999999999999999987765321100 00000111111 111234667899999999
Q ss_pred HHHcCCceeEEEeec-CceEEEEEeC
Q 030025 160 ATEAGFSGIRFVCFF-HNLWVMEFYK 184 (184)
Q Consensus 160 l~~aGf~~i~~~~~~-~~~~~~~~~~ 184 (184)
|+++||+.+++++.. ...++++++|
T Consensus 329 l~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 329 IENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred HHHcCCeEEEEEeCCCCCceEEEEee
Confidence 999999999998654 4588888765
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=179.76 Aligned_cols=174 Identities=28% Similarity=0.513 Sum_probs=138.2
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCccC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQSV 77 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~~~ 77 (184)
+....+.+++.++ +++..+|||||||+|.++..+++.+|..+++++|++.+++.++++ ++++++.+|+.+++
T Consensus 167 ~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 245 (374)
T 1qzz_A 167 EDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPL 245 (374)
T ss_dssp STTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred hHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcC
Confidence 3445577888887 888899999999999999999999999999999997788877653 37999999998766
Q ss_pred CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee--ecCCCCCCCccccchhhhhhHhhhhCCCccccCHH
Q 030025 78 PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES--VLPELPENGTHSKINSLADVLVMTQYPGGKERTKH 154 (184)
Q Consensus 78 ~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
+.. |+|++.+++||+++++...+++++++.|+|||++++.+. ..++.. ........+..++.. .++..++.+
T Consensus 246 ~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~ 320 (374)
T 1qzz_A 246 PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGA----DRFFSTLLDLRMLTF-MGGRVRTRD 320 (374)
T ss_dssp SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHHHHHHH-HSCCCCCHH
T ss_pred CCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCC----CcchhhhcchHHHHh-CCCcCCCHH
Confidence 665 999999999999988877999999999999999999998 554321 111122333333322 256778999
Q ss_pred HHHHHHHHcCCceeEEEeecCce-----EEEEEeC
Q 030025 155 EFTTLATEAGFSGIRFVCFFHNL-----WVMEFYK 184 (184)
Q Consensus 155 ~~~~~l~~aGf~~i~~~~~~~~~-----~~~~~~~ 184 (184)
+|.++|+++||+.++++...+.. ++++++|
T Consensus 321 ~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 321 EVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp HHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred HHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 99999999999999999887766 8888864
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=179.20 Aligned_cols=174 Identities=24% Similarity=0.481 Sum_probs=140.1
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCccC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQSV 77 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~~~ 77 (184)
+....+.+++.++ +++..+|||||||+|.++..+++.+|.++++++|++.+++.++++ ++++++.+|+.+++
T Consensus 168 ~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 246 (360)
T 1tw3_A 168 QDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPL 246 (360)
T ss_dssp TTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred HHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCC
Confidence 3344567788887 888899999999999999999999999999999987788777653 37999999998866
Q ss_pred CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee-cCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 78 PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV-LPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 78 ~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+.. |+|++.+++|++++++...+++++++.|+|||++++.+.. .++... .......+..++.. .++..++.++
T Consensus 247 ~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~t~~e 321 (360)
T 1tw3_A 247 PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSF----NEQFTELDLRMLVF-LGGALRTREK 321 (360)
T ss_dssp SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCC----SHHHHHHHHHHHHH-HSCCCCBHHH
T ss_pred CCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCC----cchhhhccHHHhhh-cCCcCCCHHH
Confidence 665 9999999999999888789999999999999999999987 543211 11112333333322 2567789999
Q ss_pred HHHHHHHcCCceeEEEeecCc-----eEEEEEeC
Q 030025 156 FTTLATEAGFSGIRFVCFFHN-----LWVMEFYK 184 (184)
Q Consensus 156 ~~~~l~~aGf~~i~~~~~~~~-----~~~~~~~~ 184 (184)
|.++|+++||+.++++...+. .++++++|
T Consensus 322 ~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 322 WDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp HHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred HHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 999999999999999887665 78898875
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=158.59 Aligned_cols=174 Identities=17% Similarity=0.152 Sum_probs=130.2
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCCCC-C
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVPNG-D 81 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~~~-D 81 (184)
.+.++..+....+..+|||+|||+|.++..+++.+|..+++++|+ +.+++.++++ +++.++.+|+.+ +.+.. |
T Consensus 32 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD 111 (234)
T 3dtn_A 32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYD 111 (234)
T ss_dssp HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEE
T ss_pred HHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCce
Confidence 455566655345678999999999999999999999999999999 8888877653 489999999988 55544 9
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhh------------hhHh-hhhCCCc
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLA------------DVLV-MTQYPGG 148 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~------------~~~~-~~~~~~~ 148 (184)
+|++..++||+++++...++++++++|||||++++.+...+...... ......+ .... .......
T Consensus 112 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (234)
T 3dtn_A 112 MVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIE--NLNKTIWRQYVENSGLTEEEIAAGYERSKLD 189 (234)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHH--HHHHHHHHHHHHTSSCCHHHHHTTC----CC
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhh--hHHHHHHHHHHHhcCCCHHHHHHHHHhcccc
Confidence 99999999999988777899999999999999999998765431000 0000000 0000 0001123
Q ss_pred cccCHHHHHHHHHHcCCceeEEEeecCceEEEEEeC
Q 030025 149 KERTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 149 ~~~~~~~~~~~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
..++.+++.++|++|||+.++++.....+.++..+|
T Consensus 190 ~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 190 KDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp CCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred cccCHHHHHHHHHHcCCCceeeeeeecceeEEEEEe
Confidence 456899999999999999999998877777766554
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=152.24 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=128.7
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPN 79 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~ 79 (184)
...+++.+. ..+..+|||+|||+|.++..+++.. |..+++++|. +.+++.+++. +++.+..+|+.+ +++.
T Consensus 26 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 26 PEKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 567888887 8889999999999999999999996 7789999999 8898888764 579999999987 5554
Q ss_pred C--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHH
Q 030025 80 G--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFT 157 (184)
Q Consensus 80 ~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
. |+|++..++||+++. ..+++++.++|+|||++++.+.......... .....++.+++.
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 165 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVG 165 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHH
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHH
Confidence 3 999999999999765 4789999999999999999987655431111 112346899999
Q ss_pred HHHHHcCCceeEEEeecCceEEEEEeC
Q 030025 158 TLATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 158 ~~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
++++++||+.++.....+....+.+.|
T Consensus 166 ~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 166 LILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 999999999999988877777666654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-25 Score=159.03 Aligned_cols=172 Identities=13% Similarity=0.233 Sum_probs=126.0
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~ 76 (184)
..+...+++.++ .++. +|||+|||+|.++..+++. +..+++++|+ +.+++.++++ +++.++.+|+.+ +
T Consensus 30 ~~~~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 106 (219)
T 3dlc_A 30 PIIAENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP 106 (219)
T ss_dssp HHHHHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS
T ss_pred HHHHHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC
Confidence 445677777877 5555 9999999999999999998 7789999999 8898888764 479999999988 6
Q ss_pred CCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhh-hhhHhhhhCCCccccCH
Q 030025 77 VPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSL-ADVLVMTQYPGGKERTK 153 (184)
Q Consensus 77 ~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (184)
++.. |+|++..++||+++.. .++++++++|+|||++++.+.................. ....... ......++.
T Consensus 107 ~~~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 183 (219)
T 3dlc_A 107 IEDNYADLIVSRGSVFFWEDVA--TAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFN-RKNISQENV 183 (219)
T ss_dssp SCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHH-HHHSSHHHH
T ss_pred CCcccccEEEECchHhhccCHH--HHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhh-hhccccCCH
Confidence 6543 9999999999997654 79999999999999999987544321000000000000 0000000 001234588
Q ss_pred HHHHHHHHHcCCceeEEEeecCceEEEEEe
Q 030025 154 HEFTTLATEAGFSGIRFVCFFHNLWVMEFY 183 (184)
Q Consensus 154 ~~~~~~l~~aGf~~i~~~~~~~~~~~~~~~ 183 (184)
+++.++|+++||+.+++.......|++..+
T Consensus 184 ~~~~~~l~~aGf~~v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 184 ERFQNVLDEIGISSYEIILGDEGFWIIISK 213 (219)
T ss_dssp HHHHHHHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred HHHHHHHHHcCCCeEEEEecCCceEEEEec
Confidence 999999999999999999888888876544
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=151.74 Aligned_cols=166 Identities=16% Similarity=0.239 Sum_probs=124.7
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--CCceEEEcccCc-cCCCC-CEE
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--PGVKHVGGDMFQ-SVPNG-DAI 83 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--~~i~~~~~d~~~-~~~~~-D~i 83 (184)
...+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. .++.++.+|+.+ +.+.. |+|
T Consensus 34 ~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v 110 (220)
T 3hnr_A 34 YEDILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTI 110 (220)
T ss_dssp HHHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEE
T ss_pred HHHHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEE
Confidence 356777776 667889999999999999999987 579999999 8898888765 389999999988 55544 999
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhh-------hhCCCccccCHHHH
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVM-------TQYPGGKERTKHEF 156 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 156 (184)
++..++||+++++...++++++++|||||.+++.++........ ......... ........++.+++
T Consensus 111 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (220)
T 3hnr_A 111 VSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAY------DKTVEAAKQRGFHQLANDLQTEYYTRIPVM 184 (220)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHH------HHHHHHHHHTTCHHHHHHHHHSCCCBHHHH
T ss_pred EECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHH------HHHHHHHHhCCCccchhhcchhhcCCHHHH
Confidence 99999999998876679999999999999999998765442100 000000000 00001124488999
Q ss_pred HHHHHHcCCceeEEEeecCceEEEEEeC
Q 030025 157 TTLATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
.++++++||+++.... .+..|++.+.|
T Consensus 185 ~~~l~~aGf~v~~~~~-~~~~w~~~~~~ 211 (220)
T 3hnr_A 185 QTIFENNGFHVTFTRL-NHFVWVMEATK 211 (220)
T ss_dssp HHHHHHTTEEEEEEEC-SSSEEEEEEEE
T ss_pred HHHHHHCCCEEEEeec-cceEEEEeehh
Confidence 9999999998665554 47888887654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=155.72 Aligned_cols=159 Identities=18% Similarity=0.246 Sum_probs=125.9
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVPN 79 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~~ 79 (184)
......+++.++ ..+..+|||||||+|.++..+++.+ ..+++++|+ +.+++.++++ ++++++.+|+.+ +++.
T Consensus 41 ~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 118 (266)
T 3ujc_A 41 LEATKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPE 118 (266)
T ss_dssp HHHHHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCT
T ss_pred HHHHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCC
Confidence 455677788887 8888999999999999999999987 679999999 8888887765 689999999988 6654
Q ss_pred C--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHH
Q 030025 80 G--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFT 157 (184)
Q Consensus 80 ~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
. |+|++..++||+++++...++++++++|||||++++.++..+.... .......... ..+...++.+++.
T Consensus 119 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~ 190 (266)
T 3ujc_A 119 NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKEN-----WDDEFKEYVK---QRKYTLITVEEYA 190 (266)
T ss_dssp TCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGG-----CCHHHHHHHH---HHTCCCCCHHHHH
T ss_pred CcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCccc-----chHHHHHHHh---cCCCCCCCHHHHH
Confidence 3 9999999999997777789999999999999999999987654111 0011111111 1123467999999
Q ss_pred HHHHHcCCceeEEEeec
Q 030025 158 TLATEAGFSGIRFVCFF 174 (184)
Q Consensus 158 ~~l~~aGf~~i~~~~~~ 174 (184)
++++++||+.+++....
T Consensus 191 ~~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 191 DILTACNFKNVVSKDLS 207 (266)
T ss_dssp HHHHHTTCEEEEEEECH
T ss_pred HHHHHcCCeEEEEEeCC
Confidence 99999999999887653
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-23 Score=151.99 Aligned_cols=157 Identities=18% Similarity=0.354 Sum_probs=121.0
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~ 77 (184)
......+++.++ ..+..+|||||||+|.++..+++..+ +++++|+ +.|++.++++ +++.++.+|+.+ ++
T Consensus 23 ~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~ 99 (260)
T 1vl5_A 23 GSDLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF 99 (260)
T ss_dssp CCCHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS
T ss_pred HHHHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCC
Confidence 344677888887 78889999999999999999999864 9999999 8899888653 579999999988 66
Q ss_pred CCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHh-hhhCCCccccCHH
Q 030025 78 PNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLV-MTQYPGGKERTKH 154 (184)
Q Consensus 78 ~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 154 (184)
+.. |+|++..++||++++. .+|++++++|||||++++.+...+... .......... .........++..
T Consensus 100 ~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 171 (260)
T 1vl5_A 100 TDERFHIVTCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDNSAPEND------AFDVFYNYVEKERDYSHHRAWKKS 171 (260)
T ss_dssp CTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEBCSSH------HHHHHHHHHHHHHCTTCCCCCBHH
T ss_pred CCCCEEEEEEhhhhHhcCCHH--HHHHHHHHHcCCCCEEEEEEcCCCCCH------HHHHHHHHHHHhcCccccCCCCHH
Confidence 643 9999999999998765 789999999999999999987665421 1111111111 1111124567899
Q ss_pred HHHHHHHHcCCceeEEEee
Q 030025 155 EFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 155 ~~~~~l~~aGf~~i~~~~~ 173 (184)
+|.++|+++||+.+++...
T Consensus 172 ~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 172 DWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEEEe
Confidence 9999999999998876654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=148.79 Aligned_cols=153 Identities=18% Similarity=0.303 Sum_probs=118.5
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc---cCCCC--
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ---SVPNG-- 80 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~~~-- 80 (184)
.+...+...++.+++..+|||||||+|.++..+++. +.+++++|+ +.+++.++++ +.++..|+.+ +++..
T Consensus 27 ~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~f 102 (240)
T 3dli_A 27 LVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYL 102 (240)
T ss_dssp HHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCB
T ss_pred HHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCe
Confidence 445556666664667799999999999999999987 568999999 8999988866 8999999876 44443
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLA 160 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (184)
|+|++..++||+++++...++++++++|||||++++..+..... ...... .........++.+++.+++
T Consensus 103 D~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~--~~~~~~~~~~~~~~l~~~l 171 (240)
T 3dli_A 103 DGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL---------YSLINF--YIDPTHKKPVHPETLKFIL 171 (240)
T ss_dssp SEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH---------HHHHHH--TTSTTCCSCCCHHHHHHHH
T ss_pred eEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh---------HHHHHH--hcCccccccCCHHHHHHHH
Confidence 99999999999998766789999999999999999987653221 001111 1111234567999999999
Q ss_pred HHcCCceeEEEeec
Q 030025 161 TEAGFSGIRFVCFF 174 (184)
Q Consensus 161 ~~aGf~~i~~~~~~ 174 (184)
+++||+.+++....
T Consensus 172 ~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 172 EYLGFRDVKIEFFE 185 (240)
T ss_dssp HHHTCEEEEEEEEC
T ss_pred HHCCCeEEEEEEec
Confidence 99999998877653
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=145.93 Aligned_cols=162 Identities=15% Similarity=0.107 Sum_probs=116.2
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--CCceEEEcccCccCCC-C-CEE
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--PGVKHVGGDMFQSVPN-G-DAI 83 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--~~i~~~~~d~~~~~~~-~-D~i 83 (184)
...+++.+..+++..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. +++.++.+|+.+..+. . |+|
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v 111 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAV 111 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEE
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEE
Confidence 4556666664667789999999999999999998 569999999 8899888764 6799999999875333 3 999
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcc-----ccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTH-----SKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
++..++||+++++...++++++++|+|||.+++.+...+........ ............. ......++.+++.+
T Consensus 112 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 190 (218)
T 3ou2_A 112 FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSF-RIVKVFRSPAELTE 190 (218)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEE-EEECCCCCHHHHHH
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchh-hHhhcCCCHHHHHH
Confidence 99999999998877799999999999999999998876432111000 0000000000000 00012459999999
Q ss_pred HHHHcCCceeEEEee
Q 030025 159 LATEAGFSGIRFVCF 173 (184)
Q Consensus 159 ~l~~aGf~~i~~~~~ 173 (184)
+++++||++......
T Consensus 191 ~l~~aGf~v~~~~~~ 205 (218)
T 3ou2_A 191 RLTALGWSCSVDEVH 205 (218)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHCCCEEEeeecc
Confidence 999999995444433
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-22 Score=147.91 Aligned_cols=155 Identities=12% Similarity=0.147 Sum_probs=121.0
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCC--
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNG-- 80 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~-- 80 (184)
...+.+.+++.++ ..+..+|||||||+|.++..+++ +..+++++|+ +.+++.+++.++++++.+|+.+ +++..
T Consensus 19 ~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~f 95 (261)
T 3ege_A 19 DIRIVNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSV 95 (261)
T ss_dssp CHHHHHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCB
T ss_pred cHHHHHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCE
Confidence 3467888888888 78899999999999999999998 5789999999 9999999998899999999988 65543
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccc-hhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKI-NSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+|++..++||+++.. .++++++++|| ||++++.+...+..... +. .......... ....++.+++. +
T Consensus 96 D~v~~~~~l~~~~~~~--~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~-~ 164 (261)
T 3ege_A 96 DGVISILAIHHFSHLE--KSFQEMQRIIR-DGTIVLLTFDIRLAQRI----WLYDYFPFLWEDA---LRFLPLDEQIN-L 164 (261)
T ss_dssp SEEEEESCGGGCSSHH--HHHHHHHHHBC-SSCEEEEEECGGGCCCC----GGGGTCHHHHHHH---HTSCCHHHHHH-H
T ss_pred eEEEEcchHhhccCHH--HHHHHHHHHhC-CcEEEEEEcCCchhHHH----HHHHHHHHHhhhh---hhhCCCHHHHH-H
Confidence 9999999999997664 78999999999 99999988765332211 11 0111111111 12345678888 9
Q ss_pred HHHcCCceeEEEee
Q 030025 160 ATEAGFSGIRFVCF 173 (184)
Q Consensus 160 l~~aGf~~i~~~~~ 173 (184)
++++||+.+++...
T Consensus 165 l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 165 LQENTKRRVEAIPF 178 (261)
T ss_dssp HHHHHCSEEEEEEC
T ss_pred HHHcCCCceeEEEe
Confidence 99999999887654
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=150.50 Aligned_cols=165 Identities=16% Similarity=0.208 Sum_probs=122.9
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~ 78 (184)
...+.+++.++ +.+..+|||||||+|.++..+++.++ .+++++|+ +.+++.++++ +++.++.+|+.+..+
T Consensus 51 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 128 (287)
T 1kpg_A 51 AKIDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDE 128 (287)
T ss_dssp HHHHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCC
T ss_pred HHHHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC
Confidence 45667777877 88889999999999999999997764 59999999 8888887653 479999999976223
Q ss_pred CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCC----C-CccccchhhhhhHhhhhCCCccccCH
Q 030025 79 NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPE----N-GTHSKINSLADVLVMTQYPGGKERTK 153 (184)
Q Consensus 79 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
..|+|++..+++|+++++...+++++.++|||||++++.++..+.... . +.................+++..++.
T Consensus 129 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 208 (287)
T 1kpg_A 129 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSI 208 (287)
T ss_dssp CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred CeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCH
Confidence 339999999999997555568999999999999999999987654211 0 00000001111111112345566799
Q ss_pred HHHHHHHHHcCCceeEEEee
Q 030025 154 HEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 154 ~~~~~~l~~aGf~~i~~~~~ 173 (184)
+++.++++++||+.+++...
T Consensus 209 ~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 209 PMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHhCCcEEEEEEeC
Confidence 99999999999999988765
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-23 Score=153.83 Aligned_cols=161 Identities=14% Similarity=0.162 Sum_probs=125.1
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ- 75 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~- 75 (184)
+..+.+.+++.++ +.+..+|||||||+|.++..+++.. ..+++++|+ +.+++.++++ +++.++.+|+.+
T Consensus 46 ~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 123 (273)
T 3bus_A 46 TDRLTDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL 123 (273)
T ss_dssp HHHHHHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC
Confidence 3456778888887 8889999999999999999999987 689999999 8888877653 469999999988
Q ss_pred cCCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCH
Q 030025 76 SVPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTK 153 (184)
Q Consensus 76 ~~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
+++.. |+|++..+++|+++.+ .++++++++|||||++++.++......... .......... .......++.
T Consensus 124 ~~~~~~fD~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~ 196 (273)
T 3bus_A 124 PFEDASFDAVWALESLHHMPDRG--RALREMARVLRPGGTVAIADFVLLAPVEGA----KKEAVDAFRA-GGGVLSLGGI 196 (273)
T ss_dssp CSCTTCEEEEEEESCTTTSSCHH--HHHHHHHTTEEEEEEEEEEEEEESSCCCHH----HHHHHHHHHH-HHTCCCCCCH
T ss_pred CCCCCCccEEEEechhhhCCCHH--HHHHHHHHHcCCCeEEEEEEeeccCCCChh----HHHHHHHHHh-hcCccCCCCH
Confidence 66543 9999999999998764 789999999999999999998765421110 0011111111 1124556799
Q ss_pred HHHHHHHHHcCCceeEEEeec
Q 030025 154 HEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 154 ~~~~~~l~~aGf~~i~~~~~~ 174 (184)
+++.++++++||+.+++....
T Consensus 197 ~~~~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 197 DEYESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHcCCeEEEEEECc
Confidence 999999999999999887653
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=150.47 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=122.7
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ 75 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~ 75 (184)
.....+..+++.+. +.+..+|||||||+|.++..+++.+ ..+++++|+ +.+++.++++ +++.++.+|+.+
T Consensus 20 ~~~~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 97 (256)
T 1nkv_A 20 FTEEKYATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG 97 (256)
T ss_dssp CCHHHHHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred CCHHHHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh
Confidence 34566788888888 8889999999999999999999987 579999999 8898888653 479999999988
Q ss_pred -cCCCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCH
Q 030025 76 -SVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTK 153 (184)
Q Consensus 76 -~~~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
+.... |+|++..++||+++.. .++++++++|||||++++.++......... ..... .........++.
T Consensus 98 ~~~~~~fD~V~~~~~~~~~~~~~--~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~ 167 (256)
T 1nkv_A 98 YVANEKCDVAACVGATWIAGGFA--GAEELLAQSLKPGGIMLIGEPYWRQLPATE------EIAQA--CGVSSTSDFLTL 167 (256)
T ss_dssp CCCSSCEEEEEEESCGGGTSSSH--HHHHHHTTSEEEEEEEEEEEEEETTCCSSH------HHHHT--TTCSCGGGSCCH
T ss_pred CCcCCCCCEEEECCChHhcCCHH--HHHHHHHHHcCCCeEEEEecCcccCCCChH------HHHHH--HhcccccccCCH
Confidence 44334 9999999999998654 789999999999999999998764432110 00000 000112245689
Q ss_pred HHHHHHHHHcCCceeEEEee
Q 030025 154 HEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 154 ~~~~~~l~~aGf~~i~~~~~ 173 (184)
.++.++++++||+.+++...
T Consensus 168 ~~~~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 168 PGLVGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHHHHTTTBCCCEEEEC
T ss_pred HHHHHHHHHCCCeeEEEEeC
Confidence 99999999999999887543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=147.73 Aligned_cols=160 Identities=16% Similarity=0.325 Sum_probs=123.5
Q ss_pred cccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc
Q 030025 3 NHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ 75 (184)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~ 75 (184)
+++......+++.+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. +++.++.+|+.+
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 80 (239)
T 1xxl_A 4 HHHHHSLGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES 80 (239)
T ss_dssp --CHHHHHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB
T ss_pred cccCCCcchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccccc
Confidence 456677788889988 89999999999999999999999864 8999999 8898887653 679999999987
Q ss_pred -cCCC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHh-hhhCCCcccc
Q 030025 76 -SVPN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLV-MTQYPGGKER 151 (184)
Q Consensus 76 -~~~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 151 (184)
+++. . |+|++..++||+++.. .++++++++|||||++++.+...+... .......... .........+
T Consensus 81 ~~~~~~~fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 152 (239)
T 1xxl_A 81 LPFPDDSFDIITCRYAAHHFSDVR--KAVREVARVLKQDGRFLLVDHYAPEDP------VLDEFVNHLNRLRDPSHVRES 152 (239)
T ss_dssp CCSCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECBCSSH------HHHHHHHHHHHHHCTTCCCCC
T ss_pred CCCCCCcEEEEEECCchhhccCHH--HHHHHHHHHcCCCcEEEEEEcCCCCCh------hHHHHHHHHHHhccccccCCC
Confidence 5554 3 9999999999998764 789999999999999999987764421 1111111111 1111224567
Q ss_pred CHHHHHHHHHHcCCceeEEEee
Q 030025 152 TKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 152 ~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
+.++|.++|+++||+.+++...
T Consensus 153 ~~~~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 153 SLSEWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp BHHHHHHHHHHTTEEEEEEEEE
T ss_pred CHHHHHHHHHHCCCcEEEEEee
Confidence 9999999999999998876653
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.8e-23 Score=153.75 Aligned_cols=162 Identities=17% Similarity=0.281 Sum_probs=119.3
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~~ 80 (184)
...+..... +++..+|||||||+|.++..+++.+|..+++++|+ +.+++.++++ +++.++.+|+.+ +++..
T Consensus 26 ~~~l~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 104 (276)
T 3mgg_A 26 EKLLHHDTV-YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDS 104 (276)
T ss_dssp HHHHHTTCC-CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTT
T ss_pred HHHHhhccc-CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCC
Confidence 333333333 67889999999999999999999999999999999 8898887653 579999999987 55443
Q ss_pred --CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhh-HhhhhCCCccccCHHHHH
Q 030025 81 --DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADV-LVMTQYPGGKERTKHEFT 157 (184)
Q Consensus 81 --D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 157 (184)
|+|++..+++|+++++ .++++++++|||||++++.++........+........... .......++..++..++.
T Consensus 105 ~fD~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (276)
T 3mgg_A 105 SFDHIFVCFVLEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIY 182 (276)
T ss_dssp CEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHH
T ss_pred CeeEEEEechhhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHH
Confidence 9999999999998775 78999999999999999988754322111111111111111 111112234556778999
Q ss_pred HHHHHcCCceeEEEee
Q 030025 158 TLATEAGFSGIRFVCF 173 (184)
Q Consensus 158 ~~l~~aGf~~i~~~~~ 173 (184)
++|+++||+.+++...
T Consensus 183 ~~l~~aGf~~v~~~~~ 198 (276)
T 3mgg_A 183 PLLQESGFEKIRVEPR 198 (276)
T ss_dssp HHHHHTTCEEEEEEEE
T ss_pred HHHHHCCCCeEEEeeE
Confidence 9999999999987754
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=153.29 Aligned_cols=157 Identities=14% Similarity=0.233 Sum_probs=123.2
Q ss_pred cHHhHHHHHHHh----cCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcc
Q 030025 5 TTLVLQKILEAY----KGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGD 72 (184)
Q Consensus 5 ~~~~~~~l~~~~----~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d 72 (184)
+......+++.+ . +.+..+|||||||+|..+..+++.+ ..+++++|+ +.+++.++++ +++.++.+|
T Consensus 63 ~~~~~~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d 140 (297)
T 2o57_A 63 SLRTDEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS 140 (297)
T ss_dssp HHHHHHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECC
T ss_pred HHHHHHHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcC
Confidence 345667888888 5 8889999999999999999999986 469999999 8898888653 579999999
Q ss_pred cCc-cCCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCcc
Q 030025 73 MFQ-SVPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGK 149 (184)
Q Consensus 73 ~~~-~~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
+.+ +++.. |+|++..++||+++. ..++++++++|||||++++.++......... .......... ...
T Consensus 141 ~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~~--~~~ 210 (297)
T 2o57_A 141 FLEIPCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKS------SIQPILDRIK--LHD 210 (297)
T ss_dssp TTSCSSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGG------GGHHHHHHHT--CSS
T ss_pred cccCCCCCCCEeEEEecchhhhcCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCchH------HHHHHHHHhc--CCC
Confidence 988 66543 999999999999875 4899999999999999999998765432111 1111111111 123
Q ss_pred ccCHHHHHHHHHHcCCceeEEEee
Q 030025 150 ERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 150 ~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
..+..++.++++++||+.+++...
T Consensus 211 ~~~~~~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 211 MGSLGLYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp CCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCeEEEEEEC
Confidence 458999999999999999988764
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.1e-22 Score=149.49 Aligned_cols=165 Identities=16% Similarity=0.250 Sum_probs=125.1
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~ 78 (184)
.....+++.+. +++..+|||||||+|.++..+++.++ .+++++|+ +.+++.++++ .+++++.+|+.+. +
T Consensus 59 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~ 135 (302)
T 3hem_A 59 AKRKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-D 135 (302)
T ss_dssp HHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-C
T ss_pred HHHHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-C
Confidence 34567788887 88889999999999999999999876 79999999 8899888764 3799999999765 3
Q ss_pred CC-CEEEechhhhcCCh-------HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccc-----cchhhhhhHhhhhC
Q 030025 79 NG-DAILIKWILHDWSD-------EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHS-----KINSLADVLVMTQY 145 (184)
Q Consensus 79 ~~-D~i~~~~~l~~~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 145 (184)
.. |+|++..++||+++ +....+++++.++|||||++++.+...+......... ..............
T Consensus 136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T 3hem_A 136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215 (302)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence 33 99999999999954 4556899999999999999999988765421000000 00000122222223
Q ss_pred CCccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 146 PGGKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 146 ~~~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
+++..++.+++.++++++||+.+++....
T Consensus 216 p~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 216 PGGRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 45667899999999999999999887654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=149.91 Aligned_cols=156 Identities=15% Similarity=0.101 Sum_probs=120.3
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~ 76 (184)
......+++.++.+++..+|||||||+|.++..+++. +..+++++|+ +.+++.++++ ++++++.+|+.+ +
T Consensus 31 ~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 109 (267)
T 3kkz_A 31 PEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP 109 (267)
T ss_dssp HHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC
Confidence 3445666666654678899999999999999999998 7789999999 8888887664 569999999987 5
Q ss_pred CCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHH
Q 030025 77 VPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKH 154 (184)
Q Consensus 77 ~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
++.. |+|++..+++|+. . ..++++++++|||||++++.++......... ........ . ....++..
T Consensus 110 ~~~~~fD~i~~~~~~~~~~-~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~-~--~~~~~~~~ 177 (267)
T 3kkz_A 110 FRNEELDLIWSEGAIYNIG-F--ERGLNEWRKYLKKGGYLAVSECSWFTDERPA------EINDFWMD-A--YPEIDTIP 177 (267)
T ss_dssp CCTTCEEEEEESSCGGGTC-H--HHHHHHHGGGEEEEEEEEEEEEEESSSCCCH------HHHHHHHH-H--CTTCEEHH
T ss_pred CCCCCEEEEEEcCCceecC-H--HHHHHHHHHHcCCCCEEEEEEeeecCCCChH------HHHHHHHH-h--CCCCCCHH
Confidence 5443 9999999999993 3 3789999999999999999998754322110 11111111 1 12456899
Q ss_pred HHHHHHHHcCCceeEEEeec
Q 030025 155 EFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 155 ~~~~~l~~aGf~~i~~~~~~ 174 (184)
++.++++++||+.+++...+
T Consensus 178 ~~~~~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 178 NQVAKIHKAGYLPVATFILP 197 (267)
T ss_dssp HHHHHHHHTTEEEEEEEECC
T ss_pred HHHHHHHHCCCEEEEEEECC
Confidence 99999999999999887764
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-22 Score=148.21 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=120.2
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~ 76 (184)
......+++.+..+++..+|||||||+|.++..+++..+. +++++|+ +.+++.++++ ++++++.+|+.+ +
T Consensus 31 ~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 109 (257)
T 3f4k_A 31 PEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP 109 (257)
T ss_dssp HHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS
T ss_pred HHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC
Confidence 4556677777754778889999999999999999999875 9999999 8898887654 359999999987 5
Q ss_pred CCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHH
Q 030025 77 VPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKH 154 (184)
Q Consensus 77 ~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
++.. |+|++..++||++ . ..+++++.++|+|||++++.++......... ........ . ....++..
T Consensus 110 ~~~~~fD~v~~~~~l~~~~-~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~-~--~~~~~~~~ 177 (257)
T 3f4k_A 110 FQNEELDLIWSEGAIYNIG-F--ERGMNEWSKYLKKGGFIAVSEASWFTSERPA------EIEDFWMD-A--YPEISVIP 177 (257)
T ss_dssp SCTTCEEEEEEESCSCCCC-H--HHHHHHHHTTEEEEEEEEEEEEEESSSCCCH------HHHHHHHH-H--CTTCCBHH
T ss_pred CCCCCEEEEEecChHhhcC-H--HHHHHHHHHHcCCCcEEEEEEeeccCCCChH------HHHHHHHH-h--CCCCCCHH
Confidence 5543 9999999999994 3 3789999999999999999997654321110 11111111 1 12356899
Q ss_pred HHHHHHHHcCCceeEEEeec
Q 030025 155 EFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 155 ~~~~~l~~aGf~~i~~~~~~ 174 (184)
++.++++++||+.++....+
T Consensus 178 ~~~~~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 178 TCIDKMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHHHHHTTEEEEEEEECC
T ss_pred HHHHHHHHCCCeEEEEEECC
Confidence 99999999999999887654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=149.43 Aligned_cols=151 Identities=17% Similarity=0.263 Sum_probs=119.3
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCCCC-
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVPNG- 80 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~~~- 80 (184)
....+++.++ ..+..+|||||||+|.++..+++.. ..+++++|. +.+++.++++ +++.++.+|+.+ +++..
T Consensus 81 ~~~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (254)
T 1xtp_A 81 GSRNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNT 158 (254)
T ss_dssp HHHHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSC
T ss_pred HHHHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCC
Confidence 3466777776 7788999999999999999999886 457999999 8888887654 579999999987 55443
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+|++..++||+++++...++++++++|||||++++.++...... . .... ......++.+++.++
T Consensus 159 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------~---~~~~-----~~~~~~~~~~~~~~~ 224 (254)
T 1xtp_A 159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR------F---LVDK-----EDSSLTRSDIHYKRL 224 (254)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC------E---EEET-----TTTEEEBCHHHHHHH
T ss_pred eEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc------c---eecc-----cCCcccCCHHHHHHH
Confidence 999999999999877778999999999999999999987543221 0 0000 112335689999999
Q ss_pred HHHcCCceeEEEeec
Q 030025 160 ATEAGFSGIRFVCFF 174 (184)
Q Consensus 160 l~~aGf~~i~~~~~~ 174 (184)
|+++||+.+++....
T Consensus 225 l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 225 FNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHTCCEEEEEECT
T ss_pred HHHCCCEEEEeeecC
Confidence 999999999887654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-22 Score=151.12 Aligned_cols=166 Identities=16% Similarity=0.239 Sum_probs=123.6
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSV 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~ 77 (184)
....+.+++.++ ..+..+|||||||+|.++..+++.+ +++++++|+ +.+++.+++. +++.++.+|+.+..
T Consensus 76 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 153 (318)
T 2fk8_A 76 YAKVDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA 153 (318)
T ss_dssp HHHHHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC
T ss_pred HHHHHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC
Confidence 345667777777 7888999999999999999999886 569999999 8898888654 46999999987632
Q ss_pred CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcc--c---cchhhhhhHhhhhCCCccccC
Q 030025 78 PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTH--S---KINSLADVLVMTQYPGGKERT 152 (184)
Q Consensus 78 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~ 152 (184)
...|+|++..+++|+++++...+++++.++|||||++++.++..+........ . ..............+++..++
T Consensus 154 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 233 (318)
T 2fk8_A 154 EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 233 (318)
T ss_dssp CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCC
Confidence 33499999999999976666789999999999999999999876542100000 0 000001111111133456679
Q ss_pred HHHHHHHHHHcCCceeEEEee
Q 030025 153 KHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 153 ~~~~~~~l~~aGf~~i~~~~~ 173 (184)
.+++.++++++||+.+++...
T Consensus 234 ~~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 234 TEMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHHHhCCCEEEEEEec
Confidence 999999999999999987654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=143.85 Aligned_cols=137 Identities=15% Similarity=0.115 Sum_probs=111.7
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc-cCCCC--CEEEechhhhcCChHH
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SVPNG--DAILIKWILHDWSDEH 96 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~~~~--D~i~~~~~l~~~~~~~ 96 (184)
..+|||+|||+|.++..+++. ..+++++|+ +.+++.++++ +++.++.+|+.+ +++.. |+|++..++||++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 789999999999999999998 569999999 8999888774 789999999988 55433 9999999999998656
Q ss_pred HHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 97 CLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 97 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
...++++++++|+|||++++.++..+.... ... .......++.+++.++++++||+.+++....
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLEP---------MYH-----PVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCEE---------ECC-----SSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchhh---------hhc-----hhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 678999999999999999998866543100 000 0112345799999999999999999988664
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-22 Score=142.17 Aligned_cols=138 Identities=12% Similarity=0.059 Sum_probs=111.4
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCC-CEEEechhhhcCChH
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNG-DAILIKWILHDWSDE 95 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~-D~i~~~~~l~~~~~~ 95 (184)
+++..+|||+|||+|.++..+++. ..+++++|+ +.+++.++++.++.+..+|+.+ +.... |+|++..++||++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 556789999999999999999987 569999999 8999988877688899999987 53333 999999999999977
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcC-CceeEEEee
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAG-FSGIRFVCF 173 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~i~~~~~ 173 (184)
+...++++++++|||||++++........... .. ......++.+++.++++++| |+.+++...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------~~-------~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRD--------KL-------ARYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC--------TT-------SCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCccccc--------cc-------chhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 77899999999999999999986544321100 00 01123469999999999999 999988754
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-22 Score=142.58 Aligned_cols=144 Identities=8% Similarity=0.047 Sum_probs=111.4
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------------------CCceE
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------------------PGVKH 68 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------------------~~i~~ 68 (184)
...+++..+. +++..+|||+|||+|..+..++++ ..+++++|+ +.|++.|+++ +++++
T Consensus 10 ~l~~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ 86 (203)
T 1pjz_A 10 DLQQYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEI 86 (203)
T ss_dssp HHHHHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred HHHHHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEE
Confidence 3455566676 778899999999999999999997 569999999 8999887643 47999
Q ss_pred EEcccCc-cCC--CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhh
Q 030025 69 VGGDMFQ-SVP--NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQ 144 (184)
Q Consensus 69 ~~~d~~~-~~~--~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (184)
+++|+.+ +.+ .. |+|++..++||+++++...++++++++|||||++++.....+... .
T Consensus 87 ~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~----------~-------- 148 (203)
T 1pjz_A 87 WCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL----------L-------- 148 (203)
T ss_dssp EEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS----------S--------
T ss_pred EECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc----------c--------
Confidence 9999988 543 23 999999999999987777899999999999999665554332210 0
Q ss_pred CCCccccCHHHHHHHHHHcCCceeEEEee
Q 030025 145 YPGGKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
......++.+++.+++++ ||+.+.+...
T Consensus 149 ~~~~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 149 EGPPFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp SSCCCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred CCCCCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 001112578999999998 9998766543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-22 Score=150.42 Aligned_cols=168 Identities=16% Similarity=0.192 Sum_probs=122.0
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC-CeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH-IKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ- 75 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~- 75 (184)
++......+++.+..+.+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.++++ .++.++.+|+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 84 (284)
T 3gu3_A 5 YNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI 84 (284)
T ss_dssp CCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTC
T ss_pred cchHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhc
Confidence 345667777777754778899999999999999999999884 89999999 8888877653 379999999998
Q ss_pred cCCCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec-----CCCCC-CC--ccccchhhhhhHh-hhhC
Q 030025 76 SVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL-----PELPE-NG--THSKINSLADVLV-MTQY 145 (184)
Q Consensus 76 ~~~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~-----~~~~~-~~--~~~~~~~~~~~~~-~~~~ 145 (184)
++++. |+|++..+++|+++.+ .++++++++|||||++++.++.. .-... .. .......+..... ....
T Consensus 85 ~~~~~fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (284)
T 3gu3_A 85 ELNDKYDIAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQR 162 (284)
T ss_dssp CCSSCEEEEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHH
T ss_pred CcCCCeeEEEECChhhcCCCHH--HHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhh
Confidence 55555 9999999999998764 78999999999999999998761 10000 00 0000001111111 0111
Q ss_pred CCccccCHHHHHHHHHHcCCceeEEEee
Q 030025 146 PGGKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 146 ~~~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
.+....+..++.++++++||+.+++...
T Consensus 163 ~~~~~~~~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 163 NGKDGNIGMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp TCCCTTGGGTHHHHHHHTTCEEEEEEEC
T ss_pred hcccccHHHHHHHHHHHcCCCeEEEEEc
Confidence 1333456788999999999999977543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-22 Score=149.30 Aligned_cols=163 Identities=15% Similarity=0.115 Sum_probs=116.5
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc-cCCCC-CEEEech-hhhcCCh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SVPNG-DAILIKW-ILHDWSD 94 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~~~~-D~i~~~~-~l~~~~~ 94 (184)
++..+|||||||+|.++..+++.. .+++++|+ +.+++.++++ +++.++.+|+.+ +.+.. |+|++.. +++|+++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 466899999999999999999884 58999999 8999988764 689999999988 55444 9999998 9999974
Q ss_pred -HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcccc---------ch-----------hhhhhHhhh----------
Q 030025 95 -EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK---------IN-----------SLADVLVMT---------- 143 (184)
Q Consensus 95 -~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~---------~~-----------~~~~~~~~~---------- 143 (184)
++...++++++++|+|||++++.+...+.......... .. .........
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 45568999999999999999997554433211100000 00 000000000
Q ss_pred -hCCCccccCHHHHHHHHHHcCCceeEEEeecCceEEEEEeC
Q 030025 144 -QYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 144 -~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
.....+.++.++|.++|+++||+++++........++.+.|
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 00013356899999999999999998876665555555543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-21 Score=140.79 Aligned_cols=142 Identities=18% Similarity=0.231 Sum_probs=111.0
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCc-cCCCC--CEEEechhhhcC
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQ-SVPNG--DAILIKWILHDW 92 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~-~~~~~--D~i~~~~~l~~~ 92 (184)
++..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+ +++.. |+|++..++||+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 46789999999999999999997 569999999 8899888775 789999999988 55443 999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
+++. .++++++++|+|||++++.+......... . ..... .........++..++.++++++||+.++...
T Consensus 130 ~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---~---~~~~~--~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 130 EEPL--RALNEIKRVLKSDGYACIAILGPTAKPRE---N---SYPRL--YGKDVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SCHH--HHHHHHHHHEEEEEEEEEEEECTTCGGGG---G---GGGGG--GTCCCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCHH--HHHHHHHHHhCCCeEEEEEEcCCcchhhh---h---hhhhh--ccccccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 8764 78999999999999999988654332110 0 01110 0011123457999999999999999998775
Q ss_pred e
Q 030025 173 F 173 (184)
Q Consensus 173 ~ 173 (184)
.
T Consensus 200 ~ 200 (242)
T 3l8d_A 200 V 200 (242)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-22 Score=145.97 Aligned_cols=159 Identities=15% Similarity=0.201 Sum_probs=114.4
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-C-CceEEEcccCccCC-CC-CEE
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-P-GVKHVGGDMFQSVP-NG-DAI 83 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~-~i~~~~~d~~~~~~-~~-D~i 83 (184)
.+.+++.+....+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. + +++++.+|+.+..+ .. |+|
T Consensus 30 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v 107 (250)
T 2p7i_A 30 HPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNI 107 (250)
T ss_dssp HHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEE
T ss_pred HHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEE
Confidence 344555554344678999999999999999998865 7899999 8898888764 2 89999999987433 33 999
Q ss_pred EechhhhcCChHHHHHHHHHHH-hhCCCCcEEEEEeeecCCCCCC-----CccccchhhhhhHhhhhCCCccccCHHHHH
Q 030025 84 LIKWILHDWSDEHCLKLLKNCH-KSIPEGGKVIVVESVLPELPEN-----GTHSKINSLADVLVMTQYPGGKERTKHEFT 157 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~-~~L~pgG~l~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
++.+++||+++++ .++++++ ++|||||++++.++........ ............. . .......++.+++.
T Consensus 108 ~~~~~l~~~~~~~--~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 183 (250)
T 2p7i_A 108 VLTHVLEHIDDPV--ALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAE-F-AHGHRCTYALDTLE 183 (250)
T ss_dssp EEESCGGGCSSHH--HHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHH-H-HTTCCCCCCHHHHH
T ss_pred EEhhHHHhhcCHH--HHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhccccc-c-cccccccCCHHHHH
Confidence 9999999998764 7899999 9999999999988754321000 0000000000000 0 11234567999999
Q ss_pred HHHHHcCCceeEEEee
Q 030025 158 TLATEAGFSGIRFVCF 173 (184)
Q Consensus 158 ~~l~~aGf~~i~~~~~ 173 (184)
++++++||+.++....
T Consensus 184 ~~l~~~Gf~~~~~~~~ 199 (250)
T 2p7i_A 184 RDASRAGLQVTYRSGI 199 (250)
T ss_dssp HHHHHTTCEEEEEEEE
T ss_pred HHHHHCCCeEEEEeee
Confidence 9999999999987643
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-22 Score=140.62 Aligned_cols=148 Identities=15% Similarity=0.150 Sum_probs=118.2
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCccCCC--CCEEEe
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQSVPN--GDAILI 85 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~~~~~--~D~i~~ 85 (184)
..+++.++ ..+..+|||+|||+|.++..+++... +++++|. +.+++.+++. +++.+..+| .+++. .|+|++
T Consensus 7 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~ 81 (170)
T 3i9f_A 7 EEYLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILF 81 (170)
T ss_dssp TTTHHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEE
T ss_pred HHHHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEE
Confidence 34566677 77888999999999999999999873 9999999 8888888764 889999999 33333 399999
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCC
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGF 165 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 165 (184)
..++||+++.+ .+++++++.|+|||++++.+.......... .....++.+++.++++ ||
T Consensus 82 ~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~--Gf 140 (170)
T 3i9f_A 82 ANSFHDMDDKQ--HVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------PLSIRMDEKDYMGWFS--NF 140 (170)
T ss_dssp ESCSTTCSCHH--HHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------CGGGCCCHHHHHHHTT--TE
T ss_pred ccchhcccCHH--HHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------hHhhhcCHHHHHHHHh--Cc
Confidence 99999997654 789999999999999999987654432111 0123468999999999 99
Q ss_pred ceeEEEeecCceEEEEEe
Q 030025 166 SGIRFVCFFHNLWVMEFY 183 (184)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~ 183 (184)
+.++........+.+.+.
T Consensus 141 ~~~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 141 VVEKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEEEECSSTTEEEEEEE
T ss_pred EEEEccCCCCceEEEEEe
Confidence 999999887666665554
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=147.33 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=118.3
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc-cCCCC-CE
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SVPNG-DA 82 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~~~~-D~ 82 (184)
.+.+.+++.+. ..+..+|||||||+|.++..+++ +..+++++|+ +.|++.+++. +++.++.+|+.+ +++.. |+
T Consensus 44 ~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~ 120 (279)
T 3ccf_A 44 QYGEDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDA 120 (279)
T ss_dssp SSCCHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEE
T ss_pred HHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCE
Confidence 34556777777 77889999999999999999998 6789999999 8999888765 789999999987 55444 99
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhh------hCCCccccCHHHH
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMT------QYPGGKERTKHEF 156 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 156 (184)
|++..++||+++++ .++++++++|||||++++..+..... .............. .......++.+++
T Consensus 121 v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (279)
T 3ccf_A 121 VFSNAMLHWVKEPE--AAIASIHQALKSGGRFVAEFGGKGNI-----KYILEALYNALETLGIHNPQALNPWYFPSIGEY 193 (279)
T ss_dssp EEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECTTTT-----HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHH
T ss_pred EEEcchhhhCcCHH--HHHHHHHHhcCCCcEEEEEecCCcch-----HHHHHHHHHHHHhcCCccccCcCceeCCCHHHH
Confidence 99999999998765 78999999999999999977643221 00111111111000 0011235689999
Q ss_pred HHHHHHcCCceeEEEee
Q 030025 157 TTLATEAGFSGIRFVCF 173 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~~~ 173 (184)
.++|+++||+.+++...
T Consensus 194 ~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 194 VNILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHHTEEEEEEEEE
T ss_pred HHHHHHcCCEEEEEEEe
Confidence 99999999999876644
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=147.45 Aligned_cols=175 Identities=11% Similarity=0.132 Sum_probs=123.2
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---------CCceEEEcccC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---------PGVKHVGGDMF 74 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---------~~i~~~~~d~~ 74 (184)
.......+++.++ . +..+|||||||+|.++..+++. ..+++++|+ +.+++.++++ .+++++++|+.
T Consensus 68 ~~~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~ 143 (299)
T 3g2m_A 68 GTSEAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS 143 (299)
T ss_dssp CHHHHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT
T ss_pred ccHHHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh
Confidence 3455677777776 3 3449999999999999999987 578999999 8999888764 46999999999
Q ss_pred c-cCCCC-CEEEe-chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcccc--ch----h----------
Q 030025 75 Q-SVPNG-DAILI-KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK--IN----S---------- 135 (184)
Q Consensus 75 ~-~~~~~-D~i~~-~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~--~~----~---------- 135 (184)
+ +.+.. |+|++ ..++|++++++...+|++++++|+|||+|++..+............. .. .
T Consensus 144 ~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 223 (299)
T 3g2m_A 144 AFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLP 223 (299)
T ss_dssp BCCCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEE
T ss_pred cCCcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEec
Confidence 8 55544 98885 57788887777789999999999999999998765432100000000 00 0
Q ss_pred ---hhhhHhh----------hhCCCccccCHHHHHHHHHHcCCceeEEEeec------CceEEEEEe
Q 030025 136 ---LADVLVM----------TQYPGGKERTKHEFTTLATEAGFSGIRFVCFF------HNLWVMEFY 183 (184)
Q Consensus 136 ---~~~~~~~----------~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~------~~~~~~~~~ 183 (184)
...+... ......+.++.+++.++|+++||+++++.... ....++++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 224 AEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred cccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 0000000 00001235799999999999999999988764 335667664
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=148.25 Aligned_cols=155 Identities=10% Similarity=0.079 Sum_probs=118.9
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~ 78 (184)
..+.+++.++.+++..+|||+|||+|.++..+++++ ..+++++|+ +.+++.++++ ++++++.+|+.+ +++
T Consensus 104 ~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 182 (312)
T 3vc1_A 104 QAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFD 182 (312)
T ss_dssp HHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC
T ss_pred HHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCC
Confidence 344566666546778999999999999999999986 579999999 8899888763 479999999988 655
Q ss_pred CC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHH
Q 030025 79 NG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEF 156 (184)
Q Consensus 79 ~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
.. |+|++..++||++ ...+++++.++|||||++++.+........... . ......... ....++.+++
T Consensus 183 ~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~----~~~~~~~~~--~~~~~s~~~~ 252 (312)
T 3vc1_A 183 KGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-K----WVSQINAHF--ECNIHSRREY 252 (312)
T ss_dssp TTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-H----HHHHHHHHH--TCCCCBHHHH
T ss_pred CCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-H----HHHHHHhhh--cCCCCCHHHH
Confidence 43 9999999999995 347999999999999999999987655321111 1 111111111 1235689999
Q ss_pred HHHHHHcCCceeEEEee
Q 030025 157 TTLATEAGFSGIRFVCF 173 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~~~ 173 (184)
.++++++||+.+++...
T Consensus 253 ~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 253 LRAMADNRLVPHTIVDL 269 (312)
T ss_dssp HHHHHTTTEEEEEEEEC
T ss_pred HHHHHHCCCEEEEEEeC
Confidence 99999999999988764
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.86 E-value=6.9e-22 Score=145.25 Aligned_cols=138 Identities=16% Similarity=0.226 Sum_probs=111.3
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCC-C-CEEEechhhh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPN-G-DAILIKWILH 90 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~-~-D~i~~~~~l~ 90 (184)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.++++ .++.++.+|+.+ +.+. . |+|++..+++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999998886 569999999 8899888764 248899999877 4444 3 9999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEE
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRF 170 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~ 170 (184)
|+++++...++++++++|+|||++++.++..... ..+.. ......++.+++.++|+++||+.++.
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----------~~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG----------VILDD-----VDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS----------EEEET-----TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc----------ceecc-----cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9998777789999999999999999999876541 01110 11223458999999999999999988
Q ss_pred Eeec
Q 030025 171 VCFF 174 (184)
Q Consensus 171 ~~~~ 174 (184)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7653
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=139.53 Aligned_cols=156 Identities=14% Similarity=0.127 Sum_probs=112.8
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----------CCceEEEcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----------PGVKHVGGD 72 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------~~i~~~~~d 72 (184)
.....+.+++.+. ..+..+|||||||+|.++..+++..+..+++++|+ +.+++.++++ ++++++.+|
T Consensus 14 ~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 92 (219)
T 3jwg_A 14 NQQRLGTVVAVLK-SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS 92 (219)
T ss_dssp HHHHHHHHHHHHH-HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECC
T ss_pred hHHHHHHHHHHHh-hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCc
Confidence 3444566667766 56788999999999999999999888889999999 8899888764 189999999
Q ss_pred cCc-cCC-C-CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCcc
Q 030025 73 MFQ-SVP-N-GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGK 149 (184)
Q Consensus 73 ~~~-~~~-~-~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
+.. +.+ . .|+|++..+++|+++++...++++++++|||||.++.... .+....... .... .........
T Consensus 93 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~-~~~~~~~~~------~~~~-~~~~~~~~~ 164 (219)
T 3jwg_A 93 LVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN-KEYNFHYGN------LFEG-NLRHRDHRF 164 (219)
T ss_dssp SSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB-GGGGGCCCC------T------GGGCCTT
T ss_pred ccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc-hhhhhhhcc------cCcc-cccccCcee
Confidence 976 433 2 3999999999999988777999999999999996655443 221100000 0000 000011233
Q ss_pred ccCHHHHH----HHHHHcCCceeE
Q 030025 150 ERTKHEFT----TLATEAGFSGIR 169 (184)
Q Consensus 150 ~~~~~~~~----~~l~~aGf~~i~ 169 (184)
.++.+++. ++++++||++..
T Consensus 165 ~~~~~~l~~~~~~l~~~~Gf~v~~ 188 (219)
T 3jwg_A 165 EWTRKEFQTWAVKVAEKYGYSVRF 188 (219)
T ss_dssp SBCHHHHHHHHHHHHHHHTEEEEE
T ss_pred eecHHHHHHHHHHHHHHCCcEEEE
Confidence 46888888 889999997543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=151.28 Aligned_cols=144 Identities=19% Similarity=0.298 Sum_probs=112.6
Q ss_pred CCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC--------------CCceEEEcccCc-------c
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY--------------PGVKHVGGDMFQ-------S 76 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~--------------~~i~~~~~d~~~-------~ 76 (184)
.+..+|||||||+|.++..+++.+ +..+++++|+ +.+++.++++ +++.++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 467899999999999999999986 7889999999 8899888764 689999999986 3
Q ss_pred CCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHH
Q 030025 77 VPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKH 154 (184)
Q Consensus 77 ~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
++.. |+|++..+++|+++.. .++++++++|||||+|++.+......... ................++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNKL--ALFKEIHRVLRDGGELYFSDVYADRRLSE-------AAQQDPILYGECLGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEESSCCCH-------HHHHCHHHHHTTCTTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCCHH--HHHHHHHHHcCCCCEEEEEEeccccccCH-------hHhhhHHHhhcccccCCCHH
Confidence 4443 9999999999998764 79999999999999999998776542111 01111111112234567889
Q ss_pred HHHHHHHHcCCceeEEEe
Q 030025 155 EFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 155 ~~~~~l~~aGf~~i~~~~ 172 (184)
+|.++|+++||+.+++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999887654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-21 Score=146.19 Aligned_cols=165 Identities=17% Similarity=0.154 Sum_probs=118.3
Q ss_pred CCCCCeEEEecCCcChHHHHHH-hhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCCC-CEEEech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAIT-SKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPNG-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~-~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~-D~i~~~~ 87 (184)
+++..+|||||||+|..+..++ ...+..+++++|+ +.+++.++++ ++++++.+|+.+ +++.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 5778999999999999999986 5678899999999 8898888653 349999999988 55544 9999999
Q ss_pred hhhcCChHH-HHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhh-------hHhhhhCCC---ccccCHHHH
Q 030025 88 ILHDWSDEH-CLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLAD-------VLVMTQYPG---GKERTKHEF 156 (184)
Q Consensus 88 ~l~~~~~~~-~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---~~~~~~~~~ 156 (184)
++||+++++ ...++++++++|||||++++.+...+...... ..+...... ......... ...++.+++
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPD-SPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTT-CCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCccccc-ccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 999997554 34689999999999999999886654322111 111000000 000110101 134799999
Q ss_pred HHHHHHcCCceeEEEeec-CceEEEEEeC
Q 030025 157 TTLATEAGFSGIRFVCFF-HNLWVMEFYK 184 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~~~~-~~~~~~~~~~ 184 (184)
.++++++||+.+++.... .....+.+.|
T Consensus 275 ~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 999999999999988653 3333455544
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=143.82 Aligned_cols=154 Identities=12% Similarity=0.117 Sum_probs=116.5
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc-cCCCC-
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SVPNG- 80 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~~~~- 80 (184)
.......+++.++ ..+..+|||||||+|.++..+++.+|..+++++|+ +.|++.+++. +++.++.+|+.+ +.+..
T Consensus 18 ~~~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~f 96 (259)
T 2p35_A 18 RTRPARDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKA 96 (259)
T ss_dssp GGHHHHHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCE
T ss_pred HHHHHHHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCc
Confidence 4455677888887 77889999999999999999999988899999999 8999888764 789999999987 52223
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHh---hhh------CCCcccc
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLV---MTQ------YPGGKER 151 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~ 151 (184)
|+|++..++||+++.. .++++++++|+|||++++.++..... .. ......... +.. ......+
T Consensus 97 D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T 2p35_A 97 DLLYANAVFQWVPDHL--AVLSQLMDQLESGGVLAVQMPDNLQE---PT---HIAMHETADGGPWKDAFSGGGLRRKPLP 168 (259)
T ss_dssp EEEEEESCGGGSTTHH--HHHHHHGGGEEEEEEEEEEEECCTTS---HH---HHHHHHHHHHSTTGGGC-------CCCC
T ss_pred CEEEEeCchhhCCCHH--HHHHHHHHhcCCCeEEEEEeCCCCCc---HH---HHHHHHHhcCcchHHHhccccccccCCC
Confidence 9999999999997654 78999999999999999988643221 00 000101100 000 0123457
Q ss_pred CHHHHHHHHHHcCCce
Q 030025 152 TKHEFTTLATEAGFSG 167 (184)
Q Consensus 152 ~~~~~~~~l~~aGf~~ 167 (184)
+.+++.++|+++||++
T Consensus 169 ~~~~~~~~l~~aGf~v 184 (259)
T 2p35_A 169 PPSDYFNALSPKSSRV 184 (259)
T ss_dssp CHHHHHHHHGGGEEEE
T ss_pred CHHHHHHHHHhcCCce
Confidence 9999999999999974
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=140.40 Aligned_cols=154 Identities=11% Similarity=0.096 Sum_probs=112.0
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----------CCceEEEccc
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----------PGVKHVGGDM 73 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------~~i~~~~~d~ 73 (184)
....+.+++.+. ..+..+|||||||+|.++..+++..+..+++++|+ +.+++.++++ +++.++.+|+
T Consensus 15 ~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 93 (217)
T 3jwh_A 15 QQRMNGVVAALK-QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL 93 (217)
T ss_dssp HHHHHHHHHHHH-HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc
Confidence 345566777776 66788999999999999999999888889999999 8898888654 2799999998
Q ss_pred Cc-cCC--CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccc
Q 030025 74 FQ-SVP--NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKE 150 (184)
Q Consensus 74 ~~-~~~--~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
.. +.+ ..|+|++..+++|+++++...++++++++|||||.+++.......... . .... ...........
T Consensus 94 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~-~------~~~~-~~~~~~~~~~~ 165 (217)
T 3jwh_A 94 TYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKF-A------NLPA-GKLRHKDHRFE 165 (217)
T ss_dssp TSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHT-C------------------CCSC
T ss_pred ccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhh-c------cccc-ccccccccccc
Confidence 76 333 239999999999999887779999999999999977765532100000 0 0000 00000112234
Q ss_pred cCHHHHH----HHHHHcCCcee
Q 030025 151 RTKHEFT----TLATEAGFSGI 168 (184)
Q Consensus 151 ~~~~~~~----~~l~~aGf~~i 168 (184)
++.+++. ++++++||++.
T Consensus 166 ~~~~~l~~~~~~~~~~~Gf~v~ 187 (217)
T 3jwh_A 166 WTRSQFQNWANKITERFAYNVQ 187 (217)
T ss_dssp BCHHHHHHHHHHHHHHSSEEEE
T ss_pred cCHHHHHHHHHHHHHHcCceEE
Confidence 6888888 89999999864
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=140.82 Aligned_cols=171 Identities=13% Similarity=0.119 Sum_probs=119.1
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCC-
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPN- 79 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~- 79 (184)
+.+.+++.+ ++..+|||+|||+|.++..+++..+ +++++|+ +.+++.++++ ++++++.+|+.+ +++.
T Consensus 28 ~~~~l~~~~---~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~ 102 (227)
T 1ve3_A 28 LEPLLMKYM---KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDK 102 (227)
T ss_dssp HHHHHHHSC---CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTT
T ss_pred HHHHHHHhc---CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCC
Confidence 334444443 3478999999999999999998865 8999999 8898888764 689999999987 5553
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCc-------cccchhh-hhh---Hhh-h-hC
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGT-------HSKINSL-ADV---LVM-T-QY 145 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-------~~~~~~~-~~~---~~~-~-~~ 145 (184)
. |+|++..++++...++...++++++++|+|||++++.++..+....... ..+.... .+. ... . ..
T Consensus 103 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (227)
T 1ve3_A 103 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKS 182 (227)
T ss_dssp CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC--
T ss_pred cEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEecc
Confidence 3 9999999977766666678999999999999999998875322100000 0000000 000 000 0 00
Q ss_pred C------CccccCHHHHHHHHHHcCCceeEEEeecCceEEEEEeC
Q 030025 146 P------GGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 146 ~------~~~~~~~~~~~~~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
. ....++ .++.++|+++||+.+++.......++++++|
T Consensus 183 ~~~~~~~~~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 183 EQDSFRVRFNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp ---CCEEEEECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred chhhheeehhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 0 001122 5899999999999999999877888988875
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-21 Score=141.43 Aligned_cols=163 Identities=17% Similarity=0.142 Sum_probs=115.4
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc-cCCCC-CEEEe-chhhhcCCh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SVPNG-DAILI-KWILHDWSD 94 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~~~~-D~i~~-~~~l~~~~~ 94 (184)
++..+|||+|||+|.++..+++..+ +++++|. +.+++.+++. +++.++.+|+.+ +.+.. |+|++ ..+++|+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 5678999999999999999999865 8999999 8999888765 789999999987 55444 99995 559999864
Q ss_pred -HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcc-ccc-------------------hhhhhhHhhhhCC-------
Q 030025 95 -EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTH-SKI-------------------NSLADVLVMTQYP------- 146 (184)
Q Consensus 95 -~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~-~~~-------------------~~~~~~~~~~~~~------- 146 (184)
++...++++++++|+|||++++.+...+........ .+. .............
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 566789999999999999999987655432111000 000 0000000000000
Q ss_pred ----CccccCHHHHHHHHHHcCCceeEEEeecCceEEEEEeC
Q 030025 147 ----GGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 147 ----~~~~~~~~~~~~~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
..+.++.++|.++|+++||+++.+....+...++.++|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 11356999999999999997666555455666776664
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-21 Score=141.88 Aligned_cols=166 Identities=10% Similarity=0.054 Sum_probs=118.8
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hh------HhhhCCCC-------CCceEE
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PH------VIQHSPEY-------PGVKHV 69 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~------~~~~a~~~-------~~i~~~ 69 (184)
+......+++.++ +.+..+|||||||+|.++..+++++ |..+++++|+ +. +++.++++ ++++++
T Consensus 28 ~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~ 106 (275)
T 3bkx_A 28 QTAHRLAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVH 106 (275)
T ss_dssp HHHHHHHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEE
T ss_pred HHHHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEE
Confidence 3455677888888 8889999999999999999999995 7789999999 54 77777553 479999
Q ss_pred Ecc-cC--c-cCCC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhh-hHhh
Q 030025 70 GGD-MF--Q-SVPN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLAD-VLVM 142 (184)
Q Consensus 70 ~~d-~~--~-~~~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~ 142 (184)
.+| +. . +++. . |+|++..++||+++++ .+++.+.++++|||++++.+...+................ ....
T Consensus 107 ~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (275)
T 3bkx_A 107 FNTNLSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYA 184 (275)
T ss_dssp CSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHH
T ss_pred ECChhhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhh
Confidence 998 43 2 3343 3 9999999999998875 4788888888899999999987654311100000000000 0000
Q ss_pred hh----CCCccccCHHHHHHHHHHcCCceeEEEee
Q 030025 143 TQ----YPGGKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 143 ~~----~~~~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
.. ......++.+++.++++++||+.++....
T Consensus 185 ~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 185 IAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp HSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 00 11123679999999999999999877654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-21 Score=140.84 Aligned_cols=142 Identities=13% Similarity=0.122 Sum_probs=110.9
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCCC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~ 80 (184)
..++.... +++ .+|||||||+|.++..+++ +..+++++|+ +.+++.++++ .+++++.+|+.+ +.+..
T Consensus 57 ~~~~~~~~-~~~-~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 132 (235)
T 3lcc_A 57 VHLVDTSS-LPL-GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTEL 132 (235)
T ss_dssp HHHHHTTC-SCC-EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSC
T ss_pred HHHHHhcC-CCC-CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCC
Confidence 33444444 433 5999999999999999877 4678999999 8898888664 359999999998 33334
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+|++..++||+++++...++++++++|+|||++++.+......... ....++.+++.++
T Consensus 133 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 193 (235)
T 3lcc_A 133 FDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEV 193 (235)
T ss_dssp EEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHH
T ss_pred eeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHH
Confidence 99999999999986666799999999999999999977654332111 1112589999999
Q ss_pred HHHcCCceeEEEeec
Q 030025 160 ATEAGFSGIRFVCFF 174 (184)
Q Consensus 160 l~~aGf~~i~~~~~~ 174 (184)
|+++||+.+++...+
T Consensus 194 l~~~Gf~~~~~~~~~ 208 (235)
T 3lcc_A 194 LVPIGFKAVSVEENP 208 (235)
T ss_dssp HGGGTEEEEEEEECT
T ss_pred HHHcCCeEEEEEecC
Confidence 999999999887664
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=139.74 Aligned_cols=160 Identities=12% Similarity=0.065 Sum_probs=112.0
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCc-cCCCC--CE
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQ-SVPNG--DA 82 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~-~~~~~--D~ 82 (184)
..+.+.++ ..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. +++.++.+|+.+ +++.. |+
T Consensus 34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 44555555 557899999999999999999998643 9999999 8898888764 689999999987 55433 99
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC--CC--------CCCcccc-chhhhhh-----HhhhhCC
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE--LP--------ENGTHSK-INSLADV-----LVMTQYP 146 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~--~~--------~~~~~~~-~~~~~~~-----~~~~~~~ 146 (184)
|++..++||+++. ..++++++++|||||++++..+.... .. ....... ....... .......
T Consensus 112 v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (253)
T 3g5l_A 112 VLSSLALHYIASF--DDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDV 189 (253)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEE
T ss_pred EEEchhhhhhhhH--HHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccC
Confidence 9999999999765 47999999999999999997543210 00 0000000 0000000 0000000
Q ss_pred CccccCHHHHHHHHHHcCCceeEEEee
Q 030025 147 GGKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 147 ~~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
....++.++|.++|+++||+.+++...
T Consensus 190 ~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 190 QKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred ccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 011239999999999999999988754
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.2e-21 Score=142.48 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=112.8
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c-CCC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S-VPN 79 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~-~~~ 79 (184)
..++..++ .+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. +++.++.+|+.+ + ++.
T Consensus 59 ~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 59 DRVLAEMG--PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHTC--SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHhcC--CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 34555555 33679999999999999999988 679999999 8899888764 578999999987 3 343
Q ss_pred -C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCc-cccchhhhhhH---hhhhCCCccccCH
Q 030025 80 -G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGT-HSKINSLADVL---VMTQYPGGKERTK 153 (184)
Q Consensus 80 -~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~ 153 (184)
. |+|++..+++|++++. .++++++++|||||++++.++.......... ........... ..........++.
T Consensus 135 ~~fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADPR--SVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDP 212 (285)
T ss_dssp SCEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCH
T ss_pred CCceEEEECchhhcccCHH--HHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCH
Confidence 3 9999999999998764 7999999999999999998865422100000 00000000000 0000112356799
Q ss_pred HHHHHHHHHcCCceeEEEee
Q 030025 154 HEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 154 ~~~~~~l~~aGf~~i~~~~~ 173 (184)
+++.++++++||++++....
T Consensus 213 ~~l~~~l~~aGf~v~~~~~~ 232 (285)
T 4htf_A 213 TQVYLWLEEAGWQIMGKTGV 232 (285)
T ss_dssp HHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHCCCceeeeeeE
Confidence 99999999999999987765
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-20 Score=135.94 Aligned_cols=160 Identities=15% Similarity=0.130 Sum_probs=112.8
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCc-cCCC-C-CE
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQ-SVPN-G-DA 82 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~-~~~~-~-D~ 82 (184)
..+...++ ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. .++.++.+|+.+ +++. . |+
T Consensus 33 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 33 PALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceE
Confidence 45666666 6678899999999999999999873 239999999 8898888765 479999999987 5543 3 99
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC--CCCCCcc---------ccchhhh----hhHhhhhCCC
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE--LPENGTH---------SKINSLA----DVLVMTQYPG 147 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~--~~~~~~~---------~~~~~~~----~~~~~~~~~~ 147 (184)
|++..++||+++.. .++++++++|+|||++++..+.... ....... ....... ..........
T Consensus 111 v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (243)
T 3bkw_A 111 AYSSLALHYVEDVA--RLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVV 188 (243)
T ss_dssp EEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCC
T ss_pred EEEeccccccchHH--HHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceE
Confidence 99999999997654 7899999999999999998753210 0000000 0000000 0000000112
Q ss_pred ccccCHHHHHHHHHHcCCceeEEEee
Q 030025 148 GKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 148 ~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
...++.++|.++|+++||+.+++...
T Consensus 189 ~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 189 KHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEeccHHHHHHHHHHcCCEeeeeccC
Confidence 23358999999999999999988753
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-20 Score=138.13 Aligned_cols=155 Identities=21% Similarity=0.255 Sum_probs=114.9
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCc---ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCcc-
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSL---GNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQS- 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~---G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~~- 76 (184)
+.+...+++.+....+..+|||||||+ |.++..+.+.+|..+++++|+ +.|++.|+++ +++.++.+|+.++
T Consensus 62 ~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~ 141 (274)
T 2qe6_A 62 RKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPE 141 (274)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHH
T ss_pred hHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCch
Confidence 344555555554223558999999999 999888888889999999999 9999888764 6899999999751
Q ss_pred -----------C--CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhh
Q 030025 77 -----------V--PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMT 143 (184)
Q Consensus 77 -----------~--~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (184)
+ +..|+|++..++||+++++...+|++++++|+|||+|++.+...+. .. ........+...
T Consensus 142 ~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~----~~--~~~~~~~~~~~~ 215 (274)
T 2qe6_A 142 YILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG----LP--AQQKLARITREN 215 (274)
T ss_dssp HHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS----CH--HHHHHHHHHHHH
T ss_pred hhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc----hH--HHHHHHHHHHhc
Confidence 1 2239999999999999866678999999999999999999876522 10 111122222211
Q ss_pred hCCCccccCHHHHHHHHHHcCCceeE
Q 030025 144 QYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
.. ....++.+++.++| +||+.++
T Consensus 216 ~~-~~~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 216 LG-EGWARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp HS-CCCCBCHHHHHHTT--TTCEECT
T ss_pred CC-CCccCCHHHHHHHh--CCCeEcc
Confidence 11 34568999999999 5998775
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=140.27 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=112.3
Q ss_pred HhHHHHHHHh----cCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-
Q 030025 7 LVLQKILEAY----KGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ- 75 (184)
Q Consensus 7 ~~~~~l~~~~----~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~- 75 (184)
...+.+++.+ ..+.+..+|||+|||+|.++..+++. ..+++++|. +.+++.++++ +++.++.+|+.+
T Consensus 21 ~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~ 98 (263)
T 2yqz_A 21 EVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAI 98 (263)
T ss_dssp HHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSC
T ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccC
Confidence 3445555555 12677889999999999999999987 579999999 8888877653 689999999987
Q ss_pred cCCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCC---Cccc
Q 030025 76 SVPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYP---GGKE 150 (184)
Q Consensus 76 ~~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 150 (184)
+++.. |+|++..++||+++.. .++++++++|+|||++++. ...+.. .................... ....
T Consensus 99 ~~~~~~fD~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (263)
T 2yqz_A 99 PLPDESVHGVIVVHLWHLVPDWP--KVLAEAIRVLKPGGALLEG-WDQAEA--SPEWTLQERWRAFAAEEGFPVERGLHA 173 (263)
T ss_dssp CSCTTCEEEEEEESCGGGCTTHH--HHHHHHHHHEEEEEEEEEE-EEEECC--CHHHHHHHHHHHHHHHHTCCCCCCHHH
T ss_pred CCCCCCeeEEEECCchhhcCCHH--HHHHHHHHHCCCCcEEEEE-ecCCCc--cHHHHHHHHHHHHHHHhCCCccccccc
Confidence 55543 9999999999998654 7899999999999999997 222110 00000011111111111111 1235
Q ss_pred cCHHHHHHHHHHcCCceeEEEe
Q 030025 151 RTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 151 ~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
++.+++.++++++||+.+.+..
T Consensus 174 ~~~~~~~~~l~~~Gf~~~~~~~ 195 (263)
T 2yqz_A 174 KRLKEVEEALRRLGLKPRTREV 195 (263)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCHHHHHHHHHHcCCCcceEEE
Confidence 6889999999999999776543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=137.59 Aligned_cols=108 Identities=13% Similarity=0.127 Sum_probs=91.3
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCC--C
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNG--D 81 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~--D 81 (184)
..+.+.+.+..+ ...+|||||||+|..+..+++.+ .+++++|+ +.|++.|++++++.++++|+.+ ++++. |
T Consensus 27 ~~l~~~l~~~~~---~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD 101 (257)
T 4hg2_A 27 RALFRWLGEVAP---ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVD 101 (257)
T ss_dssp HHHHHHHHHHSS---CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEE
T ss_pred HHHHHHHHHhcC---CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCccc
Confidence 345555555533 45799999999999999999885 58999999 9999999999999999999998 77665 9
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+|++..++||++.+ +++++++|+|||||+|++.+...
T Consensus 102 ~v~~~~~~h~~~~~---~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 102 VAIAAQAMHWFDLD---RFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp EEEECSCCTTCCHH---HHHHHHHHHEEEEEEEEEEEECC
T ss_pred EEEEeeehhHhhHH---HHHHHHHHHcCCCCEEEEEECCC
Confidence 99999999988644 68999999999999999977644
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.5e-21 Score=137.37 Aligned_cols=158 Identities=16% Similarity=0.092 Sum_probs=113.8
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc-----CC-C-C
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS-----VP-N-G 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-----~~-~-~ 80 (184)
...+++.+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.++++.++.+...|+.+. .+ . .
T Consensus 41 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~f 117 (227)
T 3e8s_A 41 DQAILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDY 117 (227)
T ss_dssp HHHHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCE
T ss_pred cHHHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCc
Confidence 345677776 566799999999999999999988 569999999 89999998888899999888652 22 2 2
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccc-hh-hhhhHhhhhCCCccccCHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKI-NS-LADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
|+|++..++| ..+. ..++++++++|+|||++++.++.............. .. +..............++.++|.+
T Consensus 118 D~v~~~~~l~-~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (227)
T 3e8s_A 118 DLICANFALL-HQDI--IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLN 194 (227)
T ss_dssp EEEEEESCCC-SSCC--HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHH
T ss_pred cEEEECchhh-hhhH--HHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHH
Confidence 9999999999 5544 378999999999999999988765443221110000 00 00000000000123459999999
Q ss_pred HHHHcCCceeEEEe
Q 030025 159 LATEAGFSGIRFVC 172 (184)
Q Consensus 159 ~l~~aGf~~i~~~~ 172 (184)
+|+++||+++++..
T Consensus 195 ~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 195 ALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHTTEEEEEEEC
T ss_pred HHHHcCCeEEEEec
Confidence 99999999998875
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-20 Score=129.78 Aligned_cols=142 Identities=14% Similarity=0.098 Sum_probs=112.0
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCCC-
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPNG- 80 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~~- 80 (184)
..+++.+. ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.+++. +++.++.+|+.+ +.+..
T Consensus 22 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 98 (199)
T 2xvm_A 22 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY 98 (199)
T ss_dssp HHHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCE
T ss_pred HHHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCc
Confidence 45666776 667789999999999999999987 569999999 8888887653 479999999987 55444
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLA 160 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (184)
|+|++..++||+++++...+++++.++|+|||++++.+.......... ......++.+++.++|
T Consensus 99 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~ 162 (199)
T 2xvm_A 99 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYY 162 (199)
T ss_dssp EEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHHT
T ss_pred eEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHHh
Confidence 999999999999866667899999999999999998876654321100 0122346889999999
Q ss_pred HHcCCceeEEEe
Q 030025 161 TEAGFSGIRFVC 172 (184)
Q Consensus 161 ~~aGf~~i~~~~ 172 (184)
++ |+.++...
T Consensus 163 ~~--f~~~~~~~ 172 (199)
T 2xvm_A 163 EG--WERVKYNE 172 (199)
T ss_dssp TT--SEEEEEEC
T ss_pred cC--CeEEEecc
Confidence 86 99887654
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=135.51 Aligned_cols=162 Identities=9% Similarity=-0.019 Sum_probs=113.3
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCCC-
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPNG- 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~~- 80 (184)
...+++.+....+..+|||+|||+|..+..++.. +..+++++|. +.+++.++++ .++.++.+|+.+ +++..
T Consensus 11 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 89 (209)
T 2p8j_A 11 LYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDES 89 (209)
T ss_dssp HHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTC
T ss_pred HHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCc
Confidence 4444544443556789999999999985555544 4679999999 8899888764 679999999987 55443
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+|++..++||++.++...++++++++|+|||++++.+...++.............+.............++.+++.++
T Consensus 90 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 169 (209)
T 2p8j_A 90 MSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKY 169 (209)
T ss_dssp EEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHT
T ss_pred eeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHH
Confidence 9999999999997677789999999999999999999987654321111000000000000000001246799999999
Q ss_pred HHHcCCceeEEE
Q 030025 160 ATEAGFSGIRFV 171 (184)
Q Consensus 160 l~~aGf~~i~~~ 171 (184)
|+++||...+..
T Consensus 170 ~~~~g~~~~~~~ 181 (209)
T 2p8j_A 170 FKDMKVLFKEDR 181 (209)
T ss_dssp TTTSEEEEEEEE
T ss_pred HhhcCceeeeee
Confidence 999998766543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-20 Score=137.79 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=113.9
Q ss_pred HhHHHHHHHhcCC-CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCC
Q 030025 7 LVLQKILEAYKGF-EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 7 ~~~~~l~~~~~~~-~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~ 78 (184)
...+.+.+.+... .+..+|||+|||+|.++..+++. ..+++++|. +.+++.++++ .++.++.+|+.+ +.+
T Consensus 22 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~ 99 (246)
T 1y8c_A 22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN 99 (246)
T ss_dssp HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc
Confidence 3445555555421 36789999999999999999988 468999999 8999888764 279999999987 555
Q ss_pred CC-CEEEech-hhhcCC-hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCC---CCCcc---------ccchh------hh
Q 030025 79 NG-DAILIKW-ILHDWS-DEHCLKLLKNCHKSIPEGGKVIVVESVLPELP---ENGTH---------SKINS------LA 137 (184)
Q Consensus 79 ~~-D~i~~~~-~l~~~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~---~~~~~---------~~~~~------~~ 137 (184)
.. |+|++.. ++||++ .++...++++++++|+|||++++..+...... ..... .+... ..
T Consensus 100 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (246)
T 1y8c_A 100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSM 179 (246)
T ss_dssp CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEE
T ss_pred CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEE
Confidence 44 9999998 999994 35667899999999999999998544321100 00000 00000 00
Q ss_pred hhHhhh----------hCCCccccCHHHHHHHHHHcCCceeEEEee
Q 030025 138 DVLVMT----------QYPGGKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 138 ~~~~~~----------~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
...... .....+.++.++|.++|+++||+.+++...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 225 (246)
T 1y8c_A 180 YISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC 225 (246)
T ss_dssp EEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred EEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence 000000 000124569999999999999999988754
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.4e-20 Score=132.85 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=109.1
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----------CCceEEEcccCc-cCCCC--CEE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----------PGVKHVGGDMFQ-SVPNG--DAI 83 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------~~i~~~~~d~~~-~~~~~--D~i 83 (184)
+++..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. .++.+..+|+.+ +++.. |+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 347789999999999999999998 569999999 8888877652 147999999987 55443 999
Q ss_pred EechhhhcCChH-HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhC---------------CC
Q 030025 84 LIKWILHDWSDE-HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQY---------------PG 147 (184)
Q Consensus 84 ~~~~~l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 147 (184)
++..+++|++++ +...++++++++|+|||++++.++....... ............... ..
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK----LYRKRYLHDFPITKEEGSFLARDPETGETEFI 181 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSH----HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHH----HHHHHhhhhccchhhhcceEecccccCCccee
Confidence 999999999754 3558999999999999999999876532210 000000000000000 01
Q ss_pred ccccCHHHHHHHHHHcCCceeEEEee
Q 030025 148 GKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 148 ~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
...++.+++.++|+++||+.+++...
T Consensus 182 ~~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 182 AHHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp EECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eEeCCHHHHHHHHHHcCCEEEEEEec
Confidence 23579999999999999999987653
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.2e-20 Score=134.08 Aligned_cols=158 Identities=13% Similarity=0.041 Sum_probs=110.8
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCc-cCCC------
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQ-SVPN------ 79 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~-~~~~------ 79 (184)
.+...++.+.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.++++ .+++++++|+.+ +.+.
T Consensus 46 ~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 123 (245)
T 3ggd_A 46 DLPRFELLFNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEI 123 (245)
T ss_dssp HHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred HHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECccccccccccccccc
Confidence 3333333356778999999999999999999976 8999999 8899888654 589999999987 3221
Q ss_pred -CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcc-cc-chhhhhhH-hhhhCCCccccCHHH
Q 030025 80 -GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTH-SK-INSLADVL-VMTQYPGGKERTKHE 155 (184)
Q Consensus 80 -~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~~~~~~~~~ 155 (184)
.|+|++..++||+++++...++++++++|||||++++.+...++....... .. ........ ..........++.++
T Consensus 124 ~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (245)
T 3ggd_A 124 GDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAED 203 (245)
T ss_dssp CSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHH
T ss_pred CccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHH
Confidence 399999999999997667799999999999999999998765431000000 00 00000000 000111122468999
Q ss_pred HHHHHHHcCCceeEEEe
Q 030025 156 FTTLATEAGFSGIRFVC 172 (184)
Q Consensus 156 ~~~~l~~aGf~~i~~~~ 172 (184)
+.++| +||++++...
T Consensus 204 ~~~~~--aGf~~~~~~~ 218 (245)
T 3ggd_A 204 IELYF--PDFEILSQGE 218 (245)
T ss_dssp HHHHC--TTEEEEEEEC
T ss_pred HHHHh--CCCEEEeccc
Confidence 99999 9999887543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=129.20 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=103.7
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCC-C-CEEEechhhhcCChHHH
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPN-G-DAILIKWILHDWSDEHC 97 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~-~-D~i~~~~~l~~~~~~~~ 97 (184)
..+|||||||+|.++..+++. +++|. +.+++.+++. ++.++.+|+.+ +++. . |+|++..+++|+++..
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~- 119 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPE- 119 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHH-
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCHH-
Confidence 789999999999999988764 99999 8899888776 79999999987 5544 3 9999999999997664
Q ss_pred HHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhh-HhhhhCCCccccCHHHHHHHHHHcCCceeEEEee
Q 030025 98 LKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADV-LVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
.+++++.++|+|||.+++.++..... ........ ...........++.+++.++|+++||+.+++...
T Consensus 120 -~~l~~~~~~L~pgG~l~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 120 -RALKEAYRILKKGGYLIVGIVDRESF-------LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp -HHHHHHHHHEEEEEEEEEEEECSSSH-------HHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred -HHHHHHHHHcCCCcEEEEEEeCCccH-------HHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 78999999999999999988654221 00000000 0000011234579999999999999999988765
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-19 Score=125.92 Aligned_cols=132 Identities=16% Similarity=0.220 Sum_probs=109.3
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc-cCCC-C-CEEEe
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SVPN-G-DAILI 85 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~~~-~-D~i~~ 85 (184)
.++..+ +++..+|||+|||+|.++..+++. ..+++++|. +.+++.+++. +++.++..|+.+ +++. . |+|++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 455555 357889999999999999999987 569999999 8888888765 679999999987 5543 3 99999
Q ss_pred c-hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcC
Q 030025 86 K-WILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAG 164 (184)
Q Consensus 86 ~-~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 164 (184)
. .+++|++.++...+++++.+.|+|||.+++..... ..++.+++.++++++|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------------------------~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---------------------------RGWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---------------------------SSCCHHHHHHHHHHHT
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---------------------------CCcCHHHHHHHHHHcC
Confidence 8 78999887777899999999999999999965321 1147899999999999
Q ss_pred CceeEEEee
Q 030025 165 FSGIRFVCF 173 (184)
Q Consensus 165 f~~i~~~~~ 173 (184)
|+.++....
T Consensus 167 f~~~~~~~~ 175 (195)
T 3cgg_A 167 LELENAFES 175 (195)
T ss_dssp EEEEEEESS
T ss_pred CEEeeeecc
Confidence 999887654
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=133.59 Aligned_cols=133 Identities=8% Similarity=-0.129 Sum_probs=103.8
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC-----------------------CCCceEEEcccC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE-----------------------YPGVKHVGGDMF 74 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----------------------~~~i~~~~~d~~ 74 (184)
..+..+|||+|||+|..+..|++. +.+++|+|+ +.|++.|++ ..+++++++|+.
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 356789999999999999999987 569999999 889887742 157899999999
Q ss_pred c-cCC--CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccc
Q 030025 75 Q-SVP--NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKE 150 (184)
Q Consensus 75 ~-~~~--~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
+ +.+ .. |+|++..+++++++++...+++++.++|||||++++.....+.... ......
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~------------------~g~~~~ 205 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH------------------AGPPFY 205 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC------------------CCSSCC
T ss_pred cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC------------------CCCCCC
Confidence 8 443 33 9999999999998777778999999999999999876654332100 000112
Q ss_pred cCHHHHHHHHHHcCCceeEEEe
Q 030025 151 RTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 151 ~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
.+.+++.++|++ +|+++....
T Consensus 206 ~~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 206 VPSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CCHHHHHHHHTT-TEEEEEEEE
T ss_pred CCHHHHHHHhhC-CeEEEEEec
Confidence 589999999987 598876653
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.3e-21 Score=143.15 Aligned_cols=145 Identities=15% Similarity=0.242 Sum_probs=105.7
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------------------------------------
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------------------------------------ 63 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------------------------------------ 63 (184)
+..+|||||||+|.++..+++.++..+++++|+ +.+++.|+++
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 578999999999999999999998899999999 8888877653
Q ss_pred ----------------------------CCceEEEcccCc-c-----CC-CC-CEEEechhhhcC----ChHHHHHHHHH
Q 030025 64 ----------------------------PGVKHVGGDMFQ-S-----VP-NG-DAILIKWILHDW----SDEHCLKLLKN 103 (184)
Q Consensus 64 ----------------------------~~i~~~~~d~~~-~-----~~-~~-D~i~~~~~l~~~----~~~~~~~~l~~ 103 (184)
.++.|..+|+.. . .. .. |+|++..+++|+ +++....+|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 379999999986 2 12 23 999999999887 56677789999
Q ss_pred HHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHH--cCCceeEEEee
Q 030025 104 CHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATE--AGFSGIRFVCF 173 (184)
Q Consensus 104 ~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--aGf~~i~~~~~ 173 (184)
++++|+|||+|++....+....... .......... ....+.++++.++|.+ +||+.+++...
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~-----~~~~~~~~~~---~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRK-----TLTETIYKNY---YRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTT-----TSCHHHHHHH---HHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchhhhhhh-----cccHHHHhhh---hcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 9999999999999654322110000 0000111111 1112357899999999 99998877654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-20 Score=148.82 Aligned_cols=154 Identities=12% Similarity=0.108 Sum_probs=112.7
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc-----ccCc-cC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG-----DMFQ-SV 77 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~-----d~~~-~~ 77 (184)
....+..+++.+. .++..+|||||||+|.++..+++. ..+++++|+ +.+++.|++. ++..... +... ++
T Consensus 92 ~~~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~ 167 (416)
T 4e2x_A 92 FAMLARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRR 167 (416)
T ss_dssp HHHHHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhccc
Confidence 3455677778877 788899999999999999999987 459999999 8899988876 3333332 2222 22
Q ss_pred C-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 78 P-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 78 ~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+ .. |+|++.+++||++++. .++++++++|||||++++..+...... ......... ..+...++.++
T Consensus 168 ~~~~fD~I~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~---------~~~~~~~~~-~~~~~~~s~~~ 235 (416)
T 4e2x_A 168 TEGPANVIYAANTLCHIPYVQ--SVLEGVDALLAPDGVFVFEDPYLGDIV---------AKTSFDQIF-DEHFFLFSATS 235 (416)
T ss_dssp HHCCEEEEEEESCGGGCTTHH--HHHHHHHHHEEEEEEEEEEEECHHHHH---------HHTCGGGCS-TTCCEECCHHH
T ss_pred CCCCEEEEEECChHHhcCCHH--HHHHHHHHHcCCCeEEEEEeCChHHhh---------hhcchhhhh-hhhhhcCCHHH
Confidence 2 23 9999999999998664 799999999999999999776532210 000000000 12345679999
Q ss_pred HHHHHHHcCCceeEEEeec
Q 030025 156 FTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 156 ~~~~l~~aGf~~i~~~~~~ 174 (184)
+.++++++||+.+++...+
T Consensus 236 l~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 236 VQGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHcCCEEEEEEEcc
Confidence 9999999999999888753
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-20 Score=134.34 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=112.1
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc---cCCC-C-C
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ---SVPN-G-D 81 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~~-~-D 81 (184)
+...+++.++ .+..+|||+|||+|.++..+++. + .+++++|. +.+++.+++.. ..+..+|+.+ +++. . |
T Consensus 21 ~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD 95 (230)
T 3cc8_A 21 VNPNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFD 95 (230)
T ss_dssp CCHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEE
T ss_pred HHHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccC
Confidence 3445555554 56789999999999999999988 4 89999999 88988887653 3788899875 3333 3 9
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhh--HhhhhCCCccccCHHHHHHH
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADV--LVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 159 (184)
+|++..++||+++++ .+++++.++|+|||.+++..+........ .......+.. ...........++.+++.++
T Consensus 96 ~v~~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (230)
T 3cc8_A 96 CVIFGDVLEHLFDPW--AVIEKVKPYIKQNGVILASIPNVSHISVL--APLLAGNWTYTEYGLLDKTHIRFFTFNEMLRM 171 (230)
T ss_dssp EEEEESCGGGSSCHH--HHHHHTGGGEEEEEEEEEEEECTTSHHHH--HHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHH
T ss_pred EEEECChhhhcCCHH--HHHHHHHHHcCCCCEEEEEeCCcchHHHH--HHHhcCCceeccCCCCCcceEEEecHHHHHHH
Confidence 999999999998764 78999999999999999987654321000 0000000000 00000112345799999999
Q ss_pred HHHcCCceeEEEeec
Q 030025 160 ATEAGFSGIRFVCFF 174 (184)
Q Consensus 160 l~~aGf~~i~~~~~~ 174 (184)
++++||+.+++....
T Consensus 172 l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 172 FLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHTTEEEEEEEEEE
T ss_pred HHHcCCeEEEEEecc
Confidence 999999999887653
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-20 Score=140.28 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=92.5
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMF 74 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~ 74 (184)
..+.+.+.+.++ ..+..+|||||||+|.++..+++. ..+++++|+ +.|++.++++ .++.+..+|+.
T Consensus 43 ~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~ 119 (293)
T 3thr_A 43 AEYKAWLLGLLR-QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL 119 (293)
T ss_dssp HHHHHHHHHHHH-HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG
T ss_pred HHHHHHHHHHhc-ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh
Confidence 445566666666 567789999999999999999998 459999999 8899888542 57889999988
Q ss_pred c-c---CCC-C-CEEEec-hhhhcCCh-----HHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 75 Q-S---VPN-G-DAILIK-WILHDWSD-----EHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 75 ~-~---~~~-~-D~i~~~-~~l~~~~~-----~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+ + ++. . |+|++. .+++|+++ ++...++++++++|||||++++..+.
T Consensus 120 ~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 120 TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp GHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 7 4 443 3 999998 89999987 55678999999999999999998754
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-19 Score=129.88 Aligned_cols=106 Identities=20% Similarity=0.273 Sum_probs=86.7
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPN 79 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~ 79 (184)
.+.+.+.+.++ +..+|||+|||+|.++..+++. .+++++|+ +.+++.++++ .++.++.+|+.+ +.+.
T Consensus 22 ~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~ 95 (243)
T 3d2l_A 22 EWVAWVLEQVE---PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPE 95 (243)
T ss_dssp HHHHHHHHHSC---TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSS
T ss_pred HHHHHHHHHcC---CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCC
Confidence 34455555544 4589999999999999998887 69999999 8899888764 579999999987 5554
Q ss_pred C-CEEEech-hhhcC-ChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 80 G-DAILIKW-ILHDW-SDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 80 ~-D~i~~~~-~l~~~-~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. |+|++.. +++|+ +.++...+++++.++|+|||++++..
T Consensus 96 ~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 96 PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp CEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 4 9999986 99998 44566789999999999999999854
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=136.54 Aligned_cols=142 Identities=14% Similarity=0.059 Sum_probs=96.5
Q ss_pred CCCCeEEEecCCcChHHHH----HHhhCCCCeE--EEeec-hhHhhhCCCC-------CCceE--EEcccCc-c------
Q 030025 20 EHIKQLVDVGGSLGNTLKA----ITSKYPHIKG--INFDL-PHVIQHSPEY-------PGVKH--VGGDMFQ-S------ 76 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~----l~~~~~~~~~--~~~D~-~~~~~~a~~~-------~~i~~--~~~d~~~-~------ 76 (184)
.+..+|||||||+|.++.. ++.+++.+++ +++|. +.|++.++++ +++.+ ...+..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 3567999999999976653 4455677754 99999 8999877643 34444 4455443 2
Q ss_pred CCC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhC-CCccccCH
Q 030025 77 VPN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQY-PGGKERTK 153 (184)
Q Consensus 77 ~~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 153 (184)
++. . |+|++.+++||+++++ .+|++++++|||||++++.+...... +............. .....++.
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 201 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLIIVVSGSSG-------WDKLWKKYGSRFPQDDLCQYITS 201 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEECTTSH-------HHHHHHHHGGGSCCCTTCCCCCH
T ss_pred cCCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCCCcEEEEEEecCCcc-------HHHHHHHHHHhccCCCcccCCCH
Confidence 223 3 9999999999999875 68999999999999999986542110 10011111000000 11245789
Q ss_pred HHHHHHHHHcCCceeEE
Q 030025 154 HEFTTLATEAGFSGIRF 170 (184)
Q Consensus 154 ~~~~~~l~~aGf~~i~~ 170 (184)
++|.++|+++||+.+..
T Consensus 202 ~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 202 DDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 99999999999998764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-19 Score=134.54 Aligned_cols=153 Identities=17% Similarity=0.147 Sum_probs=107.2
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCC--------CCCceEEEcccCc
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPE--------YPGVKHVGGDMFQ 75 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~ 75 (184)
..+.+.+.... .++..+|||||||+|..+..+++.+ +..+++++|+ +.+++.+++ .++++++++|+.+
T Consensus 23 ~~~~~~l~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 100 (299)
T 3g5t_A 23 SDFYKMIDEYH--DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD 100 (299)
T ss_dssp HHHHHHHHHHC--CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred HHHHHHHHHHh--cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence 34455555543 3578999999999999999999886 8899999999 889988865 3689999999988
Q ss_pred -cCCC-------C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCC
Q 030025 76 -SVPN-------G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYP 146 (184)
Q Consensus 76 -~~~~-------~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
+++. . |+|++..++||+ +. ..++++++++|+|||.+++.+...+.....+. ......-.......
T Consensus 101 ~~~~~~~~~~~~~fD~V~~~~~l~~~-~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 174 (299)
T 3g5t_A 101 FKFLGADSVDKQKIDMITAVECAHWF-DF--EKFQRSAYANLRKDGTIAIWGYADPIFPDYPE---FDDLMIEVPYGKQG 174 (299)
T ss_dssp CGGGCTTTTTSSCEEEEEEESCGGGS-CH--HHHHHHHHHHEEEEEEEEEEEEEEEECTTCGG---GTTHHHHHHHCTTT
T ss_pred CCccccccccCCCeeEEeHhhHHHHh-CH--HHHHHHHHHhcCCCcEEEEEecCCccccCcHH---HHHHHHHhccCccc
Confidence 5443 3 999999999999 44 47999999999999999995544322111110 00111111100000
Q ss_pred Cccc---cCHHHHHHHHHHcCCc
Q 030025 147 GGKE---RTKHEFTTLATEAGFS 166 (184)
Q Consensus 147 ~~~~---~~~~~~~~~l~~aGf~ 166 (184)
.+.. ...+.+.++++++||.
T Consensus 175 ~~~~w~~p~~~~~~~~l~~~gfp 197 (299)
T 3g5t_A 175 LGPYWEQPGRSRLRNMLKDSHLD 197 (299)
T ss_dssp TGGGSCTTHHHHHHTTTTTCCCC
T ss_pred ccchhhchhhHHHHHhhhccCCC
Confidence 1111 3456778999999994
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=127.73 Aligned_cols=108 Identities=15% Similarity=0.293 Sum_probs=87.9
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCCC-
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPNG- 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~~- 80 (184)
+..++..+. ..+..+|||+|||+|..+..+++. ..+++++|+ +.+++.++++ .++.++.+|+.+ +.+..
T Consensus 30 ~~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 106 (252)
T 1wzn_A 30 VEEIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF 106 (252)
T ss_dssp HHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred HHHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCc
Confidence 445555554 566789999999999999999987 569999999 8999888754 469999999987 55544
Q ss_pred CEEEec-hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 81 DAILIK-WILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 81 D~i~~~-~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
|+|++. ..+++++.++...++++++++|+|||.+++..+
T Consensus 107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 999986 466777767778999999999999999988544
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-19 Score=132.88 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=104.6
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CC-----------------------------
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PG----------------------------- 65 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~----------------------------- 65 (184)
..+..+|||+|||+|.++..+++..+ .+++++|. +.+++.+++. ..
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 34668999999999999998888754 58999999 8888887543 11
Q ss_pred ---c-eEEEcccCc--cCCC----C-CEEEechhhhcCCh--HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcccc
Q 030025 66 ---V-KHVGGDMFQ--SVPN----G-DAILIKWILHDWSD--EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK 132 (184)
Q Consensus 66 ---i-~~~~~d~~~--~~~~----~-D~i~~~~~l~~~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 132 (184)
+ .+...|+.+ +.+. . |+|++..++|++++ ++...++++++++|||||++++.+...... .
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-----~-- 205 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY-----Y-- 205 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----E--
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce-----E--
Confidence 7 899999987 2233 3 99999999995432 255689999999999999999988543210 0
Q ss_pred chhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 133 INSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
..... ......++.+++.++|+++||+.+++....
T Consensus 206 --~~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 --MIGEQ-----KFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp --EETTE-----EEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred --EcCCc-----cccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 00000 001234589999999999999999887653
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-19 Score=135.46 Aligned_cols=154 Identities=13% Similarity=0.017 Sum_probs=108.5
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cC-CC-C-CEEEec
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SV-PN-G-DAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~-~~-~-D~i~~~ 86 (184)
+.+..+|||||||+|..+..+++. +..+++++|+ +.+++.++++ .++.++.+|+.+ ++ +. . |+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 467889999999999999998876 4569999999 8898887664 358999999987 55 33 3 999999
Q ss_pred hhhhc--CChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCC--------CCCccc-------cchh----hhhhH--hhh
Q 030025 87 WILHD--WSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELP--------ENGTHS-------KINS----LADVL--VMT 143 (184)
Q Consensus 87 ~~l~~--~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~--------~~~~~~-------~~~~----~~~~~--~~~ 143 (184)
.++|| ...++...+++++.++|+|||++++..+...... ...... .... .+... ...
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 220 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV 220 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhh
Confidence 99998 4556667899999999999999999876532100 000000 0000 00000 000
Q ss_pred hCCCccccCHHHHHHHHHHcCCceeEEEee
Q 030025 144 QYPGGKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
.......++.+++.++++++||+.++....
T Consensus 221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp SSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred cCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 000123568999999999999999988654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-18 Score=117.69 Aligned_cols=128 Identities=14% Similarity=0.175 Sum_probs=101.1
Q ss_pred HHHHHHhcCC--CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCC-C-CEEE
Q 030025 10 QKILEAYKGF--EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPN-G-DAIL 84 (184)
Q Consensus 10 ~~l~~~~~~~--~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~-~-D~i~ 84 (184)
..+++.+. . .+..+|||+|||+|.++..++++. +++++|+ +.|++. .++++++.+|+.++++. . |+|+
T Consensus 11 ~~l~~~l~-~~~~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~ 83 (170)
T 3q87_B 11 YTLMDALE-REGLEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVV 83 (170)
T ss_dssp HHHHHHHH-HHTCCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEE
T ss_pred HHHHHHHH-hhcCCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEE
Confidence 34444444 3 456799999999999999999886 9999999 889887 57899999999885543 3 9999
Q ss_pred echhhhcCChH-------HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHH
Q 030025 85 IKWILHDWSDE-------HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFT 157 (184)
Q Consensus 85 ~~~~l~~~~~~-------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
++..+++.+++ +...+++++.+.+ |||++++.+... ...+++.
T Consensus 84 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~ 133 (170)
T 3q87_B 84 FNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVL 133 (170)
T ss_dssp ECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHH
T ss_pred ECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHH
Confidence 99888865433 3346899999999 999999976422 1467889
Q ss_pred HHHHHcCCceeEEEeec
Q 030025 158 TLATEAGFSGIRFVCFF 174 (184)
Q Consensus 158 ~~l~~aGf~~i~~~~~~ 174 (184)
++++++||+.+.+....
T Consensus 134 ~~l~~~gf~~~~~~~~~ 150 (170)
T 3q87_B 134 ARLEERGYGTRILKVRK 150 (170)
T ss_dssp HHHHHTTCEEEEEEEEE
T ss_pred HHHHHCCCcEEEEEeec
Confidence 99999999988877653
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-19 Score=135.34 Aligned_cols=140 Identities=14% Similarity=0.053 Sum_probs=100.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----C-----------------------------
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----P----------------------------- 64 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~----------------------------- 64 (184)
..+..+|||||||+|.++..++... ..+++++|+ +.|++.|++. +
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 4567899999999998877665553 137999999 8899877542 1
Q ss_pred --Cce-EEEcccCc--cCC----CC-CEEEechhhhcCC--hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcccc
Q 030025 65 --GVK-HVGGDMFQ--SVP----NG-DAILIKWILHDWS--DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK 132 (184)
Q Consensus 65 --~i~-~~~~d~~~--~~~----~~-D~i~~~~~l~~~~--~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 132 (184)
++. ++.+|+.+ +++ .. |+|+++.++||+. .++...++++++++|||||+|++.+......
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-------- 203 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-------- 203 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc--------
Confidence 122 88999987 321 23 9999999999963 2455689999999999999999987543221
Q ss_pred chhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEee
Q 030025 133 INSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
. ..... ......++.+++.++|+++||+.+++...
T Consensus 204 ~--~~g~~----~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 204 Y--MVGKR----EFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp E--EETTE----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred c--eeCCe----EeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 0 00000 00112458999999999999999988754
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=125.94 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=101.7
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCC--CEEEe
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNG--DAILI 85 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~--D~i~~ 85 (184)
..+++.+....+..+|||||||+|.++..++ .+++++|+ +. ++.+..+|+.+ +++.. |+|++
T Consensus 56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~---------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL---------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS---------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC---------CceEEEeccccCCCCCCCEeEEEE
Confidence 3456665535567899999999999998763 58999998 44 68889999987 55543 99999
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCC
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGF 165 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 165 (184)
..++|+ .+. ..+++++.++|+|||++++.+.... ..+.+++.++++++||
T Consensus 122 ~~~l~~-~~~--~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf 171 (215)
T 2zfu_A 122 CLSLMG-TNI--RDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGF 171 (215)
T ss_dssp ESCCCS-SCH--HHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTE
T ss_pred ehhccc-cCH--HHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCC
Confidence 999975 443 4789999999999999999874321 1278999999999999
Q ss_pred ceeEEEeecCceEEEEEeC
Q 030025 166 SGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~ 184 (184)
+.++.........++.+.|
T Consensus 172 ~~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 172 KIVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEEECCSTTCEEEEEEE
T ss_pred EEEEEecCCCeEEEEEEEe
Confidence 9988776656666666553
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-19 Score=127.41 Aligned_cols=152 Identities=12% Similarity=0.086 Sum_probs=104.5
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhh----CCC------CCCceEEEcccCc-
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQH----SPE------YPGVKHVGGDMFQ- 75 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~----a~~------~~~i~~~~~d~~~- 75 (184)
.....+..+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.|++. +++ .+++.++++|+.+
T Consensus 15 ~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l 93 (218)
T 3mq2_A 15 FSDAEFEQLR-SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL 93 (218)
T ss_dssp CCHHHHHHHH-TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC
T ss_pred cCHHHHHHhh-ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC
Confidence 3455667777 77889999999999999999999999999999999 887764 222 2589999999988
Q ss_pred cCCCC-CEEE---echhhh--cCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCcc
Q 030025 76 SVPNG-DAIL---IKWILH--DWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGK 149 (184)
Q Consensus 76 ~~~~~-D~i~---~~~~l~--~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
+++.. |.|+ +....+ |++++ ..++++++++|||||++++.......... ....... .....
T Consensus 94 ~~~~~~d~v~~~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---------~~~~~~~--~~~~~ 160 (218)
T 3mq2_A 94 PPLSGVGELHVLMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPS---------VPEVGEH--PEPTP 160 (218)
T ss_dssp CSCCCEEEEEEESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTB---------CGGGTTC--CCCCH
T ss_pred CCCCCCCEEEEEccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEecccccccc---------ccccccC--Cccch
Confidence 55433 5544 333443 55554 37899999999999999995432211100 0000000 00112
Q ss_pred ccCHHHHHHHHHHcCCceeEEEee
Q 030025 150 ERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 150 ~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
.+..+++.++++++||++.++...
T Consensus 161 ~~~~~~l~~~l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 161 DSADEWLAPRYAEAGWKLADCRYL 184 (218)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCceeeecc
Confidence 234566888999999999887664
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-18 Score=121.91 Aligned_cols=130 Identities=12% Similarity=0.164 Sum_probs=105.4
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSV 77 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~ 77 (184)
...+...++..+. ..+..+|||+|||+|.++..+++..|..+++++|. +.+++.++++ ++++++.+|+.+..
T Consensus 25 ~~~i~~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 103 (204)
T 3e05_A 25 KQEVRAVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGL 103 (204)
T ss_dssp CHHHHHHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTC
T ss_pred hHHHHHHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhh
Confidence 3455677888887 88899999999999999999999998899999999 8899888764 67999999997632
Q ss_pred ---CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHH
Q 030025 78 ---PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKH 154 (184)
Q Consensus 78 ---~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
+..|+|++..+++ +...+++++.+.|+|||++++..... .+.+
T Consensus 104 ~~~~~~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------------------~~~~ 149 (204)
T 3e05_A 104 DDLPDPDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL-----------------------------DTLT 149 (204)
T ss_dssp TTSCCCSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH-----------------------------HHHH
T ss_pred hcCCCCCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc-----------------------------ccHH
Confidence 2349999988776 22378999999999999999965321 1357
Q ss_pred HHHHHHHHcCCceeEE
Q 030025 155 EFTTLATEAGFSGIRF 170 (184)
Q Consensus 155 ~~~~~l~~aGf~~i~~ 170 (184)
++.++++++|| .++.
T Consensus 150 ~~~~~l~~~g~-~~~~ 164 (204)
T 3e05_A 150 KAVEFLEDHGY-MVEV 164 (204)
T ss_dssp HHHHHHHHTTC-EEEE
T ss_pred HHHHHHHHCCC-ceeE
Confidence 78889999999 4443
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-18 Score=122.24 Aligned_cols=143 Identities=8% Similarity=0.039 Sum_probs=106.9
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCC-
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPN- 79 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~- 79 (184)
....++..++ +. +|||+|||+|.++..+++. ..+++++|. +.+++.++++ .++.+..+|+.+ +++.
T Consensus 20 ~l~~~~~~~~---~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~ 93 (202)
T 2kw5_A 20 FLVSVANQIP---QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVAD 93 (202)
T ss_dssp SHHHHHHHSC---SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTT
T ss_pred HHHHHHHhCC---CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcC
Confidence 4455555544 44 9999999999999999887 569999999 8898888764 379999999987 5543
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
. |+|++. +.|++.++...+++++.++|+|||.+++.++........ ... .......++.+++.+
T Consensus 94 ~fD~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~---------~~~----~~~~~~~~~~~~l~~ 158 (202)
T 2kw5_A 94 AWEGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYN---------TGG----PKDLDLLPKLETLQS 158 (202)
T ss_dssp TCSEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGT---------SCC----SSSGGGCCCHHHHHH
T ss_pred CccEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCC---------CCC----CCcceeecCHHHHHH
Confidence 3 999984 356666667799999999999999999988765432100 000 001123579999999
Q ss_pred HHHHcCCceeEEEee
Q 030025 159 LATEAGFSGIRFVCF 173 (184)
Q Consensus 159 ~l~~aGf~~i~~~~~ 173 (184)
+|+ ||+++++...
T Consensus 159 ~l~--Gf~v~~~~~~ 171 (202)
T 2kw5_A 159 ELP--SLNWLIANNL 171 (202)
T ss_dssp HCS--SSCEEEEEEE
T ss_pred Hhc--CceEEEEEEE
Confidence 999 9999987654
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=129.55 Aligned_cols=141 Identities=13% Similarity=0.148 Sum_probs=109.3
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCCC-C
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPNG-D 81 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~~-D 81 (184)
..+++.++ ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |
T Consensus 110 ~~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD 186 (286)
T 3m70_A 110 GDVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYD 186 (286)
T ss_dssp HHHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEE
T ss_pred HHHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCcc
Confidence 45556665 557899999999999999999988 569999999 8898887764 279999999988 44444 9
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHH
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLAT 161 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (184)
+|++..++||+++++...+++++.+.|+|||.+++...........+ ......++.+++.++++
T Consensus 187 ~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~ 250 (286)
T 3m70_A 187 FIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYK 250 (286)
T ss_dssp EEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTT
T ss_pred EEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhc
Confidence 99999999999888778999999999999999888765443321110 01123457888988886
Q ss_pred HcCCceeEEE
Q 030025 162 EAGFSGIRFV 171 (184)
Q Consensus 162 ~aGf~~i~~~ 171 (184)
. |+.+...
T Consensus 251 ~--~~~~~~~ 258 (286)
T 3m70_A 251 D--WEFLEYN 258 (286)
T ss_dssp T--SEEEEEE
T ss_pred C--CEEEEEE
Confidence 4 8887764
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-19 Score=135.37 Aligned_cols=150 Identities=12% Similarity=0.117 Sum_probs=102.7
Q ss_pred HHHHHHHhcC-CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----C------------------
Q 030025 9 LQKILEAYKG-FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----P------------------ 64 (184)
Q Consensus 9 ~~~l~~~~~~-~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~------------------ 64 (184)
...+.+.+.. ..+..+|||||||+|.++. ++...+..+++++|+ +.|++.|+++ +
T Consensus 58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~-l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~ 136 (289)
T 2g72_A 58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGK 136 (289)
T ss_dssp HHHHHHHHHTSCSCCSEEEEETCTTCCGGG-TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCS
T ss_pred HHHHHHHhCCCCCCCCeEEEECCCcChHHH-HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCc
Confidence 4556666641 1266899999999999554 333334569999999 8899876542 0
Q ss_pred --------------CceEEEcccCc--c-----CCC--CCEEEechhhhcCCh--HHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 65 --------------GVKHVGGDMFQ--S-----VPN--GDAILIKWILHDWSD--EHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 65 --------------~i~~~~~d~~~--~-----~~~--~D~i~~~~~l~~~~~--~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.+.++..|+.+ + ++. .|+|++..++||+.+ ++...+|++++++|||||+|++.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~ 216 (289)
T 2g72_A 137 GECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 216 (289)
T ss_dssp CCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 03466668876 2 222 399999999999543 2556899999999999999999864
Q ss_pred ecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEee
Q 030025 120 VLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
..... .. ..+ .......++.++|.++|+++||+.+++...
T Consensus 217 ~~~~~--------~~-~~~-----~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 217 LEESW--------YL-AGE-----ARLTVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp ESCCE--------EE-ETT-----EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCcce--------EE-cCC-----eeeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 43211 00 000 000123468999999999999999887654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.77 E-value=6.8e-18 Score=119.36 Aligned_cols=144 Identities=14% Similarity=0.217 Sum_probs=114.7
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CC--ceEEEcccCccC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PG--VKHVGGDMFQSV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~--i~~~~~d~~~~~ 77 (184)
...+.+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.++++ ++ +.+..+|+.+..
T Consensus 39 ~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~ 115 (194)
T 1dus_A 39 KGTKILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV 115 (194)
T ss_dssp HHHHHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC
T ss_pred hHHHHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc
Confidence 56778888887 778899999999999999999988 679999999 8888887653 33 999999998844
Q ss_pred CC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 78 PN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 78 ~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+. . |+|++..++|+ ..+....+++++.++|+|||++++..+... ...+
T Consensus 116 ~~~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~ 165 (194)
T 1dus_A 116 KDRKYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ-----------------------------GAKS 165 (194)
T ss_dssp TTSCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTH-----------------------------HHHH
T ss_pred ccCCceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCC-----------------------------ChHH
Confidence 43 3 99999888775 334556899999999999999999775321 1345
Q ss_pred HHHHHHHcCCceeEEEeecCceEEEEEeC
Q 030025 156 FTTLATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 156 ~~~~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
+.+.+++. |..+++.....+.+++.+.|
T Consensus 166 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 166 LAKYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHHHHH-hcceEEEecCCcEEEEEEee
Confidence 67777777 77788887777888877765
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-18 Score=122.84 Aligned_cols=143 Identities=13% Similarity=0.101 Sum_probs=104.0
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCC-eEEEeec-hhHhhhCCCC-CCceEEEcccCc-cCCCC--CEE
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHI-KGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SVPNG--DAI 83 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~~~~--D~i 83 (184)
..++..+. ++..+|||+|||+|.++..+ .. +++++|. +.+++.++++ +++.++.+|+.+ +++.. |+|
T Consensus 27 ~~~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v 99 (211)
T 2gs9_A 27 ERALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVV 99 (211)
T ss_dssp HHHHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEE
T ss_pred HHHHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEE
Confidence 34555554 37789999999999999876 34 8999999 8899888765 789999999987 65543 999
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhh--hCCCccccCHHHHHHHHH
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMT--QYPGGKERTKHEFTTLAT 161 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~ 161 (184)
++..++||+++.. .+++++.++|||||.+++.++..... +........... .....+.++.+++.++|+
T Consensus 100 ~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~ 170 (211)
T 2gs9_A 100 LLFTTLEFVEDVE--RVLLEARRVLRPGGALVVGVLEALSP-------WAALYRRLGEKGVLPWAQARFLAREDLKALLG 170 (211)
T ss_dssp EEESCTTTCSCHH--HHHHHHHHHEEEEEEEEEEEECTTSH-------HHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC
T ss_pred EEcChhhhcCCHH--HHHHHHHHHcCCCCEEEEEecCCcCc-------HHHHHHHHhhccCccccccccCCHHHHHHHhc
Confidence 9999999998654 78999999999999999988754321 000000000000 001234679999999999
Q ss_pred HcCCceeEEEe
Q 030025 162 EAGFSGIRFVC 172 (184)
Q Consensus 162 ~aGf~~i~~~~ 172 (184)
| .++...
T Consensus 171 --G--~~~~~~ 177 (211)
T 2gs9_A 171 --P--PEAEGE 177 (211)
T ss_dssp --S--CSEEEE
T ss_pred --C--cceeEE
Confidence 8 444443
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-18 Score=126.36 Aligned_cols=158 Identities=18% Similarity=0.237 Sum_probs=111.6
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCc--ChHHHHHHh-hCCCCeEEEeec-hhHhhhCCCC------CCceEEEccc
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSL--GNTLKAITS-KYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDM 73 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~--G~~~~~l~~-~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~ 73 (184)
.++.+...++..+..-....+|||||||+ +.++..+++ ..|..+++++|. +.|++.|+++ .++.|+++|+
T Consensus 61 ~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~ 140 (277)
T 3giw_A 61 ANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADM 140 (277)
T ss_dssp HHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCT
T ss_pred HHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecc
Confidence 34566677777776123568999999997 444555554 579999999999 9999999764 2589999999
Q ss_pred Ccc---CC-----C-CC-----EEEechhhhcCChHH-HHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhh
Q 030025 74 FQS---VP-----N-GD-----AILIKWILHDWSDEH-CLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLAD 138 (184)
Q Consensus 74 ~~~---~~-----~-~D-----~i~~~~~l~~~~~~~-~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 138 (184)
.++ +. . .| .|+++.+|||+++++ ...+++++++.|+|||+|++++...+... ........
T Consensus 141 ~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p-----~~~~~~~~ 215 (277)
T 3giw_A 141 LDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP-----QEVGRVAR 215 (277)
T ss_dssp TCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH-----HHHHHHHH
T ss_pred cChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH-----HHHHHHHH
Confidence 873 11 1 14 688999999999864 36899999999999999999886643210 01111222
Q ss_pred hHhhhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 139 VLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
.+.... .....++.+++..+|. ||+.++
T Consensus 216 ~~~~~g-~p~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 216 EYAARN-MPMRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHTT-CCCCCCCHHHHHHTTT--TSEECT
T ss_pred HHHhcC-CCCccCCHHHHHHHhC--CCcccC
Confidence 222221 1345689999999995 999664
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-17 Score=122.30 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=105.6
Q ss_pred HhHHHH---HHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhC----CCCCCceEEEcccCc---
Q 030025 7 LVLQKI---LEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHS----PEYPGVKHVGGDMFQ--- 75 (184)
Q Consensus 7 ~~~~~l---~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a----~~~~~i~~~~~d~~~--- 75 (184)
.+...+ ++.++ +.+..+|||+|||+|.++..+++..+..+++++|. +.+++.+ +..+++.++.+|+.+
T Consensus 58 ~~~~~i~~~l~~~~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~ 136 (230)
T 1fbn_A 58 KLAAAIIKGLKVMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQE 136 (230)
T ss_dssp HHHHHHHTTCCCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGG
T ss_pred HHHHHHHhcccccC-CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCccc
Confidence 334566 44555 67888999999999999999999987789999999 8787654 334789999999976
Q ss_pred --cCCCC-CEEEechhhhcCChH-HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCcccc
Q 030025 76 --SVPNG-DAILIKWILHDWSDE-HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKER 151 (184)
Q Consensus 76 --~~~~~-D~i~~~~~l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
+++.. |+|+ |+++++ ....+++++.+.|+|||++++. .......... .....
T Consensus 137 ~~~~~~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~------------------~~~~~ 192 (230)
T 1fbn_A 137 YANIVEKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTK------------------DPKEI 192 (230)
T ss_dssp GTTTSCCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSS------------------CHHHH
T ss_pred ccccCccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCC------------------CHHHh
Confidence 22233 9988 444433 3346799999999999999997 2211110000 00011
Q ss_pred CHHHHHHHHHHcCCceeEEEeecCc---eEEEEEe
Q 030025 152 TKHEFTTLATEAGFSGIRFVCFFHN---LWVMEFY 183 (184)
Q Consensus 152 ~~~~~~~~l~~aGf~~i~~~~~~~~---~~~~~~~ 183 (184)
..+++. +++++||+.++.....+. ..++.+.
T Consensus 193 ~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 193 FKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp HHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEEEE
T ss_pred hHHHHH-HHHHCCCEEEEEEccCCCccceEEEEEE
Confidence 346777 899999999988876543 5555554
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.77 E-value=8e-18 Score=117.73 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=102.3
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------C-CceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------P-GVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~-~i~~~~~d~~~~ 76 (184)
...+...+++.+. ..+..+|||+|||+|.++..+++.+|..+++++|+ +.+++.++++ + ++ ++.+|..+.
T Consensus 10 ~~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~ 87 (178)
T 3hm2_A 10 KQHVRALAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRA 87 (178)
T ss_dssp HHHHHHHHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGG
T ss_pred HHHHHHHHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhh
Confidence 3456777888887 78888999999999999999999998899999999 8888888753 3 67 888888663
Q ss_pred CC---C-CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccC
Q 030025 77 VP---N-GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERT 152 (184)
Q Consensus 77 ~~---~-~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
++ . .|+|++..++++ ..+++++.+.|+|||++++.+...+ +
T Consensus 88 ~~~~~~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~ 132 (178)
T 3hm2_A 88 FDDVPDNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVTVE-----------------------------S 132 (178)
T ss_dssp GGGCCSCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECSHH-----------------------------H
T ss_pred hhccCCCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeeccc-----------------------------c
Confidence 32 2 399999999987 2689999999999999998664221 2
Q ss_pred HHHHHHHHHHcCCceeEE
Q 030025 153 KHEFTTLATEAGFSGIRF 170 (184)
Q Consensus 153 ~~~~~~~l~~aGf~~i~~ 170 (184)
...+.+++++.|++..++
T Consensus 133 ~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 133 EQMLWALRKQFGGTISSF 150 (178)
T ss_dssp HHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHcCCeeEEE
Confidence 456677888888876654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-18 Score=121.84 Aligned_cols=130 Identities=14% Similarity=0.044 Sum_probs=105.6
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCCCC-CEEEechhhh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVPNG-DAILIKWILH 90 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~~~-D~i~~~~~l~ 90 (184)
..+..+|||+|||+|.++..+++. +..+++++|. +.+++.++++ .++++..+|+.+..+.. |+|++..+++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence 356789999999999999998764 5679999999 8898888764 34999999998744444 9999988887
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEE
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRF 170 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~ 170 (184)
++ ..+++++.++|+|||++++.+.... +.+++.++++++||+.++.
T Consensus 137 ~~-----~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~ 182 (205)
T 3grz_A 137 IL-----LDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLK 182 (205)
T ss_dssp HH-----HHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEE
T ss_pred HH-----HHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEe
Confidence 63 4789999999999999999664321 3678889999999999998
Q ss_pred EeecCceEEEEEe
Q 030025 171 VCFFHNLWVMEFY 183 (184)
Q Consensus 171 ~~~~~~~~~~~~~ 183 (184)
........++.-.
T Consensus 183 ~~~~~w~~~~~~~ 195 (205)
T 3grz_A 183 MRAGRWIGLAISR 195 (205)
T ss_dssp EEETTEEEEEEEE
T ss_pred eccCCEEEEEEec
Confidence 8877777776544
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-19 Score=130.03 Aligned_cols=148 Identities=14% Similarity=0.073 Sum_probs=101.0
Q ss_pred cccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-
Q 030025 3 NHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ- 75 (184)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~- 75 (184)
.+...+...+.+.+. .+.++|||||||+|..+..+++..+ .+++++|+ +.+++.|+++ .++.++.+|..+
T Consensus 44 ~we~~~m~~~a~~~~--~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ 120 (236)
T 3orh_A 44 RWETPYMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV 120 (236)
T ss_dssp GGGHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHhhc--cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhh
Confidence 344455566666654 6778999999999999999988765 48999999 9999988763 567888888764
Q ss_pred --cCCCC--CEEEe-----chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCC
Q 030025 76 --SVPNG--DAILI-----KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYP 146 (184)
Q Consensus 76 --~~~~~--D~i~~-----~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
+++.. |.|++ ...++|+.+. ..++++++|+|||||+|++.+......... .. ..
T Consensus 121 ~~~~~~~~FD~i~~D~~~~~~~~~~~~~~--~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~-------~~--------~~ 183 (236)
T 3orh_A 121 APTLPDGHFDGILYDTYPLSEETWHTHQF--NFIKNHAFRLLKPGGVLTYCNLTSWGELMK-------SK--------YS 183 (236)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGGTTTHHH--HHHHHTHHHHEEEEEEEEECCHHHHHHHTT-------TT--------CS
T ss_pred cccccccCCceEEEeeeecccchhhhcch--hhhhhhhhheeCCCCEEEEEecCCchhhhh-------hh--------hh
Confidence 34433 77753 5566666554 478999999999999998854321110000 00 00
Q ss_pred CccccCHHHHHHHHHHcCCceeEE
Q 030025 147 GGKERTKHEFTTLATEAGFSGIRF 170 (184)
Q Consensus 147 ~~~~~~~~~~~~~l~~aGf~~i~~ 170 (184)
.......+.+...|.++||+.+.+
T Consensus 184 ~~~~~~~~~~~~~L~eaGF~~~~i 207 (236)
T 3orh_A 184 DITIMFEETQVPALLEAGFRRENI 207 (236)
T ss_dssp CHHHHHHHHTHHHHHHHTCCGGGE
T ss_pred hhhhhhHHHHHHHHHHcCCeEEEE
Confidence 011123566777889999997654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-18 Score=123.70 Aligned_cols=107 Identities=15% Similarity=0.209 Sum_probs=88.4
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCCCC-CEE
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVPNG-DAI 83 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~~~-D~i 83 (184)
.+...++ ..+..+|||+|||+|.++..+++.. .+++++|+ +.+++.++++ ++++++.+|+.+ +.+.. |+|
T Consensus 42 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v 118 (216)
T 3ofk_A 42 LLRLSLS-SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLI 118 (216)
T ss_dssp HHHHHTT-TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEE
T ss_pred HHHHHcc-cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEE
Confidence 3444455 6677899999999999999999985 58999999 8888877653 579999999988 42333 999
Q ss_pred EechhhhcCChH-HHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 84 LIKWILHDWSDE-HCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 84 ~~~~~l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
++..++||++++ +...+++++.++|+|||++++.++.
T Consensus 119 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 119 VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp EEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 999999999864 4458899999999999999997754
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-18 Score=122.93 Aligned_cols=141 Identities=14% Similarity=0.083 Sum_probs=94.8
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCC-----CceEEEcccCccCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYP-----GVKHVGGDMFQSVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~-----~i~~~~~d~~~~~~ 78 (184)
+..++..+++.+....+..+|||+|||+|.++..+++..+..+++++|+ +.+++.++++. +++++.+|+.++++
T Consensus 14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 93 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLI 93 (215)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhh
Confidence 4556777888877237889999999999999999999998899999999 89999988751 58888999887433
Q ss_pred ------CC-CEEEechhhhc------CChHHH------------------HHHHHHHHhhCCCCcEEEEEeeecCCCCCC
Q 030025 79 ------NG-DAILIKWILHD------WSDEHC------------------LKLLKNCHKSIPEGGKVIVVESVLPELPEN 127 (184)
Q Consensus 79 ------~~-D~i~~~~~l~~------~~~~~~------------------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~ 127 (184)
.. |+|+++..+++ ++.... ..+++++.++|||||++++.+...
T Consensus 94 ~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------ 167 (215)
T 4dzr_A 94 ERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH------ 167 (215)
T ss_dssp HHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT------
T ss_pred hhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC------
Confidence 33 99999644433 222211 578999999999999955544211
Q ss_pred CccccchhhhhhHhhhhCCCccccCHHHHHHHHH--HcCCceeEEEeec
Q 030025 128 GTHSKINSLADVLVMTQYPGGKERTKHEFTTLAT--EAGFSGIRFVCFF 174 (184)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aGf~~i~~~~~~ 174 (184)
...+++.++++ ++||..+++....
T Consensus 168 -----------------------~~~~~~~~~l~~~~~gf~~~~~~~~~ 193 (215)
T 4dzr_A 168 -----------------------NQADEVARLFAPWRERGFRVRKVKDL 193 (215)
T ss_dssp -----------------------SCHHHHHHHTGGGGGGTEECCEEECT
T ss_pred -----------------------ccHHHHHHHHHHhhcCCceEEEEEec
Confidence 13577788889 9999988877654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-17 Score=121.06 Aligned_cols=147 Identities=14% Similarity=0.162 Sum_probs=111.1
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSV 77 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~ 77 (184)
+..++..+++.++ .+..+|||+|||+|..+..+++..|..+++++|+ +.+++.++++ ++++++.+|+.++.
T Consensus 95 te~l~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~ 172 (276)
T 2b3t_A 95 TECLVEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL 172 (276)
T ss_dssp HHHHHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG
T ss_pred HHHHHHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc
Confidence 3455666777664 4567999999999999999999999999999999 8899888764 47999999998854
Q ss_pred C-CC-CEEEech-------------hhhcCCh----------HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcccc
Q 030025 78 P-NG-DAILIKW-------------ILHDWSD----------EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK 132 (184)
Q Consensus 78 ~-~~-D~i~~~~-------------~l~~~~~----------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 132 (184)
+ .. |+|+++. +++|.+. .....+++++.+.|+|||++++...
T Consensus 173 ~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~------------- 239 (276)
T 2b3t_A 173 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG------------- 239 (276)
T ss_dssp TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-------------
T ss_pred ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-------------
Confidence 3 33 9999973 3333321 3446899999999999999998421
Q ss_pred chhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEee-cCceEEEEEe
Q 030025 133 INSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCF-FHNLWVMEFY 183 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~-~~~~~~~~~~ 183 (184)
..+.+++.++++++||+.+++..- .+...++.++
T Consensus 240 -----------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 240 -----------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 274 (276)
T ss_dssp -----------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred -----------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence 114678899999999998887764 3444444443
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=121.33 Aligned_cols=154 Identities=12% Similarity=0.043 Sum_probs=94.1
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeech-h-HhhhC---CCC------CCceEEEcccCc-cC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLP-H-VIQHS---PEY------PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~-~-~~~~a---~~~------~~i~~~~~d~~~-~~ 77 (184)
..+.+.+. .+..+|||||||+|.++..++++.+..+++|+|++ . |++.| +++ +++.++.+|+.+ +.
T Consensus 15 ~~~~~~~~--~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~ 92 (225)
T 3p2e_A 15 DELTEIIG--QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPF 92 (225)
T ss_dssp HHHHHHHT--TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCG
T ss_pred HHHHHHhC--CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhh
Confidence 44555543 56789999999999999999988889999999983 4 54444 543 579999999987 32
Q ss_pred CCCCEEEechhhhcCChH------HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCcccc
Q 030025 78 PNGDAILIKWILHDWSDE------HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKER 151 (184)
Q Consensus 78 ~~~D~i~~~~~l~~~~~~------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
...|.|.+..+...++.. +...+|++++++|||||++++........ ... . .... ... .......
T Consensus 93 ~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~~--~---~~~~--~~~-~~~~~~~ 163 (225)
T 3p2e_A 93 ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY-EEA--E---IKKR--GLP-LLSKAYF 163 (225)
T ss_dssp GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------------CCHHHH
T ss_pred hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc-hhc--h---hhhc--CCC-CCChhhc
Confidence 112444333332222110 01358999999999999999944322221 000 0 0000 000 0011111
Q ss_pred CHHHHHHHHHHcCCceeEEEeec
Q 030025 152 TKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 152 ~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
...++.++++++||++.+.....
T Consensus 164 ~~~el~~~l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 164 LSEQYKAELSNSGFRIDDVKELD 186 (225)
T ss_dssp HSHHHHHHHHHHTCEEEEEEEEC
T ss_pred chHHHHHHHHHcCCCeeeeeecC
Confidence 22359999999999988776553
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.8e-17 Score=115.07 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=101.0
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------C-CceEEEcccCccC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------P-GVKHVGGDMFQSV 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~-~i~~~~~d~~~~~ 77 (184)
..+...++..+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|+++ + +++++.+|+.+.+
T Consensus 41 ~~~~~~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 117 (204)
T 3njr_A 41 SPMRALTLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL 117 (204)
T ss_dssp HHHHHHHHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG
T ss_pred HHHHHHHHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc
Confidence 355667788887 888899999999999999999988 679999999 8999888764 4 7999999998732
Q ss_pred ---CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHH
Q 030025 78 ---PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKH 154 (184)
Q Consensus 78 ---~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
+..|+|++...+ +. . +++++.+.|+|||++++..... .+..
T Consensus 118 ~~~~~~D~v~~~~~~----~~--~-~l~~~~~~LkpgG~lv~~~~~~-----------------------------~~~~ 161 (204)
T 3njr_A 118 ADLPLPEAVFIGGGG----SQ--A-LYDRLWEWLAPGTRIVANAVTL-----------------------------ESET 161 (204)
T ss_dssp TTSCCCSEEEECSCC----CH--H-HHHHHHHHSCTTCEEEEEECSH-----------------------------HHHH
T ss_pred ccCCCCCEEEECCcc----cH--H-HHHHHHHhcCCCcEEEEEecCc-----------------------------ccHH
Confidence 234999987644 22 3 8999999999999999965321 1356
Q ss_pred HHHHHHHHcCCceeEEE
Q 030025 155 EFTTLATEAGFSGIRFV 171 (184)
Q Consensus 155 ~~~~~l~~aGf~~i~~~ 171 (184)
++.+++++.||+..++.
T Consensus 162 ~~~~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 162 LLTQLHARHGGQLLRID 178 (204)
T ss_dssp HHHHHHHHHCSEEEEEE
T ss_pred HHHHHHHhCCCcEEEEE
Confidence 77888999998877654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-18 Score=125.64 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=98.4
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc---
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ--- 75 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~--- 75 (184)
...+...+...+. .+..+|||||||+|.++..+++..+ .+++++|+ +.|++.|+++ .++.++.+|+.+
T Consensus 46 ~~~~~~~l~~~~~--~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~ 122 (236)
T 1zx0_A 46 ETPYMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAP 122 (236)
T ss_dssp GHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGG
T ss_pred HHHHHHHHHhhcC--CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhc
Confidence 3445555555543 5678999999999999999976543 48999999 8998888663 568999999876
Q ss_pred cCCCC--CEEEe-chh--hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccc
Q 030025 76 SVPNG--DAILI-KWI--LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKE 150 (184)
Q Consensus 76 ~~~~~--D~i~~-~~~--l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
++++. |+|++ .+. .+.+.......++++++++|||||++++.+....... ... .......
T Consensus 123 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~----------~~~-----~~~~~~~ 187 (236)
T 1zx0_A 123 TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGEL----------MKS-----KYSDITI 187 (236)
T ss_dssp GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHH----------TTT-----TCSCHHH
T ss_pred ccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHh----------hch-----hhhhhhh
Confidence 35443 99998 454 3333334445789999999999999998765321100 000 0001111
Q ss_pred cCHHHHHHHHHHcCCce
Q 030025 151 RTKHEFTTLATEAGFSG 167 (184)
Q Consensus 151 ~~~~~~~~~l~~aGf~~ 167 (184)
...+.+.+.++++||+.
T Consensus 188 ~~~~~~~~~l~~aGF~~ 204 (236)
T 1zx0_A 188 MFEETQVPALLEAGFRR 204 (236)
T ss_dssp HHHHHTHHHHHHTTCCG
T ss_pred hccHHHHHHHHHCCCCC
Confidence 23456667899999995
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=136.22 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=95.4
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCC------------CCCceEEEcc
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPE------------YPGVKHVGGD 72 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~------------~~~i~~~~~d 72 (184)
...+.+++.+. ..+..+|||||||+|.++..+++.. +..+++++|+ +.|++.|++ .++++++++|
T Consensus 708 qRle~LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGD 786 (950)
T 3htx_A 708 QRVEYALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGS 786 (950)
T ss_dssp HHHHHHHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESC
T ss_pred HHHHHHHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECc
Confidence 34566677776 5678999999999999999999987 5579999999 899988865 2579999999
Q ss_pred cCc-cCCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 73 MFQ-SVPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 73 ~~~-~~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+.+ +.+.. |+|++..++||++++....+++++.++|||| .+++..+..
T Consensus 787 a~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 787 ILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp TTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred hHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 988 55433 9999999999999988778999999999999 888877654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=128.52 Aligned_cols=117 Identities=13% Similarity=0.200 Sum_probs=95.5
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC---------------CCCce
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE---------------YPGVK 67 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------------~~~i~ 67 (184)
.....+..+++.+. +.+..+|||||||+|..+..++...+..+++|+|+ +.+++.|++ ..+++
T Consensus 157 t~~~~i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVe 235 (438)
T 3uwp_A 157 TSFDLVAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT 235 (438)
T ss_dssp THHHHHHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEE
T ss_pred CCHHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeE
Confidence 34556888999998 99999999999999999999998876657999999 777777653 25799
Q ss_pred EEEcccCc-cCC----CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 68 HVGGDMFQ-SVP----NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 68 ~~~~d~~~-~~~----~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
++++|+.+ +++ ..|+|+++.+++ . ++....|+++++.|||||+|++.+...+..
T Consensus 236 fi~GD~~~lp~~d~~~~aDVVf~Nn~~F--~-pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d 294 (438)
T 3uwp_A 236 LERGDFLSEEWRERIANTSVIFVNNFAF--G-PEVDHQLKERFANMKEGGRIVSSKPFAPLN 294 (438)
T ss_dssp EEECCTTSHHHHHHHHTCSEEEECCTTC--C-HHHHHHHHHHHTTSCTTCEEEESSCSSCTT
T ss_pred EEECcccCCccccccCCccEEEEccccc--C-chHHHHHHHHHHcCCCCcEEEEeecccCCC
Confidence 99999998 543 349999977753 2 344577899999999999999999887654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-17 Score=119.41 Aligned_cols=144 Identities=11% Similarity=0.116 Sum_probs=101.1
Q ss_pred HhHHHHHH---HhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCC----CCCCceEEEcccCcc-
Q 030025 7 LVLQKILE---AYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSP----EYPGVKHVGGDMFQS- 76 (184)
Q Consensus 7 ~~~~~l~~---~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~----~~~~i~~~~~d~~~~- 76 (184)
.++..++. .++ +++..+|||+|||+|.++..+++. .|..+++++|. +.|++.++ +.+|+..+.+|..++
T Consensus 61 klaa~i~~gl~~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~ 139 (233)
T 4df3_A 61 KLAAALLKGLIELP-VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPE 139 (233)
T ss_dssp HHHHHHHTTCSCCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGG
T ss_pred HHHHHHHhchhhcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCcc
Confidence 44555554 444 789999999999999999999998 58899999999 88876553 457899999998762
Q ss_pred ---CC-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCcccc
Q 030025 77 ---VP-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKER 151 (184)
Q Consensus 77 ---~~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
.. .. |+|++. +.+.. +...+++++++.|||||++++.......... .+...
T Consensus 140 ~~~~~~~~vDvVf~d--~~~~~--~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~------------------~p~~~-- 195 (233)
T 4df3_A 140 KYRHLVEGVDGLYAD--VAQPE--QAAIVVRNARFFLRDGGYMLMAIKARSIDVT------------------TEPSE-- 195 (233)
T ss_dssp GGTTTCCCEEEEEEC--CCCTT--HHHHHHHHHHHHEEEEEEEEEEEECCHHHHH------------------TCCCH--
T ss_pred ccccccceEEEEEEe--ccCCh--hHHHHHHHHHHhccCCCEEEEEEecccCCCC------------------CChHH--
Confidence 11 22 877753 33323 3347899999999999999997533211000 00001
Q ss_pred CHHHHHHHHHHcCCceeEEEeecC
Q 030025 152 TKHEFTTLATEAGFSGIRFVCFFH 175 (184)
Q Consensus 152 ~~~~~~~~l~~aGf~~i~~~~~~~ 175 (184)
..++..+.|+++||+.++.....+
T Consensus 196 ~~~~ev~~L~~~GF~l~e~i~L~p 219 (233)
T 4df3_A 196 VYKREIKTLMDGGLEIKDVVHLDP 219 (233)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTT
T ss_pred HHHHHHHHHHHCCCEEEEEEccCC
Confidence 123445678999999999887643
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.3e-18 Score=127.19 Aligned_cols=151 Identities=15% Similarity=0.108 Sum_probs=99.0
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----C--------CceEEEcccCc---------cCC
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----P--------GVKHVGGDMFQ---------SVP 78 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~--------~i~~~~~d~~~---------~~~ 78 (184)
+..+|||||||+|..+..++... ..+++|+|+ +.|++.|+++ . +++|.+.|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 46899999999998766665543 468999999 9999998864 1 25677888721 233
Q ss_pred C-C-CEEEechhhhcC-ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCC----------C--ccccchhhh-----h
Q 030025 79 N-G-DAILIKWILHDW-SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPEN----------G--THSKINSLA-----D 138 (184)
Q Consensus 79 ~-~-D~i~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~----------~--~~~~~~~~~-----~ 138 (184)
. . |+|+|..++|++ .+++...++++++++|||||++++..+........ + ......... .
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 3 3 999999999984 33344689999999999999999988743211000 0 000000000 0
Q ss_pred h--H-hhh-hCCCc-cccCHHHHHHHHHHcCCceeEEEe
Q 030025 139 V--L-VMT-QYPGG-KERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 139 ~--~-~~~-~~~~~-~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
+ + ... ..... ...+..++.++++++||+.++...
T Consensus 207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~ 245 (302)
T 2vdw_A 207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVD 245 (302)
T ss_dssp EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecC
Confidence 0 0 000 00001 245789999999999999988754
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=115.50 Aligned_cols=136 Identities=11% Similarity=0.084 Sum_probs=95.1
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhH----hhhCCCCCCceEEEcccCcc-----CCCC-CEEEech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHV----IQHSPEYPGVKHVGGDMFQS-----VPNG-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~----~~~a~~~~~i~~~~~d~~~~-----~~~~-D~i~~~~ 87 (184)
+++..+|||+|||+|.++..+++..+..+++++|+ +.| .+.+++.+++.++.+|+.++ ++.. |+|++..
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 134 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 134 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec
Confidence 56788999999999999999999887779999999 654 45555557899999998762 2333 9999873
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHH----HHHHHHc
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEF----TTLATEA 163 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~a 163 (184)
.+ +.+...++++++++|||||++++.....+.. . ..+.+++ .+.++++
T Consensus 135 -~~---~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~--------------------~----~~~~~~~~~~~~~~l~~~ 186 (210)
T 1nt2_A 135 -AQ---KNQIEILKANAEFFLKEKGEVVIMVKARSID--------------------S----TAEPEEVFKSVLKEMEGD 186 (210)
T ss_dssp -CS---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHC--------------------T----TSCHHHHHHHHHHHHHTT
T ss_pred -cC---hhHHHHHHHHHHHHhCCCCEEEEEEecCCcc--------------------c----cCCHHHHHHHHHHHHHhh
Confidence 22 1233356999999999999999974321100 0 0123332 1337888
Q ss_pred CCceeEEEeec---CceEEEEEe
Q 030025 164 GFSGIRFVCFF---HNLWVMEFY 183 (184)
Q Consensus 164 Gf~~i~~~~~~---~~~~~~~~~ 183 (184)
|+.++..... ....++.+.
T Consensus 187 -f~~~~~~~~~p~~~~h~~~~~~ 208 (210)
T 1nt2_A 187 -FKIVKHGSLMPYHRDHIFIHAY 208 (210)
T ss_dssp -SEEEEEEECTTTCTTEEEEEEE
T ss_pred -cEEeeeecCCCCCCCcEEEEEE
Confidence 9999988773 345555554
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=122.41 Aligned_cols=109 Identities=11% Similarity=0.080 Sum_probs=86.9
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-c------CC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-S------VP 78 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~------~~ 78 (184)
..+..+++.++ ..+..+|||||||+|.++..++++ ..+++++|. +.|++.++++..-.++..++.+ + .+
T Consensus 32 ~~~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~ 108 (261)
T 3iv6_A 32 SDRENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELA 108 (261)
T ss_dssp CHHHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGT
T ss_pred HHHHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccC
Confidence 45677888888 888999999999999999999987 468999999 8999988765211123333332 1 12
Q ss_pred CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 79 NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 79 ~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.. |+|++..++||+..++...+++++.++| |||+++++..
T Consensus 109 ~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 109 GHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp TCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred CCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 23 9999999999998888788999999999 9999999754
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=115.86 Aligned_cols=157 Identities=11% Similarity=0.106 Sum_probs=104.8
Q ss_pred cccHHhHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHh----hhCCCCCCceEEEcccC
Q 030025 3 NHTTLVLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVI----QHSPEYPGVKHVGGDMF 74 (184)
Q Consensus 3 ~~~~~~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~----~~a~~~~~i~~~~~d~~ 74 (184)
.+.+.+...++..+.. +.+..+|||+|||+|.++..+++. .+..+++++|. +.|+ +.++++.|+.++.+|+.
T Consensus 56 ~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~ 135 (232)
T 3id6_C 56 AFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADAR 135 (232)
T ss_dssp TTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTT
T ss_pred hHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccc
Confidence 3455667777776542 678899999999999999999987 46789999999 7663 44555689999999997
Q ss_pred ccC-----CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCc
Q 030025 75 QSV-----PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGG 148 (184)
Q Consensus 75 ~~~-----~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
.+. ... |+|++..+. ++ ....+.+.+.+.|||||+|++............ ..
T Consensus 136 ~~~~~~~~~~~~D~I~~d~a~---~~-~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~------------------~~ 193 (232)
T 3id6_C 136 FPQSYKSVVENVDVLYVDIAQ---PD-QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKD------------------PK 193 (232)
T ss_dssp CGGGTTTTCCCEEEEEECCCC---TT-HHHHHHHHHHHHEEEEEEEEEEEC-------CC------------------SS
T ss_pred cchhhhccccceEEEEecCCC---hh-HHHHHHHHHHHhCCCCeEEEEEEccCCcccCCC------------------HH
Confidence 621 223 999987553 22 222345666779999999999742211000000 00
Q ss_pred cccCHHHHHHHHHHcCCceeEEEeecC---ceEEEEEe
Q 030025 149 KERTKHEFTTLATEAGFSGIRFVCFFH---NLWVMEFY 183 (184)
Q Consensus 149 ~~~~~~~~~~~l~~aGf~~i~~~~~~~---~~~~~~~~ 183 (184)
...++..+.|+++||+.++.....+ .+.++.+.
T Consensus 194 --e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 194 --EIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp --SSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEE
T ss_pred --HHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEE
Confidence 0123455677889999999888743 35555443
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-17 Score=124.75 Aligned_cols=112 Identities=15% Similarity=0.163 Sum_probs=87.6
Q ss_pred hHHHHHHHhcC-CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------------CCceEEEcc
Q 030025 8 VLQKILEAYKG-FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------------PGVKHVGGD 72 (184)
Q Consensus 8 ~~~~l~~~~~~-~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------------~~i~~~~~d 72 (184)
+.+.+++.+.. .++..+|||+|||+|..+..+++. +..+++++|+ +.|++.++++ .++.++++|
T Consensus 20 l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D 98 (313)
T 3bgv_A 20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD 98 (313)
T ss_dssp HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECC
T ss_pred HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEec
Confidence 44455555441 236789999999999999998874 5679999999 8898887653 268999999
Q ss_pred cCc-c----CC--C-C-CEEEechhhhcC-C-hHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 73 MFQ-S----VP--N-G-DAILIKWILHDW-S-DEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 73 ~~~-~----~~--~-~-D~i~~~~~l~~~-~-~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+.+ + ++ . . |+|++..++|++ . .++...++++++++|+|||.+++..+.
T Consensus 99 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 99 SSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp TTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 987 4 32 2 3 999999999997 3 345568999999999999999998764
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.6e-17 Score=113.34 Aligned_cols=110 Identities=11% Similarity=0.113 Sum_probs=81.6
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc--cC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ--SV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~--~~ 77 (184)
.+...++... +++..+|||+|||+|..+..++++ ..+++++|+ +.|++.|+++ ++++++..|... .+
T Consensus 10 ~~~~~~l~~~--~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~ 85 (185)
T 3mti_A 10 HMSHDFLAEV--LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHY 85 (185)
T ss_dssp HHHHHHHHTT--CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGT
T ss_pred HHHHHHHHHh--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhh
Confidence 3445555542 567899999999999999999988 689999999 9999988764 678999877765 23
Q ss_pred -CCC-CEEEechhhhcC-------ChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 78 -PNG-DAILIKWILHDW-------SDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 78 -~~~-D~i~~~~~l~~~-------~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+.. |+|++.....+. ..+....+++++.+.|||||++++....
T Consensus 86 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 86 VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 333 999876322221 2244567899999999999999997643
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=114.96 Aligned_cols=98 Identities=18% Similarity=0.283 Sum_probs=79.0
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c--CCCC--CEEEechh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S--VPNG--DAILIKWI 88 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~--~~~~--D~i~~~~~ 88 (184)
+..+|||||||+|.++..+++.+|..+++++|+ +.+++.|+++ +++.++.+|+.+ + ++.. |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 467999999999999999999999999999999 8898888663 589999999987 3 4433 99998865
Q ss_pred hhcCChH------HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 89 LHDWSDE------HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 89 l~~~~~~------~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
..+.... ....+++++.++|+|||.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 4332210 11368999999999999999854
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.7e-17 Score=113.19 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=102.1
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ 75 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~ 75 (184)
....+...+++.+. ..+..+|||+|||+|..+..+++.. .+++++|. +.+++.++++ +++.+..+|+.+
T Consensus 17 ~~~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 93 (192)
T 1l3i_A 17 TAMEVRCLIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE 93 (192)
T ss_dssp CCHHHHHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred ChHHHHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH
Confidence 35567777888887 8888999999999999999999886 79999999 8888887653 578999999876
Q ss_pred cCC--CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccC
Q 030025 76 SVP--NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERT 152 (184)
Q Consensus 76 ~~~--~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
.++ .. |+|++..+++++ ..+++++.++|+|||.+++..... .+
T Consensus 94 ~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~~~-----------------------------~~ 139 (192)
T 1l3i_A 94 ALCKIPDIDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAILL-----------------------------ET 139 (192)
T ss_dssp HHTTSCCEEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEECBH-----------------------------HH
T ss_pred hcccCCCCCEEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEecCc-----------------------------ch
Confidence 333 23 999998887653 478999999999999999965321 13
Q ss_pred HHHHHHHHHHcCCce
Q 030025 153 KHEFTTLATEAGFSG 167 (184)
Q Consensus 153 ~~~~~~~l~~aGf~~ 167 (184)
..++.+.+++.||..
T Consensus 140 ~~~~~~~l~~~g~~~ 154 (192)
T 1l3i_A 140 KFEAMECLRDLGFDV 154 (192)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHCCCce
Confidence 567788999999943
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=114.83 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=95.4
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc--cCCC-C-CEEEech
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ--SVPN-G-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~--~~~~-~-D~i~~~~ 87 (184)
+++..+|||+||| +|.++..+++.. ..+++++|+ +.+++.++++ .+++++.+|+.. +++. . |+|+++.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 5678999999999 999999999986 679999999 8999888764 369999999643 4443 3 9999987
Q ss_pred hhhcCChHH-----------------HHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccc
Q 030025 88 ILHDWSDEH-----------------CLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKE 150 (184)
Q Consensus 88 ~l~~~~~~~-----------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
.+++.++.+ ...+++++.++|+|||++++..+.. .
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------------~ 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK----------------------------E 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC----------------------------H
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc----------------------------H
Confidence 766543311 2578999999999999999954221 0
Q ss_pred cCHHHHHHHHHHcCCceeEEEee
Q 030025 151 RTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 151 ~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
...+++.++++++||+...+...
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~ 206 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKFK 206 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEC
T ss_pred hHHHHHHHHHHHcCCceEEEEec
Confidence 13578889999999987666544
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.2e-16 Score=112.05 Aligned_cols=152 Identities=15% Similarity=0.135 Sum_probs=102.8
Q ss_pred HhHHHH---HHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhh----CCCCCCceEEEcccCcc-
Q 030025 7 LVLQKI---LEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQH----SPEYPGVKHVGGDMFQS- 76 (184)
Q Consensus 7 ~~~~~l---~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~----a~~~~~i~~~~~d~~~~- 76 (184)
.+...+ ++.++ +.+..+|||+|||+|.++..+++.. +..+++++|. +.+++. +++.+++.++.+|+.+.
T Consensus 57 ~~~~~i~~~l~~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 135 (227)
T 1g8a_A 57 KLGAAIMNGLKNFP-IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPE 135 (227)
T ss_dssp HHHHHHHTTCCCCC-CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGG
T ss_pred hHHHHHHhhHHhcC-CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcc
Confidence 344555 33444 6678899999999999999999884 5679999999 755544 44457899999999862
Q ss_pred ----CCCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCcccc
Q 030025 77 ----VPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKER 151 (184)
Q Consensus 77 ----~~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
.+.. |+|++... .......+++++.++|||||++++. .......... .....
T Consensus 136 ~~~~~~~~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~------------------~~~~~ 192 (227)
T 1g8a_A 136 EYRALVPKVDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTK------------------EPEQV 192 (227)
T ss_dssp GGTTTCCCEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTS------------------CHHHH
T ss_pred hhhcccCCceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCC------------------Chhhh
Confidence 2333 99997554 2223335699999999999999997 2221110000 01122
Q ss_pred CHHHHHHHHHHcCCceeEEEeecCc---eEEEEEeC
Q 030025 152 TKHEFTTLATEAGFSGIRFVCFFHN---LWVMEFYK 184 (184)
Q Consensus 152 ~~~~~~~~l~~aGf~~i~~~~~~~~---~~~~~~~~ 184 (184)
+.+++.++ +++ |+.++.....+. ..++.+.|
T Consensus 193 ~~~~l~~l-~~~-f~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 193 FREVEREL-SEY-FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp HHHHHHHH-HTT-SEEEEEEECTTTSSSEEEEEEEC
T ss_pred hHHHHHHH-Hhh-ceeeeEeccCcccCCCEEEEEEe
Confidence 46777777 777 999988876544 55555543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-17 Score=119.45 Aligned_cols=125 Identities=9% Similarity=0.093 Sum_probs=96.2
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc--cCC-C-C
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ--SVP-N-G 80 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~--~~~-~-~ 80 (184)
.+...++..+. ++..+|||+|||+|.++..+++. ..+++++|+ +.+++.++++ ++++++++|+.+ +++ . .
T Consensus 36 ~l~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~ 111 (226)
T 3m33_A 36 LTFDLWLSRLL--TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAP 111 (226)
T ss_dssp HHHHHHHHHHC--CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCC
T ss_pred HHHHHHHHhcC--CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCC
Confidence 44555555543 56789999999999999999998 569999999 8999888764 789999999965 444 3 3
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+|++.. +. ..+++++.++|||||+++. . +...+..++.++
T Consensus 112 fD~v~~~~------~~--~~~l~~~~~~LkpgG~l~~--~----------------------------~~~~~~~~~~~~ 153 (226)
T 3m33_A 112 FGLIVSRR------GP--TSVILRLPELAAPDAHFLY--V----------------------------GPRLNVPEVPER 153 (226)
T ss_dssp EEEEEEES------CC--SGGGGGHHHHEEEEEEEEE--E----------------------------ESSSCCTHHHHH
T ss_pred EEEEEeCC------CH--HHHHHHHHHHcCCCcEEEE--e----------------------------CCcCCHHHHHHH
Confidence 9999871 11 2679999999999999991 0 011245678899
Q ss_pred HHHcCCceeEEEee
Q 030025 160 ATEAGFSGIRFVCF 173 (184)
Q Consensus 160 l~~aGf~~i~~~~~ 173 (184)
++++||+.+++...
T Consensus 154 l~~~Gf~~~~~~~~ 167 (226)
T 3m33_A 154 LAAVGWDIVAEDHV 167 (226)
T ss_dssp HHHTTCEEEEEEEE
T ss_pred HHHCCCeEEEEEee
Confidence 99999998876543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=116.91 Aligned_cols=129 Identities=12% Similarity=0.159 Sum_probs=103.6
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~ 78 (184)
....++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.|+++ +++++..+|+.+.++
T Consensus 81 ~~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 159 (255)
T 3mb5_A 81 DAALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE 159 (255)
T ss_dssp HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC
T ss_pred HHHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC
Confidence 4556777777 888999999999999999999999 78899999999 8899888764 349999999988655
Q ss_pred CC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHH
Q 030025 79 NG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEF 156 (184)
Q Consensus 79 ~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
.. |+|++ +.+++ ..+++++.+.|+|||++++..+.. ....++
T Consensus 160 ~~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~-----------------------------~~~~~~ 203 (255)
T 3mb5_A 160 EENVDHVIL-----DLPQP--ERVVEHAAKALKPGGFFVAYTPCS-----------------------------NQVMRL 203 (255)
T ss_dssp CCSEEEEEE-----CSSCG--GGGHHHHHHHEEEEEEEEEEESSH-----------------------------HHHHHH
T ss_pred CCCcCEEEE-----CCCCH--HHHHHHHHHHcCCCCEEEEEECCH-----------------------------HHHHHH
Confidence 43 99988 33433 368999999999999999965321 024667
Q ss_pred HHHHHHcC--CceeEEEee
Q 030025 157 TTLATEAG--FSGIRFVCF 173 (184)
Q Consensus 157 ~~~l~~aG--f~~i~~~~~ 173 (184)
.+.+++.| |..+++...
T Consensus 204 ~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 204 HEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHHTGGGBSCCEEECC
T ss_pred HHHHHHcCCCccccEEEEE
Confidence 78899999 998887654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=115.94 Aligned_cols=125 Identities=14% Similarity=0.184 Sum_probs=98.6
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CC--ceEEEcccCccCCC--CCEEEechhhh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PG--VKHVGGDMFQSVPN--GDAILIKWILH 90 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~--i~~~~~d~~~~~~~--~D~i~~~~~l~ 90 (184)
+.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.++++ ++ +++..+|+.+.++. .|+|+++...+
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 35678999999999999999888754 9999999 8898888764 22 88999998774432 39999876555
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEE
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRF 170 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~ 170 (184)
+ ...+++++.+.|+|||++++.+.... +.+++.+.++++||+.++.
T Consensus 196 ~-----~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------~~~~v~~~l~~~Gf~~~~~ 241 (254)
T 2nxc_A 196 L-----HAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp H-----HHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEE
T ss_pred H-----HHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------CHHHHHHHHHHCCCEEEEE
Confidence 3 34789999999999999999765321 3678899999999999988
Q ss_pred EeecCceEE
Q 030025 171 VCFFHNLWV 179 (184)
Q Consensus 171 ~~~~~~~~~ 179 (184)
........+
T Consensus 242 ~~~~~W~~l 250 (254)
T 2nxc_A 242 AAEGEWVLL 250 (254)
T ss_dssp EEETTEEEE
T ss_pred eccCCeEEE
Confidence 776554443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-16 Score=116.61 Aligned_cols=99 Identities=15% Similarity=0.197 Sum_probs=81.2
Q ss_pred HHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCCCCEEEe
Q 030025 14 EAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPNGDAILI 85 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~~D~i~~ 85 (184)
..+. ++++.+|||||||+|.++..++.+.++++++++|+ +.|++.|+++ ++++++++|+.+ +....|+|++
T Consensus 116 ~la~-l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~ 194 (298)
T 3fpf_A 116 ALGR-FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMV 194 (298)
T ss_dssp HHTT-CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEE
T ss_pred HHcC-CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEE
Confidence 3445 88999999999999988876666677899999999 9999999874 689999999987 4222399998
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
... .++. .++++++.+.|||||+|++.+
T Consensus 195 ~a~---~~d~--~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 195 AAL---AEPK--RRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp CTT---CSCH--HHHHHHHHHHCCTTCEEEEEE
T ss_pred CCC---ccCH--HHHHHHHHHHcCCCcEEEEEc
Confidence 655 2333 479999999999999999976
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=114.54 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=77.5
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c--CCCC--CEEEechh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S--VPNG--DAILIKWI 88 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~--~~~~--D~i~~~~~ 88 (184)
+..+|||||||+|.++..+++.+|..+++++|+ +.+++.|+++ +++.++.+|+.+ + ++.. |.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 467899999999999999999999999999999 8898887653 579999999987 3 4443 99887654
Q ss_pred hhcCChH------HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 89 LHDWSDE------HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 89 l~~~~~~------~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
..+.... ....+++++.+.|+|||.+++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 3222110 01368999999999999999864
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=114.62 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=84.6
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCCCC--CEEEechhhh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVPNG--DAILIKWILH 90 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~~~--D~i~~~~~l~ 90 (184)
+.+..+|||+|||+|.++..+++..+. +++++|+ +.+++.++++ +++.+..+|+.+ +++.. |+|++..+++
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 357789999999999999999998644 8999999 8888877653 689999999987 55543 9999999998
Q ss_pred cCC-------------hHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 91 DWS-------------DEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 91 ~~~-------------~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
++. .++...+++++.++|+|||++++.++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 765 345568999999999999999998754
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=116.33 Aligned_cols=121 Identities=13% Similarity=0.134 Sum_probs=93.9
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cC----CCC-CEEEe
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SV----PNG-DAILI 85 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~----~~~-D~i~~ 85 (184)
+++..+|||||||+|..+..++...+..+++++|. +.+++.+++. ++++++.+|+.+ +. ... |+|++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 35678999999999999999998888899999999 8888888663 479999999977 43 233 99998
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCC
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGF 165 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 165 (184)
..+ .+. ..+++.+.++|+|||++++...... . ....++.+.++++||
T Consensus 148 ~~~----~~~--~~~l~~~~~~LkpgG~l~~~~g~~~-------------~--------------~~~~~~~~~l~~~g~ 194 (240)
T 1xdz_A 148 RAV----ARL--SVLSELCLPLVKKNGLFVALKAASA-------------E--------------EELNAGKKAITTLGG 194 (240)
T ss_dssp ECC----SCH--HHHHHHHGGGEEEEEEEEEEECC-C-------------H--------------HHHHHHHHHHHHTTE
T ss_pred ecc----CCH--HHHHHHHHHhcCCCCEEEEEeCCCc-------------h--------------HHHHHHHHHHHHcCC
Confidence 763 332 4789999999999999998531100 0 023567788999999
Q ss_pred ceeEEEe
Q 030025 166 SGIRFVC 172 (184)
Q Consensus 166 ~~i~~~~ 172 (184)
+.++...
T Consensus 195 ~~~~~~~ 201 (240)
T 1xdz_A 195 ELENIHS 201 (240)
T ss_dssp EEEEEEE
T ss_pred eEeEEEE
Confidence 9887654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=115.21 Aligned_cols=143 Identities=10% Similarity=0.049 Sum_probs=97.4
Q ss_pred HhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhH----hhhCCCCCCceEEEcccCcc--C---CCC-CE
Q 030025 15 AYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHV----IQHSPEYPGVKHVGGDMFQS--V---PNG-DA 82 (184)
Q Consensus 15 ~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~----~~~a~~~~~i~~~~~d~~~~--~---~~~-D~ 82 (184)
.+. +.+..+|||+|||+|.++..+++.+ +..+++++|+ +.+ ++.+++++++.++.+|+.+. + ... |+
T Consensus 72 ~~~-~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~ 150 (233)
T 2ipx_A 72 QIH-IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDV 150 (233)
T ss_dssp CCC-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEE
T ss_pred eec-CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEE
Confidence 444 6778899999999999999999986 6789999998 654 44555558899999999872 2 223 99
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHH
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATE 162 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (184)
|++... ..+....+++++.+.|||||++++.-........ . ........+ .++|++
T Consensus 151 V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~-~------------------~~~~~~~~~-~~~l~~ 206 (233)
T 2ipx_A 151 IFADVA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDST-A------------------SAEAVFASE-VKKMQQ 206 (233)
T ss_dssp EEECCC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSS-S------------------CHHHHHHHH-HHTTGG
T ss_pred EEEcCC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccC-C------------------CHHHHHHHH-HHHHHH
Confidence 998544 2223346789999999999999994322100000 0 000001223 588999
Q ss_pred cCCceeEEEeecCc---eEEEEE
Q 030025 163 AGFSGIRFVCFFHN---LWVMEF 182 (184)
Q Consensus 163 aGf~~i~~~~~~~~---~~~~~~ 182 (184)
+||+.++.....+. ..++.+
T Consensus 207 ~Gf~~~~~~~~~~~~~~~~~v~~ 229 (233)
T 2ipx_A 207 ENMKPQEQLTLEPYERDHAVVVG 229 (233)
T ss_dssp GTEEEEEEEECTTTSSSEEEEEE
T ss_pred CCCceEEEEecCCccCCcEEEEE
Confidence 99999987765432 444444
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-17 Score=121.35 Aligned_cols=125 Identities=12% Similarity=0.113 Sum_probs=96.4
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCCC-
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPNG- 80 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~~- 80 (184)
.++..+. +.+..+|||+|||+|..+..+++. .|..+++++|. +.+++.++++ ++++++.+|+.++++..
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 5666666 788899999999999999999998 77889999999 8888877543 47999999998855543
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+|++ ++++++ .+++++.+.|+|||++++.++.. ...+++.+.
T Consensus 180 fD~Vi~-----~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~-----------------------------~~~~~~~~~ 223 (275)
T 1yb2_A 180 YDAVIA-----DIPDPW--NHVQKIASMMKPGSVATFYLPNF-----------------------------DQSEKTVLS 223 (275)
T ss_dssp EEEEEE-----CCSCGG--GSHHHHHHTEEEEEEEEEEESSH-----------------------------HHHHHHHHH
T ss_pred ccEEEE-----cCcCHH--HHHHHHHHHcCCCCEEEEEeCCH-----------------------------HHHHHHHHH
Confidence 99998 445443 78999999999999999976321 024566778
Q ss_pred HHHcCCceeEEEe
Q 030025 160 ATEAGFSGIRFVC 172 (184)
Q Consensus 160 l~~aGf~~i~~~~ 172 (184)
++++||+.++...
T Consensus 224 l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 224 LSASGMHHLETVE 236 (275)
T ss_dssp SGGGTEEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 8889999887765
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-17 Score=117.17 Aligned_cols=98 Identities=10% Similarity=0.178 Sum_probs=78.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc----CCCC--CEEEech
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS----VPNG--DAILIKW 87 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~----~~~~--D~i~~~~ 87 (184)
+..+|||||||+|.++..+++.+|+..++|+|+ +.+++.|+++ .++.++.+|+.+. ++.. |.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 467999999999999999999999999999999 8888877653 5799999998762 4443 9998875
Q ss_pred hhhcCChHHH------HHHHHHHHhhCCCCcEEEEEe
Q 030025 88 ILHDWSDEHC------LKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 88 ~l~~~~~~~~------~~~l~~~~~~L~pgG~l~i~~ 118 (184)
...+...... ..+++++.++|||||.+++..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 4433222111 148999999999999999965
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.7e-16 Score=108.11 Aligned_cols=127 Identities=12% Similarity=0.091 Sum_probs=101.0
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS 76 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~ 76 (184)
....+...+++.+. ..+..+|||+|||+|.++..+++ +..+++++|. +.+++.++++ ++++++.+|+.++
T Consensus 19 ~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~ 95 (183)
T 2yxd_A 19 TKEEIRAVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV 95 (183)
T ss_dssp CCHHHHHHHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH
T ss_pred CHHHHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc
Confidence 34567788888887 78889999999999999999998 6789999999 8898888764 5799999999875
Q ss_pred CCC--CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHH
Q 030025 77 VPN--GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKH 154 (184)
Q Consensus 77 ~~~--~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
++. .|+|++..+ + + ...+++++.+. |||.+++.+... .+..
T Consensus 96 ~~~~~~D~i~~~~~-~---~--~~~~l~~~~~~--~gG~l~~~~~~~-----------------------------~~~~ 138 (183)
T 2yxd_A 96 LDKLEFNKAFIGGT-K---N--IEKIIEILDKK--KINHIVANTIVL-----------------------------ENAA 138 (183)
T ss_dssp GGGCCCSEEEECSC-S---C--HHHHHHHHHHT--TCCEEEEEESCH-----------------------------HHHH
T ss_pred ccCCCCcEEEECCc-c---c--HHHHHHHHhhC--CCCEEEEEeccc-----------------------------ccHH
Confidence 443 399999888 2 2 23789999998 999999966321 1246
Q ss_pred HHHHHHHHcCCceeEE
Q 030025 155 EFTTLATEAGFSGIRF 170 (184)
Q Consensus 155 ~~~~~l~~aGf~~i~~ 170 (184)
++.+.+++.||....+
T Consensus 139 ~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 139 KIINEFESRGYNVDAV 154 (183)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCeEEEE
Confidence 6788999999876544
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=112.78 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=81.4
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c-CC-CC-CEEEe
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S-VP-NG-DAILI 85 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~-~~-~~-D~i~~ 85 (184)
+++..+|||+|||+|..+..+++++ +..+++++|+ +.+++.++++ ++++++.+|+.+ + .. .. |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 5778899999999999999999985 6679999999 8899888764 579999999876 2 32 33 99998
Q ss_pred chhhhc-------CChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 86 KWILHD-------WSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 86 ~~~l~~-------~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
...+.. ...++...+++++.++|+|||++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 765511 12234457999999999999999997744
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-16 Score=114.72 Aligned_cols=129 Identities=11% Similarity=0.136 Sum_probs=101.7
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~ 77 (184)
....++..+. +.+..+|||+|||+|.++..+++. .|..+++++|. +.+++.++++ +++.+..+|+.+ ++
T Consensus 84 ~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~ 162 (258)
T 2pwy_A 84 DASAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAEL 162 (258)
T ss_dssp HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCC
T ss_pred HHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCC
Confidence 3456777777 888999999999999999999998 67889999999 8888877653 579999999987 46
Q ss_pred CCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 78 PNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 78 ~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+.. |+|++ +++++. .+++++.++|+|||++++.++..+ ...+
T Consensus 163 ~~~~~D~v~~-----~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~ 206 (258)
T 2pwy_A 163 EEAAYDGVAL-----DLMEPW--KVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLE 206 (258)
T ss_dssp CTTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHH
T ss_pred CCCCcCEEEE-----CCcCHH--HHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHH
Confidence 543 99998 334432 689999999999999999763210 1356
Q ss_pred HHHHHHHcCCceeEEEee
Q 030025 156 FTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 156 ~~~~l~~aGf~~i~~~~~ 173 (184)
+.+.++++||..++....
T Consensus 207 ~~~~l~~~gf~~~~~~~~ 224 (258)
T 2pwy_A 207 LVRAAEAHPFRLERVLEV 224 (258)
T ss_dssp HHHHHTTTTEEEEEEEEE
T ss_pred HHHHHHHCCCceEEEEEe
Confidence 667788899998876653
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-16 Score=118.70 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=80.3
Q ss_pred CCCeEEEecCCcCh----HHHHHHhhCC----CCeEEEeec-hhHhhhCCCC----------------------------
Q 030025 21 HIKQLVDVGGSLGN----TLKAITSKYP----HIKGINFDL-PHVIQHSPEY---------------------------- 63 (184)
Q Consensus 21 ~~~~ilDiG~G~G~----~~~~l~~~~~----~~~~~~~D~-~~~~~~a~~~---------------------------- 63 (184)
+..+|+|+|||||. ++..+++..+ ..+++++|+ +.|++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 5555666544 469999999 9999887642
Q ss_pred ---------CCceEEEcccCc-cCC--CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 64 ---------PGVKHVGGDMFQ-SVP--NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 64 ---------~~i~~~~~d~~~-~~~--~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
.++.|.+.|+.+ +++ .. |+|+|.++++|++++...++++++++.|+|||+|++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 258899999988 554 33 9999999999999887789999999999999999983
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.1e-16 Score=109.19 Aligned_cols=106 Identities=10% Similarity=0.034 Sum_probs=83.0
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CC--ceEEEcccCc-cCCCC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PG--VKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~--i~~~~~d~~~-~~~~~ 80 (184)
+.+.+...+ +++.+|||+|||+|.++..++...|.++++++|+ +.|++.++++ .+ .++...|... ..+..
T Consensus 39 fY~~~~~~l---~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~ 115 (200)
T 3fzg_A 39 FYTYVFGNI---KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGT 115 (200)
T ss_dssp HHHHHHHHS---CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSE
T ss_pred HHHHHHhhc---CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCC
Confidence 344444444 4688999999999999999999999999999999 9999998875 12 2344467665 33333
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
|+|++..++|++ ++. ...+.++.+.|+|||.+|-.+
T Consensus 116 ~DvVLa~k~LHlL-~~~-~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 116 YDVVFLLKMLPVL-KQQ-DVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp EEEEEEETCHHHH-HHT-TCCHHHHHHTCEEEEEEEEEE
T ss_pred cChhhHhhHHHhh-hhh-HHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999 333 356669999999999988866
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.6e-16 Score=116.15 Aligned_cols=151 Identities=15% Similarity=0.148 Sum_probs=99.2
Q ss_pred hHHHHHHHhcCCC-CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhh-CCCCCCceEE-EcccCc----cCCC
Q 030025 8 VLQKILEAYKGFE-HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQH-SPEYPGVKHV-GGDMFQ----SVPN 79 (184)
Q Consensus 8 ~~~~l~~~~~~~~-~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~-a~~~~~i~~~-~~d~~~----~~~~ 79 (184)
-...+++.+. +. +..+|||||||||.++..+++. +..+++++|+ +.|++. +++.+++... ..++.. .++.
T Consensus 72 Kl~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~ 149 (291)
T 3hp7_A 72 KLEKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTE 149 (291)
T ss_dssp HHHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTT
T ss_pred HHHHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCC
Confidence 3456677776 54 5679999999999999988886 4469999999 889877 3444554332 233322 1232
Q ss_pred --CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe-eecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHH
Q 030025 80 --GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE-SVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEF 156 (184)
Q Consensus 80 --~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
.|+|++..+++++ ..+|.+++++|+|||.+++.- +.++.... .... .... ..+..+.+..+++
T Consensus 150 ~~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~-----~~~~-~G~v---rd~~~~~~~~~~v 215 (291)
T 3hp7_A 150 GLPSFASIDVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGRE-----QIGK-NGIV---RESSIHEKVLETV 215 (291)
T ss_dssp CCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCGG-----GCC--CCCC---CCHHHHHHHHHHH
T ss_pred CCCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccChh-----hcCC-CCcc---CCHHHHHHHHHHH
Confidence 3999998888865 268999999999999999852 11211100 0000 0000 0001123478999
Q ss_pred HHHHHHcCCceeEEEeec
Q 030025 157 TTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~~~~ 174 (184)
.++++++||....+...+
T Consensus 216 ~~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 216 TAFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHHHTTEEEEEEEECS
T ss_pred HHHHHHCCCEEEEEEECC
Confidence 999999999988877653
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-16 Score=121.95 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=89.5
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---------CCceEEEcccCccC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---------PGVKHVGGDMFQSV 77 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---------~~i~~~~~d~~~~~ 77 (184)
..+.+++.++ ..+..+|||+|||+|.++..+++.+|..+++++|. +.+++.++++ .++++..+|+.+++
T Consensus 210 ~~~~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~ 288 (375)
T 4dcm_A 210 GARFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV 288 (375)
T ss_dssp HHHHHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC
T ss_pred HHHHHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC
Confidence 3456788887 66668999999999999999999999999999999 8899888764 14788999999865
Q ss_pred CC-C-CEEEechhhhc---CChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 78 PN-G-DAILIKWILHD---WSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 78 ~~-~-D~i~~~~~l~~---~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+. . |+|+++..+|+ +.+.....+++++.+.|+|||++++..
T Consensus 289 ~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 289 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 54 3 99999988886 334444578999999999999999965
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=115.65 Aligned_cols=140 Identities=14% Similarity=0.178 Sum_probs=99.9
Q ss_pred HHHHHHHhc--CCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccCc
Q 030025 9 LQKILEAYK--GFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMFQ 75 (184)
Q Consensus 9 ~~~l~~~~~--~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~~ 75 (184)
..+++.+++ ..++..+|||||||+|.++..+++..+..+++++|+ +.+++.++++ ++++++.+|..+
T Consensus 81 y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~ 160 (304)
T 3bwc_A 81 YHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLA 160 (304)
T ss_dssp HHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred HHHHHhhhhhhcCCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH
Confidence 445555443 125678999999999999999998877789999999 8888877652 579999999987
Q ss_pred -cC---CCC-CEEEechhhhcCChHHH--HHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCc
Q 030025 76 -SV---PNG-DAILIKWILHDWSDEHC--LKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGG 148 (184)
Q Consensus 76 -~~---~~~-D~i~~~~~l~~~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
.. +.. |+|++....++.+.... .+++++++++|+|||++++.... . . .
T Consensus 161 ~~~~~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~---~-----------~-----------~ 215 (304)
T 3bwc_A 161 FVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES---I-----------W-----------L 215 (304)
T ss_dssp HHHSSCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECC---T-----------T-----------T
T ss_pred HHHhccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC---c-----------c-----------c
Confidence 22 233 99999776655332211 47899999999999999986421 0 0 0
Q ss_pred cccCHHHHHHHHHHcCCceeEEEee
Q 030025 149 KERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 149 ~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
......++.+.++++||..++....
T Consensus 216 ~~~~~~~~~~~l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 216 DLELIEKMSRFIRETGFASVQYALM 240 (304)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred chHHHHHHHHHHHhCCCCcEEEEEe
Confidence 0124678889999999998887754
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-15 Score=111.16 Aligned_cols=139 Identities=9% Similarity=0.083 Sum_probs=102.0
Q ss_pred HHHhcCCC-CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c--CC-C
Q 030025 13 LEAYKGFE-HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S--VP-N 79 (184)
Q Consensus 13 ~~~~~~~~-~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~--~~-~ 79 (184)
....+ .. +..+|||+|||+|.++..++++.+. +++++|+ +.+++.|+++ +++.++.+|+.+ . ++ .
T Consensus 41 ~~~~~-~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~ 118 (259)
T 3lpm_A 41 AKFSY-LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKE 118 (259)
T ss_dssp HHHCC-CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTT
T ss_pred HHHhc-CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccC
Confidence 33444 77 7899999999999999999998765 9999999 8899888764 369999999987 2 32 3
Q ss_pred C-CEEEechhhhcC------------------ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhH
Q 030025 80 G-DAILIKWILHDW------------------SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVL 140 (184)
Q Consensus 80 ~-D~i~~~~~l~~~------------------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 140 (184)
. |+|+++-.++.. .......+++.+.++|+|||++++... .
T Consensus 119 ~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~----------------- 178 (259)
T 3lpm_A 119 RADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---P----------------- 178 (259)
T ss_dssp CEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---T-----------------
T ss_pred CccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---H-----------------
Confidence 3 999996554332 112335799999999999999999421 1
Q ss_pred hhhhCCCccccCHHHHHHHHHHcCCceeEEEeec------CceEEEEEe
Q 030025 141 VMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFF------HNLWVMEFY 183 (184)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~------~~~~~~~~~ 183 (184)
....++.+.+++.||...++.... ....++++.
T Consensus 179 ----------~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 217 (259)
T 3lpm_A 179 ----------ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGI 217 (259)
T ss_dssp ----------TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEE
T ss_pred ----------HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEE
Confidence 135677888999999988776542 244556554
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-15 Score=106.24 Aligned_cols=116 Identities=11% Similarity=-0.026 Sum_probs=88.9
Q ss_pred cHHhHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc
Q 030025 5 TTLVLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ 75 (184)
Q Consensus 5 ~~~~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~ 75 (184)
+..+...+++.+.. ..+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ ++++++++|+.+
T Consensus 26 ~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 104 (189)
T 3p9n_A 26 TDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAA 104 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHH
T ss_pred cHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHH
Confidence 34555566665541 146789999999999999988775 4568999999 8999988764 479999999987
Q ss_pred -c--C-CCC-CEEEechhhhcCChHHHHHHHHHHHh--hCCCCcEEEEEeeecC
Q 030025 76 -S--V-PNG-DAILIKWILHDWSDEHCLKLLKNCHK--SIPEGGKVIVVESVLP 122 (184)
Q Consensus 76 -~--~-~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~--~L~pgG~l~i~~~~~~ 122 (184)
. + ... |+|++...+++. .++...+++.+.+ +|+|||.+++......
T Consensus 105 ~~~~~~~~~fD~i~~~~p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 105 VVAAGTTSPVDLVLADPPYNVD-SADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp HHHHCCSSCCSEEEECCCTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred HHhhccCCCccEEEECCCCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 2 3 233 999998887654 3445689999999 9999999999765543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-16 Score=114.73 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=80.0
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCC--CEEEechhhhcC-Ch
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNG--DAILIKWILHDW-SD 94 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~--D~i~~~~~l~~~-~~ 94 (184)
++..+|||||||+|.++..+++. ..+++++|+ +.+++.++++..-.++.+|+.+ +++.. |+|++..+++|+ ++
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 130 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 130 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence 36789999999999999999987 569999999 8899888765222388899887 55443 999998877665 44
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 95 EHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 95 ~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
...++++++++|+|||++++..+..
T Consensus 131 --~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 131 --KDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp --HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred --HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 3589999999999999999987653
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-16 Score=121.14 Aligned_cols=112 Identities=20% Similarity=0.246 Sum_probs=91.7
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCCCC-
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVPNG- 80 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~~~- 80 (184)
..+.+++.+. ..+..+|||+|||+|.++..+++..|..+++++|. +.+++.++++ .++.+..+|+.+..+..
T Consensus 184 ~~~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~f 262 (343)
T 2pjd_A 184 GSQLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRF 262 (343)
T ss_dssp HHHHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCE
T ss_pred HHHHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCe
Confidence 4677788886 45677999999999999999999998889999999 8888888764 34678889988743444
Q ss_pred CEEEechhhhcC---ChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 81 DAILIKWILHDW---SDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 81 D~i~~~~~l~~~---~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
|+|+++.++|+- ..+....++++++++|+|||.+++....
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 999999998862 3445568999999999999999997653
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.1e-16 Score=108.60 Aligned_cols=109 Identities=13% Similarity=0.103 Sum_probs=86.0
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--CCceEEEcccCc-cC---CC-C-CEEEechhh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--PGVKHVGGDMFQ-SV---PN-G-DAILIKWIL 89 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--~~i~~~~~d~~~-~~---~~-~-D~i~~~~~l 89 (184)
+++..+|||||||. +.+|. +.|++.|+++ .+++++.+|+.+ ++ +. . |+|++..++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 67889999999996 23888 8899988765 369999999987 44 44 3 999999999
Q ss_pred hcC-ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCC
Q 030025 90 HDW-SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGF 165 (184)
Q Consensus 90 ~~~-~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 165 (184)
||+ ++. ..++++++++|||||++++.++....... ....++.++|.++++++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVDN--------------------NSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSCS--------------------SSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCH--HHHHHHHHHHCCCCEEEEEEccccccccc--------------------ccccCCHHHHHHHHHHCCC
Confidence 999 655 47999999999999999997664322100 1112478999999999999
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.1e-16 Score=113.40 Aligned_cols=151 Identities=15% Similarity=0.081 Sum_probs=92.0
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CC--------ceEEE-cccCcc
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PG--------VKHVG-GDMFQS 76 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~--------i~~~~-~d~~~~ 76 (184)
-..++++.++...+..+|||||||||.++..+++.. ..+++++|+ +.|++.+++. ++ +.+.. .|+...
T Consensus 24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (232)
T 3opn_A 24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQG 102 (232)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSC
T ss_pred HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcC
Confidence 355677777622346699999999999999999873 349999999 8888775543 32 32222 222111
Q ss_pred CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHH
Q 030025 77 VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEF 156 (184)
Q Consensus 77 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
. .|.+.+..++.++ ..++++++++|||||.+++.. .+.. +..............+.....+.+++
T Consensus 103 ~--~d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~~------e~~~~~~~~~G~~~d~~~~~~~~~~l 167 (232)
T 3opn_A 103 R--PSFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQF------EAGREQVGKNGIIRDPKVHQMTIEKV 167 (232)
T ss_dssp C--CSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHHH------HSCHHHHC-CCCCCCHHHHHHHHHHH
T ss_pred C--CCEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--Cccc------ccCHHHhCcCCeecCcchhHHHHHHH
Confidence 1 1444444444443 368999999999999999853 1110 00000000000000001123478999
Q ss_pred HHHHHHcCCceeEEEeec
Q 030025 157 TTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~~~~ 174 (184)
.++++++||+++.+...+
T Consensus 168 ~~~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 168 LKTATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHHHTEEEEEEEECS
T ss_pred HHHHHHCCCEEEEEEEcc
Confidence 999999999998887653
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-17 Score=122.55 Aligned_cols=145 Identities=10% Similarity=0.036 Sum_probs=94.0
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc----cCC----CC-CEE
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ----SVP----NG-DAI 83 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~----~~~----~~-D~i 83 (184)
+..+|||+|||+|.++..++++.+..+++++|+ +.|++.|+++ ++++++.+|+.+ +++ .. |+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 567999999999999999999887889999999 8999888764 359999999643 343 23 999
Q ss_pred EechhhhcCCh-------------HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccc
Q 030025 84 LIKWILHDWSD-------------EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKE 150 (184)
Q Consensus 84 ~~~~~l~~~~~-------------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
+++-.+++... +....++.+++++|||||.+.+.+...... ..............+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~---------~~~l~~~g~~~~~~~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS---------LQLKKRLRWYSCMLGKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH---------HHHGGGBSCEEEEESST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH---------HhcccceEEEEECCCCh
Confidence 99866654330 112256788999999999998865432110 00000000000001222
Q ss_pred cCHHHHHHHHHHcCCceeEEEeec
Q 030025 151 RTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 151 ~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
.+.+++.++++++||+.+++....
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEEe
Confidence 345889999999999998877653
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=111.86 Aligned_cols=113 Identities=15% Similarity=0.175 Sum_probs=87.6
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh--CCCCeEEEeec-hhHhhhCCCC---C-------C--------
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK--YPHIKGINFDL-PHVIQHSPEY---P-------G-------- 65 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~--~~~~~~~~~D~-~~~~~~a~~~---~-------~-------- 65 (184)
.++..+++.+. ..+..+|||+|||+|.++..+++. .+..+++++|+ +.+++.|+++ . +
T Consensus 38 ~l~~~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~ 116 (250)
T 1o9g_A 38 EIFQRALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQS 116 (250)
T ss_dssp HHHHHHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhh
Confidence 44555555554 345679999999999999999988 67789999999 8999888743 2 1
Q ss_pred -----------------ce-------------EEEcccCccC------CC-C-CEEEechhhhcCCh-------HHHHHH
Q 030025 66 -----------------VK-------------HVGGDMFQSV------PN-G-DAILIKWILHDWSD-------EHCLKL 100 (184)
Q Consensus 66 -----------------i~-------------~~~~d~~~~~------~~-~-D~i~~~~~l~~~~~-------~~~~~~ 100 (184)
++ +..+|+.+.. .. . |+|+++..+++..+ +....+
T Consensus 117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~ 196 (250)
T 1o9g_A 117 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGL 196 (250)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHH
T ss_pred hhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHH
Confidence 66 9999998843 33 3 99999877666542 455689
Q ss_pred HHHHHhhCCCCcEEEEEeee
Q 030025 101 LKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 101 l~~~~~~L~pgG~l~i~~~~ 120 (184)
++++.++|+|||++++.+..
T Consensus 197 l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 197 LRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHHHHHSCTTCEEEEEESS
T ss_pred HHHHHHhcCCCcEEEEeCcc
Confidence 99999999999999995543
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.9e-15 Score=104.78 Aligned_cols=106 Identities=22% Similarity=0.223 Sum_probs=81.1
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC--CCeEEEeechhHhhhCCCCCCceEEEcccCc-c---------
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP--HIKGINFDLPHVIQHSPEYPGVKHVGGDMFQ-S--------- 76 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~--~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~--------- 76 (184)
..++.+.+..+++..+|||+|||+|.++..++++++ ..+++++|++.+. ..+++.++++|+.+ +
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-----
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccc
Confidence 444666666356778999999999999999999987 6899999994432 24679999999987 4
Q ss_pred ----------------CCC-C-CEEEechhhhcCC----hHH-----HHHHHHHHHhhCCCCcEEEEEe
Q 030025 77 ----------------VPN-G-DAILIKWILHDWS----DEH-----CLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 77 ----------------~~~-~-D~i~~~~~l~~~~----~~~-----~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
++. . |+|++..++++.. +.. ...+++++.++|+|||.+++..
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 343 3 9999988777642 111 1247999999999999999854
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-15 Score=103.49 Aligned_cols=110 Identities=19% Similarity=0.209 Sum_probs=86.1
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeechhHhhhCCCCCCceEEEcccCc-c--------
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQ-S-------- 76 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~-------- 76 (184)
.....+++.+....+..+|||+|||+|.++..+++.+ +..+++++|.+.+++. +++.+..+|+.+ +
T Consensus 8 ~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T 1ej0_A 8 FKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI----VGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC----TTEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccccc----CcEEEEEcccccchhhhhhhcc
Confidence 3445666666535677899999999999999999984 6789999999335433 789999999987 4
Q ss_pred CCC-C-CEEEechhhhcCChHH---------HHHHHHHHHhhCCCCcEEEEEeee
Q 030025 77 VPN-G-DAILIKWILHDWSDEH---------CLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 77 ~~~-~-D~i~~~~~l~~~~~~~---------~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
++. . |+|++..++++.+... ...+++++.++|+|||.+++....
T Consensus 84 ~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred CCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 553 3 9999998888765431 147899999999999999997653
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=109.80 Aligned_cols=105 Identities=12% Similarity=0.173 Sum_probs=87.7
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc-
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS- 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~- 76 (184)
...+...+++.+. ..+..+|||+|||+|..+..+++. ..+++++|. +.+++.++++ +++++..+|..+.
T Consensus 62 ~~~~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 138 (210)
T 3lbf_A 62 QPYMVARMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW 138 (210)
T ss_dssp CHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred CHHHHHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 3456777888887 888999999999999999999998 579999999 8898888753 5799999999873
Q ss_pred CC-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 77 VP-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 77 ~~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.+ .. |+|++..+++++++ ++.+.|+|||++++....
T Consensus 139 ~~~~~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 139 QARAPFDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GGGCCEEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred ccCCCccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 22 23 99999999999875 478899999999996654
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.5e-16 Score=114.40 Aligned_cols=121 Identities=10% Similarity=0.061 Sum_probs=93.8
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCC----CC-CEEEec
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVP----NG-DAILIK 86 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~----~~-D~i~~~ 86 (184)
.+..+|||||||+|..+..++..+|..+++++|. +.+++.++++ .+++++++|+.+ +.. .. |+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4678999999999999999999999999999999 8888888764 469999999987 331 33 999996
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCc
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFS 166 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 166 (184)
.+ .+. ..+++.+.++|||||++++....... ....++.+.+++.||+
T Consensus 159 a~----~~~--~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------------~e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AV----APL--CVLSELLLPFLEVGGAAVAMKGPRVE---------------------------EELAPLPPALERLGGR 205 (249)
T ss_dssp SS----CCH--HHHHHHHGGGEEEEEEEEEEECSCCH---------------------------HHHTTHHHHHHHHTEE
T ss_pred Cc----CCH--HHHHHHHHHHcCCCeEEEEEeCCCcH---------------------------HHHHHHHHHHHHcCCe
Confidence 54 222 37899999999999999985421100 0134566778889999
Q ss_pred eeEEEee
Q 030025 167 GIRFVCF 173 (184)
Q Consensus 167 ~i~~~~~ 173 (184)
..++...
T Consensus 206 ~~~~~~~ 212 (249)
T 3g89_A 206 LGEVLAL 212 (249)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8887654
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-15 Score=116.55 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=89.5
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhC-------CC--------CCCceEE
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHS-------PE--------YPGVKHV 69 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a-------~~--------~~~i~~~ 69 (184)
..++..+++.+. +.+..+|||||||+|..+..+++.++..+++|+|+ +.+++.| ++ ..+++++
T Consensus 228 p~~v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i 306 (433)
T 1u2z_A 228 PNFLSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS 306 (433)
T ss_dssp HHHHHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred HHHHHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence 346778888887 88899999999999999999999877778999999 7777666 43 2578898
Q ss_pred EcccC-cc--C----CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 70 GGDMF-QS--V----PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 70 ~~d~~-~~--~----~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
.+|.. .+ + ...|+|+++.+++ . ++...+|+++.+.|||||++++.+...+..
T Consensus 307 ~gD~~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 307 LKKSFVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp ESSCSTTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred EcCccccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 87654 21 2 2239999877663 2 344578999999999999999988766543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.62 E-value=7.6e-16 Score=110.26 Aligned_cols=104 Identities=13% Similarity=0.205 Sum_probs=82.1
Q ss_pred HhHHHHHHHhcCCC---CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc
Q 030025 7 LVLQKILEAYKGFE---HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS 76 (184)
Q Consensus 7 ~~~~~l~~~~~~~~---~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~ 76 (184)
.+.+.+++.+. .. +..+|||+|||+|..+..+++.+|..+++++|. +.+++.++++ +++.+..+|+.+.
T Consensus 49 ~~~~~~~~~l~-~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 127 (207)
T 1jsx_A 49 MLVRHILDSIV-VAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF 127 (207)
T ss_dssp HHHHHHHHHHH-HGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS
T ss_pred HHHHHHHhhhh-hhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhC
Confidence 34556666654 22 368999999999999999999999999999999 8888877653 4599999999873
Q ss_pred CC-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 77 VP-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 77 ~~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
.+ .. |+|++... .+. ..+++++.++|+|||.+++.
T Consensus 128 ~~~~~~D~i~~~~~----~~~--~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 128 PSEPPFDGVISRAF----ASL--NDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp CCCSCEEEEECSCS----SSH--HHHHHHHTTSEEEEEEEEEE
T ss_pred CccCCcCEEEEecc----CCH--HHHHHHHHHhcCCCcEEEEE
Confidence 33 33 99997542 222 37899999999999999995
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=114.33 Aligned_cols=128 Identities=14% Similarity=0.152 Sum_probs=100.2
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPN 79 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~ 79 (184)
...++..+. +.+..+|||+|||+|.++..+++. .|..+++++|. +.+++.++++ +++.+..+|+.+.++.
T Consensus 101 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 101 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 346677776 788899999999999999999999 67889999999 8888888764 4789999999875543
Q ss_pred -C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHH
Q 030025 80 -G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFT 157 (184)
Q Consensus 80 -~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
. |+|++. .+++ ..+++++.++|+|||++++.++... ...++.
T Consensus 180 ~~~D~V~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~-----------------------------~~~~~~ 223 (277)
T 1o54_A 180 KDVDALFLD-----VPDP--WNYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETL 223 (277)
T ss_dssp CSEEEEEEC-----CSCG--GGTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred CccCEEEEC-----CcCH--HHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 3 999983 3333 3689999999999999999763210 135566
Q ss_pred HHHHHcCCceeEEEee
Q 030025 158 TLATEAGFSGIRFVCF 173 (184)
Q Consensus 158 ~~l~~aGf~~i~~~~~ 173 (184)
+.++++||..++....
T Consensus 224 ~~l~~~gf~~~~~~~~ 239 (277)
T 1o54_A 224 KKLQELPFIRIEVWES 239 (277)
T ss_dssp HHHHHSSEEEEEEECC
T ss_pred HHHHHCCCceeEEEEE
Confidence 7788899988877653
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.1e-16 Score=119.43 Aligned_cols=108 Identities=18% Similarity=0.123 Sum_probs=88.4
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCc-cCCC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ-SVPN 79 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~-~~~~ 79 (184)
..+.+++.+. ..+..+|||||||+|.++..+++. +..+++++|.+.+++.+++. ++++++.+|+.+ +.+.
T Consensus 38 y~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 115 (348)
T 2y1w_A 38 YQRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE 115 (348)
T ss_dssp HHHHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred HHHHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCC
Confidence 4566777776 677899999999999999988886 45699999995577766542 579999999988 5555
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
. |+|++..+++|+..+.....+.+++++|||||.+++.
T Consensus 116 ~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 116 QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred ceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 5 9999999999887666567888999999999999864
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=108.18 Aligned_cols=99 Identities=12% Similarity=0.053 Sum_probs=79.7
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc---C-----CCCC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS---V-----PNGD 81 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~---~-----~~~D 81 (184)
..+..+|||||||+|..+..+++.+| ..+++++|+ +.+++.++++ ++++++.+|+.+. + ...|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 44678999999999999999999987 789999999 8888887653 4699999999762 1 1249
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
+|++..... ....+++++.++|+|||.+++.+....
T Consensus 136 ~v~~d~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDADKQ-----NNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSCGG-----GHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred EEEEcCCcH-----HHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 999866533 234789999999999999998776543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=104.15 Aligned_cols=130 Identities=9% Similarity=0.039 Sum_probs=101.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCC---CCCEEEech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVP---NGDAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~---~~D~i~~~~ 87 (184)
.++..+|+|||||+|.++..+++..|..+++++|+ +.+++.|+++ +++++..+|..+.++ ..|+|++.+
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 34668999999999999999999988889999999 8999988764 469999999987544 249998866
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCce
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSG 167 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 167 (184)
+-. +-...++....+.|+|+|+|++.-. . ....+.+++++.||..
T Consensus 93 ~Gg----~~i~~Il~~~~~~L~~~~~lVlq~~---~----------------------------~~~~vr~~L~~~Gf~i 137 (225)
T 3kr9_A 93 MGG----RLIARILEEGLGKLANVERLILQPN---N----------------------------REDDLRIWLQDHGFQI 137 (225)
T ss_dssp ECH----HHHHHHHHHTGGGCTTCCEEEEEES---S----------------------------CHHHHHHHHHHTTEEE
T ss_pred CCh----HHHHHHHHHHHHHhCCCCEEEEECC---C----------------------------CHHHHHHHHHHCCCEE
Confidence 532 3345789999999999999988332 1 3677889999999999
Q ss_pred eEEEee---cCceEEEEEe
Q 030025 168 IRFVCF---FHNLWVMEFY 183 (184)
Q Consensus 168 i~~~~~---~~~~~~~~~~ 183 (184)
++..-. ...+.++.+.
T Consensus 138 ~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 138 VAESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEEE
Confidence 876533 2344455543
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-15 Score=108.49 Aligned_cols=105 Identities=11% Similarity=0.130 Sum_probs=87.6
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSV 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~ 77 (184)
..+...+++.+. ..+..+|||+|||+|..+..+++.. +..+++++|. +.+++.++++ +++.+..+|....+
T Consensus 63 ~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 141 (215)
T 2yxe_A 63 IHMVGMMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGY 141 (215)
T ss_dssp HHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCC
T ss_pred HHHHHHHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC
Confidence 455667888887 8888999999999999999999986 6689999999 8898888764 57999999987644
Q ss_pred C--CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 78 P--NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 78 ~--~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+ .. |+|++..+++|++ +++.+.|+|||++++...
T Consensus 142 ~~~~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 142 EPLAPYDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp GGGCCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCCCCeeEEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 3 23 9999999999876 368899999999999754
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=9e-15 Score=109.59 Aligned_cols=121 Identities=16% Similarity=0.157 Sum_probs=93.5
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCCC-CEEEechh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPNG-DAILIKWI 88 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~-D~i~~~~~ 88 (184)
.++..+|||+|||+|.++..+++..+. +++++|+ +.+++.|+++ ++++++.+|+.+ ..... |+|++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 356789999999999999999998765 8999999 8999888753 348899999998 33333 99998544
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCcee
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGI 168 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i 168 (184)
.. ...+++++.++|+|||.+++.+....... .....+++.+.++++||+..
T Consensus 202 ~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----------------------~~~~~~~i~~~~~~~G~~~~ 252 (278)
T 2frn_A 202 VR------THEFIPKALSIAKDGAIIHYHNTVPEKLM-----------------------PREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp SS------GGGGHHHHHHHEEEEEEEEEEEEEEGGGT-----------------------TTTTHHHHHHHHHHTTCEEE
T ss_pred hh------HHHHHHHHHHHCCCCeEEEEEEeeccccc-----------------------cccHHHHHHHHHHHcCCeeE
Confidence 22 13689999999999999999886542210 01246778899999999876
Q ss_pred E
Q 030025 169 R 169 (184)
Q Consensus 169 ~ 169 (184)
.
T Consensus 253 ~ 253 (278)
T 2frn_A 253 K 253 (278)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=103.61 Aligned_cols=130 Identities=9% Similarity=-0.026 Sum_probs=102.4
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccC-CC--CCEEEech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSV-PN--GDAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~-~~--~D~i~~~~ 87 (184)
.++..+|+|||||+|.++..+++..|..+++++|+ +.+++.|+++ +++++..+|..+.+ +. .|+|++.+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 45678999999999999999999988889999999 8999988764 46999999999843 32 39998766
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCce
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSG 167 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 167 (184)
+.. +-...++.+..+.|+++|+|++.-.. ....+++++.+.||..
T Consensus 99 mGg----~lI~~IL~~~~~~l~~~~~lIlqp~~-------------------------------~~~~lr~~L~~~Gf~i 143 (230)
T 3lec_A 99 MGG----RLIADILNNDIDKLQHVKTLVLQPNN-------------------------------REDDLRKWLAANDFEI 143 (230)
T ss_dssp ECH----HHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHTTEEE
T ss_pred Cch----HHHHHHHHHHHHHhCcCCEEEEECCC-------------------------------ChHHHHHHHHHCCCEE
Confidence 543 33457899999999999999884410 3678899999999999
Q ss_pred eEEEee---cCceEEEEEe
Q 030025 168 IRFVCF---FHNLWVMEFY 183 (184)
Q Consensus 168 i~~~~~---~~~~~~~~~~ 183 (184)
++..-. ...+.++.+.
T Consensus 144 ~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 144 VAEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEEC--CEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEEE
Confidence 887643 3455566554
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-15 Score=109.57 Aligned_cols=99 Identities=10% Similarity=0.219 Sum_probs=79.1
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc---cCC-----CC-
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ---SVP-----NG- 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~---~~~-----~~- 80 (184)
..+..+|||||||+|..+..+++..+ ..+++++|+ +.+++.|+++ ++++++.+|+.+ ..+ ..
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34578999999999999999999864 789999999 8999988764 469999999854 222 23
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
|+|++....+++.+. ..+++.+ ++|+|||++++.+..
T Consensus 136 D~V~~d~~~~~~~~~--~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 136 DMVFLDHWKDRYLPD--TLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp SEEEECSCGGGHHHH--HHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEEcCCcccchHH--HHHHHhc-cccCCCeEEEEeCCC
Confidence 999998877765432 3677777 999999999996654
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-15 Score=109.17 Aligned_cols=99 Identities=12% Similarity=0.263 Sum_probs=74.6
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCC------------CCCCceEEEcccCc--c--CCCC--
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSP------------EYPGVKHVGGDMFQ--S--VPNG-- 80 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~------------~~~~i~~~~~d~~~--~--~~~~-- 80 (184)
.+..+|||||||+|.++..+++.+|...++|+|+ +.|++.|+ ...++.++.+|+.+ + ++..
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567899999999999999999999999999999 88887553 23689999999986 2 4443
Q ss_pred CEEEechhhhcCChH--H----HHHHHHHHHhhCCCCcEEEEEe
Q 030025 81 DAILIKWILHDWSDE--H----CLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 81 D~i~~~~~l~~~~~~--~----~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
|.|++...-.+.... . ...+++++.++|||||.|++..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 988875433221100 0 0268999999999999999864
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.6e-15 Score=108.98 Aligned_cols=104 Identities=9% Similarity=0.199 Sum_probs=78.9
Q ss_pred HHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccCcc-----
Q 030025 13 LEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMFQS----- 76 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~~~----- 76 (184)
....+ ..+..+|||+|||+|.++..++++.|..+++++|+ +.+++.|+++ +++.++.+|+.+.
T Consensus 29 ~~~~~-~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~ 107 (260)
T 2ozv_A 29 ASLVA-DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARV 107 (260)
T ss_dssp HHTCC-CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHH
T ss_pred HHHhc-ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhh
Confidence 33444 66778999999999999999999998899999999 8888877543 2489999999874
Q ss_pred ---CCC-C-CEEEechhhhcC----------------ChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 77 ---VPN-G-DAILIKWILHDW----------------SDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 77 ---~~~-~-D~i~~~~~l~~~----------------~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
++. . |+|+++-.++.. .......+++.+.++|+|||++++.
T Consensus 108 ~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 108 EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp HTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 223 3 999997433321 1112357899999999999999984
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-15 Score=110.88 Aligned_cols=107 Identities=17% Similarity=0.261 Sum_probs=84.0
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCC--
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVP-- 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~-- 78 (184)
...+...+. ..+..+|||||||+|..+..+++..+..+++++|+ +.+++.|+++ ++++++.+|+.+..+
T Consensus 60 ~~~l~~~~~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 138 (232)
T 3ntv_A 60 LDLIKQLIR-MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENV 138 (232)
T ss_dssp HHHHHHHHH-HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHH
T ss_pred HHHHHHHHh-hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhh
Confidence 344444444 55688999999999999999999888899999999 8898888763 479999999987322
Q ss_pred --CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 79 --NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 79 --~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.. |+|++..... ....+++++.++|+|||++++.+...
T Consensus 139 ~~~~fD~V~~~~~~~-----~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 139 NDKVYDMIFIDAAKA-----QSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp TTSCEEEEEEETTSS-----SHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred ccCCccEEEEcCcHH-----HHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 33 9999865433 23468999999999999998866544
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.8e-15 Score=108.51 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=80.5
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc--c-C-----CCC-
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ--S-V-----PNG- 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~--~-~-----~~~- 80 (184)
..+..+|||||||+|..+..+++..+ ..+++++|+ +.+++.|+++ ++++++.+|+.+ + . ...
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 34578999999999999999999875 789999999 8888887664 479999999976 2 2 233
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
|+|++.... .....+++++.++|+|||.+++.+.....
T Consensus 138 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 138 DFIFIDADK-----TNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEEESCG-----GGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred eEEEEcCCh-----HHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 999886542 23347899999999999999998776544
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-15 Score=113.83 Aligned_cols=104 Identities=15% Similarity=0.243 Sum_probs=87.6
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~ 77 (184)
.....+++.+. ..+..+|||||||+|.++..+++..+ ..+++++|+ +.+++.++++ ++++++.+|+.+ ..
T Consensus 62 ~~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~ 140 (317)
T 1dl5_A 62 SLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP 140 (317)
T ss_dssp HHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred HHHHHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc
Confidence 66778888887 88899999999999999999999876 478999999 8898888754 569999999987 32
Q ss_pred C-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 78 P-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 78 ~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+ .. |+|++..+++|++ +++.+.|||||++++...
T Consensus 141 ~~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 141 EFSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GGCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred cCCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence 2 23 9999999999986 457889999999999754
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=106.31 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=76.7
Q ss_pred CCCeEEEecCCcChHHHHHHhh----CCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCcc--C---CC--CCEEEech
Q 030025 21 HIKQLVDVGGSLGNTLKAITSK----YPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQS--V---PN--GDAILIKW 87 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~~--~---~~--~D~i~~~~ 87 (184)
+..+|||||||+|..+..+++. .+..+++++|+ +.+++.|+.. ++++++.+|..+. + .. .|+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 4689999999999999999987 67899999999 8898888653 6899999999862 2 22 39998866
Q ss_pred hhhcCChHHHHHHHHHHHh-hCCCCcEEEEEee
Q 030025 88 ILHDWSDEHCLKLLKNCHK-SIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~-~L~pgG~l~i~~~ 119 (184)
. | . +...+|+++.+ .|||||++++.+.
T Consensus 161 ~-~-~---~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 161 A-H-A---NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp S-C-S---SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred c-h-H---hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 5 3 2 22468999997 9999999999664
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-15 Score=116.45 Aligned_cols=108 Identities=11% Similarity=0.175 Sum_probs=84.7
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCC------cChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGS------LGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G------~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~ 77 (184)
.+.+.+++.+. .+..+||||||| +|..+..++++ +|+.+++++|+ +.|. ...++++++++|+.+ ++
T Consensus 204 ~~Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf 278 (419)
T 3sso_A 204 PHYDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEF 278 (419)
T ss_dssp HHHHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHH
T ss_pred HHHHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccch
Confidence 45677777765 456899999999 77777777776 68999999999 7774 234789999999988 44
Q ss_pred C-------CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 78 P-------NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 78 ~-------~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
. .. |+|++.. .|++. +....|++++++|||||++++.|...+
T Consensus 279 ~~~l~~~d~sFDlVisdg-sH~~~--d~~~aL~el~rvLKPGGvlVi~Dl~ts 328 (419)
T 3sso_A 279 LDRIARRYGPFDIVIDDG-SHINA--HVRTSFAALFPHVRPGGLYVIEDMWTA 328 (419)
T ss_dssp HHHHHHHHCCEEEEEECS-CCCHH--HHHHHHHHHGGGEEEEEEEEEECGGGG
T ss_pred hhhhhcccCCccEEEECC-cccch--hHHHHHHHHHHhcCCCeEEEEEecccc
Confidence 3 33 9999865 45543 345889999999999999999987643
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.4e-15 Score=107.60 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=87.2
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCccCC-
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQSVP- 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~~~~- 78 (184)
...+...+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ .++.++.+|+.+..+
T Consensus 55 ~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~ 131 (231)
T 1vbf_A 55 ALNLGIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEE 131 (231)
T ss_dssp CHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGG
T ss_pred CHHHHHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccccc
Confidence 3456778888887 8888999999999999999999986 79999999 8888888764 279999999987332
Q ss_pred -CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 79 -NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 79 -~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.. |+|++..+++|+.+ ++.+.|+|||++++....
T Consensus 132 ~~~fD~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 132 EKPYDRVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp GCCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 23 99999999998863 578899999999997643
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-15 Score=119.85 Aligned_cols=108 Identities=18% Similarity=0.114 Sum_probs=88.9
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCc-cCC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~-~~~ 78 (184)
...+.+++.+. ..+..+|||||||+|.++..+++ .+..+++++|++.+++.|++. ++++++.+|+.+ +.+
T Consensus 145 ~~~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~ 222 (480)
T 3b3j_A 145 TYQRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP 222 (480)
T ss_dssp HHHHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS
T ss_pred HHHHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccC
Confidence 34566777776 66788999999999999998887 466799999994487777653 579999999988 665
Q ss_pred CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 79 NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 79 ~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.. |+|++..+++|+..++....+.++++.|||||.+++
T Consensus 223 ~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 223 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 55 999999888888767667888899999999999985
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.5e-15 Score=109.57 Aligned_cols=94 Identities=18% Similarity=0.268 Sum_probs=79.5
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc-cCCCC--CEEEechhhhcCCh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SVPNG--DAILIKWILHDWSD 94 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~~~~--D~i~~~~~l~~~~~ 94 (184)
.+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++. +++.+..+|+.+ +++.. |+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 5678999999999999999999888889999999 8899888765 789999999987 55543 999986652
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 95 EHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 95 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
..++++.++|+|||++++.++...
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred ----hhHHHHHHhcCCCcEEEEEEcCHH
Confidence 248999999999999999887543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-15 Score=104.31 Aligned_cols=114 Identities=11% Similarity=0.015 Sum_probs=87.6
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ 75 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~ 75 (184)
....+.+.+++.+....+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ ++++++.+|+.+
T Consensus 27 ~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 105 (187)
T 2fhp_A 27 TTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR 105 (187)
T ss_dssp CCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred CHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHH
Confidence 355677778888753567889999999999999988874 4579999999 8899888764 469999999977
Q ss_pred cC------CCC-CEEEechhhhcCChHHHHHHHHHH--HhhCCCCcEEEEEeeec
Q 030025 76 SV------PNG-DAILIKWILHDWSDEHCLKLLKNC--HKSIPEGGKVIVVESVL 121 (184)
Q Consensus 76 ~~------~~~-D~i~~~~~l~~~~~~~~~~~l~~~--~~~L~pgG~l~i~~~~~ 121 (184)
.. +.. |+|++..+++....+ .+++.+ .++|+|||.+++.....
T Consensus 106 ~~~~~~~~~~~fD~i~~~~~~~~~~~~---~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 106 ALEQFYEEKLQFDLVLLDPPYAKQEIV---SQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHHHHHTTCCEEEEEECCCGGGCCHH---HHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHHHhcCCCCCEEEECCCCCchhHH---HHHHHHHHhcccCCCCEEEEEeCCc
Confidence 21 233 999998775533332 456666 88899999999876544
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-15 Score=108.62 Aligned_cols=106 Identities=16% Similarity=0.214 Sum_probs=87.6
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSV 77 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~ 77 (184)
+..+...+++.+. ..+..+|||||||+|.++..+++..+ .+++++|. +.+++.++++ +++.+..+|...++
T Consensus 76 ~~~~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 153 (235)
T 1jg1_A 76 APHMVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF 153 (235)
T ss_dssp CHHHHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred cHHHHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCC
Confidence 3456778888887 88889999999999999999999977 79999998 8888888763 46899999985444
Q ss_pred CC---CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 78 PN---GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 78 ~~---~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+. .|+|++..+++++.+ ++.+.|+|||++++....
T Consensus 154 ~~~~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 154 PPKAPYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp GGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred CCCCCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEec
Confidence 32 399999999998763 578899999999996643
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=107.39 Aligned_cols=99 Identities=18% Similarity=0.151 Sum_probs=80.0
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc---cCC---CCCEE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ---SVP---NGDAI 83 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~---~~~---~~D~i 83 (184)
..+..+|||||||+|..+..+++..| ..+++++|+ +.+++.|+++ ++++++.+|+.+ ... ..|+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 44678999999999999999999987 789999999 8888888764 479999999876 222 23999
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
++.... +....+++++.++|||||++++.+....
T Consensus 141 ~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 141 FIDADK-----PNNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp EECSCG-----GGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred EECCch-----HHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 986532 2334789999999999999999776543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-14 Score=102.98 Aligned_cols=130 Identities=9% Similarity=0.052 Sum_probs=101.0
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCC-C--CCEEEech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVP-N--GDAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~-~--~D~i~~~~ 87 (184)
.++..+|||||||+|.++..+++..|..+++++|+ +.+++.|+++ +++++..+|..+.++ . .|+|++.+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 45678999999999999999999988889999999 8999988764 459999999998433 2 49998765
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCce
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSG 167 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 167 (184)
+.. +-...++.+..+.|+++|+|++.-.. ....+++++.+.||..
T Consensus 99 mGg----~lI~~IL~~~~~~L~~~~~lIlq~~~-------------------------------~~~~lr~~L~~~Gf~i 143 (244)
T 3gnl_A 99 MGG----TLIRTILEEGAAKLAGVTKLILQPNI-------------------------------AAWQLREWSEQNNWLI 143 (244)
T ss_dssp ECH----HHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHHTEEE
T ss_pred Cch----HHHHHHHHHHHHHhCCCCEEEEEcCC-------------------------------ChHHHHHHHHHCCCEE
Confidence 533 33457899999999999999984310 3678889999999998
Q ss_pred eEEEee---cCceEEEEEe
Q 030025 168 IRFVCF---FHNLWVMEFY 183 (184)
Q Consensus 168 i~~~~~---~~~~~~~~~~ 183 (184)
++..-. ...+.++.+.
T Consensus 144 ~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 144 TSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEEE
Confidence 765533 2344565553
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-15 Score=105.11 Aligned_cols=114 Identities=8% Similarity=0.017 Sum_probs=85.6
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~ 76 (184)
...+...+++.+....+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ ++++++.+|+.+.
T Consensus 15 ~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 93 (177)
T 2esr_A 15 SDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA 93 (177)
T ss_dssp ---CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh
Confidence 44566777777764557789999999999999999987 5579999999 8898888653 3689999998762
Q ss_pred ---CCCC-CEEEechhhhcCChHHHHHHHHHHH--hhCCCCcEEEEEeeecC
Q 030025 77 ---VPNG-DAILIKWILHDWSDEHCLKLLKNCH--KSIPEGGKVIVVESVLP 122 (184)
Q Consensus 77 ---~~~~-D~i~~~~~l~~~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~~~ 122 (184)
.+.. |+|++...++. .....+++.+. ++|+|||.+++......
T Consensus 94 ~~~~~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 94 IDCLTGRFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp HHHBCSCEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred HHhhcCCCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 2233 99999876543 22235677776 99999999999775543
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6e-15 Score=107.87 Aligned_cols=132 Identities=11% Similarity=0.004 Sum_probs=101.2
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCCC-CEEEechhhhc
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPNG-DAILIKWILHD 91 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~~-D~i~~~~~l~~ 91 (184)
++..+|||||||+|-++..++...|..+|+++|+ +.|++.++++ .+..+...|... +.+.. |++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 9999988775 457889999987 44443 99999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEE
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFV 171 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~ 171 (184)
+++++....+ ++.+.|+|+|.++-.+.-.-.... .. -.......|.+.+.+.|...-+..
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs--------~g-----------m~~~Y~~~~e~~~~~~g~~~~~~~ 270 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRS--------KG-----------MFQNYSQSFESQARERSCRIQRLE 270 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC---------------C-----------HHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCC--------cc-----------hhhHHHHHHHHHHHhcCCceeeee
Confidence 9877766777 899999999998876641101000 01 112247889999999998544433
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-14 Score=110.13 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=90.9
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ 75 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~ 75 (184)
....++..++.... +.+..+|||+|||+|.++..++... +..+++++|+ +.+++.|+++ +++++.++|+.+
T Consensus 187 l~~~la~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~ 265 (354)
T 3tma_A 187 LTPVLAQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARH 265 (354)
T ss_dssp CCHHHHHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGG
T ss_pred cCHHHHHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhh
Confidence 34556777888877 8889999999999999999999987 8899999999 9999988764 379999999988
Q ss_pred -cCC-CC-CEEEechhhhcCCh--H----HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 76 -SVP-NG-DAILIKWILHDWSD--E----HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 76 -~~~-~~-D~i~~~~~l~~~~~--~----~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+.+ .. |+|+++-.+..... . ....+++++++.|+|||.+++..
T Consensus 266 ~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 266 LPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp GGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred CccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 433 23 99999665544211 1 12578999999999999999964
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-15 Score=115.43 Aligned_cols=109 Identities=14% Similarity=0.140 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCc-cCCCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~ 80 (184)
.+.+.+... ..+..+|||||||+|.++..++++. ..+++++|.+.|++.++++ ++++++.+|+.+ +.+..
T Consensus 52 ~~~i~~~~~-~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 129 (376)
T 3r0q_C 52 FNAVFQNKH-HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEK 129 (376)
T ss_dssp HHHHHTTTT-TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSC
T ss_pred HHHHHhccc-cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCc
Confidence 344444445 6788999999999999999999873 3499999997777777653 459999999988 55544
Q ss_pred -CEEEechhhhcCCh-HHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 81 -DAILIKWILHDWSD-EHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 81 -D~i~~~~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
|+|++..+.|++.. .....+++.+.++|||||.+++.+.
T Consensus 130 ~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 130 VDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp EEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred ceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 99999776666542 2344789999999999999987654
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=112.05 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=81.0
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCc-cCC-C
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ-SVP-N 79 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~-~~~-~ 79 (184)
.+.+.+.+. ..+..+|||||||+|.++..+++. +..+++++|.+.|++.|+++ ++++++.+|+.+ +++ .
T Consensus 53 ~~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 130 (340)
T 2fyt_A 53 RDFIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVE 130 (340)
T ss_dssp HHHHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCS
T ss_pred HHHHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCC
Confidence 355666665 677899999999999999998887 34699999994488877653 579999999988 665 3
Q ss_pred C-CEEEechhhhcCC-hHHHHHHHHHHHhhCCCCcEEE
Q 030025 80 G-DAILIKWILHDWS-DEHCLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~ 115 (184)
. |+|++..+.+.+. ......+++++.++|||||.++
T Consensus 131 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 131 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred cEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 3 9999876433221 2233478999999999999998
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-15 Score=115.25 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=76.9
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCc-cCCC-C-CEEEechh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ-SVPN-G-DAILIKWI 88 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~-~~~~-~-D~i~~~~~ 88 (184)
..+..+|||||||+|.++..+++. +..+++++|.+.+++.|+++ ++++++.+|+.+ +++. . |+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 456789999999999999999987 55699999995588777653 349999999998 6663 3 99999776
Q ss_pred hhcCC-hHHHHHHHHHHHhhCCCCcEEEE
Q 030025 89 LHDWS-DEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 89 l~~~~-~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.+++. .+....+++.+.++|||||+++.
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 54442 22334789999999999999874
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=112.37 Aligned_cols=96 Identities=11% Similarity=0.106 Sum_probs=81.2
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCC-CC-CEEEechhhhc
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVP-NG-DAILIKWILHD 91 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~-~~-D~i~~~~~l~~ 91 (184)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.++++ .+++++.+|+.+ ..+ .. |+|+++.++|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999997 569999999 8899888764 358999999988 333 23 99999999887
Q ss_pred ---CChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 92 ---WSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 92 ---~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
...+....+++++.+.|+|||.+++..
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 334556689999999999999999964
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-14 Score=106.32 Aligned_cols=104 Identities=14% Similarity=0.229 Sum_probs=84.5
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC---------CCceEEEcccCc-
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY---------PGVKHVGGDMFQ- 75 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~---------~~i~~~~~d~~~- 75 (184)
....++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.++++ +++.+..+|+.+
T Consensus 87 ~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~ 165 (280)
T 1i9g_A 87 DAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 165 (280)
T ss_dssp HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence 4567777777 888899999999999999999986 56789999999 8888777642 479999999987
Q ss_pred cCCC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 76 SVPN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 76 ~~~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+++. . |+|++ +.+++. .+++++.++|+|||++++..+
T Consensus 166 ~~~~~~~D~v~~-----~~~~~~--~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 166 ELPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCceeEEEE-----CCcCHH--HHHHHHHHhCCCCCEEEEEeC
Confidence 4443 3 99988 333332 689999999999999999764
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.54 E-value=7e-15 Score=107.27 Aligned_cols=108 Identities=11% Similarity=0.233 Sum_probs=85.5
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc--c-
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ--S- 76 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~--~- 76 (184)
....+...+. ..+..+|||+|||+|..+..+++..|..+++++|. +.+++.|+++ +++.++.+|+.+ +
T Consensus 42 ~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 120 (233)
T 2gpy_A 42 GMESLLHLLK-MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEK 120 (233)
T ss_dssp HHHHHHHHHH-HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHH
T ss_pred HHHHHHHHHh-ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh
Confidence 3444444444 55678999999999999999999998899999999 8888888764 469999999976 2
Q ss_pred C--CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 77 V--PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 77 ~--~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
. +.. |+|++....+ ....+++++.++|+|||++++.+...
T Consensus 121 ~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 121 LELYPLFDVLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp HTTSCCEEEEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred cccCCCccEEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 2 233 9999977754 22478999999999999999976543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=97.88 Aligned_cols=109 Identities=18% Similarity=0.315 Sum_probs=79.5
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccC-------
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSV------- 77 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~------- 77 (184)
+..-..++.+.+..+++..+|||+|||+|.++..++++ ..+++++|++.+ ...+++.++++|+.+..
T Consensus 9 a~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~ 82 (191)
T 3dou_A 9 AAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDR 82 (191)
T ss_dssp HHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHH
Confidence 34445567777764577899999999999999999988 679999998433 23468999999998721
Q ss_pred -------CCCCEEEechhhhcCC---------hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 78 -------PNGDAILIKWILHDWS---------DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 78 -------~~~D~i~~~~~l~~~~---------~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+..|+|++........ .+....+++.+.++|||||.+++...
T Consensus 83 ~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 83 ALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 2239999854322111 11124678999999999999998553
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-14 Score=111.32 Aligned_cols=104 Identities=14% Similarity=0.206 Sum_probs=82.2
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC-----------------CCceEE
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY-----------------PGVKHV 69 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~-----------------~~i~~~ 69 (184)
...++..+. ..+..+|||+|||+|.++..+++. .+..+++++|. +.+++.|+++ +++++.
T Consensus 94 ~~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 94 INMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 566777777 888899999999999999999998 57789999999 8888877652 479999
Q ss_pred EcccCcc---CCC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 70 GGDMFQS---VPN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 70 ~~d~~~~---~~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.+|+.+. ++. . |+|++... .+. .+++++.+.|+|||++++..+.
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~~-----~~~--~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDML-----NPH--VTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ESCTTCCC-------EEEEEECSS-----STT--TTHHHHGGGEEEEEEEEEEESS
T ss_pred ECChHHcccccCCCCeeEEEECCC-----CHH--HHHHHHHHhcCCCcEEEEEeCC
Confidence 9999872 333 3 99998432 221 3799999999999999987653
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.2e-14 Score=104.22 Aligned_cols=107 Identities=15% Similarity=0.025 Sum_probs=77.3
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC--C------CceEE--EcccCccCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY--P------GVKHV--GGDMFQSVP 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~--~------~i~~~--~~d~~~~~~ 78 (184)
...+.+... +.+..+|||+|||+|.++..++++ .+++++|++.|...+++. + ++.++ ++|+.+..+
T Consensus 63 L~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~ 138 (265)
T 2oxt_A 63 LAWMEERGY-VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPV 138 (265)
T ss_dssp HHHHHHHTS-CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCC
T ss_pred HHHHHHcCC-CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCC
Confidence 344555533 677889999999999999999887 689999994465444332 2 68999 899987223
Q ss_pred CC-CEEEechhhhcCChHH-----HHHHHHHHHhhCCCCc--EEEEEeee
Q 030025 79 NG-DAILIKWILHDWSDEH-----CLKLLKNCHKSIPEGG--KVIVVESV 120 (184)
Q Consensus 79 ~~-D~i~~~~~l~~~~~~~-----~~~~l~~~~~~L~pgG--~l~i~~~~ 120 (184)
.. |+|++..+ ++.+.+. ...+|+.+.++|+||| .+++....
T Consensus 139 ~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 139 ERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 33 99999877 4433221 1247999999999999 99986543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-15 Score=107.10 Aligned_cols=99 Identities=18% Similarity=0.146 Sum_probs=79.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc---CC-----CC-
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS---VP-----NG- 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~---~~-----~~- 80 (184)
..+..+|||||||+|..+..+++..| ..+++++|+ +.+++.++++ ++++++.+|+.+. .. ..
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 34578999999999999999999887 789999999 8888888663 4699999998652 21 33
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
|+|++.... .....+++++.++|+|||++++.+....
T Consensus 142 D~v~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 142 DLIYIDADK-----ANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred cEEEECCCH-----HHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 999975542 2334789999999999999999776653
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-14 Score=106.01 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=84.6
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~ 76 (184)
+..++..+++.++ ..+..+|||+|||+|.++..+++. |..+++++|+ +.+++.|+++ ++++++++|+.++
T Consensus 108 te~lv~~~l~~~~-~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~ 185 (284)
T 1nv8_A 108 TEELVELALELIR-KYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP 185 (284)
T ss_dssp HHHHHHHHHHHHH-HHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG
T ss_pred HHHHHHHHHHHhc-ccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh
Confidence 3456667777665 446679999999999999999999 8999999999 8999888764 2499999999884
Q ss_pred C-CCC---CEEEechhhh-----------cCChH------HHHHHHHHHH-hhCCCCcEEEE
Q 030025 77 V-PNG---DAILIKWILH-----------DWSDE------HCLKLLKNCH-KSIPEGGKVIV 116 (184)
Q Consensus 77 ~-~~~---D~i~~~~~l~-----------~~~~~------~~~~~l~~~~-~~L~pgG~l~i 116 (184)
. +.. |+|+++-... |-+.. +...+++++. +.|+|||++++
T Consensus 186 ~~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 186 FKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp GGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred cccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 3 346 9999962111 22211 1126899999 99999999998
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.52 E-value=8.2e-15 Score=101.58 Aligned_cols=112 Identities=9% Similarity=0.010 Sum_probs=83.6
Q ss_pred cHHhHHHHHHHhcC-CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----C-CceEEEcccCcc-
Q 030025 5 TTLVLQKILEAYKG-FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----P-GVKHVGGDMFQS- 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~-~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~-~i~~~~~d~~~~- 76 (184)
...+.+.+++.+.. +++..+|||+|||+|.++..+++..+. ++++|. +.+++.++++ . +++++.+|+.+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 101 (171)
T 1ws6_A 24 PVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFL 101 (171)
T ss_dssp CHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHH
Confidence 44556666666651 236789999999999999999998654 999999 8899888764 2 799999998762
Q ss_pred --CC----CCCEEEechhhhcCChHHHHHHHHHHH--hhCCCCcEEEEEeeecC
Q 030025 77 --VP----NGDAILIKWILHDWSDEHCLKLLKNCH--KSIPEGGKVIVVESVLP 122 (184)
Q Consensus 77 --~~----~~D~i~~~~~l~~~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~~~ 122 (184)
.+ ..|+|++..+++ -..+ .+++.+. ++|+|||.+++......
T Consensus 102 ~~~~~~~~~~D~i~~~~~~~-~~~~---~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 102 PEAKAQGERFTVAFMAPPYA-MDLA---ALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp HHHHHTTCCEEEEEECCCTT-SCTT---HHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred HhhhccCCceEEEEECCCCc-hhHH---HHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 11 239999987776 2222 4566666 99999999999776543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.9e-15 Score=106.09 Aligned_cols=108 Identities=8% Similarity=0.086 Sum_probs=82.0
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC--------CCceEEEcccCc--
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQ-- 75 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~-- 75 (184)
+...++...+ ..+..+|||||||+|..+..+++..+ ..+++++|. +.+++.|+++ ++++++.+|+.+
T Consensus 44 ~l~~l~~~~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l 122 (221)
T 3dr5_A 44 LLTTLAATTN-GNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM 122 (221)
T ss_dssp HHHHHHHHSC-CTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG
T ss_pred HHHHHHHhhC-CCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH
Confidence 3444444443 33445999999999999999999864 789999999 8898888663 369999999876
Q ss_pred -cC-CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 76 -SV-PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 76 -~~-~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.+ +.. |+|++..... ....+++++.++|+|||.+++.+..+
T Consensus 123 ~~~~~~~fD~V~~d~~~~-----~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 123 SRLANDSYQLVFGQVSPM-----DLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp GGSCTTCEEEEEECCCTT-----THHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred HHhcCCCcCeEEEcCcHH-----HHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 23 233 9999865433 22468999999999999999966554
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-14 Score=105.09 Aligned_cols=104 Identities=15% Similarity=0.009 Sum_probs=75.9
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC--C------CceEE--EcccCc-cCC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY--P------GVKHV--GGDMFQ-SVP 78 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~--~------~i~~~--~~d~~~-~~~ 78 (184)
..+.+... +.+..+|||+|||+|.++..++++ .+++++|++.|...+++. + ++.++ ++|+.+ + +
T Consensus 72 ~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~ 146 (276)
T 2wa2_A 72 AWIDERGG-VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME-P 146 (276)
T ss_dssp HHHHHTTS-CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-C
T ss_pred HHHHHcCC-CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-C
Confidence 34444433 667889999999999999999987 589999994465444332 2 78999 999887 4 3
Q ss_pred CC-CEEEechhhhcCChH----H-HHHHHHHHHhhCCCCc--EEEEEee
Q 030025 79 NG-DAILIKWILHDWSDE----H-CLKLLKNCHKSIPEGG--KVIVVES 119 (184)
Q Consensus 79 ~~-D~i~~~~~l~~~~~~----~-~~~~l~~~~~~L~pgG--~l~i~~~ 119 (184)
.. |+|++..+ ++.+.+ . ...+|+.+.++||||| .+++...
T Consensus 147 ~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 147 FQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 33 99999877 443322 1 1247999999999999 9988554
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-14 Score=104.27 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=84.8
Q ss_pred HHhHHHHHHHhc-CCCCCCeEEEecCCcChHHHHHHhhCC------CCeEEEeec-hhHhhhCCCC-----------CCc
Q 030025 6 TLVLQKILEAYK-GFEHIKQLVDVGGSLGNTLKAITSKYP------HIKGINFDL-PHVIQHSPEY-----------PGV 66 (184)
Q Consensus 6 ~~~~~~l~~~~~-~~~~~~~ilDiG~G~G~~~~~l~~~~~------~~~~~~~D~-~~~~~~a~~~-----------~~i 66 (184)
..+...+++.+. ...+..+|||||||+|..+..+++..+ ..+++++|. +.+++.++++ +++
T Consensus 68 p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v 147 (227)
T 1r18_A 68 PHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL 147 (227)
T ss_dssp HHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred hHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCce
Confidence 345566777773 266788999999999999999998754 369999999 8888887653 479
Q ss_pred eEEEcccCccCCC--C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 67 KHVGGDMFQSVPN--G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 67 ~~~~~d~~~~~~~--~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.+..+|..+.++. . |+|++..+++++. +++.+.|||||++++.-.
T Consensus 148 ~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 148 LIVEGDGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp EEEESCGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred EEEECCcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 9999999875443 3 9999999998764 568899999999999653
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-14 Score=103.31 Aligned_cols=106 Identities=15% Similarity=0.151 Sum_probs=81.6
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc---C
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS---V 77 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~---~ 77 (184)
..+...+. ..+..+|||||||+|..+..+++..+ ..+++++|. +.+++.++++ +++.++.+|+.+. .
T Consensus 50 ~~l~~l~~-~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 128 (239)
T 2hnk_A 50 QFLNILTK-ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVL 128 (239)
T ss_dssp HHHHHHHH-HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred HHHHHHHH-hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHH
Confidence 33333333 45678999999999999999999986 689999999 8888887764 3489999998651 1
Q ss_pred ---------------C-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 78 ---------------P-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 78 ---------------~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+ .. |+|++..... ....+++++.+.|+|||++++.+...
T Consensus 129 ~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 129 IDSKSAPSWASDFAFGPSSIDLFFLDADKE-----NYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp HHCSSCCGGGTTTCCSTTCEEEEEECSCGG-----GHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred HhhcccccccccccCCCCCcCEEEEeCCHH-----HHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 1 33 9999875443 23478999999999999999976544
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.50 E-value=7.5e-15 Score=104.97 Aligned_cols=111 Identities=10% Similarity=0.021 Sum_probs=82.8
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCc-c
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQ-S 76 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~-~ 76 (184)
.+...+++.+....+..+|||+|||+|.++..++++. ..+++++|+ +.+++.|+++ ++++++.+|+.+ .
T Consensus 39 ~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 117 (201)
T 2ift_A 39 RVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL 117 (201)
T ss_dssp HHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT
T ss_pred HHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHH
Confidence 4455566655411256899999999999999877764 358999999 8999988763 478999999876 2
Q ss_pred C----CC-CCEEEechhhhcCChHHHHHHHHHH--HhhCCCCcEEEEEeeec
Q 030025 77 V----PN-GDAILIKWILHDWSDEHCLKLLKNC--HKSIPEGGKVIVVESVL 121 (184)
Q Consensus 77 ~----~~-~D~i~~~~~l~~~~~~~~~~~l~~~--~~~L~pgG~l~i~~~~~ 121 (184)
. .. .|+|++...++ ... ...+++.+ .++|+|||.+++.....
T Consensus 118 ~~~~~~~~fD~I~~~~~~~-~~~--~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 118 KQPQNQPHFDVVFLDPPFH-FNL--AEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp TSCCSSCCEEEEEECCCSS-SCH--HHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred HhhccCCCCCEEEECCCCC-Ccc--HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 1 24 59999987754 333 34788888 66899999999876544
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=95.92 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=78.4
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC---------CeEEEeechhHhhhCCCCCCceEE-EcccCc-c-
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH---------IKGINFDLPHVIQHSPEYPGVKHV-GGDMFQ-S- 76 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~---------~~~~~~D~~~~~~~a~~~~~i~~~-~~d~~~-~- 76 (184)
..++...+..+.+..+|||+|||+|.++..++++.+. .+++++|++.+. ..+++++. .+|+.+ +
T Consensus 10 l~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~ 85 (196)
T 2nyu_A 10 LLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRT 85 (196)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHH
T ss_pred HHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHH
Confidence 3445555654577899999999999999999999764 799999994431 23678999 999876 2
Q ss_pred -------CCC-C-CEEEechhhhcC----ChHH-----HHHHHHHHHhhCCCCcEEEEEee
Q 030025 77 -------VPN-G-DAILIKWILHDW----SDEH-----CLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 77 -------~~~-~-D~i~~~~~l~~~----~~~~-----~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
++. . |+|++..+++.. .+.. ...+++++.++|+|||++++...
T Consensus 86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 222 3 999986554432 2221 13789999999999999999764
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-14 Score=109.84 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=80.8
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCc-cCC-
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ-SVP- 78 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~-~~~- 78 (184)
..+.+.+... ..+..+|||||||+|.++..+++. +..+++++|.+.+++.|++. ++++++.+|+.+ +++
T Consensus 26 y~~ai~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 103 (328)
T 1g6q_1 26 YRNAIIQNKD-LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPF 103 (328)
T ss_dssp HHHHHHHHHH-HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS
T ss_pred HHHHHHhhHh-hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCC
Confidence 3445555555 567889999999999999988886 44699999996577776653 469999999987 555
Q ss_pred CC-CEEEechhhhcCC-hHHHHHHHHHHHhhCCCCcEEEE
Q 030025 79 NG-DAILIKWILHDWS-DEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 79 ~~-D~i~~~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.. |+|++..+.+++. ......+++.+.++|+|||.++.
T Consensus 104 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred CcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 33 9999976555432 22234789999999999999974
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-14 Score=106.41 Aligned_cols=94 Identities=16% Similarity=0.370 Sum_probs=73.1
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC--------------CCCceEEEcccCcc----CCCC
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE--------------YPGVKHVGGDMFQS----VPNG 80 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~--------------~~~i~~~~~d~~~~----~~~~ 80 (184)
++..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .+++.++.+|+.+. ++..
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 3567999999999999999999999899999999 888876632 35799999999862 3333
Q ss_pred --CEEEechhhhcCChHHH-----------HHHHHHHHhhCCCCcEEEEEe
Q 030025 81 --DAILIKWILHDWSDEHC-----------LKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 81 --D~i~~~~~l~~~~~~~~-----------~~~l~~~~~~L~pgG~l~i~~ 118 (184)
|.|++.. +++.. ..+++++.++|+|||.|++..
T Consensus 128 ~~d~v~~~~-----p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFCF-----PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEES-----CCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEEC-----CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 7776432 32210 268999999999999999953
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=105.12 Aligned_cols=110 Identities=13% Similarity=0.120 Sum_probs=82.4
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c-CC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S-VP 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~-~~ 78 (184)
...+...+. ..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .++.++.+|+.+ + .+
T Consensus 107 s~l~~~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~ 185 (315)
T 1ixk_A 107 SMYPPVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELN 185 (315)
T ss_dssp HHHHHHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGC
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccccc
Confidence 344455566 77889999999999999999999864 489999999 8888887764 478999999987 3 23
Q ss_pred CC-CEEEec------hhhhcCCh-------H-------HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 79 NG-DAILIK------WILHDWSD-------E-------HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 79 ~~-D~i~~~------~~l~~~~~-------~-------~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.. |+|++. .++++.++ . ....+++++.+.|||||++++++-
T Consensus 186 ~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 186 VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 33 999883 23332221 1 114789999999999999999664
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-13 Score=102.28 Aligned_cols=108 Identities=12% Similarity=0.056 Sum_probs=78.6
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec--hhHhhhCCCC----------------CCce
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL--PHVIQHSPEY----------------PGVK 67 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~--~~~~~~a~~~----------------~~i~ 67 (184)
..+.+.+.+... ..+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ +++.
T Consensus 65 ~~l~~~l~~~~~-~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~ 142 (281)
T 3bzb_A 65 RALADTLCWQPE-LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPK 142 (281)
T ss_dssp HHHHHHHHHCGG-GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCE
T ss_pred HHHHHHHHhcch-hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeE
Confidence 345555665554 5567899999999999999888763 348999998 4677665432 2677
Q ss_pred EEEcccCc---cC-----CCC-CEEEechhhhcCChHHHHHHHHHHHhhCC---C--CcEEEEE
Q 030025 68 HVGGDMFQ---SV-----PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIP---E--GGKVIVV 117 (184)
Q Consensus 68 ~~~~d~~~---~~-----~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~---p--gG~l~i~ 117 (184)
+...|..+ .+ ... |+|++..+++|.++. ..+++.+.++|+ | ||++++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~--~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 143 VVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAH--DALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp EEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGH--HHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred EEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHH--HHHHHHHHHHhcccCCCCCCEEEEE
Confidence 77555432 11 233 999999999986554 478999999999 9 9987773
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-14 Score=107.14 Aligned_cols=98 Identities=18% Similarity=0.342 Sum_probs=77.8
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc---cCC-CC-CEEEechhh
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ---SVP-NG-DAILIKWIL 89 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~---~~~-~~-D~i~~~~~l 89 (184)
..+|||||||+|.++..+++.+|..+++++|+ +.+++.|+++ ++++++.+|..+ ..+ .. |+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 45999999999999999999999999999999 9999988763 579999999876 233 23 999986543
Q ss_pred hcCChHH--HHHHHHHHHhhCCCCcEEEEEee
Q 030025 90 HDWSDEH--CLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 90 ~~~~~~~--~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+...... ..++++++++.|+|||++++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 3211111 13789999999999999998664
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=100.73 Aligned_cols=101 Identities=18% Similarity=0.218 Sum_probs=81.7
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccC-CC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSV-PN 79 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~-~~ 79 (184)
...++..+. ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.++++ +++++..+|+.+.. +.
T Consensus 80 ~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 156 (248)
T 2yvl_A 80 SFYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE 156 (248)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCC
Confidence 345666666 778899999999999999999998 679999999 8888887653 57899999998844 43
Q ss_pred -C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 80 -G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 80 -~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. |+|++. .+++ ..+++++.+.|+|||++++..+
T Consensus 157 ~~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 157 GIFHAAFVD-----VREP--WHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp TCBSEEEEC-----SSCG--GGGHHHHHHHBCTTCEEEEEES
T ss_pred CcccEEEEC-----CcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence 3 999973 3333 3679999999999999999764
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-14 Score=101.84 Aligned_cols=97 Identities=13% Similarity=0.172 Sum_probs=77.6
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc--cCCC-CCEEEech
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ--SVPN-GDAILIKW 87 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~--~~~~-~D~i~~~~ 87 (184)
.+..+|||||||+|..+..+++..+ ..+++++|+ +.+++.++++ ++++++.+|..+ +... .|+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 3568999999999999999999887 789999999 8899888764 368999999875 2222 59998864
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
... ....+++++.++|+|||.+++.+...
T Consensus 135 ~~~-----~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 135 DVF-----NGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp TTS-----CHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred Chh-----hhHHHHHHHHHhcCCCeEEEEECccc
Confidence 321 23478999999999999999866544
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.3e-16 Score=112.38 Aligned_cols=145 Identities=12% Similarity=0.019 Sum_probs=101.1
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPN 79 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~ 79 (184)
...+...+....+..+|||+|||+|..+..+++.. .+++++|+ +.+++.++++ ++++++.+|+.+ +...
T Consensus 66 ~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 143 (241)
T 3gdh_A 66 AEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFL 143 (241)
T ss_dssp HHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGC
T ss_pred HHHHHHHhhhccCCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccC
Confidence 44455544323367899999999999999999874 79999999 8899888764 479999999987 4223
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
. |+|++..++++..+.. ..+.+++++|+|||.+++......... ... .-....+.+++.+
T Consensus 144 ~~D~v~~~~~~~~~~~~~--~~~~~~~~~L~pgG~~i~~~~~~~~~~---------~~~--------~lp~~~~~~~~~~ 204 (241)
T 3gdh_A 144 KADVVFLSPPWGGPDYAT--AETFDIRTMMSPDGFEIFRLSKKITNN---------IVY--------FLPRNADIDQVAS 204 (241)
T ss_dssp CCSEEEECCCCSSGGGGG--SSSBCTTTSCSSCHHHHHHHHHHHCSC---------EEE--------EEETTBCHHHHHH
T ss_pred CCCEEEECCCcCCcchhh--hHHHHHHhhcCCcceeHHHHHHhhCCc---------eEE--------ECCCCCCHHHHHH
Confidence 3 9999999999876553 367789999999999666332110000 000 0012236778888
Q ss_pred HHHHcCCceeEEEeec
Q 030025 159 LATEAGFSGIRFVCFF 174 (184)
Q Consensus 159 ~l~~aGf~~i~~~~~~ 174 (184)
+++..|...++.....
T Consensus 205 ~l~~~g~~~i~~~~~~ 220 (241)
T 3gdh_A 205 LAGPGGQVEIEQNFLN 220 (241)
T ss_dssp TTCTTCCEEEEEEEET
T ss_pred HhccCCCEEEEehhhc
Confidence 8888776666554443
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-14 Score=104.36 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=78.4
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc--c-C------CCC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ--S-V------PNG 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~--~-~------~~~ 80 (184)
..+..+|||||||+|..+..+++..| ..+++++|. +.+++.|+++ ++++++.+|+.+ + . ...
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 34578999999999999999999987 789999999 8898888763 468999999875 2 2 233
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
|+|++..... ....+++++.++|+|||.+++.+..+
T Consensus 157 fD~V~~d~~~~-----~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 157 YDFIFVDADKD-----NYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp BSEEEECSCST-----THHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEEcCchH-----HHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 9999865422 23478999999999999999866544
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.4e-14 Score=101.04 Aligned_cols=106 Identities=17% Similarity=0.138 Sum_probs=84.1
Q ss_pred HhHHHHHHHhc-CCCCCCeEEEecCCcChHHHHHHhhC-----CCCeEEEeec-hhHhhhCCCC-----------CCceE
Q 030025 7 LVLQKILEAYK-GFEHIKQLVDVGGSLGNTLKAITSKY-----PHIKGINFDL-PHVIQHSPEY-----------PGVKH 68 (184)
Q Consensus 7 ~~~~~l~~~~~-~~~~~~~ilDiG~G~G~~~~~l~~~~-----~~~~~~~~D~-~~~~~~a~~~-----------~~i~~ 68 (184)
.+...+++.+. ...+..+|||||||+|..+..+++.. |..+++++|. +.+++.++++ +++.+
T Consensus 65 ~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~ 144 (227)
T 2pbf_A 65 HMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKI 144 (227)
T ss_dssp HHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEE
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEE
Confidence 34456666662 26678899999999999999999986 5679999999 8888887653 47999
Q ss_pred EEcccCccC-----C-C-CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 69 VGGDMFQSV-----P-N-GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 69 ~~~d~~~~~-----~-~-~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+.+|..+.. + . .|+|++..+++++ ++++.+.|+|||++++.-..
T Consensus 145 ~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 145 IHKNIYQVNEEEKKELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp EECCGGGCCHHHHHHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEEE
T ss_pred EECChHhcccccCccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEcc
Confidence 999998732 2 2 3999999998865 46788999999999997653
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.1e-14 Score=100.27 Aligned_cols=112 Identities=11% Similarity=0.027 Sum_probs=83.0
Q ss_pred cHHhHHHHHHHhcCCC-CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-
Q 030025 5 TTLVLQKILEAYKGFE-HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ- 75 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~-~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~- 75 (184)
...+...+++.+. .. +..+|||+|||+|.++..++++.. .+++++|+ +.|++.++++ ++++++.+|+.+
T Consensus 38 ~~~~~~~l~~~l~-~~~~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~ 115 (202)
T 2fpo_A 38 TDRVRETLFNWLA-PVIVDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF 115 (202)
T ss_dssp CHHHHHHHHHHHH-HHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH
T ss_pred HHHHHHHHHHHHH-hhcCCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH
Confidence 3445556666655 32 568999999999999998887742 48999999 8999988764 479999999876
Q ss_pred -cCC-CC-CEEEechhhhcCChHHHHHHHHHHHh--hCCCCcEEEEEeeec
Q 030025 76 -SVP-NG-DAILIKWILHDWSDEHCLKLLKNCHK--SIPEGGKVIVVESVL 121 (184)
Q Consensus 76 -~~~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~--~L~pgG~l~i~~~~~ 121 (184)
+.+ .. |+|++...++ .... ..+++.+.+ +|+|||.+++.....
T Consensus 116 ~~~~~~~fD~V~~~~p~~-~~~~--~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 116 LAQKGTPHNIVFVDPPFR-RGLL--EETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp HSSCCCCEEEEEECCSSS-TTTH--HHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred HhhcCCCCCEEEECCCCC-CCcH--HHHHHHHHhcCccCCCcEEEEEECCC
Confidence 332 23 9999987744 3332 367888866 599999999876543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=98.92 Aligned_cols=104 Identities=19% Similarity=0.126 Sum_probs=81.6
Q ss_pred hHHHHHHHhc-CCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC-----------CCceEEEccc
Q 030025 8 VLQKILEAYK-GFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY-----------PGVKHVGGDM 73 (184)
Q Consensus 8 ~~~~l~~~~~-~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-----------~~i~~~~~d~ 73 (184)
....+++.+. ...+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .++.+..+|.
T Consensus 63 ~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 142 (226)
T 1i1n_A 63 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 142 (226)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCc
Confidence 4445666653 25677899999999999999999884 5679999999 8888887653 3799999998
Q ss_pred Ccc-CCC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 74 FQS-VPN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 74 ~~~-~~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
... .+. . |+|++..+++++ ++++.+.|||||++++...
T Consensus 143 ~~~~~~~~~fD~i~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 143 RMGYAEEAPYDAIHVGAAAPVV--------PQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp GGCCGGGCCEEEEEECSBBSSC--------CHHHHHTEEEEEEEEEEES
T ss_pred ccCcccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEe
Confidence 763 222 3 999999888765 4578899999999999754
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-13 Score=102.41 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=70.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-----hhHhhhCC--CC--CCceEEEc-ccCc-cCCCCCEEEech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-----PHVIQHSP--EY--PGVKHVGG-DMFQ-SVPNGDAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-----~~~~~~a~--~~--~~i~~~~~-d~~~-~~~~~D~i~~~~ 87 (184)
+++..+|||+|||+|.++..++++ .+++++|. +.+++.++ .. +++.++++ |+.+ +....|+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 567789999999999999999987 47899997 43333322 12 57899999 8876 333349999976
Q ss_pred hhh---cCChHH-HHHHHHHHHhhCCCCcEEEEEe
Q 030025 88 ILH---DWSDEH-CLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 88 ~l~---~~~~~~-~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+++ +..+.. ...+|+.+.++|||||.+++..
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 653 222222 1257999999999999998843
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.45 E-value=9.5e-14 Score=104.36 Aligned_cols=107 Identities=19% Similarity=0.299 Sum_probs=82.0
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ- 75 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~- 75 (184)
+..+++.+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+
T Consensus 13 d~~i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~ 89 (285)
T 1zq9_A 13 NPLIINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 89 (285)
T ss_dssp CHHHHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred CHHHHHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence 5567889999988 8888999999999999999999984 58999999 8888877653 478999999987
Q ss_pred cCCCCCEEEechhhhcCChHHHHHHHH--------------HH--HhhCCCCcEEE
Q 030025 76 SVPNGDAILIKWILHDWSDEHCLKLLK--------------NC--HKSIPEGGKVI 115 (184)
Q Consensus 76 ~~~~~D~i~~~~~l~~~~~~~~~~~l~--------------~~--~~~L~pgG~l~ 115 (184)
+++..|+|+++...+ +..+....+++ ++ +++++|||+++
T Consensus 90 ~~~~fD~vv~nlpy~-~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 90 DLPFFDTCVANLPYQ-ISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CCCCCSEEEEECCGG-GHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred cchhhcEEEEecCcc-cchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 666559999865443 33333333432 22 36899999764
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.6e-13 Score=102.43 Aligned_cols=95 Identities=8% Similarity=-0.047 Sum_probs=77.3
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCC----CC-CEEEechh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVP----NG-DAILIKWI 88 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~----~~-D~i~~~~~ 88 (184)
+..+|||+| |+|.++..+++..+..+++++|+ +.+++.|+++ .+++++.+|+.+.++ .. |+|++..+
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 568999999 99999999999887789999999 9999988764 379999999987433 23 99999876
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
++... ...+++++.+.|+|||++++.+.
T Consensus 251 ~~~~~---~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 251 ETLEA---IRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp SSHHH---HHHHHHHHHHTBCSTTCEEEEEE
T ss_pred CchHH---HHHHHHHHHHHcccCCeEEEEEE
Confidence 65432 35899999999999996544443
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.4e-14 Score=101.62 Aligned_cols=98 Identities=16% Similarity=0.199 Sum_probs=78.0
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc---cC--C---CC-C
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ---SV--P---NG-D 81 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~---~~--~---~~-D 81 (184)
.+..+|||||||+|..+..+++..+ ..+++++|. +.+++.|+++ ++++++.+|+.+ .+ + .. |
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 3568999999999999999999876 689999999 8888888753 468999999754 11 1 33 9
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
+|++.... +....+++++.++|+|||++++.+..+.
T Consensus 151 ~V~~d~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 151 LIFIDADK-----RNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp EEEECSCG-----GGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred EEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 99986542 2335789999999999999999775543
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.1e-14 Score=101.19 Aligned_cols=98 Identities=13% Similarity=0.218 Sum_probs=78.5
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc---CC-----CC-
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS---VP-----NG- 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~---~~-----~~- 80 (184)
..+..+|||||||+|..+..+++..+ ..+++++|. +.+++.++++ ++++++.+|+.+. ++ ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 45678999999999999999999876 789999999 8888887653 5799999998652 21 33
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
|+|++.... .....+++++.++|+|||.+++.+...
T Consensus 147 D~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDADK-----ENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEEECSCS-----TTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cEEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 999986542 223478999999999999999977554
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-13 Score=103.70 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=81.8
Q ss_pred HHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccCc
Q 030025 9 LQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMFQ 75 (184)
Q Consensus 9 ~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~~ 75 (184)
..+++.+++. .+++.+|||||||+|..+..+++..+..+++++|+ +.+++.++++ ++++++.+|..+
T Consensus 64 Y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~ 143 (283)
T 2i7c_A 64 YHEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK 143 (283)
T ss_dssp HHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH
T ss_pred HHHHHHHHHHhcCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHH
Confidence 3445554431 34678999999999999999998877889999999 8888877542 578999999876
Q ss_pred c---CCCC-CEEEechhhhcCChHHH--HHHHHHHHhhCCCCcEEEEEe
Q 030025 76 S---VPNG-DAILIKWILHDWSDEHC--LKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 76 ~---~~~~-D~i~~~~~l~~~~~~~~--~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. .+.. |+|++....++.+.... .++++.+++.|+|||.+++..
T Consensus 144 ~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 144 FLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp HHHHCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHhCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 2 2333 99998654332222211 478999999999999999853
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-13 Score=105.75 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=81.1
Q ss_pred HHHHHHHhc--CCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccCc
Q 030025 9 LQKILEAYK--GFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMFQ 75 (184)
Q Consensus 9 ~~~l~~~~~--~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~~ 75 (184)
..+++.+++ ..++..+|||||||+|..+..+++..+..+++++|+ +.+++.|+++ ++++++.+|+.+
T Consensus 106 y~e~L~~l~l~~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~ 185 (334)
T 1xj5_A 106 YQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVA 185 (334)
T ss_dssp HHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHH
T ss_pred HHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHH
Confidence 344555443 134678999999999999999999877889999999 8898887653 579999999876
Q ss_pred c---CC-CC-CEEEechhhhcCChH--HHHHHHHHHHhhCCCCcEEEEE
Q 030025 76 S---VP-NG-DAILIKWILHDWSDE--HCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 76 ~---~~-~~-D~i~~~~~l~~~~~~--~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
. .+ .. |+|++...-..-..+ ....++++++++|+|||++++.
T Consensus 186 ~l~~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 186 FLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp HHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHhccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 2 22 23 999985442111111 1247999999999999999985
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=101.78 Aligned_cols=134 Identities=13% Similarity=0.087 Sum_probs=99.4
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ- 75 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~- 75 (184)
...++..++... +.+..+|||+|||+|.++..++...+..+++++|+ +.|++.|+++ ++++++++|+.+
T Consensus 203 ~~~la~~l~~~~--~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~ 280 (373)
T 3tm4_A 203 KASIANAMIELA--ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL 280 (373)
T ss_dssp CHHHHHHHHHHH--TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG
T ss_pred cHHHHHHHHHhh--cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence 445566666655 57789999999999999999999877669999999 9999988764 378999999998
Q ss_pred cCC-CC-CEEEechhhhcCC------hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCC
Q 030025 76 SVP-NG-DAILIKWILHDWS------DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPG 147 (184)
Q Consensus 76 ~~~-~~-D~i~~~~~l~~~~------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
+.+ .. |+|+++-.++... ..-...+++.+++.| ||.+++...
T Consensus 281 ~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~---------------------------- 330 (373)
T 3tm4_A 281 SQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT---------------------------- 330 (373)
T ss_dssp GGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES----------------------------
T ss_pred CcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC----------------------------
Confidence 544 33 9999976654321 111247889999988 555554321
Q ss_pred ccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 148 GKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 148 ~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
+.+.+.+.+++.||+..+.....
T Consensus 331 ----~~~~~~~~~~~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 331 ----EKKAIEEAIAENGFEIIHHRVIG 353 (373)
T ss_dssp ----CHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHcCCEEEEEEEEE
Confidence 35667788999999988876664
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-13 Score=101.42 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=80.6
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc-CCCC-CEEEechhh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS-VPNG-DAILIKWIL 89 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~-~~~~-D~i~~~~~l 89 (184)
+.+..+|||+|||+|.++..+++..+..+++++|. +.+++.++++ .++.++.+|+.+. .... |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 67788999999999999999999987889999999 8999888763 5789999999874 3223 999987654
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
....+++++.+.|+|||.+++.....
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 12367999999999999999987654
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-13 Score=103.44 Aligned_cols=111 Identities=15% Similarity=0.201 Sum_probs=80.3
Q ss_pred hHHHHHHHhc--CCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccC
Q 030025 8 VLQKILEAYK--GFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMF 74 (184)
Q Consensus 8 ~~~~l~~~~~--~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~ 74 (184)
...+++.+++ ..++..+|||||||+|..+..+++..+..+++++|+ +.+++.|+++ ++++++.+|..
T Consensus 80 ~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~ 159 (304)
T 2o07_A 80 SYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGF 159 (304)
T ss_dssp HHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHH
Confidence 3445555443 134678999999999999999999877789999999 8888877652 57999999987
Q ss_pred c--cC-CCC-CEEEechhhhcCChH--HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 75 Q--SV-PNG-DAILIKWILHDWSDE--HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 75 ~--~~-~~~-D~i~~~~~l~~~~~~--~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+ +. +.. |+|++....+.-+.. ...+++++++++|+|||.+++..
T Consensus 160 ~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 160 EFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp HHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhhCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 6 22 233 999986544321111 12468999999999999999855
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-13 Score=100.13 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=78.0
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc--c-C------CCC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ--S-V------PNG 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~--~-~------~~~ 80 (184)
..+..+|||||||+|..+..+++..| ..+++++|. +.+++.|+++ ++++++.+|..+ + + ...
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 44578999999999999999999976 789999999 8888888653 468999999875 2 2 233
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
|+|++.... .....+++++.++|+|||.+++.+..+
T Consensus 148 fD~I~~d~~~-----~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 148 YDFGFVDADK-----PNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred cCEEEECCch-----HHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 999986432 234578999999999999998866443
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5e-13 Score=96.84 Aligned_cols=96 Identities=11% Similarity=0.019 Sum_probs=80.5
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCCC-CEEEechhhh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPNG-DAILIKWILH 90 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~~-D~i~~~~~l~ 90 (184)
.+++.+|||||||+|-++..+. +..+++++|+ +.+++.+++. .+..+...|... +.+.. |++++.-++|
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence 4568899999999999998877 7889999999 9999988764 567889999987 55544 9999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
++++.+....+ ++.+.|+|+|.++-..
T Consensus 180 ~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 180 LLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 99877665666 8899999998877655
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-14 Score=114.08 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=81.1
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc---cCCC--CCEEEec
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ---SVPN--GDAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~---~~~~--~D~i~~~ 86 (184)
++++.+|||||||+|.++..|+++ +.+++|+|. +.+++.|+.+ .+++|.++++++ ..+. .|+|+|.
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~ 141 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL 141 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence 346789999999999999999997 679999999 8888877653 358999999876 2332 3999999
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.++||+++++....+..+.+.|+++|+.++.....
T Consensus 142 e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 142 SVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred cchhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 99999988765555667788888888877766543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.40 E-value=9.6e-13 Score=93.66 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=68.4
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCccCCCC-CEEEechhhhcCChH
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQSVPNG-DAILIKWILHDWSDE 95 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~~~~~~-D~i~~~~~l~~~~~~ 95 (184)
..+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ .+++++.+|+.+. +.. |+|+++.++|++.+.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~-~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEI-SGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGC-CCCEEEEEECCCC------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHC-CCCeeEEEECCCchhccCc
Confidence 456789999999999999999887 4457999999 8999888765 4899999999872 334 999999999998754
Q ss_pred HHHHHHHHHHhhC
Q 030025 96 HCLKLLKNCHKSI 108 (184)
Q Consensus 96 ~~~~~l~~~~~~L 108 (184)
....+++++.+.+
T Consensus 127 ~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 127 SDRAFIDKAFETS 139 (200)
T ss_dssp -CHHHHHHHHHHE
T ss_pred hhHHHHHHHHHhc
Confidence 4457899999998
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-12 Score=98.54 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=78.9
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------C--CceEEEcccCccC--
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------P--GVKHVGGDMFQSV-- 77 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~--~i~~~~~d~~~~~-- 77 (184)
...+.+.+....+..+|||+|||+|.++..+++.. .+++++|+ +.+++.++++ . ++.++.+|+.+..
T Consensus 141 ~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~ 218 (332)
T 2igt_A 141 WEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQR 218 (332)
T ss_dssp HHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHH
Confidence 33444444212456799999999999999999864 49999999 8899888764 2 4899999998721
Q ss_pred ----CC-CCEEEechhhhcC--------ChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 78 ----PN-GDAILIKWILHDW--------SDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 78 ----~~-~D~i~~~~~l~~~--------~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.. .|+|++.-..... ..+....+++++.++|+|||.+++....
T Consensus 219 ~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 219 EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred HHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 22 3999984331110 1223458999999999999998876543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-13 Score=103.04 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=77.7
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC-----------CCCceEEEcccCcc---CCCC-CEE
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE-----------YPGVKHVGGDMFQS---VPNG-DAI 83 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~---~~~~-D~i 83 (184)
++..+|||||||+|..+..+++..+..+++++|+ +.+++.|++ .++++++.+|+.+. .+.. |+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4568999999999999999999877889999999 888887754 25799999998762 2233 999
Q ss_pred Eechhhhc-C-Ch-HH--HHHHHHHHHhhCCCCcEEEEEe
Q 030025 84 LIKWILHD-W-SD-EH--CLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 84 ~~~~~l~~-~-~~-~~--~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
++....+. . .+ .. ..++++++++.|+|||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 99765543 0 11 11 2478999999999999999864
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.38 E-value=7e-12 Score=89.54 Aligned_cols=133 Identities=12% Similarity=0.007 Sum_probs=92.6
Q ss_pred HhHHHHHHHhc--CCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----C-CceEEEcccCccCC
Q 030025 7 LVLQKILEAYK--GFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----P-GVKHVGGDMFQSVP 78 (184)
Q Consensus 7 ~~~~~l~~~~~--~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~-~i~~~~~d~~~~~~ 78 (184)
.+...++..+. ...+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ . +++++.+|+.+..+
T Consensus 33 ~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 111 (207)
T 1wy7_A 33 NAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNS 111 (207)
T ss_dssp HHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCC
T ss_pred HHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCC
Confidence 34444444332 13467899999999999999998873 348999999 8898887764 1 78999999987322
Q ss_pred CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 79 NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 79 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
..|+|++...+++........+++++.+.+ ||.+++ .. +. ..+.+.+.+
T Consensus 112 ~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~-~~--~~--------------------------~~~~~~~~~ 160 (207)
T 1wy7_A 112 RVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSI-HL--AK--------------------------PEVRRFIEK 160 (207)
T ss_dssp CCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEE-EE--CC--------------------------HHHHHHHHH
T ss_pred CCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEE-Ee--CC--------------------------cCCHHHHHH
Confidence 349999998888775433357899999998 554433 21 01 012455667
Q ss_pred HHHHcCCceeEEE
Q 030025 159 LATEAGFSGIRFV 171 (184)
Q Consensus 159 ~l~~aGf~~i~~~ 171 (184)
.+++.||+...+.
T Consensus 161 ~l~~~g~~~~~~~ 173 (207)
T 1wy7_A 161 FSWEHGFVVTHRL 173 (207)
T ss_dssp HHHHTTEEEEEEE
T ss_pred HHHHCCCeEEEEE
Confidence 8889998766544
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.5e-13 Score=100.48 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=74.7
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC----------------CCCceEEEcccCcc--CCCC
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE----------------YPGVKHVGGDMFQS--VPNG 80 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----------------~~~i~~~~~d~~~~--~~~~ 80 (184)
++..+|||||||+|..+..+++. +..+++++|+ +.+++.|++ .++++++.+|..+. .+..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 46689999999999999999998 7789999999 888877652 35789999998652 1333
Q ss_pred -CEEEechhhhcCChHH--HHHHHHHHHhhCCCCcEEEEEe
Q 030025 81 -DAILIKWILHDWSDEH--CLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~--~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
|+|++....+.-+... ..++++++++.|+|||.+++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999865532211111 1478999999999999999864
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=96.23 Aligned_cols=116 Identities=14% Similarity=0.099 Sum_probs=82.3
Q ss_pred CCCCCeEEEecCCc------ChHHHHHHhhCC-CCeEEEeechhHhhhCCCCCCceE-EEcccCc-cCCCC-CEEEechh
Q 030025 19 FEHIKQLVDVGGSL------GNTLKAITSKYP-HIKGINFDLPHVIQHSPEYPGVKH-VGGDMFQ-SVPNG-DAILIKWI 88 (184)
Q Consensus 19 ~~~~~~ilDiG~G~------G~~~~~l~~~~~-~~~~~~~D~~~~~~~a~~~~~i~~-~~~d~~~-~~~~~-D~i~~~~~ 88 (184)
+++..+|||+|||+ |. ..++++.+ ..+++++|++.. .+++++ +++|+.+ +++.. |+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------v~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------VSDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------BCSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------CCCCEEEEECccccCCccCcccEEEEcCC
Confidence 67888999999955 66 44566665 689999999333 257999 9999987 44444 99998643
Q ss_pred hhc--------CC-hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 89 LHD--------WS-DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 89 l~~--------~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+. .. ......+++++.+.|||||++++...... ...++.+.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------------------------~~~~l~~~ 183 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------------------------WNADLYKL 183 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------CCHHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------CHHHHHHH
Confidence 221 00 11223789999999999999999643211 12467788
Q ss_pred HHHcCCceeEEE
Q 030025 160 ATEAGFSGIRFV 171 (184)
Q Consensus 160 l~~aGf~~i~~~ 171 (184)
+++.||..+++.
T Consensus 184 l~~~GF~~v~~~ 195 (290)
T 2xyq_A 184 MGHFSWWTAFVT 195 (290)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHcCCcEEEEE
Confidence 888899877765
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.37 E-value=9.2e-13 Score=96.85 Aligned_cols=108 Identities=9% Similarity=0.170 Sum_probs=79.2
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~ 78 (184)
+..+.+.+++.+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++. ++++++.+|+.+ +++
T Consensus 15 d~~~~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~ 91 (244)
T 1qam_A 15 SKHNIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFP 91 (244)
T ss_dssp CHHHHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCC
T ss_pred CHHHHHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcc
Confidence 4677888998887 7888999999999999999999985 68999999 8888877653 689999999988 665
Q ss_pred C-CCEEEechhhhcCChHHHHHHH--------------HHHHhhCCCCcEEE
Q 030025 79 N-GDAILIKWILHDWSDEHCLKLL--------------KNCHKSIPEGGKVI 115 (184)
Q Consensus 79 ~-~D~i~~~~~l~~~~~~~~~~~l--------------~~~~~~L~pgG~l~ 115 (184)
. .+..++++.-+++..+-...++ +.+.|+++|+|.+.
T Consensus 92 ~~~~~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~ 143 (244)
T 1qam_A 92 KNQSYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLA 143 (244)
T ss_dssp SSCCCEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHH
T ss_pred cCCCeEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchh
Confidence 4 3434443433343333222332 34778888888653
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-13 Score=101.07 Aligned_cols=109 Identities=10% Similarity=0.037 Sum_probs=80.7
Q ss_pred HHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC-CeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cC-----
Q 030025 12 ILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH-IKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SV----- 77 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~----- 77 (184)
+...+. ..+..+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ .++.++.+|+.+ +.
T Consensus 75 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 153 (274)
T 3ajd_A 75 PPIVLN-PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKN 153 (274)
T ss_dssp HHHHHC-CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHT
T ss_pred HHHHhC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhc
Confidence 344555 677889999999999999999998766 89999999 8888877653 479999999876 32
Q ss_pred CCC-CEEEech------hhhcC---Ch-------HHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 78 PNG-DAILIKW------ILHDW---SD-------EHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 78 ~~~-D~i~~~~------~l~~~---~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
... |+|++.- ++++- .. .....+++++.+.|||||++++++-..
T Consensus 154 ~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 154 EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 333 9998862 22210 00 112478999999999999999976543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-13 Score=103.75 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=73.5
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccCcc--C-CCC-CEEE
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMFQS--V-PNG-DAIL 84 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~~~--~-~~~-D~i~ 84 (184)
++..+|||||||+|..+..+++..+..+++++|+ +.+++.|+++ ++++++.+|+.+. . +.. |+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4568999999999999999999877889999999 8888877642 4689999998762 1 233 9999
Q ss_pred echhhhcCChHHH---HHHHHHHHhhCCCCcEEEEEe
Q 030025 85 IKWILHDWSDEHC---LKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 85 ~~~~l~~~~~~~~---~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+... +++.+... ..+++++++.|+|||.+++..
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8553 33322211 478999999999999999854
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.7e-13 Score=100.64 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=76.6
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccCcc---CCCC-CEEE
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMFQS---VPNG-DAIL 84 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~~~---~~~~-D~i~ 84 (184)
+...+|||||||+|.++..+++..+..+++++|+ +.+++.|+++ ++++++.+|..+. .+.. |+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 4578999999999999999998767789999999 8898877642 5799999998762 2233 9999
Q ss_pred echhhhcCChH--HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 85 IKWILHDWSDE--HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 85 ~~~~l~~~~~~--~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+....+..+.. ...++++++++.|+|||.+++..
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 96544322110 01368999999999999999853
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-13 Score=100.89 Aligned_cols=98 Identities=20% Similarity=0.255 Sum_probs=73.7
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccCcc--C-CCC-CEEE
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMFQS--V-PNG-DAIL 84 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~~~--~-~~~-D~i~ 84 (184)
+...+|||||||+|..+..+++..+..+++++|+ +.+++.++++ ++++++.+|+.+. . +.. |+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999877789999999 8888877652 5799999998762 2 233 9999
Q ss_pred echhhhcCChH---HHHHHHHHHHhhCCCCcEEEEE
Q 030025 85 IKWILHDWSDE---HCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 85 ~~~~l~~~~~~---~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+...-++.... ...++++++++.|+|||.+++.
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 85432212111 1147899999999999999995
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.5e-13 Score=102.84 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=76.0
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccCcc---CCCC-CEEE
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMFQS---VPNG-DAIL 84 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~~~---~~~~-D~i~ 84 (184)
++..+|||||||+|.++..+++..+..+++++|+ +.+++.|+++ ++++++.+|..+. .+.. |+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 4568999999999999999998777889999999 8888877542 5789999998762 2333 9999
Q ss_pred echhhhcCChH-H--HHHHHHHHHhhCCCCcEEEEEe
Q 030025 85 IKWILHDWSDE-H--CLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 85 ~~~~l~~~~~~-~--~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+... .++... . ..++++++++.|+|||.+++..
T Consensus 195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8653 222211 1 1478999999999999999853
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=5e-13 Score=103.65 Aligned_cols=95 Identities=21% Similarity=0.242 Sum_probs=72.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCc-cCCCC-CEEEechhhhc
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ-SVPNG-DAILIKWILHD 91 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~-D~i~~~~~l~~ 91 (184)
++++|||||||+|-++...++.. ..+++++|.+.|++.|++. ++|+++.+|+.+ .+|.. |+|++...-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 57899999999999987666653 4589999986577777652 569999999988 66665 99998554333
Q ss_pred CChH-HHHHHHHHHHhhCCCCcEEEE
Q 030025 92 WSDE-HCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 92 ~~~~-~~~~~l~~~~~~L~pgG~l~i 116 (184)
+..+ ....++....++|+|||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 3222 234678888899999999874
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.1e-12 Score=100.15 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=86.4
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCCCCceEEEcccCccC-CCC-
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSV-PNG- 80 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~-~~~- 80 (184)
...+++.+++.+. ..+..+|||+|||+|.++..++++. +..+++++|+ +.+++.| .++.++++|+.+.. ...
T Consensus 24 P~~l~~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~f 99 (421)
T 2ih2_A 24 PPEVVDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAF 99 (421)
T ss_dssp CHHHHHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCE
T ss_pred CHHHHHHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCC
Confidence 3567788888887 5567799999999999999999886 6789999999 8888877 68999999998733 233
Q ss_pred CEEEechhhhc----------CChHHH-----------------HHHHHHHHhhCCCCcEEEEEeee
Q 030025 81 DAILIKWILHD----------WSDEHC-----------------LKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 81 D~i~~~~~l~~----------~~~~~~-----------------~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
|+|+++-.... +.++.. ..+++.+.++|+|||++++..+.
T Consensus 100 D~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 100 DLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp EEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 99999533221 222221 25799999999999999986653
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-13 Score=100.37 Aligned_cols=110 Identities=16% Similarity=0.231 Sum_probs=82.2
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~ 78 (184)
+..+.+.+++.+. ..+..+|||+|||+|.++..+++.. .+++++|+ +.+++.++++ ++++++.+|+.+ +++
T Consensus 14 ~~~~~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~ 90 (245)
T 1yub_A 14 SEKVLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFP 90 (245)
T ss_dssp CTTTHHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCC
T ss_pred CHHHHHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcc
Confidence 4567888999988 8888999999999999999999985 79999999 8999988875 478999999988 555
Q ss_pred C-CCEEEechhhhcCChHHHHH----------HH----HHHHhhCCCCcEEEEE
Q 030025 79 N-GDAILIKWILHDWSDEHCLK----------LL----KNCHKSIPEGGKVIVV 117 (184)
Q Consensus 79 ~-~D~i~~~~~l~~~~~~~~~~----------~l----~~~~~~L~pgG~l~i~ 117 (184)
. ....++++.-++...+.... ++ +.+.++|+|||.+.+.
T Consensus 91 ~~~~f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 91 NKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp CSSEEEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred cCCCcEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 3 22233333323333222222 23 6699999999998764
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=96.75 Aligned_cols=101 Identities=12% Similarity=0.099 Sum_probs=79.1
Q ss_pred hHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccC
Q 030025 8 VLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMF 74 (184)
Q Consensus 8 ~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~ 74 (184)
...+++.+.+. .+.+.+|||||||+|..+..+++. + .+++++|+ +.+++.|+++ ++++++.+|..
T Consensus 57 ~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~ 134 (262)
T 2cmg_A 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLD 134 (262)
T ss_dssp HHHHHHHHHHHTTSSCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGG
T ss_pred HHHHHHHHHhhhcCCCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHH
Confidence 34455554431 245689999999999999999988 7 89999999 9999999874 46899999988
Q ss_pred ccCCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 75 QSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 75 ~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+.....|+|++.. .++. .+++++++.|+|||.+++.
T Consensus 135 ~~~~~fD~Ii~d~-----~dp~--~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 135 LDIKKYDLIFCLQ-----EPDI--HRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp SCCCCEEEEEESS-----CCCH--HHHHHHHTTEEEEEEEEEE
T ss_pred HHHhhCCEEEECC-----CChH--HHHHHHHHhcCCCcEEEEE
Confidence 7433339999862 3333 4899999999999999985
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.33 E-value=5e-12 Score=100.69 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=85.2
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC-CeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c--C
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH-IKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S--V 77 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~--~ 77 (184)
...+...+. ..+..+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ .++.++.+|+.+ + +
T Consensus 248 s~l~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~ 326 (450)
T 2yxl_A 248 SAVASIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEII 326 (450)
T ss_dssp HHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSS
T ss_pred hHHHHHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhh
Confidence 334455555 778889999999999999999998776 89999999 8888776553 579999999987 3 4
Q ss_pred C-CC-CEEEe------chhhhcCChHH--------------HHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 78 P-NG-DAILI------KWILHDWSDEH--------------CLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 78 ~-~~-D~i~~------~~~l~~~~~~~--------------~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+ .. |+|++ ..++++.++.. ...+++++.+.|||||++++++...
T Consensus 327 ~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 327 GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 4 33 99986 34555443321 1478999999999999999977543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-12 Score=96.10 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=78.2
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~ 76 (184)
+..+++.+++.+. ..+..+|||||||+|.++..++++ ..+++++|+ +.+++.++++ ++++++.+|+.+ +
T Consensus 27 ~~~i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~ 103 (299)
T 2h1r_A 27 NPGILDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV 103 (299)
T ss_dssp CHHHHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC
T ss_pred CHHHHHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC
Confidence 4567888999888 788899999999999999999987 469999999 8888877653 579999999987 5
Q ss_pred CCCCCEEEechhhhcCChHHHHHHH---------------HHHHhhCCCCc
Q 030025 77 VPNGDAILIKWILHDWSDEHCLKLL---------------KNCHKSIPEGG 112 (184)
Q Consensus 77 ~~~~D~i~~~~~l~~~~~~~~~~~l---------------~~~~~~L~pgG 112 (184)
.+..|+|+++... ++..+....++ +.+.|+++|+|
T Consensus 104 ~~~~D~Vv~n~py-~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 104 FPKFDVCTANIPY-KISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp CCCCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred cccCCEEEEcCCc-ccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 5545999986554 44555444555 44678898887
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.7e-12 Score=98.12 Aligned_cols=108 Identities=11% Similarity=0.162 Sum_probs=83.6
Q ss_pred HHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC-----CeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCC-C
Q 030025 12 ILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH-----IKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVP-N 79 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~-----~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~-~ 79 (184)
++..+....+..+|||+|||+|.++..+++..+. .+++|+|+ +.+++.|+.. .++.+..+|...+.+ .
T Consensus 121 ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~ 200 (344)
T 2f8l_A 121 LLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVD 200 (344)
T ss_dssp HHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCC
T ss_pred HHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccC
Confidence 4444421345689999999999999999988653 78999999 8888887653 368999999887433 3
Q ss_pred C-CEEEechhhhcCChHHH----------------HHHHHHHHhhCCCCcEEEEEee
Q 030025 80 G-DAILIKWILHDWSDEHC----------------LKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~----------------~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. |+|+++-.+++++.++. ..++.++.+.|+|||++++..+
T Consensus 201 ~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 201 PVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 3 99999988877654432 2589999999999999998764
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=98.14 Aligned_cols=113 Identities=14% Similarity=0.163 Sum_probs=85.5
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-c--C
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-S--V 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~--~ 77 (184)
.....+...+. ..+..+|||+|||+|..+..+++..++.+++++|+ +.+++.++++ .++.++.+|+.+ + +
T Consensus 233 ~~s~~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~ 311 (429)
T 1sqg_A 233 ASAQGCMTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWC 311 (429)
T ss_dssp HHHHTHHHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHH
T ss_pred HHHHHHHHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhc
Confidence 34445555666 67888999999999999999999988789999999 8888777653 357899999987 2 3
Q ss_pred CC-C-CEEEe------chhhhcCChHH--------------HHHHHHHHHhhCCCCcEEEEEeee
Q 030025 78 PN-G-DAILI------KWILHDWSDEH--------------CLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 78 ~~-~-D~i~~------~~~l~~~~~~~--------------~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+. . |+|++ ..++++.++.. ...+++++.+.|||||++++++-.
T Consensus 312 ~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 32 3 99986 23444433311 137899999999999999997743
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-11 Score=90.36 Aligned_cols=120 Identities=16% Similarity=0.161 Sum_probs=89.7
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCC-C-CCEEEechh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVP-N-GDAILIKWI 88 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~-~-~D~i~~~~~ 88 (184)
.+++.+|||+|||+|.++..++++. ..+++++|+ +.+++.++++ ++++++.+|..+-.+ . .|.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 4578999999999999999999874 468999999 8888888764 568999999987322 2 399988643
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCcee
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGI 168 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i 168 (184)
.. ...++..+.++|||||++.+.+....... .....+.+.+..++.|++..
T Consensus 202 ~~------~~~~l~~a~~~lk~gG~ih~~~~~~e~~~-----------------------~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 VR------THEFIPKALSIAKDGAIIHYHNTVPEKLM-----------------------PREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp SS------GGGGHHHHHHHEEEEEEEEEEEEEEGGGT-----------------------TTTTHHHHHHHHHHTTCEEE
T ss_pred Cc------HHHHHHHHHHHcCCCCEEEEEeeeccccc-----------------------chhHHHHHHHHHHHcCCcEE
Confidence 22 12578899999999999988765432210 01135677888899998754
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=98.74 Aligned_cols=108 Identities=9% Similarity=0.081 Sum_probs=80.7
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC-CeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c--CC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH-IKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S--VP 78 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~--~~ 78 (184)
..+...+. ..+..+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ . +.++.+|+.+ + .+
T Consensus 91 ~l~a~~L~-~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~ 168 (464)
T 3m6w_A 91 QAVGVLLD-PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFG 168 (464)
T ss_dssp HHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHC
T ss_pred HHHHHhcC-cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhcc
Confidence 34445555 778899999999999999999998754 79999999 8888888764 4 8899999876 2 33
Q ss_pred CC-CEEEec------hhhhcCCh-------H-------HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 79 NG-DAILIK------WILHDWSD-------E-------HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 79 ~~-D~i~~~------~~l~~~~~-------~-------~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.. |+|++. .++..-++ + ....+++++.+.|||||+|+.++-
T Consensus 169 ~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 169 TYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp SCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred ccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 44 999852 22322221 1 115789999999999999998653
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-11 Score=96.14 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=80.1
Q ss_pred HHHhcCCC--CCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c--CCC
Q 030025 13 LEAYKGFE--HIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S--VPN 79 (184)
Q Consensus 13 ~~~~~~~~--~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~--~~~ 79 (184)
...+. .. +..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .++.++.+|+.+ + .+.
T Consensus 108 ~~~L~-~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~ 186 (479)
T 2frx_A 108 VAALF-ADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPE 186 (479)
T ss_dssp HHHHT-TTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTT
T ss_pred HHHhC-cccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccc
Confidence 34455 55 788999999999999999999864 579999999 8888877654 578999999987 3 344
Q ss_pred C-CEEEec------hhhhcCC-------hH-------HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 80 G-DAILIK------WILHDWS-------DE-------HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 80 ~-D~i~~~------~~l~~~~-------~~-------~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. |.|++. .++.+.+ .. ....+|+++.++|||||+|++++-
T Consensus 187 ~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 187 MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp CEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 4 999872 2333222 11 123789999999999999998764
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=97.12 Aligned_cols=109 Identities=10% Similarity=0.092 Sum_probs=80.6
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c--CC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S--VP 78 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~--~~ 78 (184)
..+...+. ..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .++.++.+|..+ . .+
T Consensus 95 ~l~~~~L~-~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~ 173 (456)
T 3m4x_A 95 MIVGTAAA-AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFS 173 (456)
T ss_dssp HHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhcc
Confidence 34455566 77889999999999999999998854 479999999 8888877664 578899999876 2 33
Q ss_pred CC-CEEEech------hhhcCChH--------------HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 79 NG-DAILIKW------ILHDWSDE--------------HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 79 ~~-D~i~~~~------~l~~~~~~--------------~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.. |+|++.- ++..-++. ....+|+++.+.|||||+|+.++-
T Consensus 174 ~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 174 GFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp TCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred ccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 44 9998732 22211110 112789999999999999998664
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.2e-10 Score=86.62 Aligned_cols=164 Identities=17% Similarity=0.229 Sum_probs=98.7
Q ss_pred hHHHHHHHhcCCC-----CCCeEEEecCCcChHHHHHH--------hhC-------CCCeEEEeec-hhH-------hhh
Q 030025 8 VLQKILEAYKGFE-----HIKQLVDVGGSLGNTLKAIT--------SKY-------PHIKGINFDL-PHV-------IQH 59 (184)
Q Consensus 8 ~~~~l~~~~~~~~-----~~~~ilDiG~G~G~~~~~l~--------~~~-------~~~~~~~~D~-~~~-------~~~ 59 (184)
++.+.++.+. .. +..+|+|+|||+|.++..+. +++ |+.++...|+ ... +..
T Consensus 35 ~~~~ai~~l~-~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~ 113 (374)
T 3b5i_A 35 LLEETLENVH-LNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPP 113 (374)
T ss_dssp HHHHHHHTSC-CCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCC
T ss_pred HHHHHHHHhh-ccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhh
Confidence 3444455554 33 25789999999999998872 222 7788999997 333 222
Q ss_pred CCC------C------CC--ceEEEcccCc-cCCCC--CEEEechhhhcCChH---------------------------
Q 030025 60 SPE------Y------PG--VKHVGGDMFQ-SVPNG--DAILIKWILHDWSDE--------------------------- 95 (184)
Q Consensus 60 a~~------~------~~--i~~~~~d~~~-~~~~~--D~i~~~~~l~~~~~~--------------------------- 95 (184)
.++ + +. +.-+.+.+.. .+|.. |+|+++.++|++++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~ 193 (374)
T 3b5i_A 114 LVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTT 193 (374)
T ss_dssp BCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHH
T ss_pred hhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHH
Confidence 211 0 11 2224455554 56655 999999999998621
Q ss_pred ---------HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccc--cc--hhhhhhH-hh----------hh--CCCcc
Q 030025 96 ---------HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHS--KI--NSLADVL-VM----------TQ--YPGGK 149 (184)
Q Consensus 96 ---------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~--~~--~~~~~~~-~~----------~~--~~~~~ 149 (184)
+...+|+..++.|+|||++++.-....+........ .. ..+.... .+ .. .....
T Consensus 194 ~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y 273 (374)
T 3b5i_A 194 TAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVY 273 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCcccc
Confidence 334578899999999999999887665431111000 00 0010000 00 00 11223
Q ss_pred ccCHHHHHHHHH-HcCCceeEEEe
Q 030025 150 ERTKHEFTTLAT-EAGFSGIRFVC 172 (184)
Q Consensus 150 ~~~~~~~~~~l~-~aGf~~i~~~~ 172 (184)
.++.+++.+.++ +.||++.++..
T Consensus 274 ~ps~~E~~~~l~~~~~F~I~~le~ 297 (374)
T 3b5i_A 274 APSLQDFKEVVDANGSFAIDKLVV 297 (374)
T ss_dssp CCCHHHHHHHHHHHCSEEEEEEEE
T ss_pred CCCHHHHHHHHHhcCCcEEEEEEE
Confidence 469999999998 58999877654
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-10 Score=90.22 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=77.0
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---C--CceEEEcccCcc---CCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---P--GVKHVGGDMFQS---VPN 79 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~--~i~~~~~d~~~~---~~~ 79 (184)
...++..+. ++..+|||+|||+|.++..+++. +..++++|+ +.+++.++++ + ...+..+|+.+. .+.
T Consensus 204 ~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~ 279 (393)
T 4dmg_A 204 NRRLFEAMV--RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEG 279 (393)
T ss_dssp HHHHHHTTC--CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCC
T ss_pred HHHHHHHHh--cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcC
Confidence 344454432 45789999999999999999987 345999999 8999988764 2 235778998762 223
Q ss_pred -CCEEEechhhhcCC-------hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 80 -GDAILIKWILHDWS-------DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 80 -~D~i~~~~~l~~~~-------~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.|+|++.-....-. ......+++.+.++|+|||.|++.+.
T Consensus 280 ~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 280 PFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp CEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 39999854321111 12334789999999999999997664
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=7.9e-11 Score=88.62 Aligned_cols=83 Identities=8% Similarity=0.146 Sum_probs=70.4
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~ 78 (184)
+..+++.+++.+. ..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++. ++++++.+|+.+ +++
T Consensus 35 d~~i~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~ 111 (295)
T 3gru_A 35 DKNFVNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLN 111 (295)
T ss_dssp CHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGG
T ss_pred CHHHHHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcc
Confidence 4567889999988 888899999999999999999998 468999999 8898888764 789999999998 666
Q ss_pred C--CCEEEechhhh
Q 030025 79 N--GDAILIKWILH 90 (184)
Q Consensus 79 ~--~D~i~~~~~l~ 90 (184)
. .|+|+++...+
T Consensus 112 ~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 112 KLDFNKVVANLPYQ 125 (295)
T ss_dssp GSCCSEEEEECCGG
T ss_pred cCCccEEEEeCccc
Confidence 5 39999775543
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=85.50 Aligned_cols=89 Identities=19% Similarity=0.229 Sum_probs=71.7
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--CCceEEEcccCc-cCCCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--PGVKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--~~i~~~~~d~~~-~~~~~ 80 (184)
+..+++.+++.+. ..+..+|||||||+|.++..++++ +..+++++|+ +.+++.+++. .+++++.+|+.+ +++..
T Consensus 16 d~~i~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~ 93 (249)
T 3ftd_A 16 SEGVLKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSL 93 (249)
T ss_dssp CHHHHHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGS
T ss_pred CHHHHHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHc
Confidence 4678899999998 888899999999999999999987 3579999999 8999888765 578999999988 55542
Q ss_pred --CEEEechhhhcCChH
Q 030025 81 --DAILIKWILHDWSDE 95 (184)
Q Consensus 81 --D~i~~~~~l~~~~~~ 95 (184)
+.+++.+.-+++..+
T Consensus 94 ~~~~~vv~NlPy~i~~~ 110 (249)
T 3ftd_A 94 GKELKVVGNLPYNVASL 110 (249)
T ss_dssp CSSEEEEEECCTTTHHH
T ss_pred cCCcEEEEECchhccHH
Confidence 455666666665544
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-10 Score=89.98 Aligned_cols=103 Identities=14% Similarity=0.188 Sum_probs=77.0
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccC-
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSV- 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~- 77 (184)
..++..+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|+++ .+++|+.+|+.+.+
T Consensus 272 e~l~~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~ 348 (433)
T 1uwv_A 272 QKMVARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 (433)
T ss_dssp HHHHHHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCS
T ss_pred HHHHHHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhh
Confidence 446677777777 777889999999999999999987 579999999 8899888763 47999999998732
Q ss_pred ----CC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 78 ----PN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 78 ----~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+. . |+|++.-...-. ..+++.+.+ ++|++.++++
T Consensus 349 ~~~~~~~~fD~Vv~dPPr~g~-----~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 349 KQPWAKNGFDKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp SSGGGTTCCSEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEEE
T ss_pred hhhhhcCCCCEEEECCCCccH-----HHHHHHHHh-cCCCeEEEEE
Confidence 22 3 999985433221 135555554 6888887773
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.8e-11 Score=93.19 Aligned_cols=99 Identities=16% Similarity=0.072 Sum_probs=74.5
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------C--CceEEEcccCccC------CCC-CEE
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------P--GVKHVGGDMFQSV------PNG-DAI 83 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~--~i~~~~~d~~~~~------~~~-D~i 83 (184)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|+++ . +++++.+|+.+.. +.. |+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 457899999999999999999863 348999999 8999888764 2 7899999997621 223 999
Q ss_pred Eechhh-----hcCC--hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 84 LIKWIL-----HDWS--DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 84 ~~~~~l-----~~~~--~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
++.-.. .+.. .....++++.+.++|+|||.+++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 984333 2222 12334678889999999999998653
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-10 Score=85.21 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=72.5
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCc-cCCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQ-SVPN 79 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~-~~~~ 79 (184)
+..+++.+++.+. ..+. +|||||||+|.++..++++. .+++++|+ +.|++.++++ .+++++.+|+.+ +++.
T Consensus 32 d~~i~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~ 107 (271)
T 3fut_A 32 SEAHLRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEE 107 (271)
T ss_dssp CHHHHHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGG
T ss_pred CHHHHHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhh
Confidence 4568899999998 7888 99999999999999999985 68999999 8898887653 579999999988 5553
Q ss_pred --C-CEEEechhhhcCChHHHHHHHHH
Q 030025 80 --G-DAILIKWILHDWSDEHCLKLLKN 103 (184)
Q Consensus 80 --~-D~i~~~~~l~~~~~~~~~~~l~~ 103 (184)
. |.|+++ .-+++..+-..+++..
T Consensus 108 ~~~~~~iv~N-lPy~iss~il~~ll~~ 133 (271)
T 3fut_A 108 VPQGSLLVAN-LPYHIATPLVTRLLKT 133 (271)
T ss_dssp SCTTEEEEEE-ECSSCCHHHHHHHHHH
T ss_pred ccCccEEEec-CcccccHHHHHHHhcC
Confidence 2 666654 4456666544444443
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-10 Score=89.10 Aligned_cols=115 Identities=9% Similarity=0.009 Sum_probs=85.5
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC--------------------------------------
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH-------------------------------------- 45 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~-------------------------------------- 45 (184)
....++..++.... +.+..+|||.+||+|.++..++....+
T Consensus 185 l~e~lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 263 (393)
T 3k0b_A 185 IKETMAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP 263 (393)
T ss_dssp CCHHHHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred CcHHHHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence 35567788888877 888999999999999999888866432
Q ss_pred CeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCCC-CEEEechhhhcC-C-hHHHHHHHHHHHhhCCC--C
Q 030025 46 IKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPNG-DAILIKWILHDW-S-DEHCLKLLKNCHKSIPE--G 111 (184)
Q Consensus 46 ~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~-D~i~~~~~l~~~-~-~~~~~~~l~~~~~~L~p--g 111 (184)
.+++++|+ +.|++.|+++ .+++++++|+.+ +.+.. |+|+++-.+..- . .++...+++.+.+.||+ |
T Consensus 264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g 343 (393)
T 3k0b_A 264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPT 343 (393)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCC
Confidence 57999999 9999988764 359999999988 44444 999998555432 2 13344566666666655 8
Q ss_pred cEEEEEee
Q 030025 112 GKVIVVES 119 (184)
Q Consensus 112 G~l~i~~~ 119 (184)
|.+++...
T Consensus 344 ~~~~iit~ 351 (393)
T 3k0b_A 344 WSVYVLTS 351 (393)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEC
Confidence 88888654
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.2e-11 Score=92.93 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=75.4
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccC------CCC-CEEEec
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSV------PNG-DAILIK 86 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~------~~~-D~i~~~ 86 (184)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|+++ .+++++.+|+.+.. +.. |+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 6789999999999999999998 568999999 8899888764 45899999998621 233 999984
Q ss_pred hhhhcCC-------hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 87 WILHDWS-------DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 87 ~~l~~~~-------~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
-...... ......++.++.++|+|||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 3321111 13345789999999999999999764
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-10 Score=87.52 Aligned_cols=115 Identities=10% Similarity=-0.006 Sum_probs=88.4
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC--------------------------------------
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH-------------------------------------- 45 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~-------------------------------------- 45 (184)
....++..|+.... +.+...++|.+||+|.++...+....+
T Consensus 178 l~e~LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 256 (384)
T 3ldg_A 178 IKENMAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ 256 (384)
T ss_dssp CCHHHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred CcHHHHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence 34567788888877 888999999999999999888865433
Q ss_pred CeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCCC-CEEEechhhhc-CC-hHHHHHHHHHHHhhCCC--C
Q 030025 46 IKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPNG-DAILIKWILHD-WS-DEHCLKLLKNCHKSIPE--G 111 (184)
Q Consensus 46 ~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~-D~i~~~~~l~~-~~-~~~~~~~l~~~~~~L~p--g 111 (184)
.+++++|+ +.|++.|+++ ..++++++|+.+ +.+.. |+|+++-.++. +. .++...+++.+.+.||+ |
T Consensus 257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g 336 (384)
T 3ldg_A 257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKT 336 (384)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTT
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCC
Confidence 57999999 9999988764 358999999998 44444 99999766544 33 34555777777777766 8
Q ss_pred cEEEEEee
Q 030025 112 GKVIVVES 119 (184)
Q Consensus 112 G~l~i~~~ 119 (184)
|.+.+...
T Consensus 337 ~~~~iit~ 344 (384)
T 3ldg_A 337 WSQFILTN 344 (384)
T ss_dssp SEEEEEES
T ss_pred cEEEEEEC
Confidence 98888654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.11 E-value=4.8e-11 Score=93.55 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=75.9
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------C-CceEEEcccCccC------CCC-CEEE
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------P-GVKHVGGDMFQSV------PNG-DAIL 84 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~-~i~~~~~d~~~~~------~~~-D~i~ 84 (184)
++..+|||+|||+|.++..+++. ...+++++|+ +.+++.++++ . +++++.+|+.+.. +.. |+|+
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 36789999999999999999986 3458999999 8898888764 2 7899999987621 223 9999
Q ss_pred echhhhcCCh-------HHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 85 IKWILHDWSD-------EHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 85 ~~~~l~~~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+.-....... .....++.++.++|+|||.+++.+.
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 8543221111 3345789999999999999998764
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-10 Score=89.63 Aligned_cols=114 Identities=14% Similarity=0.084 Sum_probs=86.6
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC--------------------------------------C
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH--------------------------------------I 46 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~--------------------------------------~ 46 (184)
...++..|+.... +.+..+|||++||+|.++..++....+ .
T Consensus 180 ~e~lAa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 258 (385)
T 3ldu_A 180 RETLAAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF 258 (385)
T ss_dssp CHHHHHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC
T ss_pred cHHHHHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCc
Confidence 4557777888777 888999999999999999988876322 5
Q ss_pred eEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCCC-CEEEechhhhcC-C-hHHHHHHHHHHHhhCCC--Cc
Q 030025 47 KGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPNG-DAILIKWILHDW-S-DEHCLKLLKNCHKSIPE--GG 112 (184)
Q Consensus 47 ~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~-D~i~~~~~l~~~-~-~~~~~~~l~~~~~~L~p--gG 112 (184)
+++|+|+ +.+++.|+++ .++++.++|+.+ +.+.. |+|+++-.+..- . .++...+++++.+.|++ ||
T Consensus 259 ~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~ 338 (385)
T 3ldu_A 259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNW 338 (385)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSC
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCC
Confidence 7999999 9999998874 368999999988 44444 999997765432 2 23445677777777766 88
Q ss_pred EEEEEee
Q 030025 113 KVIVVES 119 (184)
Q Consensus 113 ~l~i~~~ 119 (184)
.+.+...
T Consensus 339 ~~~iit~ 345 (385)
T 3ldu_A 339 SYYLITS 345 (385)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 8887553
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.10 E-value=5.2e-11 Score=94.69 Aligned_cols=114 Identities=16% Similarity=0.117 Sum_probs=87.4
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-------------CCCeEEEeec-hhHhhhCCCC------C
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-------------PHIKGINFDL-PHVIQHSPEY------P 64 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-------------~~~~~~~~D~-~~~~~~a~~~------~ 64 (184)
...+++.|++.+. ..+..+|||.|||+|.++..+++.. +..+++|+|+ +.+++.|+.+ .
T Consensus 156 P~~v~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~ 234 (445)
T 2okc_A 156 PRPLIQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG 234 (445)
T ss_dssp CHHHHHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 4567778888776 5667899999999999999888763 3468999999 8888877642 2
Q ss_pred --CceEEEcccCc-cCCCC-CEEEechhhhcCChH---------------HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 65 --GVKHVGGDMFQ-SVPNG-DAILIKWILHDWSDE---------------HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 65 --~i~~~~~d~~~-~~~~~-D~i~~~~~l~~~~~~---------------~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
++.+.++|... +.... |+|+++-.++..... ....++..+.+.|+|||++.+..+
T Consensus 235 ~~~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 235 TDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp SSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 67899999987 43334 999998776653211 113789999999999999988765
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.1e-10 Score=88.90 Aligned_cols=99 Identities=11% Similarity=0.058 Sum_probs=75.0
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------C-CceEEEcccCccC------CCC-CEE
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------P-GVKHVGGDMFQSV------PNG-DAI 83 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~-~i~~~~~d~~~~~------~~~-D~i 83 (184)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|+++ . +++++.+|+.+.. +.. |+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 357899999999999999999874 458999999 8898888653 2 6889999997621 223 999
Q ss_pred EechhhhcCC-------hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 84 LIKWILHDWS-------DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 84 ~~~~~l~~~~-------~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
++.-...... ......++.++.+.|+|||.+++...
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9864321110 12345789999999999999998663
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=8.8e-11 Score=90.14 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=74.5
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCCCCEEEechhhh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPNGDAILIKWILH 90 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~~D~i~~~~~l~ 90 (184)
+.+..+|||+|||+|.++.. ++ ...+++++|+ +.+++.++++ +++.++.+|+.+.....|+|++.....
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPKF 269 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTTT
T ss_pred cCCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcHh
Confidence 35678999999999999998 76 4679999999 8898888764 479999999988443339999853322
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
. ..+++.+.++|+|||.+++.+..
T Consensus 270 ~------~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 270 A------HKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp G------GGGHHHHHHHEEEEEEEEEEEEE
T ss_pred H------HHHHHHHHHHcCCCCEEEEEEee
Confidence 1 26899999999999999997754
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=85.62 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=65.4
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~ 78 (184)
+..+++.+++.+. ..+..+|||||||+|.++. +. +.+..+++++|+ +.|++.++++ ++++++.+|+.+ +++
T Consensus 6 d~~i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~ 82 (252)
T 1qyr_A 6 DQFVIDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG 82 (252)
T ss_dssp CHHHHHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred CHHHHHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHH
Confidence 4678889999998 8888999999999999999 54 444334999999 9999988765 479999999987 443
Q ss_pred C------CCEEEechhhhcCChH
Q 030025 79 N------GDAILIKWILHDWSDE 95 (184)
Q Consensus 79 ~------~D~i~~~~~l~~~~~~ 95 (184)
. .+.+++.+.-++++.+
T Consensus 83 ~~~~~~~~~~~vvsNlPY~i~~~ 105 (252)
T 1qyr_A 83 ELAEKMGQPLRVFGNLPYNISTP 105 (252)
T ss_dssp HHHHHHTSCEEEEEECCTTTHHH
T ss_pred HhhcccCCceEEEECCCCCccHH
Confidence 2 2334444444455444
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.6e-11 Score=88.12 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=62.2
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC--CeEEEeec-hhHhhhCCCC--CCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH--IKGINFDL-PHVIQHSPEY--PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~--~~~~~~D~-~~~~~~a~~~--~~i~~~~~d~~~-~~~ 78 (184)
+..+.+.+++.+. ..+..+|||||||+|.++..++++.+. .+++++|+ +.|++.++++ ++++++.+|+.+ +++
T Consensus 27 d~~i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 27 DHGVIDAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp CHHHHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred CHHHHHHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 4567889999998 888999999999999999999998543 45999999 8999888765 689999999987 554
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.8e-10 Score=83.97 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=61.5
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~ 78 (184)
+..+++.+++.+. ..+..+|||||||+|.++..++++. .+++++|+ +.|++.++++ ++++++.+|+.+ +++
T Consensus 14 d~~i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 14 DSFVLQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp CHHHHHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred CHHHHHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 4568889999998 8889999999999999999999985 68999999 8898887653 689999999988 553
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-09 Score=80.64 Aligned_cols=108 Identities=13% Similarity=0.032 Sum_probs=71.5
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCCC-C-
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVPN-G- 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~~-~- 80 (184)
..++.+... +.+..+|||+|||+|.++..++++.+...+.++|+ -++....... .++.....++.. .++. .
T Consensus 63 L~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 141 (277)
T 3evf_A 63 LRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKC 141 (277)
T ss_dssp HHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCc
Confidence 344555544 77888999999999999998888765557778887 4432112211 145555565432 4433 2
Q ss_pred CEEEechhhh----cCChHHHHHHHHHHHhhCCCC-cEEEEE
Q 030025 81 DAILIKWILH----DWSDEHCLKLLKNCHKSIPEG-GKVIVV 117 (184)
Q Consensus 81 D~i~~~~~l~----~~~~~~~~~~l~~~~~~L~pg-G~l~i~ 117 (184)
|+|++..+.+ ..+......+|+.+.++|+|| |.+++-
T Consensus 142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K 183 (277)
T 3evf_A 142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK 183 (277)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 9999977655 222222235678899999999 999983
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.3e-10 Score=86.90 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=69.2
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---C--CceEEEcccCccCC-CCCEEEechhhhcC
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---P--GVKHVGGDMFQSVP-NGDAILIKWILHDW 92 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~--~i~~~~~d~~~~~~-~~D~i~~~~~l~~~ 92 (184)
.+..+|||+|||+|.++..+++. ..+++++|. +.+++.|+++ + .++++.+|+.+..+ ..|+|++.-.-...
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~~fD~Vv~dPPr~g~ 366 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGL 366 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCTTCSEEEECCCTTCS
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCccCCCEEEEcCCccch
Confidence 56789999999999999999986 458999999 8999988764 1 28999999988433 34999985543222
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
. + .+++.+. .|+|||.++++
T Consensus 367 ~-~---~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 367 H-P---RLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp C-H---HHHHHHH-HHCCSEEEEEE
T ss_pred H-H---HHHHHHH-hcCCCcEEEEE
Confidence 2 1 3566554 48999999885
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=99.02 E-value=8.3e-09 Score=79.39 Aligned_cols=151 Identities=17% Similarity=0.097 Sum_probs=92.9
Q ss_pred CCCCeEEEecCCcChHHHHHHhh----------------CCCCeEEEeec-hhHhh-hCCCCC------CceE---EEcc
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSK----------------YPHIKGINFDL-PHVIQ-HSPEYP------GVKH---VGGD 72 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~----------------~~~~~~~~~D~-~~~~~-~a~~~~------~i~~---~~~d 72 (184)
+...+|+|+||++|.++..+.+. .|+..+...|+ .+... ..+..+ +--| +.+.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999888766554 46788899997 43332 222222 2233 3455
Q ss_pred cCc-cCCCC--CEEEechhhhcCChH-------------------------------HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 73 MFQ-SVPNG--DAILIKWILHDWSDE-------------------------------HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 73 ~~~-~~~~~--D~i~~~~~l~~~~~~-------------------------------~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+.. .+|.. |+++++.++||+++. +-..+|+.-++.|+|||++++.-
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 554 56665 999999999997531 22345888899999999999987
Q ss_pred eecCCCCCCC-cccc-chhhhhhH-hh------------hhCCCccccCHHHHHHHHHHcCC-ceeEE
Q 030025 119 SVLPELPENG-THSK-INSLADVL-VM------------TQYPGGKERTKHEFTTLATEAGF-SGIRF 170 (184)
Q Consensus 119 ~~~~~~~~~~-~~~~-~~~~~~~~-~~------------~~~~~~~~~~~~~~~~~l~~aGf-~~i~~ 170 (184)
....+..... .... ...+.... -+ ........++.+++++.+++.|. ++.++
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 7665431100 0000 00011110 00 00112345689999999999964 65554
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.5e-09 Score=80.63 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=90.5
Q ss_pred CCeEEEecCCcChHHHHHHhh-----------------CCCCeEEEeech------------hHhhhCCC----CCCceE
Q 030025 22 IKQLVDVGGSLGNTLKAITSK-----------------YPHIKGINFDLP------------HVIQHSPE----YPGVKH 68 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~-----------------~~~~~~~~~D~~------------~~~~~a~~----~~~i~~ 68 (184)
..+|+|+||++|.++..+... .|+.++...|+| .+.+..++ ..+--|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 678999999999999988766 366788888864 12221111 112344
Q ss_pred EE---cccCc-cCCCC--CEEEechhhhcCChHH-------------------------H------------HHHHHHHH
Q 030025 69 VG---GDMFQ-SVPNG--DAILIKWILHDWSDEH-------------------------C------------LKLLKNCH 105 (184)
Q Consensus 69 ~~---~d~~~-~~~~~--D~i~~~~~l~~~~~~~-------------------------~------------~~~l~~~~ 105 (184)
+. +.+.. .+|.. |+|+++.++||+++.. . ..+|+.-+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 44444 56665 9999999999975321 1 12366668
Q ss_pred hhCCCCcEEEEEeeecCCCC-CCCcc-ccchhhhhhH--------hhh-hCCCccccCHHHHHHHHHHcC-CceeEEE
Q 030025 106 KSIPEGGKVIVVESVLPELP-ENGTH-SKINSLADVL--------VMT-QYPGGKERTKHEFTTLATEAG-FSGIRFV 171 (184)
Q Consensus 106 ~~L~pgG~l~i~~~~~~~~~-~~~~~-~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~l~~aG-f~~i~~~ 171 (184)
+.|+|||++++.-....+.. ..... .....+.++. ... .......++.+++++.++++| |++.++.
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 99999999999877654431 10100 0000111110 000 011234569999999999995 7776654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=9.7e-10 Score=91.81 Aligned_cols=98 Identities=12% Similarity=0.166 Sum_probs=74.6
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCcc---CCCC-CEEEech
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQS---VPNG-DAILIKW 87 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~~---~~~~-D~i~~~~ 87 (184)
+..+|||+|||+|.++..++... ..+++++|+ +.+++.++++ .+++++++|+.+. .... |+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 57899999999999999988853 347999999 8899888764 2689999999872 2233 9999854
Q ss_pred hhh--------cCC-hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILH--------DWS-DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~--------~~~-~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
... .+. ......+++.+.++|+|||.|++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 321 111 23455789999999999999997553
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=4e-09 Score=78.88 Aligned_cols=110 Identities=17% Similarity=0.280 Sum_probs=82.9
Q ss_pred HHhHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----------CCceEEEc
Q 030025 6 TLVLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----------PGVKHVGG 71 (184)
Q Consensus 6 ~~~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------~~i~~~~~ 71 (184)
.....+++.+.+- -+.+++||-||.|.|..++.+++..+..+++.+|+ +.+++.++++ ++++++.+
T Consensus 66 e~~YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~ 145 (294)
T 3o4f_A 66 EFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVID 145 (294)
T ss_dssp HHHHHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEec
Confidence 3455666655441 35678999999999999999999877789999999 8888887653 78999999
Q ss_pred ccCccCC---CC-CEEEechhh-----hcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 72 DMFQSVP---NG-DAILIKWIL-----HDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 72 d~~~~~~---~~-D~i~~~~~l-----~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
|..+.+. .. |+|++-..= ..+-. .++++.+++.|+|||.++...
T Consensus 146 Dg~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t---~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 146 DGVNFVNQTSQTFDVIISDCTDPIGPGESLFT---SAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp CTTTTTSCSSCCEEEEEESCCCCCCTTCCSSC---CHHHHHHHHTEEEEEEEEEEE
T ss_pred hHHHHHhhccccCCEEEEeCCCcCCCchhhcC---HHHHHHHHHHhCCCCEEEEec
Confidence 9987322 22 999874321 11111 268999999999999999854
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-09 Score=79.54 Aligned_cols=118 Identities=15% Similarity=0.145 Sum_probs=77.2
Q ss_pred CCCeEEEecCCcChHHHHHHhh-------CCC-----CeEEEeec-h---hHhhhC-----------C------------
Q 030025 21 HIKQLVDVGGSLGNTLKAITSK-------YPH-----IKGINFDL-P---HVIQHS-----------P------------ 61 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~-------~~~-----~~~~~~D~-~---~~~~~a-----------~------------ 61 (184)
+..+|||||+|+|..+..+++. .|. .++++++. + +++..+ +
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999999887765 563 58999996 5 222211 1
Q ss_pred --------CCCCceEEEcccCc---cCCC----C-CEEEech-hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 62 --------EYPGVKHVGGDMFQ---SVPN----G-DAILIKW-ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 62 --------~~~~i~~~~~d~~~---~~~~----~-D~i~~~~-~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
...++++..+|+.+ ..+. . |+|+.-. +-..-++-....+|+.+++.|+|||+|+...
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys------ 213 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT------ 213 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC------
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe------
Confidence 11346788999876 2222 3 9998842 2211111012368999999999999988511
Q ss_pred CCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEE
Q 030025 125 PENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFV 171 (184)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~ 171 (184)
....+++.|+++||++.+..
T Consensus 214 ---------------------------aa~~vrr~L~~aGF~v~~~~ 233 (257)
T 2qy6_A 214 ---------------------------SAGFVRRGLQEAGFTMQKRK 233 (257)
T ss_dssp ---------------------------CBHHHHHHHHHHTEEEEEEC
T ss_pred ---------------------------CCHHHHHHHHHCCCEEEeCC
Confidence 01346778899999966543
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-08 Score=77.87 Aligned_cols=144 Identities=11% Similarity=0.134 Sum_probs=101.9
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCC---------------------------CCCceEEEcc
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPE---------------------------YPGVKHVGGD 72 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------------------------~~~i~~~~~d 72 (184)
.+...|+.+|||.......+...+++++++.+|.|++++.-++ .++..++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3578999999999999999998878899999998666544322 1468899999
Q ss_pred cCc-cC--------C--CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhH
Q 030025 73 MFQ-SV--------P--NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVL 140 (184)
Q Consensus 73 ~~~-~~--------~--~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 140 (184)
+.+ .+ + +. .++++.+++.+++.++...+++.+.+.+ |+|.+++.|...+...... ... .....+.
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~-fg~-~m~~~l~ 252 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDR-FGA-IMQSNLK 252 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCC-HHH-HHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcch-HHH-HHHHHhh
Confidence 987 32 1 22 7889999999999999999999999988 7888888887766221111 100 0011111
Q ss_pred h-hhh-CCC-ccccCHHHHHHHHHHcCCc
Q 030025 141 V-MTQ-YPG-GKERTKHEFTTLATEAGFS 166 (184)
Q Consensus 141 ~-~~~-~~~-~~~~~~~~~~~~l~~aGf~ 166 (184)
. ... ..+ ..+.+.++..++|+++||+
T Consensus 253 ~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 253 ESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred cccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 1 100 111 2346899999999999997
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.5e-09 Score=79.92 Aligned_cols=81 Identities=21% Similarity=0.279 Sum_probs=67.2
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-c--
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-S-- 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~-- 76 (184)
..+.+.+++.+. ..+..+|||+|||+|..+..++++++..+++++|. +.+++.|+++ ++++++++|+.+ +
T Consensus 12 pvLl~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~ 90 (301)
T 1m6y_A 12 PVMVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFL 90 (301)
T ss_dssp CTTHHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHH
T ss_pred HHHHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 346788889988 78889999999999999999999988889999999 9999888653 579999999876 2
Q ss_pred CC----CC-CEEEech
Q 030025 77 VP----NG-DAILIKW 87 (184)
Q Consensus 77 ~~----~~-D~i~~~~ 87 (184)
++ .. |.|++..
T Consensus 91 l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 91 LKTLGIEKVDGILMDL 106 (301)
T ss_dssp HHHTTCSCEEEEEEEC
T ss_pred HHhcCCCCCCEEEEcC
Confidence 21 23 9888744
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.1e-09 Score=76.41 Aligned_cols=108 Identities=18% Similarity=0.137 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEc--ccCccCCC--
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGG--DMFQSVPN-- 79 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~--d~~~~~~~-- 79 (184)
..+|.+.+. +.+..+|||+|||.|.++..++++.+...++++|+ ..+...+... .++..... |+. .++.
T Consensus 79 L~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~-~l~~~~ 156 (282)
T 3gcz_A 79 LRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVF-NMEVIP 156 (282)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGG-GSCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchh-hcCCCC
Confidence 455666775 88889999999999999999888776667889998 5544333321 23333332 322 2322
Q ss_pred CCEEEechhhh----cCChHHHHHHHHHHHhhCCCC--cEEEEEe
Q 030025 80 GDAILIKWILH----DWSDEHCLKLLKNCHKSIPEG--GKVIVVE 118 (184)
Q Consensus 80 ~D~i~~~~~l~----~~~~~~~~~~l~~~~~~L~pg--G~l~i~~ 118 (184)
.|+|+|..+.. ..+......+|+-+.++|+|| |.+++--
T Consensus 157 ~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv 201 (282)
T 3gcz_A 157 GDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV 201 (282)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred cCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 39999977665 122222235688888999999 9999844
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-09 Score=83.99 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=72.8
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc--
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS-- 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~-- 76 (184)
..++..+++.+. .. ..+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ ++++++.+|+.+.
T Consensus 200 ~~l~~~~~~~~~-~~-~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~ 275 (369)
T 3bt7_A 200 IQMLEWALDVTK-GS-KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ 275 (369)
T ss_dssp HHHHHHHHHHTT-TC-CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH
T ss_pred HHHHHHHHHHhh-cC-CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH
Confidence 345566666665 43 4789999999999999988853 58999999 8899888753 5789999998761
Q ss_pred -CC---------------CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 77 -VP---------------NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 77 -~~---------------~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+. .. |+|++.-.-. .+..++.+.|+|+|+++..+
T Consensus 276 ~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 276 AMNGVREFNRLQGIDLKSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp HHSSCCCCTTGGGSCGGGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEE
T ss_pred HHhhccccccccccccccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEE
Confidence 21 13 9998742211 23455666677899988865
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-08 Score=76.29 Aligned_cols=107 Identities=13% Similarity=0.079 Sum_probs=73.7
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cC--C-
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SV--P- 78 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~--~- 78 (184)
.+...+. ..+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .++.++.+|+.+ .. +
T Consensus 93 l~~~~l~-~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 171 (309)
T 2b9e_A 93 LPAMLLD-PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPR 171 (309)
T ss_dssp HHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGG
T ss_pred HHHHHhC-CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccc
Confidence 3344555 6778999999999999999999874 5689999999 8888877653 579999999876 22 1
Q ss_pred -CC-CEEEec------hhhhcCChH----------------HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 79 -NG-DAILIK------WILHDWSDE----------------HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 79 -~~-D~i~~~------~~l~~~~~~----------------~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.. |.|++. .++..-++. ...++|+.+.++++ ||+|+.+.-
T Consensus 172 ~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTC 235 (309)
T 2b9e_A 172 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTC 235 (309)
T ss_dssp GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred cCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence 23 999862 222221110 01257888888886 898887553
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.2e-09 Score=87.12 Aligned_cols=110 Identities=17% Similarity=0.166 Sum_probs=74.3
Q ss_pred HHhHHHHHHHhcC---CCCCCeEEEecCCcChHHHHHH---hhC-CCCeEEEeechhHhhhCCCC-------CCceEEEc
Q 030025 6 TLVLQKILEAYKG---FEHIKQLVDVGGSLGNTLKAIT---SKY-PHIKGINFDLPHVIQHSPEY-------PGVKHVGG 71 (184)
Q Consensus 6 ~~~~~~l~~~~~~---~~~~~~ilDiG~G~G~~~~~l~---~~~-~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~ 71 (184)
+.+.+.+.+..+. ..+...|||||||+|-++...+ ++. ..+++.+++.+.+...+++. ++|+++.+
T Consensus 339 ~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~g 418 (637)
T 4gqb_A 339 QAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSS 418 (637)
T ss_dssp HHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEES
T ss_pred HHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeC
Confidence 3444455544331 2234679999999998844333 332 33478999984455555442 67999999
Q ss_pred ccCc-cCCCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEE
Q 030025 72 DMFQ-SVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 72 d~~~-~~~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~ 115 (184)
|+++ ..|+. |+||+.+.=..+..+-..+++....|.|||||.++
T Consensus 419 d~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 419 DMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred cceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 9999 67766 99999665444433434467888899999999875
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-08 Score=74.59 Aligned_cols=105 Identities=15% Similarity=0.193 Sum_probs=73.6
Q ss_pred HHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-h-------hHhhhCCCC-------CCceEEEcccCcc
Q 030025 12 ILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-P-------HVIQHSPEY-------PGVKHVGGDMFQS 76 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~-------~~~~~a~~~-------~~i~~~~~d~~~~ 76 (184)
+.+.+. ..+..+|||+|||+|..+..+++. ..+++++|. + .+++.++++ ++++++.+|+.+.
T Consensus 75 l~~a~~-~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~ 151 (258)
T 2r6z_A 75 IAKAVN-HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQ 151 (258)
T ss_dssp HHHHTT-GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHH
T ss_pred HHHHhC-cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHH
Confidence 444444 556789999999999999999986 568999999 8 888888654 3599999999762
Q ss_pred ---CC---CC-CEEEechhhhcCC------------------hHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 77 ---VP---NG-DAILIKWILHDWS------------------DEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 77 ---~~---~~-D~i~~~~~l~~~~------------------~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
++ .. |+|++.-.+++.. +++...+++.+.++.+. ++++..+..
T Consensus 152 l~~~~~~~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~--~vvvk~p~~ 219 (258)
T 2r6z_A 152 MPALVKTQGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK--RVVVKRPRL 219 (258)
T ss_dssp HHHHHHHHCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS--EEEEEEETT
T ss_pred HHhhhccCCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc--EEEEEcCCC
Confidence 33 33 9999865544321 12344667777777643 567766554
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-08 Score=84.40 Aligned_cols=95 Identities=16% Similarity=0.065 Sum_probs=65.9
Q ss_pred CCCeEEEecCCcChHHHHHHhhC-------------CCCeEEEeec-hhHhhhCCC-----C-CCceEEEcccCc-cC--
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKY-------------PHIKGINFDL-PHVIQHSPE-----Y-PGVKHVGGDMFQ-SV-- 77 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~-------------~~~~~~~~D~-~~~~~~a~~-----~-~~i~~~~~d~~~-~~-- 77 (184)
+...|||||||+|-++...+... ...++++++. +.+....+. . ++|+++.+|+++ ..
T Consensus 409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhccccc
Confidence 35689999999999964332221 2358999998 544332222 1 569999999998 44
Q ss_pred ----CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEE
Q 030025 78 ----PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 78 ----~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~ 115 (184)
+.. |+||+.+.-.....+-..++|..+.+.|||||.++
T Consensus 489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 344 99999776444333333468888899999999865
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-08 Score=79.10 Aligned_cols=92 Identities=12% Similarity=0.008 Sum_probs=71.4
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---C------------------CceEEEcccCcc--
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---P------------------GVKHVGGDMFQS-- 76 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~------------------~i~~~~~d~~~~-- 76 (184)
+..+|||+|||+|..+..++++.+..+++++|+ +.+++.++++ + +++++.+|+.+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 478999999999999999999987789999999 8888777643 2 378899998762
Q ss_pred -CCCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 77 -VPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 77 -~~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.+.. |+|++. ... .. ..+++.+.+.|+|||.++++-
T Consensus 127 ~~~~~fD~I~lD-P~~---~~--~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLD-PFG---SP--MEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEEC-CSS---CC--HHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeC-CCC---CH--HHHHHHHHHhcCCCCEEEEEe
Confidence 2333 999853 222 11 368999999999999887754
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=6e-08 Score=81.09 Aligned_cols=115 Identities=14% Similarity=0.037 Sum_probs=82.8
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC----------------------------------------
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY---------------------------------------- 43 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~---------------------------------------- 43 (184)
....++..++.... +.+..+|+|.+||+|.++...+...
T Consensus 174 l~e~LAa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~ 252 (703)
T 3v97_A 174 IKETLAAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL 252 (703)
T ss_dssp SCHHHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence 34567888888877 8888999999999999998877642
Q ss_pred --CCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c--CCC-C-CEEEechhhhc-CC-hHHHHHHHHH---
Q 030025 44 --PHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S--VPN-G-DAILIKWILHD-WS-DEHCLKLLKN--- 103 (184)
Q Consensus 44 --~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~--~~~-~-D~i~~~~~l~~-~~-~~~~~~~l~~--- 103 (184)
+..+++|+|+ +.+++.|+.+ ..+++.++|+.+ . .+. . |+|+++-.... +. .++...+++.
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~ 332 (703)
T 3v97_A 253 AEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGR 332 (703)
T ss_dssp HHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHH
T ss_pred ccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHH
Confidence 2368999999 9999988875 348999999987 2 222 3 99999765543 22 2233344444
Q ss_pred HHhhCCCCcEEEEEee
Q 030025 104 CHKSIPEGGKVIVVES 119 (184)
Q Consensus 104 ~~~~L~pgG~l~i~~~ 119 (184)
..+.+.|||.+++...
T Consensus 333 ~lk~~~~g~~~~ilt~ 348 (703)
T 3v97_A 333 IMKNQFGGWNLSLFSA 348 (703)
T ss_dssp HHHHHCTTCEEEEEES
T ss_pred HHHhhCCCCeEEEEeC
Confidence 4444568999988654
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-08 Score=81.29 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=82.8
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC------------------CCeEEEeec-hhHhhhCCCC---
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP------------------HIKGINFDL-PHVIQHSPEY--- 63 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~------------------~~~~~~~D~-~~~~~~a~~~--- 63 (184)
..+++.|++.+. ..+..+|+|.|||+|.++..+++... ...++|+|+ +.+++.|+..
T Consensus 155 ~~iv~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l 233 (541)
T 2ar0_A 155 RPLIKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL 233 (541)
T ss_dssp HHHHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH
Confidence 456677777776 56678999999999999988876531 247999999 8888877542
Q ss_pred ---CC-----ceEEEcccCc-c-CC--CCCEEEechhhhcCCh------------HHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 64 ---PG-----VKHVGGDMFQ-S-VP--NGDAILIKWILHDWSD------------EHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 64 ---~~-----i~~~~~d~~~-~-~~--~~D~i~~~~~l~~~~~------------~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.+ +.+.++|... + .+ ..|+|+++-.+..... .....++..+.+.|+|||++.+.-+
T Consensus 234 ~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 234 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 33 7889999876 3 22 2399999765554211 1123789999999999999988654
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3e-08 Score=77.31 Aligned_cols=93 Identities=14% Similarity=0.091 Sum_probs=71.8
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCC-CeEEEeec-hhHhhhCCCC------CC--ceEEEcccCcc----CCCC-CEEE
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPH-IKGINFDL-PHVIQHSPEY------PG--VKHVGGDMFQS----VPNG-DAIL 84 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~------~~--i~~~~~d~~~~----~~~~-D~i~ 84 (184)
.+..+|||++||+|.++..++++..+ .+++++|+ +.+++.++++ .+ ++++.+|+.+. .+.. |+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 35689999999999999999998654 58999999 8888888764 23 88999998762 2233 9998
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+.- . ... ..+++.+.+.|+|||.|+++-
T Consensus 131 lDP-~---g~~--~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP-F---GTP--VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC-S---SCC--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC-C---cCH--HHHHHHHHHHhCCCCEEEEEe
Confidence 854 1 211 258999999999999887755
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.1e-07 Score=67.06 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=68.4
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEc--ccCccCCC-C
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGG--DMFQSVPN-G 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~--d~~~~~~~-~ 80 (184)
...+.+. .-+.+..+|||+||++|.++..++++.+...+.++|+ ..+....... .++..... |+..-.+. .
T Consensus 70 L~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~ 148 (300)
T 3eld_A 70 IRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPS 148 (300)
T ss_dssp HHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCc
Confidence 3444455 4367889999999999999999998766567888988 4432222210 12322222 22221122 3
Q ss_pred CEEEechhhhcCC-----hHHHHHHHHHHHhhCCCC-cEEEEEe
Q 030025 81 DAILIKWILHDWS-----DEHCLKLLKNCHKSIPEG-GKVIVVE 118 (184)
Q Consensus 81 D~i~~~~~l~~~~-----~~~~~~~l~~~~~~L~pg-G~l~i~~ 118 (184)
|+|++..+.. -+ ......+|+-+.++|+|| |.+++--
T Consensus 149 DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~Kv 191 (300)
T 3eld_A 149 DTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKV 191 (300)
T ss_dssp SEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred CEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 9999966655 22 112235688889999999 9999853
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=5.5e-07 Score=64.65 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=75.9
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhh---CCCC--CCceEEEc-ccCc-cC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQH---SPEY--PGVKHVGG-DMFQ-SV 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~---a~~~--~~i~~~~~-d~~~-~~ 77 (184)
..=...+.+.+. +.+..+|+|+||++|.++..++......++.++|+ ..-.+. .+.+ +.++|..+ |+.. +.
T Consensus 64 ~~KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~ 142 (267)
T 3p8z_A 64 SAKLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP 142 (267)
T ss_dssp HHHHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC
T ss_pred HHHHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC
Confidence 334566777776 88889999999999999998888876668999998 332221 1222 78999999 8765 32
Q ss_pred CCCCEEEechhhhcC----ChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 78 PNGDAILIKWILHDW----SDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 78 ~~~D~i~~~~~l~~~----~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
...|+|+|.-.=..- +.....++|+-+.++|++ |-+++
T Consensus 143 ~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 143 EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence 234999884433221 111223578888999999 77777
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-06 Score=72.46 Aligned_cols=114 Identities=8% Similarity=0.019 Sum_probs=75.6
Q ss_pred HHhHHHHHHH----hc-CCCCCCeEEEecCCcChHHHHHHhhCC---CCeEEEeec-hhHhhhC--CC----------CC
Q 030025 6 TLVLQKILEA----YK-GFEHIKQLVDVGGSLGNTLKAITSKYP---HIKGINFDL-PHVIQHS--PE----------YP 64 (184)
Q Consensus 6 ~~~~~~l~~~----~~-~~~~~~~ilDiG~G~G~~~~~l~~~~~---~~~~~~~D~-~~~~~~a--~~----------~~ 64 (184)
..++..|++. ++ ...+..+|||.|||+|.++..++++.+ ..+++|+|+ +.+++.| +. ..
T Consensus 301 ~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~ 380 (878)
T 3s1s_A 301 IELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNN 380 (878)
T ss_dssp HHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTB
T ss_pred HHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCC
Confidence 3455555554 22 134578999999999999999998764 358999999 8777766 21 12
Q ss_pred CceEEEcccCcc--CC-C-CCEEEechhhhc-CC-hHH-------------------------HHHHHHHHHhhCCCCcE
Q 030025 65 GVKHVGGDMFQS--VP-N-GDAILIKWILHD-WS-DEH-------------------------CLKLLKNCHKSIPEGGK 113 (184)
Q Consensus 65 ~i~~~~~d~~~~--~~-~-~D~i~~~~~l~~-~~-~~~-------------------------~~~~l~~~~~~L~pgG~ 113 (184)
...+...|+..+ .+ . .|+|+++-.+.. .. +.+ ...++..+.+.|+|||+
T Consensus 381 ~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGr 460 (878)
T 3s1s_A 381 APTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTV 460 (878)
T ss_dssp CCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCE
T ss_pred cceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcE
Confidence 235566666652 11 2 399999665521 11 110 23478889999999999
Q ss_pred EEEEee
Q 030025 114 VIVVES 119 (184)
Q Consensus 114 l~i~~~ 119 (184)
+.+.-+
T Consensus 461 LAfIlP 466 (878)
T 3s1s_A 461 ISAIMP 466 (878)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 998654
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-06 Score=63.97 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=67.7
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hh--HhhhCCCCCCc---eEEEc-ccCccCCC-
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PH--VIQHSPEYPGV---KHVGG-DMFQSVPN- 79 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~--~~~~a~~~~~i---~~~~~-d~~~~~~~- 79 (184)
=..+|.+..- +.+..+|+|+||+.|.++...+++-.-..+.|.++ .+ +.......+++ .+.++ |+.+..+.
T Consensus 61 KL~EIdeK~l-ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~ 139 (269)
T 2px2_A 61 KLRWLVERRF-VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEI 139 (269)
T ss_dssp HHHHHHHTTS-CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHHHcCC-CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCCC
Confidence 3456666764 88999999999999999999888622223344444 22 11111111455 44447 99873333
Q ss_pred CCEEEechhhh---c-CChHHHHHHHHHHHhhCCCCc-EEEEEee
Q 030025 80 GDAILIKWILH---D-WSDEHCLKLLKNCHKSIPEGG-KVIVVES 119 (184)
Q Consensus 80 ~D~i~~~~~l~---~-~~~~~~~~~l~~~~~~L~pgG-~l~i~~~ 119 (184)
.|+|+|--+-. . .+......+|+-+.++|+||| .+++--.
T Consensus 140 ~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 140 SDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 49999854332 1 111122235777789999999 8888443
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-06 Score=57.74 Aligned_cols=96 Identities=14% Similarity=0.075 Sum_probs=65.1
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcC-hHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCC----CCC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLG-NTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVP----NGD 81 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G-~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~----~~D 81 (184)
++.-|.+.+ .+..+|||||||.| ..+..|++.. +..++++|+ +..++ ++..|++++.. .+|
T Consensus 25 LaeYI~~~~---~~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~D 91 (153)
T 2k4m_A 25 LAVYIIRCS---GPGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAA 91 (153)
T ss_dssp HHHHHHHHS---CSSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEE
T ss_pred HHHHHHhcC---CCCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc---------eEEccCCCCcccccCCcC
Confidence 344444443 34579999999999 5998888743 678999998 65554 89999998543 349
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
+|++...- +|.+..+-++.+.. |.-++|.-...+.
T Consensus 92 LIYsirPP-----~El~~~i~~lA~~v--~adliI~pL~~E~ 126 (153)
T 2k4m_A 92 LIYSIRPP-----AEIHSSLMRVADAV--GARLIIKPLTGED 126 (153)
T ss_dssp EEEEESCC-----TTTHHHHHHHHHHH--TCEEEEECBTTBC
T ss_pred EEEEcCCC-----HHHHHHHHHHHHHc--CCCEEEEcCCCCc
Confidence 99885543 34444555566654 6668876544433
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.7e-07 Score=62.82 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=63.2
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---------CCceEEEcccCcc-------------
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---------PGVKHVGGDMFQS------------- 76 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---------~~i~~~~~d~~~~------------- 76 (184)
.+.++|||+|| |+.+..+++. ++.+++.+|. +...+.++++ .+++++.+|+.+.
T Consensus 29 ~~a~~VLEiGt--GySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGS--GGSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESC--SHHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECc--hHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 46789999998 5677777764 4789999998 7777776542 3588999985421
Q ss_pred -----------CC--C-CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 77 -----------VP--N-GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 77 -----------~~--~-~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.+ . .|+|++-.-.. ...+..+.+.|+|||.+++-+
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k~-------~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRFR-------VGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSSH-------HHHHHHHHHHCSSCEEEEETT
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCCc-------hhHHHHHHHhcCCCeEEEEeC
Confidence 11 2 39999965321 255667789999999986633
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-07 Score=87.45 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=68.6
Q ss_pred CCCeEEEecCCcChHHHHHHhhCC-----CCeEEEeec-hhHhhhCCCC-C--CceEEEcccCcc---CCC-CCEEEech
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYP-----HIKGINFDL-PHVIQHSPEY-P--GVKHVGGDMFQS---VPN-GDAILIKW 87 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~-----~~~~~~~D~-~~~~~~a~~~-~--~i~~~~~d~~~~---~~~-~D~i~~~~ 87 (184)
+..+|||||.|+|..+..+++... ..+++..|+ +.+.+.++++ . ++..-..|..++ .+. +|+|+..+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 467999999999988877776642 236888898 7777777765 1 222222333332 222 39999999
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCce
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSG 167 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 167 (184)
++|--++. ...+++++++|||||++++.+....... .....+ .... ........+.++|.++|+++||+.
T Consensus 1320 vl~~t~~~--~~~l~~~~~lL~p~G~l~~~e~~~~~~~-g~~~~~----~~~~---~r~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A 1320 ALATLGDP--AVAVGNMAATLKEGGFLLLHTLLAGHPL-GEMVGF----LTSP---EQGGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred cccccccH--HHHHHHHHHhcCCCcEEEEEeccccccc-cccccc----cccc---cccCCcccCHHHHHHHHHhCCCce
Confidence 99854433 4689999999999999999775321100 000000 0000 000112346788999999999998
Q ss_pred eEEEe
Q 030025 168 IRFVC 172 (184)
Q Consensus 168 i~~~~ 172 (184)
+....
T Consensus 1390 ~~~~~ 1394 (2512)
T 2vz8_A 1390 VALKR 1394 (2512)
T ss_dssp EEEEE
T ss_pred eeecc
Confidence 76643
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-07 Score=70.03 Aligned_cols=79 Identities=10% Similarity=0.151 Sum_probs=58.0
Q ss_pred HHHHHHhcCCCCC--CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhH-------hhhCCCC--------CCceEEEc
Q 030025 10 QKILEAYKGFEHI--KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHV-------IQHSPEY--------PGVKHVGG 71 (184)
Q Consensus 10 ~~l~~~~~~~~~~--~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~-------~~~a~~~--------~~i~~~~~ 71 (184)
+.+.+.+. +.+. .+|||++||+|..+..++++ ..+++++|. +.+ ++.+++. .+++++.+
T Consensus 76 e~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~ 152 (258)
T 2oyr_A 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (258)
T ss_dssp SHHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred HHHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEEC
Confidence 45556665 6666 89999999999999999998 458999998 644 3333211 36899999
Q ss_pred ccCcc---CCCC-CEEEechhhhc
Q 030025 72 DMFQS---VPNG-DAILIKWILHD 91 (184)
Q Consensus 72 d~~~~---~~~~-D~i~~~~~l~~ 91 (184)
|..+. ++.. |+|++.-.+.+
T Consensus 153 D~~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 153 SSLTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp CHHHHSTTCSSCCSEEEECCCCCC
T ss_pred CHHHHHHhCcccCCEEEEcCCCCC
Confidence 98762 3334 99999777655
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-07 Score=77.19 Aligned_cols=113 Identities=11% Similarity=0.102 Sum_probs=77.9
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC---------------CCeEEEeec-hhHhhhCCCC-----
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP---------------HIKGINFDL-PHVIQHSPEY----- 63 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~---------------~~~~~~~D~-~~~~~~a~~~----- 63 (184)
...+++.|++.+. .. ..+|+|.+||+|.++..+++... ...+.|+|+ +.+...|+.+
T Consensus 230 P~~Vv~lmv~ll~-p~-~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g 307 (544)
T 3khk_A 230 PKSIVTLIVEMLE-PY-KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG 307 (544)
T ss_dssp CHHHHHHHHHHHC-CC-SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHh-cC-CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC
Confidence 4566777777776 33 34999999999999888765431 468999999 8888877642
Q ss_pred --CCceEEEcccCc-c-CCC-C-CEEEechhhhc--CCh-----------------------H--HHHHHHHHHHhhCCC
Q 030025 64 --PGVKHVGGDMFQ-S-VPN-G-DAILIKWILHD--WSD-----------------------E--HCLKLLKNCHKSIPE 110 (184)
Q Consensus 64 --~~i~~~~~d~~~-~-~~~-~-D~i~~~~~l~~--~~~-----------------------~--~~~~~l~~~~~~L~p 110 (184)
.++.+.++|... + .+. . |+|+++-.+.. +.. . ....++..+.+.|+|
T Consensus 308 i~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~ 387 (544)
T 3khk_A 308 IDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP 387 (544)
T ss_dssp CCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE
T ss_pred CCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc
Confidence 234447788765 3 222 3 99998655442 110 0 112589999999999
Q ss_pred CcEEEEEee
Q 030025 111 GGKVIVVES 119 (184)
Q Consensus 111 gG~l~i~~~ 119 (184)
||++.+.-+
T Consensus 388 gGr~aiVlP 396 (544)
T 3khk_A 388 TGSMALLLA 396 (544)
T ss_dssp EEEEEEEEE
T ss_pred CceEEEEec
Confidence 999888654
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.5e-06 Score=64.83 Aligned_cols=70 Identities=13% Similarity=0.091 Sum_probs=56.4
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCc-cCCC-C-CEEEechhhh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQ-SVPN-G-DAILIKWILH 90 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~~~-~-D~i~~~~~l~ 90 (184)
+.+..++||+||+.|.++..++++ +.+++++|...|-......++|.+++.|... ..+. . |+|+|-.+.+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~ 281 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK 281 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC
Confidence 567899999999999999999988 5799999985555555566899999999987 3333 3 9999976653
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.6e-06 Score=61.81 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=73.3
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhh---hCCCC--CCceEEEc-ccCc-cCCC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQ---HSPEY--PGVKHVGG-DMFQ-SVPN 79 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~---~a~~~--~~i~~~~~-d~~~-~~~~ 79 (184)
=...+.+... +.+...|||+||++|.++..++.......+.++|+ ..-.+ ..++. +.+.+..+ |+.. +...
T Consensus 82 KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~ 160 (321)
T 3lkz_A 82 KLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC 160 (321)
T ss_dssp HHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCC
Confidence 3556667766 88888999999999999998888765567999998 33111 11122 44778777 7665 2223
Q ss_pred CCEEEechhhhcCChH-----HHHHHHHHHHhhCCCC-cEEEE
Q 030025 80 GDAILIKWILHDWSDE-----HCLKLLKNCHKSIPEG-GKVIV 116 (184)
Q Consensus 80 ~D~i~~~~~l~~~~~~-----~~~~~l~~~~~~L~pg-G~l~i 116 (184)
.|+|+|.-. .--+.+ ...++|+-+.++|++| |-+++
T Consensus 161 ~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 161 CDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 499988554 322221 2235788889999999 88887
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.4e-06 Score=64.68 Aligned_cols=145 Identities=14% Similarity=0.060 Sum_probs=93.3
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCC---------CCCceEEEcccCccC----------CCC
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPE---------YPGVKHVGGDMFQSV----------PNG 80 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~----------~~~ 80 (184)
.+...|+++|||.-.....+.. .+.++++.+|.|.+++..++ .++..++..|+.+.+ ++.
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 3456899999999988766542 22489999998766654432 256788999987521 112
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhh-hhHhhhh------CCCccc-c
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLA-DVLVMTQ------YPGGKE-R 151 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~-~ 151 (184)
-++++..+++++++++...+++.+...+.||+.+++... .++... .......+. ....... ...... .
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~-~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 256 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS-PLHGDE--WREQMQLRFRRVSDALGFEQAVDVQELIYHD 256 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC-CTTCSH--HHHHHHHHHHHHHC-----------CCTTCC
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEec-CCCCcc--hhHHHHHHHHHHHHHcCCcCCCCccccccCC
Confidence 577889999999998888999999999999998877543 222100 000000011 1110000 011222 2
Q ss_pred C-HHHHHHHHHHcCCcee
Q 030025 152 T-KHEFTTLATEAGFSGI 168 (184)
Q Consensus 152 ~-~~~~~~~l~~aGf~~i 168 (184)
+ .++..++|.+.||+.+
T Consensus 257 ~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 257 ENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TTCCCHHHHHTTTTEEEE
T ss_pred CChHHHHHHHHHCcCccc
Confidence 5 7899999999999977
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.7e-06 Score=63.42 Aligned_cols=105 Identities=18% Similarity=0.122 Sum_probs=72.3
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-----CCCeEEEeec-hhH--------------------------h
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-----PHIKGINFDL-PHV--------------------------I 57 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-----~~~~~~~~D~-~~~--------------------------~ 57 (184)
..+++.+.....++.|||+|+..|..+..+++.. ++.+++++|. ..+ +
T Consensus 95 ~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~ 174 (282)
T 2wk1_A 95 RQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSE 174 (282)
T ss_dssp HHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCH
T ss_pred HHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHH
Confidence 3444443323457899999999999999887654 4778999995 322 1
Q ss_pred hhCCC--------CCCceEEEcccCcc---CCC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 58 QHSPE--------YPGVKHVGGDMFQS---VPN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 58 ~~a~~--------~~~i~~~~~d~~~~---~~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+.+++ .++++++.+|+.+. .+. . |+|++-.-.+ +.....|+.+.+.|+|||.+++-+
T Consensus 175 ~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 175 EEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp HHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred HHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcC
Confidence 12222 15799999999873 222 2 8888865432 234578999999999999988844
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.6e-06 Score=68.33 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=80.1
Q ss_pred HHhHHHHHHHhcC---CCCCCeEEEecCCcChHHHHHHhhC---CCCeEEEeec-hhHhhhCCCC--------CCceEEE
Q 030025 6 TLVLQKILEAYKG---FEHIKQLVDVGGSLGNTLKAITSKY---PHIKGINFDL-PHVIQHSPEY--------PGVKHVG 70 (184)
Q Consensus 6 ~~~~~~l~~~~~~---~~~~~~ilDiG~G~G~~~~~l~~~~---~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~ 70 (184)
..+++.|++.+.. ..+..+|+|.+||+|.++..+++.. +...+.|+|+ +.+...|+.+ +++.+..
T Consensus 203 ~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~ 282 (542)
T 3lkd_A 203 QPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHN 282 (542)
T ss_dssp HHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEe
Confidence 4566666666652 1256799999999999999988874 3578999999 8888877642 3567899
Q ss_pred cccCc-cCC---C-C-CEEEechhhhc-C------------------C---hHHHHHHHHHHHhhCC-CCcEEEEEee
Q 030025 71 GDMFQ-SVP---N-G-DAILIKWILHD-W------------------S---DEHCLKLLKNCHKSIP-EGGKVIVVES 119 (184)
Q Consensus 71 ~d~~~-~~~---~-~-D~i~~~~~l~~-~------------------~---~~~~~~~l~~~~~~L~-pgG~l~i~~~ 119 (184)
+|... +++ . . |+|+++-.+.. + + ..+ ..++..+.+.|+ |||++.+.-+
T Consensus 283 gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 283 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp SCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEEEE
T ss_pred cceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEEec
Confidence 99876 332 2 2 99998633321 1 0 111 258999999999 9999988554
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=7e-07 Score=68.91 Aligned_cols=108 Identities=16% Similarity=0.090 Sum_probs=75.8
Q ss_pred HHHHHHHhcC-CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------------CCceEEEcc
Q 030025 9 LQKILEAYKG-FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------------PGVKHVGGD 72 (184)
Q Consensus 9 ~~~l~~~~~~-~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------------~~i~~~~~d 72 (184)
..+++-+.+. ..++++||=||.|.|..++.+++. +..+++.+|+ +.+++.++++ ++++++.+|
T Consensus 192 Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~D 270 (381)
T 3c6k_A 192 YTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIED 270 (381)
T ss_dssp HHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESC
T ss_pred HHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHH
Confidence 4444444442 235689999999999999999985 4579999999 9998887653 458889999
Q ss_pred cCccC------C-CCCEEEechhhh-------cCCh-HHHHHHHHHHHhhCCCCcEEEEE
Q 030025 73 MFQSV------P-NGDAILIKWILH-------DWSD-EHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 73 ~~~~~------~-~~D~i~~~~~l~-------~~~~-~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
..+.+ . .+|+|+.-..-. .... .-..++++.+++.|+|||.++..
T Consensus 271 a~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 271 CIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 87521 1 239998853211 1111 11247899999999999998874
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00016 Score=55.10 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=100.4
Q ss_pred CCCeEEEecCCcChHHHHHHhh-CCCCeEEEeechhHhhhCC-----------------------------CCCCceEEE
Q 030025 21 HIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDLPHVIQHSP-----------------------------EYPGVKHVG 70 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~~~~~~~a~-----------------------------~~~~i~~~~ 70 (184)
+...|+-+|||.-.....+... .+.+++..+|.|++++.-+ ..++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999999999888875 3678999999866554311 025678899
Q ss_pred cccCc--cC---------C-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhh
Q 030025 71 GDMFQ--SV---------P-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLA 137 (184)
Q Consensus 71 ~d~~~--~~---------~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~ 137 (184)
.|+.+ .+ . +. -++++.+++.+++.++...+|+.+.+.. |+|.+++.|+..++.. ....+.
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~d~------fg~~M~ 242 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMGDR------FGQIMI 242 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTTSH------HHHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCCCH------HHHHHH
Confidence 99876 22 1 12 5788999999999999999999999987 5667777787754321 101111
Q ss_pred hhHhhhhC--CCc-cccCHHHHHHHHHHcCCceeEEEee
Q 030025 138 DVLVMTQY--PGG-KERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 138 ~~~~~~~~--~~~-~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
........ .+. .+.+.++..++|+++||+.++....
T Consensus 243 ~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 243 ENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 11100000 111 3458899999999999998776543
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.18 E-value=9.6e-07 Score=69.13 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=52.9
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCcc--C---CCCCEEE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQS--V---PNGDAIL 84 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~~--~---~~~D~i~ 84 (184)
+.+..+|||+|||+|..+..+++. ..+++++|. +.+++.|+++ .+++++++|+.+. . ...|+|+
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~ 168 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY 168 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred cCCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEE
Confidence 344789999999999999988887 469999999 8899888654 3589999999873 1 1239998
Q ss_pred ec
Q 030025 85 IK 86 (184)
Q Consensus 85 ~~ 86 (184)
+.
T Consensus 169 lD 170 (410)
T 3ll7_A 169 VD 170 (410)
T ss_dssp EC
T ss_pred EC
Confidence 83
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.6e-06 Score=62.34 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=63.7
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--CCceEEEcccCc-c--C-
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--PGVKHVGGDMFQ-S--V- 77 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--~~i~~~~~d~~~-~--~- 77 (184)
..-+.+.+++.+. ..+++.++|.+||.|..+..++++ +.+++++|. +.+++.+++. +++.++++++.+ . +
T Consensus 7 ~pVLl~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~ 83 (285)
T 1wg8_A 7 VPVLYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLA 83 (285)
T ss_dssp CCTTHHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHH
T ss_pred hhHHHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHH
Confidence 3456888999998 888999999999999999999998 679999999 8888766442 579999999876 1 1
Q ss_pred --C-CC-CEEEec
Q 030025 78 --P-NG-DAILIK 86 (184)
Q Consensus 78 --~-~~-D~i~~~ 86 (184)
+ .. |.|++.
T Consensus 84 ~~g~~~vDgIL~D 96 (285)
T 1wg8_A 84 ALGVERVDGILAD 96 (285)
T ss_dssp HTTCSCEEEEEEE
T ss_pred HcCCCCcCEEEeC
Confidence 1 23 888764
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=8e-05 Score=62.31 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=98.5
Q ss_pred CCCeEEEecCCcChHHHHHHhhCC--------CCeEEEeechhHhhhCCCC-----------------------------
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYP--------HIKGINFDLPHVIQHSPEY----------------------------- 63 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~--------~~~~~~~D~~~~~~~a~~~----------------------------- 63 (184)
+...|+-+|||.-....++....+ .+++..+|.|+.++.-++.
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 568999999999999999987754 6789999976554321110
Q ss_pred -CCceEEEcccCc--cC----------C-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCC
Q 030025 64 -PGVKHVGGDMFQ--SV----------P-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENG 128 (184)
Q Consensus 64 -~~i~~~~~d~~~--~~----------~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~ 128 (184)
++..++..|+.+ .+ . +. -++++..++.+++.++...+|+.+.+. |+|.+++.|...+.....+
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEECCTTCTTSH
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEeecCCCCCCh
Confidence 267888999976 21 2 22 577889999999999999999999864 7888888887765421111
Q ss_pred ccccchhhh-hhHhhhh-CCC-ccccCHHHHHHHHHHcCCceeEEEe
Q 030025 129 THSKINSLA-DVLVMTQ-YPG-GKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 129 ~~~~~~~~~-~~~~~~~-~~~-~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
....+. .+..... ... ....+.++..++|.+.||+.+....
T Consensus 265 ---f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~ 308 (695)
T 2zwa_A 265 ---FSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGD 308 (695)
T ss_dssp ---HHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEE
T ss_pred ---HHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceee
Confidence 001111 1111000 000 1234799999999999998766543
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=7e-05 Score=56.24 Aligned_cols=122 Identities=19% Similarity=0.186 Sum_probs=71.9
Q ss_pred CCCeEEEecCCcChHHHHHH----hhCCCCeEEEeec-hhHhhhCCC------------------C--C--CceEEEccc
Q 030025 21 HIKQLVDVGGSLGNTLKAIT----SKYPHIKGINFDL-PHVIQHSPE------------------Y--P--GVKHVGGDM 73 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~----~~~~~~~~~~~D~-~~~~~~a~~------------------~--~--~i~~~~~d~ 73 (184)
+.-+|||+|=|||.+....+ +..|..++..+.. ...++.... . . .+++..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 44689999999998764433 3456665544432 111111100 0 1 245677888
Q ss_pred Cc---cCCC-C-CEEEech-hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCC
Q 030025 74 FQ---SVPN-G-DAILIKW-ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPG 147 (184)
Q Consensus 74 ~~---~~~~-~-D~i~~~~-~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
.+ .++. . |+|+.-. +-..=|+=....+|+.++++++|||+|.-..
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt----------------------------- 226 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS----------------------------- 226 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC-----------------------------
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe-----------------------------
Confidence 76 2333 2 8888733 1111011122478999999999999876411
Q ss_pred ccccCHHHHHHHHHHcCCceeEEEeecC
Q 030025 148 GKERTKHEFTTLATEAGFSGIRFVCFFH 175 (184)
Q Consensus 148 ~~~~~~~~~~~~l~~aGf~~i~~~~~~~ 175 (184)
....+++-|+++||++.+....++
T Consensus 227 ----aag~VRR~L~~aGF~V~k~~G~g~ 250 (308)
T 3vyw_A 227 ----SSLSVRKSLLTLGFKVGSSREIGR 250 (308)
T ss_dssp ----CCHHHHHHHHHTTCEEEEEECC--
T ss_pred ----CcHHHHHHHHHCCCEEEecCCCCC
Confidence 245678889999999777665443
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.84 E-value=2.4e-05 Score=60.07 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=54.8
Q ss_pred cHHhHHHHHHHhcCCCC------CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCC---CCCCceEEEcccC
Q 030025 5 TTLVLQKILEAYKGFEH------IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSP---EYPGVKHVGGDMF 74 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~------~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~---~~~~i~~~~~d~~ 74 (184)
+..++++|++++. +.+ ...|||||+|.|.+|..|+++....+++++++ +.++...+ ..++++++.+|+.
T Consensus 37 d~~i~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l 115 (353)
T 1i4w_A 37 NPTVYNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPY 115 (353)
T ss_dssp CHHHHHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTT
T ss_pred CHHHHHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCcc
Confidence 5678899999987 653 48899999999999999998744457888887 65554333 3478999999997
Q ss_pred c
Q 030025 75 Q 75 (184)
Q Consensus 75 ~ 75 (184)
+
T Consensus 116 ~ 116 (353)
T 1i4w_A 116 D 116 (353)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.78 E-value=7.1e-05 Score=56.80 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=58.0
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC--CCceEEEcccCc
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY--PGVKHVGGDMFQ 75 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~--~~i~~~~~d~~~ 75 (184)
-+.+++++.+. ..+++.++|..||.|..+..++++. |..+++++|. +.+++.++.. +++.++++++.+
T Consensus 44 VLl~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 44 VLLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred ccHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 36788899998 8889999999999999999999984 7889999999 9999887532 568888887765
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=3.9e-05 Score=59.11 Aligned_cols=109 Identities=17% Similarity=0.099 Sum_probs=73.4
Q ss_pred HHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC------------CCCceEEEcccCc--c
Q 030025 12 ILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE------------YPGVKHVGGDMFQ--S 76 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------------~~~i~~~~~d~~~--~ 76 (184)
....+. .+++.+|||+++|.|.-+..+++......++++|+ +.-++..++ ..++.....|... .
T Consensus 140 ~~~~L~-~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~ 218 (359)
T 4fzv_A 140 PVLALG-LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 218 (359)
T ss_dssp HHHHHC-CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH
T ss_pred HHHHhC-CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch
Confidence 344455 77889999999999999999999877678999997 443332221 1467888888776 2
Q ss_pred -CCCC-CEEEec----h----hhh-------cCChH-------HHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 77 -VPNG-DAILIK----W----ILH-------DWSDE-------HCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 77 -~~~~-D~i~~~----~----~l~-------~~~~~-------~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.+.. |.|++- . ++. .+... -..++|+.+.+.|||||+|+-++=..
T Consensus 219 ~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 219 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 2333 888752 2 111 11111 11368899999999999998866433
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00019 Score=53.31 Aligned_cols=103 Identities=15% Similarity=0.190 Sum_probs=64.0
Q ss_pred HHHHHHHhcC----CCCCCeEEEecC------CcChHHHHHHhhCCC-CeEEEeechhHhhhCCCCCCceEEEcccCc-c
Q 030025 9 LQKILEAYKG----FEHIKQLVDVGG------SLGNTLKAITSKYPH-IKGINFDLPHVIQHSPEYPGVKHVGGDMFQ-S 76 (184)
Q Consensus 9 ~~~l~~~~~~----~~~~~~ilDiG~------G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~ 76 (184)
..++++.++. .+...+|||+|+ -.|.+ .+.+..|. ..++++|+.++... .+ .++++|... .
T Consensus 93 ytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sd----a~-~~IqGD~~~~~ 165 (344)
T 3r24_A 93 YTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSD----AD-STLIGDCATVH 165 (344)
T ss_dssp HHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCS----SS-EEEESCGGGEE
T ss_pred HHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccC----CC-eEEEccccccc
Confidence 3456666541 567899999997 45553 33444676 69999998444322 22 448899765 2
Q ss_pred CCCC-CEEEechh---hhcCChH------HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 77 VPNG-DAILIKWI---LHDWSDE------HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 77 ~~~~-D~i~~~~~---l~~~~~~------~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.+.. |+|++--+ -.+...+ -...+++-+.+.|+|||.+++--
T Consensus 166 ~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKV 217 (344)
T 3r24_A 166 TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI 217 (344)
T ss_dssp ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEE
Confidence 2233 99987321 1111111 23356777888999999999953
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.61 E-value=6.2e-05 Score=56.55 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=44.9
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY 63 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~ 63 (184)
...+...++..+. .+...|||++||+|.++..+++. +.+++++|+ +.+++.|+++
T Consensus 221 p~~l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r 276 (297)
T 2zig_A 221 PLELAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKER 276 (297)
T ss_dssp CHHHHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHH
Confidence 3456777777765 56789999999999999988876 468999999 8898887754
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00035 Score=56.61 Aligned_cols=114 Identities=12% Similarity=0.076 Sum_probs=76.4
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-------------CCCeEEEeec-hhHhhhCCCC------C
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-------------PHIKGINFDL-PHVIQHSPEY------P 64 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-------------~~~~~~~~D~-~~~~~~a~~~------~ 64 (184)
.+.+++.|++.+. ..+..+|+|-+||||.++....+.. ....+.|+|+ +.+...|+-+ .
T Consensus 202 P~~Vv~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~ 280 (530)
T 3ufb_A 202 PRPVVRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE 280 (530)
T ss_dssp CHHHHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc
Confidence 4567888888877 6677799999999999988776532 1357899998 7777766532 3
Q ss_pred CceEEEcccCc-cC----C--CCCEEEechhhhc---------CC-----hHHHHHHHHHHHhhCC-------CCcEEEE
Q 030025 65 GVKHVGGDMFQ-SV----P--NGDAILIKWILHD---------WS-----DEHCLKLLKNCHKSIP-------EGGKVIV 116 (184)
Q Consensus 65 ~i~~~~~d~~~-~~----~--~~D~i~~~~~l~~---------~~-----~~~~~~~l~~~~~~L~-------pgG~l~i 116 (184)
...+..+|... +. + ..|+|+++-.+.- ++ ......++..+.+.|| |||++.+
T Consensus 281 ~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~av 360 (530)
T 3ufb_A 281 YPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAV 360 (530)
T ss_dssp CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEE
T ss_pred cccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEE
Confidence 44566777654 22 1 1399998665531 10 1112356777777776 7999988
Q ss_pred Eee
Q 030025 117 VES 119 (184)
Q Consensus 117 ~~~ 119 (184)
.-+
T Consensus 361 VlP 363 (530)
T 3ufb_A 361 VVP 363 (530)
T ss_dssp EEE
T ss_pred Eec
Confidence 654
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0031 Score=42.30 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=68.2
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCC------
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVP------ 78 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~------ 78 (184)
+...+..+.... .-.+.|||+|-|+|.+--.|.+.+|+-++.++|- -.....+ .-+.=.++.+|+.+..+
T Consensus 27 R~~L~~a~~~v~--~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~-~P~~e~~ilGdi~~tL~~~~~r~ 103 (174)
T 3iht_A 27 RACLEHAIAQTA--GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDS-TPPEAQLILGDIRETLPATLERF 103 (174)
T ss_dssp HHHHHHHHHHTT--TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGG-CCCGGGEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCC-CCchHheecccHHHHHHHHHHhc
Confidence 334444455544 5568899999999999999999999999999994 1111110 01456788888877322
Q ss_pred -CC-CEEEechhhhcCC--hHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 79 -NG-DAILIKWILHDWS--DEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 79 -~~-D~i~~~~~l~~~~--~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.. -++..-.-.++-. ......+=.-+..+|.|||.++...+.
T Consensus 104 g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 104 GATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp CSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 11 3333322222211 111122333456788999999887665
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0021 Score=47.13 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=42.6
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE 62 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~ 62 (184)
..+...+++... .+...|||..||+|.++....+. +-+++++|+ +.+++.+++
T Consensus 199 ~~l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~ 252 (260)
T 1g60_A 199 RDLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANF 252 (260)
T ss_dssp HHHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 456777777764 66789999999999999988876 569999999 877776654
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0064 Score=44.54 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=67.0
Q ss_pred CCCCeEEEecCCcChHHHHHHhh-------CCCCeEEEeec-hhHhhh--------------------------------
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSK-------YPHIKGINFDL-PHVIQH-------------------------------- 59 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~-------~~~~~~~~~D~-~~~~~~-------------------------------- 59 (184)
.-++.|+|+|+-.|..+..++.. .+.-++.++|. ..+-+.
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 45689999999999988887653 35679999993 322210
Q ss_pred --CCCC----CCceEEEcccCccC-------CC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 60 --SPEY----PGVKHVGGDMFQSV-------PN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 60 --a~~~----~~i~~~~~d~~~~~-------~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.+.. ++++++.+++.+.+ +. . |++.+-.=. .+.....++.+...|+|||.+++-+.
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhCCCcEEEEcCC
Confidence 0111 57899999997722 22 2 777775532 23445789999999999999999664
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0091 Score=49.88 Aligned_cols=118 Identities=15% Similarity=0.195 Sum_probs=71.4
Q ss_pred CCCeEEEecCCcChHHHHHHhhC-------CC-----CeEEEeec-h---hHhhhC-CC--------------C------
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKY-------PH-----IKGINFDL-P---HVIQHS-PE--------------Y------ 63 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~-------~~-----~~~~~~D~-~---~~~~~a-~~--------------~------ 63 (184)
+.-+|+|+|-|+|.+...+++.+ |. ++++.++. | +.+..+ .. .
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 34689999999999988887753 22 56788774 3 111111 00 0
Q ss_pred ----------CCceEEEcccCc---cCC----CC-CEEEechhh-hcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 64 ----------PGVKHVGGDMFQ---SVP----NG-DAILIKWIL-HDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 64 ----------~~i~~~~~d~~~---~~~----~~-D~i~~~~~l-~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
-.+++..+|+.+ .++ .. |+++.-..- ..=++--...+|..+.++++|||.+.-..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------ 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT------ 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC------
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc------
Confidence 135667788765 222 22 888773311 00011011368999999999999865411
Q ss_pred CCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEE
Q 030025 125 PENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFV 171 (184)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~ 171 (184)
....+++.++++||...+..
T Consensus 212 ---------------------------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 ---------------------------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp ---------------------------CCHHHHHHHHHTTCEEEEEE
T ss_pred ---------------------------CcHHHHHHHHhCCeEEEecc
Confidence 12466788899999877655
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.034 Score=46.30 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=69.3
Q ss_pred CCeEEEecCCcChHHHHHHhhC-------C-----CCeEEEeec-h---hHhhhC-CC--------------C-------
Q 030025 22 IKQLVDVGGSLGNTLKAITSKY-------P-----HIKGINFDL-P---HVIQHS-PE--------------Y------- 63 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~-------~-----~~~~~~~D~-~---~~~~~a-~~--------------~------- 63 (184)
.-+|+|+|-|+|.+....++.+ | .++++.++. | +.+..+ .. .
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 3589999999999888777653 2 245788773 2 222211 11 0
Q ss_pred ---------CCceEEEcccCc---cCC----CC-CEEEechhhhcC-ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCC
Q 030025 64 ---------PGVKHVGGDMFQ---SVP----NG-DAILIKWILHDW-SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELP 125 (184)
Q Consensus 64 ---------~~i~~~~~d~~~---~~~----~~-D~i~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 125 (184)
-.++...+|+.+ .+. .. |+|+.-..--.. ++--...+|+.++++++|||.+....
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------- 219 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT------- 219 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC-------
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc-------
Confidence 113455667654 121 22 888773311000 11112368999999999999876411
Q ss_pred CCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEE
Q 030025 126 ENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFV 171 (184)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~ 171 (184)
....+++.++++||.+....
T Consensus 220 --------------------------~~~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 220 --------------------------SAGFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp --------------------------CCHHHHHHHHHHTCEEEEEE
T ss_pred --------------------------CcHHHHHHHHhCCeEEEecc
Confidence 12466788899999876654
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.14 Score=39.10 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=73.8
Q ss_pred CCeEEEecCCcChHHHHHHhhCCC-CeEEEeec-hhHhhhCCCC-CCceEEEcccCc-c---CC--CCCEEEechhhhcC
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPH-IKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-S---VP--NGDAILIKWILHDW 92 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~---~~--~~D~i~~~~~l~~~ 92 (184)
..+++|+-||.|.++..+.+..-. -.+.++|. +.+++..+.+ ++..++.+|+.+ . ++ ..|+++.......+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 357999999999999999887421 35788898 7777665553 667788899876 2 22 23999886664444
Q ss_pred Ch--------HHHHHHHHH---HHhhCC--CCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 93 SD--------EHCLKLLKN---CHKSIP--EGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 93 ~~--------~~~~~~l~~---~~~~L~--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
+. ++...++.+ +.+.++ |. +++.|....- .. ..+.+.+.+.
T Consensus 82 S~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~l-------------~~-----------~~~~~~i~~~ 135 (343)
T 1g55_A 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGF-------------EV-----------SSTRDLLIQT 135 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCCS--EEEEEEETTG-------------GG-----------SHHHHHHHHH
T ss_pred hhcCCcCCccCccchHHHHHHHHHHHhcCCCC--EEEEeCCccc-------------cC-----------HHHHHHHHHH
Confidence 21 112224443 344455 65 5555644311 00 0135678888
Q ss_pred HHHcCCceeE
Q 030025 160 ATEAGFSGIR 169 (184)
Q Consensus 160 l~~aGf~~i~ 169 (184)
|++.||....
T Consensus 136 l~~~GY~v~~ 145 (343)
T 1g55_A 136 IENCGFQYQE 145 (343)
T ss_dssp HHHTTEEEEE
T ss_pred HHHCCCeeEE
Confidence 9999987653
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.24 Score=38.27 Aligned_cols=120 Identities=13% Similarity=0.095 Sum_probs=75.1
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC-CCCceEEEcccCc-c---C------CCC-CEEEechhh
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE-YPGVKHVGGDMFQ-S---V------PNG-DAILIKWIL 89 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~---~------~~~-D~i~~~~~l 89 (184)
.+++|+-||.|.++..+.+..- -.+.++|. +.+.+..+. .++..++.+|+.+ . + +.. |+|+.....
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~-~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPC 81 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPC 81 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTC-EEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCC
T ss_pred CeEEEEccCcCHHHHHHHHCCC-cEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCC
Confidence 5799999999999999988742 24568888 666655544 3778888899876 1 2 123 999886654
Q ss_pred hcCC-------hHHHHHHHHH---HHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 90 HDWS-------DEHCLKLLKN---CHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 90 ~~~~-------~~~~~~~l~~---~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
..++ +++...++.+ +.+.++|. +++.|....-.. .......+++. .
T Consensus 82 Q~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~--~~v~ENV~gl~s---------------------~~~~~~~~~i~-~ 137 (376)
T 3g7u_A 82 QGFSSIGKGNPDDSRNQLYMHFYRLVSELQPL--FFLAENVPGIMQ---------------------EKYSGIRNKAF-N 137 (376)
T ss_dssp CTTC-------CHHHHHHHHHHHHHHHHHCCS--EEEEEECTTTTC---------------------GGGHHHHHHHH-H
T ss_pred CCcccccCCCCCCchHHHHHHHHHHHHHhCCC--EEEEecchHhhc---------------------cCcHHHHHHHH-H
Confidence 4443 1222234443 44446886 677675432110 00011346667 8
Q ss_pred HHHcCCce
Q 030025 160 ATEAGFSG 167 (184)
Q Consensus 160 l~~aGf~~ 167 (184)
|++.||.+
T Consensus 138 l~~~GY~v 145 (376)
T 3g7u_A 138 LVSGDYDI 145 (376)
T ss_dssp HHHTTEEE
T ss_pred HHcCCCcc
Confidence 89999886
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.25 Score=37.64 Aligned_cols=96 Identities=9% Similarity=0.023 Sum_probs=61.2
Q ss_pred HHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCC-eEEEeec-hhHhhhCCCCCCceEEEcc------cCcc----CCCC
Q 030025 14 EAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHI-KGINFDL-PHVIQHSPEYPGVKHVGGD------MFQS----VPNG 80 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~i~~~~~d------~~~~----~~~~ 80 (184)
+... +.+..+||-+|+|. |..+..+++.. +. +++++|. +.-++.+++..--..+..+ ..+. .+..
T Consensus 165 ~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g 242 (356)
T 1pl8_A 165 RRGG-VTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK 242 (356)
T ss_dssp HHHT-CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred HhcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCC
Confidence 4445 78889999999874 78888888876 45 8999987 6556666544211222211 1111 1123
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
|+|+-... .+ ..++...+.|+|||++++...
T Consensus 243 ~D~vid~~g-----~~---~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 243 PEVTIECTG-----AE---ASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CSEEEECSC-----CH---HHHHHHHHHSCTTCEEEECSC
T ss_pred CCEEEECCC-----Ch---HHHHHHHHHhcCCCEEEEEec
Confidence 88865322 22 357888999999999998654
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.079 Score=41.44 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=34.6
Q ss_pred CCCCCeEEEecCCcChHHHHHH-hhCCC-CeEEEeec-hhHhhhCC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAIT-SKYPH-IKGINFDL-PHVIQHSP 61 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~-~~~~~-~~~~~~D~-~~~~~~a~ 61 (184)
+++...++|||++.|.++..++ +..+. .++++++. |...+..+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~ 269 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQ 269 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 4678999999999999999988 55654 79999997 76655543
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.25 Score=37.14 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=53.3
Q ss_pred CeEEEecCCc--ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCCCEEEechhhhcCChHHHH
Q 030025 23 KQLVDVGGSL--GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNGDAILIKWILHDWSDEHCL 98 (184)
Q Consensus 23 ~~ilDiG~G~--G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~~~l~~~~~~~~~ 98 (184)
.+|.=||+|. +.++..+.+.....++++.|. +..++.+.+..-+.-...|..+ ....+|+|+..-... ...
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~-----~~~ 108 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-----TFR 108 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGG-----GHH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHH-----HHH
Confidence 6899999772 344455555432238999998 6666655443222222233333 334459998854433 345
Q ss_pred HHHHHHHhhCCCCcEEE
Q 030025 99 KLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 99 ~~l~~~~~~L~pgG~l~ 115 (184)
.+++++...++||..++
T Consensus 109 ~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 109 EIAKKLSYILSEDATVT 125 (314)
T ss_dssp HHHHHHHHHSCTTCEEE
T ss_pred HHHHHHhhccCCCcEEE
Confidence 78899999999987554
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.076 Score=40.37 Aligned_cols=95 Identities=19% Similarity=0.082 Sum_probs=62.4
Q ss_pred HHHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCC-CEEEechhh
Q 030025 13 LEAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNG-DAILIKWIL 89 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~-D~i~~~~~l 89 (184)
+.... +.+..+||-+|+|. |..+..+++.. +.++++++. +.-++.+++.. ...+..|. +.+... |+|+-...
T Consensus 169 l~~~~-~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lG-a~~v~~~~-~~~~~~~D~vid~~g- 243 (348)
T 3two_A 169 LKFSK-VTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMG-VKHFYTDP-KQCKEELDFIISTIP- 243 (348)
T ss_dssp HHHTT-CCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTT-CSEEESSG-GGCCSCEEEEEECCC-
T ss_pred HHhcC-CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcC-CCeecCCH-HHHhcCCCEEEECCC-
Confidence 34445 78899999999874 78888888876 569999986 66666665543 22222222 222224 87765322
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.+ ..++.+.+.|+|+|++++...
T Consensus 244 ----~~---~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 244 ----TH---YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp ----SC---CCHHHHHTTEEEEEEEEECCC
T ss_pred ----cH---HHHHHHHHHHhcCCEEEEECC
Confidence 11 247788899999999998653
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.073 Score=39.43 Aligned_cols=95 Identities=13% Similarity=-0.047 Sum_probs=67.3
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc----cCC--C-CCEEEechhh
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ----SVP--N-GDAILIKWIL 89 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~----~~~--~-~D~i~~~~~l 89 (184)
...+||+=+|||.++..+++. .-+++.+|. +...+..+++ .++.++..|... ..+ . .|+|++-=..
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 567899999999999999984 468999998 7777666654 578999999765 112 2 3999986555
Q ss_pred hcCChHHHHHHHHHHHh--hCCCCcEEEEEeee
Q 030025 90 HDWSDEHCLKLLKNCHK--SIPEGGKVIVVESV 120 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~--~L~pgG~l~i~~~~ 120 (184)
+.- .+..++++.+.+ .+.|+|.+++-=+.
T Consensus 170 e~k--~~~~~vl~~L~~~~~r~~~Gi~v~WYPi 200 (283)
T 2oo3_A 170 ERK--EEYKEIPYAIKNAYSKFSTGLYCVWYPV 200 (283)
T ss_dssp CST--THHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CCC--cHHHHHHHHHHHhCccCCCeEEEEEEec
Confidence 421 233456666655 46789998885444
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.24 Score=38.37 Aligned_cols=100 Identities=10% Similarity=-0.022 Sum_probs=63.9
Q ss_pred HHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCC-eEEEeec-hhHhhhCCCCCCceEEEc---cc-Ccc----CCC-C-
Q 030025 14 EAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHI-KGINFDL-PHVIQHSPEYPGVKHVGG---DM-FQS----VPN-G- 80 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~i~~~~~---d~-~~~----~~~-~- 80 (184)
.... +++..+||-+|+|. |..+..+++.. .+ +++++|. +.-++.+++.. .+.+.. |. .+. .+. .
T Consensus 179 ~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lG-a~~i~~~~~~~~~~~~~~~~~g~g~ 255 (398)
T 2dph_A 179 VSAG-VKPGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLSDAG-FETIDLRNSAPLRDQIDQILGKPEV 255 (398)
T ss_dssp HHTT-CCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHTTT-CEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred HHcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcC-CcEEcCCCcchHHHHHHHHhCCCCC
Confidence 4445 78889999999875 88888888875 45 8999997 66777776552 333321 11 110 012 3
Q ss_pred CEEEechhhhc---------CChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 81 DAILIKWILHD---------WSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 81 D~i~~~~~l~~---------~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
|+|+-...-.. .+.+ ..++.+.+.|+|||++++...
T Consensus 256 Dvvid~~g~~~~~~~~~~~~~~~~---~~~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 256 DCGVDAVGFEAHGLGDEANTETPN---GALNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp EEEEECSCTTCBCSGGGTTSBCTT---HHHHHHHHHEEEEEEEECCSC
T ss_pred CEEEECCCCccccccccccccccH---HHHHHHHHHHhcCCEEEEecc
Confidence 88765433211 1111 358889999999999987654
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.088 Score=40.38 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=60.9
Q ss_pred HHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc---ccCc---cC-CCC-CEE
Q 030025 14 EAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG---DMFQ---SV-PNG-DAI 83 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~---d~~~---~~-~~~-D~i 83 (184)
+... +++..+||-+|+|. |..+..+++.....+++++|. +.-++.+++..--..+.. |..+ .. +.. |+|
T Consensus 184 ~~~~-~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~v 262 (371)
T 1f8f_A 184 NALK-VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFA 262 (371)
T ss_dssp TTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred hccC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEE
Confidence 3444 77889999999885 778888887753236888986 666666654321112211 1111 11 113 777
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+-... .+ ..++.+.+.|+|+|++++....
T Consensus 263 id~~g-----~~---~~~~~~~~~l~~~G~iv~~G~~ 291 (371)
T 1f8f_A 263 LESTG-----SP---EILKQGVDALGILGKIAVVGAP 291 (371)
T ss_dssp EECSC-----CH---HHHHHHHHTEEEEEEEEECCCC
T ss_pred EECCC-----CH---HHHHHHHHHHhcCCEEEEeCCC
Confidence 65322 22 4588899999999999986543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.15 Score=38.59 Aligned_cols=96 Identities=9% Similarity=0.070 Sum_probs=61.9
Q ss_pred HHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc---c----CCCCCEEE
Q 030025 14 EAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ---S----VPNGDAIL 84 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~----~~~~D~i~ 84 (184)
.... ..+..+||-.|+|. |..+..+++.. +.+++++|. +.-++.+++..--..+..+-.+ . .+..|+++
T Consensus 160 ~~~~-~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vi 237 (340)
T 3s2e_A 160 KVTD-TRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVL 237 (340)
T ss_dssp HTTT-CCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred HHcC-CCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEE
Confidence 4444 77889999999874 88888888876 569999987 6666666654221222111111 0 11126665
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
-... .. ..++.+.+.|+|+|++++...
T Consensus 238 d~~g-----~~---~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 238 VTAV-----SP---KAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp ESSC-----CH---HHHHHHHHHEEEEEEEEECSC
T ss_pred EeCC-----CH---HHHHHHHHHhccCCEEEEeCC
Confidence 4321 12 468889999999999998643
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.82 Score=30.16 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=52.8
Q ss_pred HhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-c------CCCCCEEEe
Q 030025 15 AYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-S------VPNGDAILI 85 (184)
Q Consensus 15 ~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~------~~~~D~i~~ 85 (184)
+++...+..+|+=+|+|. |......+... +.+++++|. +..++.+++..++.++.+|..+ . ....|+|+.
T Consensus 12 ~~~~~~~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~ 90 (155)
T 2g1u_A 12 HMSKKQKSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFA 90 (155)
T ss_dssp -----CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEE
T ss_pred hhhcccCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEE
Confidence 344345678999998752 33333333333 468999998 6666666533456667677643 1 222388877
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
... +++....+..+.+.+.|...++.
T Consensus 91 ~~~-----~~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 91 FTN-----DDSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp CSS-----CHHHHHHHHHHHHHTSCCSEEEE
T ss_pred EeC-----CcHHHHHHHHHHHHHCCCCeEEE
Confidence 432 23333455556666666666555
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.24 Score=32.28 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=52.1
Q ss_pred CCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc--C-----CCCCEEEechhhhcC
Q 030025 22 IKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS--V-----PNGDAILIKWILHDW 92 (184)
Q Consensus 22 ~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~--~-----~~~D~i~~~~~l~~~ 92 (184)
..+|+=+|||. |......+.. .+..++++|. ++.++.+++ .++.++.+|..++ + ..+|++++...
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~---- 80 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIP---- 80 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS----
T ss_pred CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECC----
Confidence 46888898863 4333333333 3568999998 766665544 5788899998762 1 23388776322
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.+.+. ..+-...+.+.|+.+++.
T Consensus 81 ~~~~n-~~~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 81 NGYEA-GEIVASARAKNPDIEIIA 103 (140)
T ss_dssp CHHHH-HHHHHHHHHHCSSSEEEE
T ss_pred ChHHH-HHHHHHHHHHCCCCeEEE
Confidence 12222 223345566678877655
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.73 E-value=1.1 Score=33.94 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=60.3
Q ss_pred HHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc----ccCcc----C----CC
Q 030025 14 EAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG----DMFQS----V----PN 79 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~----d~~~~----~----~~ 79 (184)
+... +.+..+||-+|+|. |..+..+++.. ..+++++|. +.-++.+++..--..+.. |..+. . +.
T Consensus 162 ~~~~-~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~ 239 (352)
T 1e3j_A 162 RRAG-VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD 239 (352)
T ss_dssp HHHT-CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred HhcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCC
Confidence 4445 78889999999874 77777777765 567888886 666666654421122211 11111 1 12
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. |+|+-... .+ ..++.+.+.|+|+|++++...
T Consensus 240 g~D~vid~~g-----~~---~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 240 LPNVTIDCSG-----NE---KCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp CCSEEEECSC-----CH---HHHHHHHHHSCTTCEEEECSC
T ss_pred CCCEEEECCC-----CH---HHHHHHHHHHhcCCEEEEEec
Confidence 3 88865332 22 357888999999999998654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.12 Score=39.08 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=42.9
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY 63 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~ 63 (184)
..+...+++... .+...|||.=||+|.++.+..+. +-+++++|+ +...+.++++
T Consensus 239 ~~l~~~~i~~~~--~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r 293 (323)
T 1boo_A 239 AKLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFR 293 (323)
T ss_dssp THHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGG
T ss_pred HHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHH
Confidence 356677776654 67789999999999999887776 579999999 8887777654
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=93.31 E-value=0.21 Score=38.79 Aligned_cols=37 Identities=8% Similarity=0.139 Sum_probs=28.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC-------CCCeEEEeechh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY-------PHIKGINFDLPH 55 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~-------~~~~~~~~D~~~ 55 (184)
.+..-+|+|+|+|.|.++..+++.. ...++..++.+.
T Consensus 78 ~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp 121 (387)
T 1zkd_A 78 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP 121 (387)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCH
Confidence 4445579999999999998887642 345899999843
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.16 E-value=0.26 Score=33.96 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=56.1
Q ss_pred CCCCCeEEEecC--CcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-c--------C-CCC-CEEE
Q 030025 19 FEHIKQLVDVGG--SLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-S--------V-PNG-DAIL 84 (184)
Q Consensus 19 ~~~~~~ilDiG~--G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~--------~-~~~-D~i~ 84 (184)
+++..+||..|+ |.|..+..+++.. +.+++++|. ++..+.+++.. .... .|..+ . . +.. |+++
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g-~~~~-~d~~~~~~~~~~~~~~~~~~~D~vi 112 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLG-VEYV-GDSRSVDFADEILELTDGYGVDVVL 112 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTC-CSEE-EETTCSTHHHHHHHHTTTCCEEEEE
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcC-CCEE-eeCCcHHHHHHHHHHhCCCCCeEEE
Confidence 778899999994 5676666666654 468888887 66555554432 2221 12221 1 1 123 8777
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.+. .. ..++.+.+.|+|||+++....
T Consensus 113 ~~~-----g~----~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 113 NSL-----AG----EAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp ECC-----CT----HHHHHHHHTEEEEEEEEECSC
T ss_pred ECC-----ch----HHHHHHHHHhccCCEEEEEcC
Confidence 532 11 357888999999999998654
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.82 E-value=0.17 Score=38.80 Aligned_cols=96 Identities=14% Similarity=0.079 Sum_probs=59.2
Q ss_pred HHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc---ccCccCCCC-CEEEech
Q 030025 14 EAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG---DMFQSVPNG-DAILIKW 87 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~---d~~~~~~~~-D~i~~~~ 87 (184)
.... +++..+||-+|+|. |..+..+++.. +.++++++. +.-++.+++..--.++.. |..+..... |+|+-..
T Consensus 188 ~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~ 265 (369)
T 1uuf_A 188 RHWQ-AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTV 265 (369)
T ss_dssp HHTT-CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECC
T ss_pred HhcC-CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECC
Confidence 3345 78889999999874 77777788765 568888886 655555554321112211 111112223 8876533
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.- + ..++.+.+.|+|+|+++....
T Consensus 266 g~-----~---~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 266 AA-----P---HNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp SS-----C---CCHHHHHTTEEEEEEEEECCC
T ss_pred CC-----H---HHHHHHHHHhccCCEEEEecc
Confidence 21 1 236778899999999988653
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.45 Score=36.47 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=61.6
Q ss_pred HHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEE---cccCc---c---C-CCC-
Q 030025 14 EAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVG---GDMFQ---S---V-PNG- 80 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~---~d~~~---~---~-~~~- 80 (184)
.... +++..+||-+|+|. |..+..+++.....+++++|. +.-.+.+++..--..+. .|..+ . . +..
T Consensus 176 ~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~ 254 (370)
T 4ej6_A 176 DLSG-IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGV 254 (370)
T ss_dssp HHHT-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCE
T ss_pred HhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCC
Confidence 4455 78889999999874 777888888764338899987 66666655432111111 11111 1 1 113
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
|+|+-.. ... ..++.+.+.|+|||++++....
T Consensus 255 Dvvid~~-----G~~---~~~~~~~~~l~~~G~vv~~G~~ 286 (370)
T 4ej6_A 255 DVVIECA-----GVA---ETVKQSTRLAKAGGTVVILGVL 286 (370)
T ss_dssp EEEEECS-----CCH---HHHHHHHHHEEEEEEEEECSCC
T ss_pred CEEEECC-----CCH---HHHHHHHHHhccCCEEEEEecc
Confidence 7776532 222 4588899999999999986543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.47 Score=36.38 Aligned_cols=98 Identities=12% Similarity=0.161 Sum_probs=62.7
Q ss_pred HHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc-----cCc---cC-CCC-C
Q 030025 14 EAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD-----MFQ---SV-PNG-D 81 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d-----~~~---~~-~~~-D 81 (184)
+... +++..+||-+|+| .|..+..+++.....+++++|. +.-++.+++..--..+... ..+ .. +.. |
T Consensus 187 ~~~~-~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D 265 (378)
T 3uko_A 187 NTAK-VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVD 265 (378)
T ss_dssp TTTC-CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred hhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCC
Confidence 4444 7788999999987 4777888887753338999996 7777777665222222211 111 01 113 8
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCC-cEEEEEeee
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEG-GKVIVVESV 120 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~i~~~~ 120 (184)
+|+-.. ..+ ..++.+.+.|+|| |++++....
T Consensus 266 ~vid~~-----g~~---~~~~~~~~~l~~g~G~iv~~G~~ 297 (378)
T 3uko_A 266 YSFECI-----GNV---SVMRAALECCHKGWGTSVIVGVA 297 (378)
T ss_dssp EEEECS-----CCH---HHHHHHHHTBCTTTCEEEECSCC
T ss_pred EEEECC-----CCH---HHHHHHHHHhhccCCEEEEEccc
Confidence 876532 222 4588899999997 999986643
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.45 Score=36.23 Aligned_cols=97 Identities=14% Similarity=0.055 Sum_probs=61.0
Q ss_pred HHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCc-eEEE-----cccCcc----C-CC
Q 030025 14 EAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGV-KHVG-----GDMFQS----V-PN 79 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i-~~~~-----~d~~~~----~-~~ 79 (184)
+... +++..+||-+|+|. |..+..+++...-.+++++|. +.-++.+++. +.+ .+.. .|+.+. . +.
T Consensus 173 ~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~ 251 (363)
T 3m6i_A 173 QRAG-VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGI 251 (363)
T ss_dssp HHHT-CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSC
T ss_pred HHcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCC
Confidence 4555 78889999999874 788888888763334888886 6555555543 122 2221 111111 1 22
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. |+|+-.. ..+ ..++.+.+.|+|||++++...
T Consensus 252 g~Dvvid~~-----g~~---~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 252 EPAVALECT-----GVE---SSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp CCSEEEECS-----CCH---HHHHHHHHHSCTTCEEEECCC
T ss_pred CCCEEEECC-----CCh---HHHHHHHHHhcCCCEEEEEcc
Confidence 3 8887632 222 358889999999999998654
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.47 E-value=0.92 Score=34.99 Aligned_cols=100 Identities=13% Similarity=0.023 Sum_probs=62.9
Q ss_pred HhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEccc----Ccc-----CCCC-CE
Q 030025 15 AYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDM----FQS-----VPNG-DA 82 (184)
Q Consensus 15 ~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~----~~~-----~~~~-D~ 82 (184)
... +++..+||-+|+|. |..+..+++.....+++++|. +.-++.+++. +++.+...- .+. -+.. |+
T Consensus 180 ~~~-~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~~i~~~~~~~~~~~v~~~t~g~g~Dv 257 (398)
T 1kol_A 180 TAG-VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-GFEIADLSLDTPLHEQIAALLGEPEVDC 257 (398)
T ss_dssp HTT-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred HcC-CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc-CCcEEccCCcchHHHHHHHHhCCCCCCE
Confidence 344 77889999999874 788888888764337899987 6666666554 233332111 110 1123 88
Q ss_pred EEechh----------hhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 83 ILIKWI----------LHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 83 i~~~~~----------l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
|+-... .|+...+ ..++.+.+.|+|||++++...
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 258 AVDAVGFEARGHGHEGAKHEAPA---TVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp EEECCCTTCBCSSTTGGGSBCTT---HHHHHHHHHEEEEEEEEECSC
T ss_pred EEECCCCcccccccccccccchH---HHHHHHHHHHhcCCEEEEecc
Confidence 865432 1221111 368899999999999988654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=92.07 E-value=1.5 Score=27.89 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=48.8
Q ss_pred CCeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc-------CCCCCEEEechhhhc
Q 030025 22 IKQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS-------VPNGDAILIKWILHD 91 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~~l~~ 91 (184)
.++|+=+|+ |..+..+++.. .+.+++.+|. +...+..++..++.++.+|..++ ....|+|+...
T Consensus 4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~---- 77 (140)
T 1lss_A 4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT---- 77 (140)
T ss_dssp -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC----
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee----
Confidence 467888877 55555444432 2468888887 55554433223566777776541 22348887753
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
++++....+..+.+.++++ .++.
T Consensus 78 -~~~~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 78 -GKEEVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp -SCHHHHHHHHHHHHHTTCC-CEEE
T ss_pred -CCchHHHHHHHHHHHcCCC-EEEE
Confidence 2223234455566668775 4443
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=91.96 E-value=1.4 Score=32.09 Aligned_cols=89 Identities=13% Similarity=0.139 Sum_probs=49.3
Q ss_pred CeEEEecCCc-C-hHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCC-CCCEEEechhhhcCChHHHH
Q 030025 23 KQLVDVGGSL-G-NTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVP-NGDAILIKWILHDWSDEHCL 98 (184)
Q Consensus 23 ~~ilDiG~G~-G-~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~-~~D~i~~~~~l~~~~~~~~~ 98 (184)
++|.=||+|. | .++..+.+.....++++.|. +...+.+++..-......|..+... ..|+|+..- ++....
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilav-----p~~~~~ 76 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFR 76 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-----CHHHHH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcC-----CHHHHH
Confidence 3677788763 3 33333333321237888987 5555544332211111223333344 559988743 434445
Q ss_pred HHHHHHHhhCCCCcEEEE
Q 030025 99 KLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 99 ~~l~~~~~~L~pgG~l~i 116 (184)
.+++++...++|+..++.
T Consensus 77 ~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 77 EIAKKLSYILSEDATVTD 94 (281)
T ss_dssp HHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHhhCCCCcEEEE
Confidence 788889889999876554
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=91.96 E-value=0.39 Score=36.46 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=61.7
Q ss_pred HHHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc---ccCcc---C--CCC-C
Q 030025 13 LEAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG---DMFQS---V--PNG-D 81 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~---d~~~~---~--~~~-D 81 (184)
++... +++..+||-+|+|. |..+..+++.....+++++|. +.-++.+++..--..+.. |..+. . +.. |
T Consensus 159 l~~~~-~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D 237 (352)
T 3fpc_A 159 AELAN-IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVD 237 (352)
T ss_dssp HHHTT-CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEE
T ss_pred HHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCC
Confidence 35555 78889999999874 777777777653337999997 665666655421122211 11110 1 123 8
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+|+-.. ..+ ..++.+.+.|+|||+++.....
T Consensus 238 ~v~d~~-----g~~---~~~~~~~~~l~~~G~~v~~G~~ 268 (352)
T 3fpc_A 238 KVVIAG-----GDV---HTFAQAVKMIKPGSDIGNVNYL 268 (352)
T ss_dssp EEEECS-----SCT---THHHHHHHHEEEEEEEEECCCC
T ss_pred EEEECC-----CCh---HHHHHHHHHHhcCCEEEEeccc
Confidence 776522 221 3588899999999999986543
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=91.90 E-value=1.3 Score=32.43 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=49.9
Q ss_pred CeEEEecCCc--ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHH
Q 030025 23 KQLVDVGGSL--GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 23 ~~ilDiG~G~--G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
.+|.=||+|. +.++..+.+..+..++++.|. +...+.+.+.........|..+.....|+|++.-. +.....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp-----~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVP-----IKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSC-----HHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCC-----HHHHHH
Confidence 5788898774 244444555433568889987 55554433221111122333322334498887443 333357
Q ss_pred HHHHHHhh-CCCCcEEE
Q 030025 100 LLKNCHKS-IPEGGKVI 115 (184)
Q Consensus 100 ~l~~~~~~-L~pgG~l~ 115 (184)
+++++... ++|+..++
T Consensus 82 v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 82 FIKILADLDLKEDVIIT 98 (290)
T ss_dssp HHHHHHTSCCCTTCEEE
T ss_pred HHHHHHhcCCCCCCEEE
Confidence 78888888 88876555
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=91.87 E-value=0.24 Score=37.42 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=44.0
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-h---hHhhhCCCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-P---HVIQHSPEY 63 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~---~~~~~a~~~ 63 (184)
...+++.++.... .+...|||.=||+|.++.+..+. +-+++++|+ + ...+.++++
T Consensus 228 p~~l~~~~i~~~~--~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~R 286 (319)
T 1eg2_A 228 PAAVIERLVRALS--HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTF 286 (319)
T ss_dssp CHHHHHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC--CCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHH
Confidence 3567777887765 67789999999999999988887 568999999 7 777766543
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.77 E-value=0.88 Score=34.79 Aligned_cols=93 Identities=18% Similarity=0.155 Sum_probs=57.9
Q ss_pred CCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc-----cCcc---C-CCC-CEEEec
Q 030025 19 FEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD-----MFQS---V-PNG-DAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d-----~~~~---~-~~~-D~i~~~ 86 (184)
+.+..+||-+|+|. |..+..+++.....+++++|. +.-++.+++..--..+... +.+. . ... |+|+-.
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~ 269 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC 269 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEEC
Confidence 77889999999863 777777887763237899986 6666666544211122111 1110 0 113 887653
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCC-cEEEEEee
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEG-GKVIVVES 119 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 119 (184)
. ..+ ..++.+.+.|+|+ |++++...
T Consensus 270 ~-----g~~---~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 270 V-----GNV---GVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp S-----CCH---HHHHHHHHTBCTTTCEEEECSC
T ss_pred C-----CCH---HHHHHHHHHhhcCCcEEEEEcC
Confidence 2 222 3588899999999 99988653
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=91.72 E-value=0.94 Score=34.63 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=57.6
Q ss_pred CCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc-----cCc---cC-CCC-CEEEec
Q 030025 19 FEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD-----MFQ---SV-PNG-DAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d-----~~~---~~-~~~-D~i~~~ 86 (184)
+.+..+||-+|+|. |..+..+++.....+++++|. +.-++.+++..--..+..+ +.+ .. ... |+|+-.
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~ 268 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 268 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEEC
Confidence 77889999999874 777777777763237899986 6656665543211222111 111 01 113 877653
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCC-cEEEEEee
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEG-GKVIVVES 119 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 119 (184)
. ..+ ..++.+.+.|+|+ |++++...
T Consensus 269 ~-----g~~---~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 269 I-----GRL---DTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp S-----CCH---HHHHHHHHHBCTTTCEEEECSC
T ss_pred C-----CCH---HHHHHHHHHhhcCCcEEEEecc
Confidence 2 222 3588899999999 99988653
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.64 E-value=1.8 Score=32.51 Aligned_cols=99 Identities=7% Similarity=0.037 Sum_probs=61.3
Q ss_pred HHHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc------cC--CCC-C
Q 030025 13 LEAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ------SV--PNG-D 81 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~------~~--~~~-D 81 (184)
..... ..+..+||=.|+| .|..+..+++......++.+|. +.-++.+++..-...+...-.+ .. ... |
T Consensus 153 ~~~~~-~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d 231 (346)
T 4a2c_A 153 FHLAQ-GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQ 231 (346)
T ss_dssp HHHTT-CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSE
T ss_pred HHHhc-cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcc
Confidence 34444 7788999999987 4566677777765556788887 6666777665322322221111 01 122 6
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+|+-.. ..+ ..++...++++|||++++....
T Consensus 232 ~v~d~~-----G~~---~~~~~~~~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 232 LILETA-----GVP---QTVELAVEIAGPHAQLALVGTL 262 (346)
T ss_dssp EEEECS-----CSH---HHHHHHHHHCCTTCEEEECCCC
T ss_pred cccccc-----ccc---chhhhhhheecCCeEEEEEecc
Confidence 654422 222 4588889999999999986543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.77 Score=35.08 Aligned_cols=97 Identities=12% Similarity=0.049 Sum_probs=59.5
Q ss_pred HHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc-----cCc---cC-CCC-C
Q 030025 14 EAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD-----MFQ---SV-PNG-D 81 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d-----~~~---~~-~~~-D 81 (184)
+... +.+..+||-+|+| .|..+..+++.....+++++|. +.-++.+++..--..+..+ +.+ .. +.. |
T Consensus 185 ~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~D 263 (373)
T 1p0f_A 185 NTAK-VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVD 263 (373)
T ss_dssp TTTC-CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred hccC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCC
Confidence 3344 7788999999987 3777777777653237889986 6666666544211222111 111 01 113 8
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCC-cEEEEEee
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEG-GKVIVVES 119 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 119 (184)
+|+-.. ..+ ..++.+.+.|+|+ |++++...
T Consensus 264 vvid~~-----g~~---~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 264 YAVECA-----GRI---ETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp EEEECS-----CCH---HHHHHHHHTBCTTTCEEEECCC
T ss_pred EEEECC-----CCH---HHHHHHHHHHhcCCCEEEEEcc
Confidence 886532 222 3588899999999 99988653
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.37 Score=36.43 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=61.5
Q ss_pred CCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc--cCcc---C--CCC-CEEEechh
Q 030025 19 FEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD--MFQS---V--PNG-DAILIKWI 88 (184)
Q Consensus 19 ~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d--~~~~---~--~~~-D~i~~~~~ 88 (184)
..+..+||-+|+|. |..+..+++.....+++++|. +.-++.+++..--..+..+ ..+. . +.. |+|+-..
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~- 247 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFV- 247 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESS-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECC-
Confidence 67889999999874 788888888765679999987 6666666655221222111 1111 1 113 7766522
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
..+ ..++.+.+.|+|+|++++....
T Consensus 248 ----G~~---~~~~~~~~~l~~~G~iv~~G~~ 272 (345)
T 3jv7_A 248 ----GAQ---STIDTAQQVVAVDGHISVVGIH 272 (345)
T ss_dssp ----CCH---HHHHHHHHHEEEEEEEEECSCC
T ss_pred ----CCH---HHHHHHHHHHhcCCEEEEECCC
Confidence 222 3688999999999999986543
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=91.43 E-value=0.33 Score=36.74 Aligned_cols=123 Identities=9% Similarity=0.024 Sum_probs=75.2
Q ss_pred CCCeEEEecCCcChHHHHHHhhCC-CCeE-EEeec-hhHhhhCCCC-CCceEEEcccCc-c---CC--CCCEEEechhhh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYP-HIKG-INFDL-PHVIQHSPEY-PGVKHVGGDMFQ-S---VP--NGDAILIKWILH 90 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~-~~~~-~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~---~~--~~D~i~~~~~l~ 90 (184)
+..+++|+-||.|.++..+.+..- .-.+ .++|+ +.+.+..+.+ +.. +..+|+.+ . ++ ..|+++......
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ 87 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPCQ 87 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCCT
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCcc
Confidence 456899999999999998887632 2244 68998 6666544433 333 56677775 2 23 239998765544
Q ss_pred cC---------C-hHHHHHHHHHHHh-h---C--CCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHH
Q 030025 91 DW---------S-DEHCLKLLKNCHK-S---I--PEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKH 154 (184)
Q Consensus 91 ~~---------~-~~~~~~~l~~~~~-~---L--~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
.+ . +++...++.++.+ + + +|. +++.|....- .. + .+.+
T Consensus 88 ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~--~~~lENV~gl-------------~~---------~--~~~~ 141 (327)
T 3qv2_A 88 PYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPK--HIFIENVPLF-------------KE---------S--LVFK 141 (327)
T ss_dssp TCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCS--EEEEEECGGG-------------GG---------S--HHHH
T ss_pred CcccccCCCCCCCccccchhHHHHHHHHHHHhccCCC--EEEEEchhhh-------------cC---------h--HHHH
Confidence 44 1 1222345666666 4 4 454 6666644311 00 0 1357
Q ss_pred HHHHHHHHcCCceeEE
Q 030025 155 EFTTLATEAGFSGIRF 170 (184)
Q Consensus 155 ~~~~~l~~aGf~~i~~ 170 (184)
.+.+.|++.||.....
T Consensus 142 ~i~~~l~~~GY~v~~~ 157 (327)
T 3qv2_A 142 EIYNILIKNQYYIKDI 157 (327)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhCCCEEEEE
Confidence 7888899999986543
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.42 E-value=0.47 Score=36.26 Aligned_cols=89 Identities=12% Similarity=0.166 Sum_probs=57.1
Q ss_pred CCCeEEEec-CC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEE-c--ccCc---cCC-CC-CEEEechhh
Q 030025 21 HIKQLVDVG-GS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVG-G--DMFQ---SVP-NG-DAILIKWIL 89 (184)
Q Consensus 21 ~~~~ilDiG-~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~-~--d~~~---~~~-~~-D~i~~~~~l 89 (184)
+..+||=+| +| .|..+..+++.....++++++. +.-++.+++.. ...+. . |..+ ... .. |+|+-..
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lG-ad~vi~~~~~~~~~v~~~~~~g~Dvvid~~-- 247 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLG-AHHVIDHSKPLAAEVAALGLGAPAFVFSTT-- 247 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTT-CSEEECTTSCHHHHHHTTCSCCEEEEEECS--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHhcCCCceEEEECC--
Confidence 667899998 44 6888888888745679999998 66666665542 22111 1 1111 111 23 7776522
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
..+ ..++.+.+.|+|+|++++..
T Consensus 248 ---g~~---~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 248 ---HTD---KHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp ---CHH---HHHHHHHHHSCTTCEEEECS
T ss_pred ---Cch---hhHHHHHHHhcCCCEEEEEC
Confidence 222 46888999999999999863
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=1 Score=34.44 Aligned_cols=93 Identities=14% Similarity=0.057 Sum_probs=58.0
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc-----cCccC----CCC-CEEEec
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD-----MFQSV----PNG-DAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d-----~~~~~----~~~-D~i~~~ 86 (184)
+.+..+||-+|+| .|..+..+++.....+++++|. +.-++.+++..--..+..+ +.+.. +.. |+|+-.
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~ 272 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 272 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEEC
Confidence 7788999999987 4777778887763337899986 6656665544211122111 11100 113 887653
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCC-cEEEEEee
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEG-GKVIVVES 119 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 119 (184)
. ..+ ..++.+.+.|+|+ |++++...
T Consensus 273 ~-----G~~---~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 273 A-----GTA---QTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp S-----CCH---HHHHHHHHTBCTTTCEEEECCC
T ss_pred C-----CCH---HHHHHHHHHhhcCCCEEEEECC
Confidence 2 222 3588899999999 99988654
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.91 Score=34.08 Aligned_cols=96 Identities=10% Similarity=0.107 Sum_probs=60.9
Q ss_pred HHhcCCCCCCeEEEecC--CcChHHHHHHhhCCCCeEEEeec-hhHhhhC-CCCCCceEEEcccCc---c----CCCC-C
Q 030025 14 EAYKGFEHIKQLVDVGG--SLGNTLKAITSKYPHIKGINFDL-PHVIQHS-PEYPGVKHVGGDMFQ---S----VPNG-D 81 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~--G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a-~~~~~i~~~~~d~~~---~----~~~~-D 81 (184)
+... +++..+||-.|+ |.|..+..+++.. ++++++++. +.-++.+ ++..--..+...-.+ . .+.. |
T Consensus 143 ~~~~-~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d 220 (336)
T 4b7c_A 143 DVGQ-PKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGID 220 (336)
T ss_dssp HTTC-CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred HhcC-CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCce
Confidence 4445 888999999998 5778888888775 569999986 6666655 444221112111111 0 1223 7
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+++-+. .. ..++.+.+.|+|+|++++....
T Consensus 221 ~vi~~~-----g~----~~~~~~~~~l~~~G~iv~~G~~ 250 (336)
T 4b7c_A 221 VFFDNV-----GG----EILDTVLTRIAFKARIVLCGAI 250 (336)
T ss_dssp EEEESS-----CH----HHHHHHHTTEEEEEEEEECCCG
T ss_pred EEEECC-----Cc----chHHHHHHHHhhCCEEEEEeec
Confidence 776532 21 2588899999999999986543
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=1.2 Score=33.51 Aligned_cols=97 Identities=11% Similarity=0.079 Sum_probs=59.7
Q ss_pred HHHhcCCCCCCeEEEecCCcC-hHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEE---EcccCc---cCCC--C-C
Q 030025 13 LEAYKGFEHIKQLVDVGGSLG-NTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHV---GGDMFQ---SVPN--G-D 81 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G~G-~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~---~~d~~~---~~~~--~-D 81 (184)
++... ..+..+||=+|+|.+ ..+..+++.....+++++|. ++-++.+++..--..+ ..|..+ .... . |
T Consensus 156 l~~~~-~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d 234 (348)
T 4eez_A 156 IKVSG-VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQ 234 (348)
T ss_dssp HHHHT-CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEE
T ss_pred ecccC-CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCce
Confidence 34445 778899999999854 55666666666789999997 6656666554222222 222221 1111 2 4
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.++.... .. ..+....+.|+|+|++++..
T Consensus 235 ~~~~~~~-----~~---~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 235 SAIVCAV-----AR---IAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp EEEECCS-----CH---HHHHHHHHTEEEEEEEEECC
T ss_pred EEEEecc-----Cc---chhheeheeecCCceEEEEe
Confidence 4443222 12 45888899999999998864
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=1.3 Score=34.67 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=56.0
Q ss_pred CCCeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc-------CCCCCEEEechhhh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS-------VPNGDAILIKWILH 90 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~~l~ 90 (184)
...+|+=+|+| .++..+++.. .+..++++|. ++.++.+++ .++.++.+|..++ ...+|+|++..
T Consensus 3 ~~~~viIiG~G--r~G~~va~~L~~~g~~vvvId~d~~~v~~~~~-~g~~vi~GDat~~~~L~~agi~~A~~viv~~--- 76 (413)
T 3l9w_A 3 HGMRVIIAGFG--RFGQITGRLLLSSGVKMVVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAI--- 76 (413)
T ss_dssp -CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH-TTCCCEESCTTCHHHHHHTTTTTCSEEEECC---
T ss_pred CCCeEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh-CCCeEEEcCCCCHHHHHhcCCCccCEEEECC---
Confidence 34678888875 3444444332 3578999998 777776653 4677888999872 22348776633
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
++++....+-...+.+.|+..++.-
T Consensus 77 --~~~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 77 --DDPQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp --SSHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred --CChHHHHHHHHHHHHhCCCCeEEEE
Confidence 3334345556667777888777763
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=90.50 E-value=1.3 Score=33.22 Aligned_cols=91 Identities=10% Similarity=0.062 Sum_probs=58.6
Q ss_pred CCCCCeEEEecC--CcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc---c---C--CCC-CEEEec
Q 030025 19 FEHIKQLVDVGG--SLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ---S---V--PNG-DAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG~--G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~---~--~~~-D~i~~~ 86 (184)
+++..+||-+|+ |.|..+..+++.. ++++++++. +.-++.+++...-..+..+-.+ . . +.. |+++-+
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~ 224 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDS 224 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEEC
Confidence 778899999993 5677888788775 569999997 6666666554322222211111 0 1 223 877653
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..- ..++.+.+.|+|||++++...
T Consensus 225 ~g~---------~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 225 VGK---------DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp CGG---------GGHHHHHHHEEEEEEEEECCC
T ss_pred CCh---------HHHHHHHHHhccCCEEEEEcC
Confidence 321 247788899999999998654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.39 E-value=1.1 Score=31.33 Aligned_cols=86 Identities=10% Similarity=0.092 Sum_probs=53.2
Q ss_pred eEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc-------CCCCCEEEechhhhcCC
Q 030025 24 QLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS-------VPNGDAILIKWILHDWS 93 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~~l~~~~ 93 (184)
+|+=+|+ |.++..+++.. .+..++.+|. ++.++...+..++.++.+|..++ ...+|++++.. +
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~-----~ 74 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILT-----P 74 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECC-----S
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEec-----C
Confidence 4666665 66666666542 3568899997 66555433334688899998862 23348887632 3
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEE
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
+++...++....+.+.|..+++.
T Consensus 75 ~d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 75 RDEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp CHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CcHHHHHHHHHHHHHcCCCeEEE
Confidence 33334556666666667777665
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.31 E-value=2.1 Score=32.92 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=59.3
Q ss_pred HHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCC-C------CC--CceEEEcccCccCCCC-C
Q 030025 12 ILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSP-E------YP--GVKHVGGDMFQSVPNG-D 81 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~-~------~~--~i~~~~~d~~~~~~~~-D 81 (184)
+++++.+....++||.++.+.|.++..++...+ ..+ -|. -+-+++- . .+ ++.+. +..+..+.. |
T Consensus 29 ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~~~--~~~-~ds-~~~~~~~~~n~~~~~~~~~~~~~~--~~~~~~~~~~~ 102 (375)
T 4dcm_A 29 LLQQLDDTEIRGPVLILNDAFGALSCALAEHKP--YSI-GDS-YISELATRENLRLNGIDESSVKFL--DSTADYPQQPG 102 (375)
T ss_dssp HHHTTTTCCCCSCEEEECCSSSHHHHHTGGGCC--EEE-ESC-HHHHHHHHHHHHHTTCCGGGSEEE--ETTSCCCSSCS
T ss_pred HHHhhhhccCCCCEEEECCCCCHHHHhhccCCc--eEE-EhH-HHHHHHHHHHHHHcCCCccceEec--ccccccccCCC
Confidence 455554344557899999999999998876522 222 342 2111111 1 11 24443 333333333 8
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+++....= ...+....|..+...|+||+.+++...
T Consensus 103 ~v~~~lpk---~~~~l~~~L~~l~~~l~~~~~i~~~g~ 137 (375)
T 4dcm_A 103 VVLIKVPK---TLALLEQQLRALRKVVTSDTRIIAGAK 137 (375)
T ss_dssp EEEEECCS---CHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred EEEEEcCC---CHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence 88774431 234556789999999999999987654
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.22 E-value=0.5 Score=35.75 Aligned_cols=94 Identities=11% Similarity=0.093 Sum_probs=59.3
Q ss_pred HHhcCCCCCCeEEEecC--CcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc--c----C----CCC
Q 030025 14 EAYKGFEHIKQLVDVGG--SLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ--S----V----PNG 80 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~--G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~--~----~----~~~ 80 (184)
.... +.+..+||-+|+ |.|..+..+++.. +.++++++. +...+.+++.. .... .|..+ . + ...
T Consensus 163 ~~~~-~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~g-~~~~-~d~~~~~~~~~~~~~~~~~~ 238 (347)
T 2hcy_A 163 KSAN-LMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSIG-GEVF-IDFTKEKDIVGAVLKATDGG 238 (347)
T ss_dssp HTTT-CCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHTT-CCEE-EETTTCSCHHHHHHHHHTSC
T ss_pred HhcC-CCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHcC-CceE-EecCccHhHHHHHHHHhCCC
Confidence 3444 778899999998 4777777777765 468888886 55555554432 2222 13321 1 1 113
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
|+++.... .. ..++.+.+.|+|+|++++...
T Consensus 239 ~D~vi~~~g-----~~---~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 239 AHGVINVSV-----SE---AAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp EEEEEECSS-----CH---HHHHHHTTSEEEEEEEEECCC
T ss_pred CCEEEECCC-----cH---HHHHHHHHHHhcCCEEEEEeC
Confidence 77765432 11 468889999999999988653
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=90.21 E-value=0.89 Score=34.71 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=57.0
Q ss_pred CCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc-----cCc---cC-CCC-CEEEec
Q 030025 19 FEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD-----MFQ---SV-PNG-DAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d-----~~~---~~-~~~-D~i~~~ 86 (184)
+++..+||-+|+|. |..+..+++.....+++++|. +.-++.+++..--..+... ..+ .. +.. |+|+-.
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~ 267 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC 267 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEEC
Confidence 77889999999763 677777777653237889986 5555555543211122111 111 01 113 887653
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCC-cEEEEEee
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEG-GKVIVVES 119 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 119 (184)
.. .+ ..++.+.+.|+|+ |++++...
T Consensus 268 ~g-----~~---~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 268 IG-----NV---KVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp SC-----CH---HHHHHHHHTBCTTTCEEEECSC
T ss_pred CC-----cH---HHHHHHHHhhccCCcEEEEEec
Confidence 22 22 3588899999999 99998653
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=90.18 E-value=1.2 Score=33.46 Aligned_cols=89 Identities=11% Similarity=0.128 Sum_probs=57.9
Q ss_pred CCCCCeEEEecC--CcChHHHHHHhhCCCCeEEEeec-hhHhhhCC-CCCCceEEEcccCc--cC--------CCC-CEE
Q 030025 19 FEHIKQLVDVGG--SLGNTLKAITSKYPHIKGINFDL-PHVIQHSP-EYPGVKHVGGDMFQ--SV--------PNG-DAI 83 (184)
Q Consensus 19 ~~~~~~ilDiG~--G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~-~~~~i~~~~~d~~~--~~--------~~~-D~i 83 (184)
+.+..+||-.|+ |.|..+..+++.. ++++++++. +.-++.++ +. +..... |..+ .+ +.. |++
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~-g~~~~~-d~~~~~~~~~~~~~~~~~~~d~v 229 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKF-GFDDAF-NYKEESDLTAALKRCFPNGIDIY 229 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTS-CCSEEE-ETTSCSCSHHHHHHHCTTCEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc-CCceEE-ecCCHHHHHHHHHHHhCCCCcEE
Confidence 778899999997 5778887777765 468999987 56666555 33 222211 2211 11 223 777
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+-+.. . ..++.+.+.|+|||++++...
T Consensus 230 i~~~g-----~----~~~~~~~~~l~~~G~~v~~G~ 256 (345)
T 2j3h_A 230 FENVG-----G----KMLDAVLVNMNMHGRIAVCGM 256 (345)
T ss_dssp EESSC-----H----HHHHHHHTTEEEEEEEEECCC
T ss_pred EECCC-----H----HHHHHHHHHHhcCCEEEEEcc
Confidence 65332 2 258888999999999998654
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=90.13 E-value=0.47 Score=35.64 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=56.6
Q ss_pred CCCCCeEEEecC--CcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc--c--------CCCC-CEEE
Q 030025 19 FEHIKQLVDVGG--SLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ--S--------VPNG-DAIL 84 (184)
Q Consensus 19 ~~~~~~ilDiG~--G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~--~--------~~~~-D~i~ 84 (184)
+.+..+||-.|+ |.|..+..+++.. +++++++|. +..++.+++. +.... .|..+ . .... |+++
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~-g~~~~-~d~~~~~~~~~~~~~~~~~~~d~vi 219 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI-GFDAA-FNYKTVNSLEEALKKASPDGYDCYF 219 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT-TCSEE-EETTSCSCHHHHHHHHCTTCEEEEE
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc-CCcEE-EecCCHHHHHHHHHHHhCCCCeEEE
Confidence 778899999997 5677777777765 568999987 5555555333 22211 12221 0 1123 7776
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.+.. . ..++.+.+.|+|||++++...
T Consensus 220 ~~~g-----~----~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 220 DNVG-----G----EFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp ESSC-----H----HHHHHHHTTEEEEEEEEECCC
T ss_pred ECCC-----h----HHHHHHHHHHhcCCEEEEEec
Confidence 5332 2 247888899999999988654
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=90.13 E-value=0.47 Score=35.89 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=57.7
Q ss_pred CCCCCeEEEecCCc-ChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCCCCceEEE----cccCccC--CCC-CEEEechh
Q 030025 19 FEHIKQLVDVGGSL-GNTLKAITSKY-PHIKGINFDL-PHVIQHSPEYPGVKHVG----GDMFQSV--PNG-DAILIKWI 88 (184)
Q Consensus 19 ~~~~~~ilDiG~G~-G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~i~~~~----~d~~~~~--~~~-D~i~~~~~ 88 (184)
+ +..+||-+|+|. |..+..+++.. |+.++++++. +.-++.+++..--.++. .|..... +.. |+|+-...
T Consensus 169 ~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g 247 (344)
T 2h6e_A 169 F-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVG 247 (344)
T ss_dssp C-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSC
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCC
Confidence 6 789999999863 67777777764 4678999986 55556555432111221 1111111 223 87765332
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.+ ..++.+.+.|+|+|++++...
T Consensus 248 -----~~---~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 248 -----TE---ETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp -----CH---HHHHHHHHHEEEEEEEEECCC
T ss_pred -----Ch---HHHHHHHHHhhcCCEEEEeCC
Confidence 22 358888999999999988654
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=89.59 E-value=0.6 Score=35.31 Aligned_cols=97 Identities=21% Similarity=0.243 Sum_probs=58.9
Q ss_pred HHhcCCCCCCeEEEecCC--cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc------c-CC-CC-C
Q 030025 14 EAYKGFEHIKQLVDVGGS--LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ------S-VP-NG-D 81 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G--~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~------~-~~-~~-D 81 (184)
.... +.+..+||-.|+| .|..+..+++.....+++++|. +..++.+++...-..+...-.+ . .. .. |
T Consensus 164 ~~~~-~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d 242 (347)
T 1jvb_A 164 RKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVD 242 (347)
T ss_dssp HHTT-CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred HhcC-CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCce
Confidence 3445 7788999999987 6666767776643568999986 6555555433211111111011 1 11 23 7
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+++-... .+ ..++.+.+.|+|+|++++...
T Consensus 243 ~vi~~~g-----~~---~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 243 AVIDLNN-----SE---KTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp EEEESCC-----CH---HHHTTGGGGEEEEEEEEECCS
T ss_pred EEEECCC-----CH---HHHHHHHHHHhcCCEEEEECC
Confidence 7765322 22 358888999999999988553
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=89.49 E-value=0.52 Score=35.65 Aligned_cols=122 Identities=15% Similarity=0.062 Sum_probs=71.2
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc----cCCCCCEEEechhhhcCC--
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ----SVPNGDAILIKWILHDWS-- 93 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~----~~~~~D~i~~~~~l~~~~-- 93 (184)
..+++|+-||.|.++..+.+.. --.+.++|. +.+++..+.+ +... .+|+.+ ..+..|+|+.......++
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG-~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~a 87 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSIS 87 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCTT
T ss_pred CCcEEEECCCcCHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcchh
Confidence 4689999999999999988873 224667887 6665544433 3332 577765 123349988865544442
Q ss_pred ------hHHHHHHHH---HHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcC
Q 030025 94 ------DEHCLKLLK---NCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAG 164 (184)
Q Consensus 94 ------~~~~~~~l~---~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 164 (184)
+++...++. ++.+.++|. +++.|....-. . .....+.+.+.+.|++.|
T Consensus 88 g~~~g~~d~r~~L~~~~~r~i~~~~P~--~~~~ENV~gl~-------------~--------~~~~~~~~~i~~~l~~~G 144 (327)
T 2c7p_A 88 GKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFA-------------S--------HDNGNTLEVVKNTMNELD 144 (327)
T ss_dssp SCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGG-------------T--------GGGGHHHHHHHHHHHHTT
T ss_pred cccCCCcchhhHHHHHHHHHHHhccCc--EEEEeCcHHHH-------------h--------ccccHHHHHHHHHHHhCC
Confidence 111112222 333446886 66666543110 0 001124577888899999
Q ss_pred CceeE
Q 030025 165 FSGIR 169 (184)
Q Consensus 165 f~~i~ 169 (184)
+....
T Consensus 145 Y~v~~ 149 (327)
T 2c7p_A 145 YSFHA 149 (327)
T ss_dssp BCCEE
T ss_pred CEEEE
Confidence 87543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=89.49 E-value=0.31 Score=37.23 Aligned_cols=95 Identities=13% Similarity=-0.010 Sum_probs=60.2
Q ss_pred HhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc---c----CCC-C-CEE
Q 030025 15 AYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ---S----VPN-G-DAI 83 (184)
Q Consensus 15 ~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~----~~~-~-D~i 83 (184)
... +++..+||-+|+|. |..+..+++.. ++++++++. +.-++.+++..--..+..+..+ . .+. . |+|
T Consensus 184 ~~~-~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~v 261 (363)
T 3uog_A 184 KGH-LRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHI 261 (363)
T ss_dssp TTC-CCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEE
T ss_pred hcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEE
Confidence 344 77889999999774 77777777765 569999997 6666666544222222211111 0 112 3 877
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+-... . ..++.+.+.|+|+|++++....
T Consensus 262 id~~g-~--------~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 262 LEIAG-G--------AGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp EEETT-S--------SCHHHHHHHEEEEEEEEEECCC
T ss_pred EECCC-h--------HHHHHHHHHhhcCCEEEEEecC
Confidence 65432 1 2377788899999999987643
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=89.44 E-value=3.8 Score=30.56 Aligned_cols=121 Identities=16% Similarity=0.107 Sum_probs=72.0
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc----cCCCCCEEEechhhhcC-----
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ----SVPNGDAILIKWILHDW----- 92 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~----~~~~~D~i~~~~~l~~~----- 92 (184)
.+|+|+=||.|.++.-+-+..- -.+.++|+ +.+.+.-+.+-.-.++.+|+.+ .++..|+++......-+
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~-~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~ 79 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGS 79 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC-EEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTE
T ss_pred CeEEEeCcCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCC
Confidence 4799999999999988877632 23457777 6555544333234677888876 23444998775544333
Q ss_pred ----ChHHHHHHHHH---HHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCC
Q 030025 93 ----SDEHCLKLLKN---CHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGF 165 (184)
Q Consensus 93 ----~~~~~~~~l~~---~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 165 (184)
.++ ...++.+ +.+.++|. +++.|....- .. .........+.+.|++.||
T Consensus 80 ~~g~~d~-R~~L~~~~~r~i~~~~Pk--~~~~ENV~gl-------------~~--------~~~~~~~~~i~~~l~~~GY 135 (331)
T 3ubt_Y 80 LRGIDDP-RGKLFYEYIRILKQKKPI--FFLAENVKGM-------------MA--------QRHNKAVQEFIQEFDNAGY 135 (331)
T ss_dssp ECCTTCG-GGHHHHHHHHHHHHHCCS--EEEEEECCGG-------------GG--------CTTSHHHHHHHHHHHHHTE
T ss_pred ccCCCCc-hhHHHHHHHHHHhccCCe--EEEeeeeccc-------------cc--------ccccchhhhhhhhhccCCc
Confidence 222 2234444 44446886 6666654211 00 0111245777888999998
Q ss_pred cee
Q 030025 166 SGI 168 (184)
Q Consensus 166 ~~i 168 (184)
.+.
T Consensus 136 ~v~ 138 (331)
T 3ubt_Y 136 DVH 138 (331)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=89.39 E-value=2.3 Score=31.95 Aligned_cols=91 Identities=13% Similarity=0.152 Sum_probs=59.0
Q ss_pred HhcCCCCCCeEEEecCC-cChHHHHHHhhCCCC-eEEEeec-hhHhhhCCCCCCceEEEcccCc-c----C----CCC-C
Q 030025 15 AYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHI-KGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-S----V----PNG-D 81 (184)
Q Consensus 15 ~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~----~----~~~-D 81 (184)
... + +..+||-+|+| .|..+..+++.. +. ++++++. +.-++.+++. ...+ .|..+ . . +.. |
T Consensus 160 ~~~-~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l--a~~v-~~~~~~~~~~~~~~~~~~g~D 233 (343)
T 2dq4_A 160 GSG-V-SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY--ADRL-VNPLEEDLLEVVRRVTGSGVE 233 (343)
T ss_dssp TTC-C-TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT--CSEE-ECTTTSCHHHHHHHHHSSCEE
T ss_pred hCC-C-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh--HHhc-cCcCccCHHHHHHHhcCCCCC
Confidence 444 6 78899999975 467777777765 45 8999987 6667777665 3222 12211 1 1 223 7
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+|+-... .+ ..++.+.+.|+|+|+++....
T Consensus 234 ~vid~~g-----~~---~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 234 VLLEFSG-----NE---AAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp EEEECSC-----CH---HHHHHHHHHEEEEEEEEECCC
T ss_pred EEEECCC-----CH---HHHHHHHHHHhcCCEEEEEec
Confidence 7765322 22 357888999999999988653
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=89.18 E-value=2.9 Score=30.21 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=56.3
Q ss_pred CeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCCCEEEechhhhcCChHHHH
Q 030025 23 KQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNGDAILIKWILHDWSDEHCL 98 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~~~l~~~~~~~~~ 98 (184)
++||=.|+ |.++..+++.. .+.++++++. +.-..... ..+++++.+|+.+ .....|+|+.........++...
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~~~~~ 82 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR-ASGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVLA 82 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH-HTTEEEEESSSSCCCCTTCCEEEECCCCBTTBCHHHH
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh-hCCCeEEEecccccccCCCCEEEECCCccccccHHHH
Confidence 68999994 88887777663 3468888876 33221111 1578999999887 42223888776655443344444
Q ss_pred HHHHHHHhhCCCCcEEEEEee
Q 030025 99 KLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 99 ~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.+++.+.+.-..-++++....
T Consensus 83 ~l~~a~~~~~~~~~~~v~~Ss 103 (286)
T 3ius_A 83 ALGDQIAARAAQFRWVGYLST 103 (286)
T ss_dssp HHHHHHHHTGGGCSEEEEEEE
T ss_pred HHHHHHHhhcCCceEEEEeec
Confidence 556555553123356666554
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=88.75 E-value=0.16 Score=38.73 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=57.8
Q ss_pred HhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc----ccCccCCCC-CEEEech
Q 030025 15 AYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG----DMFQSVPNG-DAILIKW 87 (184)
Q Consensus 15 ~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~----d~~~~~~~~-D~i~~~~ 87 (184)
... +++..+||-+|+| .|..+..+++.. +.++++++. +.-++.+++..--..+.. |..+..... |+|+-..
T Consensus 174 ~~~-~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~ 251 (360)
T 1piw_A 174 RNG-CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCA 251 (360)
T ss_dssp HTT-CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred HcC-CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECC
Confidence 345 7888999999986 477777777765 568889986 555555544321122221 111112223 8886543
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.-. + + ..++.+.+.|+|||+++....
T Consensus 252 g~~--~-~---~~~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 252 SSL--T-D---IDFNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp SCS--T-T---CCTTTGGGGEEEEEEEEECCC
T ss_pred CCC--c-H---HHHHHHHHHhcCCCEEEEecC
Confidence 220 0 1 236667889999999987543
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.71 E-value=0.66 Score=35.64 Aligned_cols=93 Identities=19% Similarity=0.083 Sum_probs=58.1
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc------cCc---cC-C-CC-CEEE
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD------MFQ---SV-P-NG-DAIL 84 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d------~~~---~~-~-~~-D~i~ 84 (184)
+.+..+||-+|+| .|..+..+++.....++++++. +.-++.+++..--.++..+ +.+ .. + .. |+|+
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvi 272 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 272 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEE
Confidence 5667899999966 5777778887763258999996 6666666544211222221 111 11 1 23 8776
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
-... .+ ..++.+.+.|+|+|++++...
T Consensus 273 d~~g-----~~---~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 273 EATG-----DS---RALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp ECSS-----CT---THHHHHHHHEEEEEEEEECCC
T ss_pred ECCC-----CH---HHHHHHHHHHhcCCEEEEEec
Confidence 5322 11 347888899999999988654
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=88.60 E-value=1.5 Score=32.99 Aligned_cols=94 Identities=15% Similarity=0.215 Sum_probs=59.5
Q ss_pred HHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cC-------CCC-CE
Q 030025 14 EAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SV-------PNG-DA 82 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~-------~~~-D~ 82 (184)
.... +.+..+||-+|+| .|..+..+++.. +.++++++. +.-++.+++. +.... .|..+ .+ ... |+
T Consensus 158 ~~~~-~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l-Ga~~~-~d~~~~~~~~~~~~~~~~~d~ 233 (339)
T 1rjw_A 158 KVTG-AKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKEL-GADLV-VNPLKEDAAKFMKEKVGGVHA 233 (339)
T ss_dssp HHHT-CCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT-TCSEE-ECTTTSCHHHHHHHHHSSEEE
T ss_pred HhcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHC-CCCEE-ecCCCccHHHHHHHHhCCCCE
Confidence 3445 7888999999985 577777777765 569999996 6555555443 22221 12221 11 023 77
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
++-... .+ ..++.+.+.|+|+|++++...
T Consensus 234 vid~~g-----~~---~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 234 AVVTAV-----SK---PAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp EEESSC-----CH---HHHHHHHHHEEEEEEEEECCC
T ss_pred EEECCC-----CH---HHHHHHHHHhhcCCEEEEecc
Confidence 765322 22 357888999999999988543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.44 E-value=3.5 Score=26.40 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=40.1
Q ss_pred CCeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc-------CCCCCEEEech
Q 030025 22 IKQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS-------VPNGDAILIKW 87 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~ 87 (184)
.++|+=+|+| .++..+++.. .+.+++++|. ++.++.+++ .++.++.+|..++ ....|+|++..
T Consensus 6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~ 78 (141)
T 3llv_A 6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLED-EGFDAVIADPTDESFYRSLDLEGVSAVLITG 78 (141)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEECCTTCHHHHHHSCCTTCSEEEECC
T ss_pred CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-CCCcEEECCCCCHHHHHhCCcccCCEEEEec
Confidence 4578999885 4555555442 2568899998 666555443 3578888998762 12338877643
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=88.09 E-value=1.9 Score=32.74 Aligned_cols=92 Identities=12% Similarity=0.119 Sum_probs=59.3
Q ss_pred CCCCCeEEEec--CCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc---cCcc----CCCC-CEEEech
Q 030025 19 FEHIKQLVDVG--GSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD---MFQS----VPNG-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG--~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d---~~~~----~~~~-D~i~~~~ 87 (184)
+++..+||-.| +|.|..+..+++.. ++++++++. ++-++.+++..--..+..+ +.+. .+.. |+++-..
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~ 239 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESV 239 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECC
Confidence 77889999999 56788888888876 568999987 5555555543211122111 1110 1223 8776543
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
. . ..++.+.+.|+|+|++++....
T Consensus 240 g-----~----~~~~~~~~~l~~~G~iv~~g~~ 263 (362)
T 2c0c_A 240 G-----G----AMFDLAVDALATKGRLIVIGFI 263 (362)
T ss_dssp C-----T----HHHHHHHHHEEEEEEEEECCCG
T ss_pred C-----H----HHHHHHHHHHhcCCEEEEEeCC
Confidence 2 1 3578889999999999886543
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=88.07 E-value=5.3 Score=28.09 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=55.0
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCC--CCeEEEeec-hhHhhhCCCCCCceEEEcccCcc-------CCCCCEEEechhh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYP--HIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS-------VPNGDAILIKWIL 89 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~--~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~~l 89 (184)
....+|+=+|+ |..+..+++... +. ++++|. +..++.++ .++.++.+|..++ ...+|.+++..
T Consensus 7 ~~~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~-- 79 (234)
T 2aef_A 7 AKSRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVDL-- 79 (234)
T ss_dssp ---CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEECC--
T ss_pred CCCCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEcC--
Confidence 34578888887 677777777753 24 788887 66555554 5689999998862 22348887642
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
++++.-.......+.+.|+.+++.
T Consensus 80 ---~~d~~n~~~~~~a~~~~~~~~iia 103 (234)
T 2aef_A 80 ---ESDSETIHCILGIRKIDESVRIIA 103 (234)
T ss_dssp ---SCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred ---CCcHHHHHHHHHHHHHCCCCeEEE
Confidence 333333445556666788767665
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=88.05 E-value=0.69 Score=34.87 Aligned_cols=96 Identities=9% Similarity=0.090 Sum_probs=57.5
Q ss_pred HHhcCCCCCCeEEEecCC--cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc---c----C-CCC-C
Q 030025 14 EAYKGFEHIKQLVDVGGS--LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ---S----V-PNG-D 81 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G--~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~----~-~~~-D 81 (184)
+... +++..+||-+|+| .|..+..+++.. ++++++++. +.-++.+++..--..+...-.+ . . +.. |
T Consensus 138 ~~~~-~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~D 215 (340)
T 3gms_A 138 ETLN-LQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGAD 215 (340)
T ss_dssp TTSC-CCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred Hhcc-cCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCc
Confidence 4444 7888999999986 678888888765 568999986 5555555443211122111111 0 1 123 7
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+++-+. ..+. +....+.|+|+|++++....
T Consensus 216 vvid~~-----g~~~----~~~~~~~l~~~G~iv~~G~~ 245 (340)
T 3gms_A 216 AAIDSI-----GGPD----GNELAFSLRPNGHFLTIGLL 245 (340)
T ss_dssp EEEESS-----CHHH----HHHHHHTEEEEEEEEECCCT
T ss_pred EEEECC-----CChh----HHHHHHHhcCCCEEEEEeec
Confidence 776532 2222 23445899999999986543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=86.52 E-value=0.51 Score=35.04 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=33.0
Q ss_pred CceEEEcccCc---cCCC-C-CEEEechhhhcCC--------------h----HHHHHHHHHHHhhCCCCcEEEEE
Q 030025 65 GVKHVGGDMFQ---SVPN-G-DAILIKWILHDWS--------------D----EHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 65 ~i~~~~~d~~~---~~~~-~-D~i~~~~~l~~~~--------------~----~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
++.++++|..+ .++. . |+|++.-...... . .....+++++.++|+|||.+++.
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~ 96 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV 96 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 45677777765 2332 2 7777754432110 0 11235788999999999999884
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=86.13 E-value=4.5 Score=29.77 Aligned_cols=96 Identities=13% Similarity=-0.009 Sum_probs=51.3
Q ss_pred HHHHHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc-cCccCCCCCEEEech
Q 030025 11 KILEAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD-MFQSVPNGDAILIKW 87 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d-~~~~~~~~D~i~~~~ 87 (184)
.++.....--+.++|+=||+| .|......+..+ +.++++.|. +.-.+.+.+ .++.....+ ..+.....|+|+...
T Consensus 144 ~~l~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~dr~~~~~~~~~~-~g~~~~~~~~l~~~l~~aDvVi~~~ 221 (293)
T 3d4o_A 144 MAIQHTDFTIHGANVAVLGLGRVGMSVARKFAAL-GAKVKVGARESDLLARIAE-MGMEPFHISKAAQELRDVDVCINTI 221 (293)
T ss_dssp HHHHHCSSCSTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH-TTSEEEEGGGHHHHTTTCSEEEECC
T ss_pred HHHHhcCCCCCCCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH-CCCeecChhhHHHHhcCCCEEEECC
Confidence 344444311256899999876 333333333444 468999997 443332222 234433222 212344559998877
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
..+.+.. +..+.+|||+.++-
T Consensus 222 p~~~i~~--------~~l~~mk~~~~lin 242 (293)
T 3d4o_A 222 PALVVTA--------NVLAEMPSHTFVID 242 (293)
T ss_dssp SSCCBCH--------HHHHHSCTTCEEEE
T ss_pred ChHHhCH--------HHHHhcCCCCEEEE
Confidence 6654432 13346889887654
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.12 E-value=1.4 Score=33.49 Aligned_cols=88 Identities=19% Similarity=0.173 Sum_probs=56.0
Q ss_pred CCCCCeEEEecC--CcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-c--------CC-CC-CEEE
Q 030025 19 FEHIKQLVDVGG--SLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-S--------VP-NG-DAIL 84 (184)
Q Consensus 19 ~~~~~~ilDiG~--G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~--------~~-~~-D~i~ 84 (184)
+++..+||-.|+ |.|..+..+++.. ++++++++. ++-++.+++.. .... .|..+ . .. .. |+++
T Consensus 168 ~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~g-a~~~-~d~~~~~~~~~~~~~~~~~~~D~vi 244 (351)
T 1yb5_A 168 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNG-AHEV-FNHREVNYIDKIKKYVGEKGIDIII 244 (351)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTT-CSEE-EETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred CCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHcC-CCEE-EeCCCchHHHHHHHHcCCCCcEEEE
Confidence 778899999996 5677777777765 568999986 55555554432 2211 12211 1 11 13 7776
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
-+.. . ..+....+.|+|+|++++..
T Consensus 245 ~~~G-----~----~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 245 EMLA-----N----VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp ESCH-----H----HHHHHHHHHEEEEEEEEECC
T ss_pred ECCC-----h----HHHHHHHHhccCCCEEEEEe
Confidence 5432 1 24677889999999999865
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=85.75 E-value=1.1 Score=34.70 Aligned_cols=104 Identities=8% Similarity=0.090 Sum_probs=59.9
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEe-ec-hhHhhhCCCCCCceEEEcccCccCCCC-CEE
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINF-DL-PHVIQHSPEYPGVKHVGGDMFQSVPNG-DAI 83 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~-D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~-D~i 83 (184)
...+.+++++. +...+||.++-+.|.++..+... .+++.+ |. +......+ +++.....+-.+..+.. |+|
T Consensus 33 ~~~~~l~~~~~--~~~~~~l~~n~~~g~~~~~~~~~---~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~d~v 105 (381)
T 3dmg_A 33 PVHDLLQKTVE--PFGERALDLNPGVGWGSLPLEGR---MAVERLETSRAAFRCLTA--SGLQARLALPWEAAAGAYDLV 105 (381)
T ss_dssp HHHHHHHTTCC--CCSSEEEESSCTTSTTTGGGBTT---BEEEEEECBHHHHHHHHH--TTCCCEECCGGGSCTTCEEEE
T ss_pred hHHHHHHHHHH--HhCCcEEEecCCCCccccccCCC---CceEEEeCcHHHHHHHHH--cCCCccccCCccCCcCCCCEE
Confidence 44556667765 34479999999999988666432 344444 33 33222221 22222212222233344 888
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
++...=+ -........|.++.+.|+|||.+++..
T Consensus 106 ~~~~Pk~-k~~~~~~~~l~~~~~~l~~g~~i~~~g 139 (381)
T 3dmg_A 106 VLALPAG-RGTAYVQASLVAAARALRMGGRLYLAG 139 (381)
T ss_dssp EEECCGG-GCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCcc-hhHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 7743311 011245678999999999999998764
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=85.54 E-value=5.9 Score=28.65 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=46.6
Q ss_pred eEEEecCCc-C-hHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCce-EEEcccCccCCCCCEEEechhhhcCChHHHHH
Q 030025 24 QLVDVGGSL-G-NTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVK-HVGGDMFQSVPNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 24 ~ilDiG~G~-G-~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~-~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
+|.=||||. | .++..+.+. +.+++++|. ++..+.+++. ++. ....|..+. ...|+|++.-. +.....
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~~~D~vi~av~-----~~~~~~ 72 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVER-QLVDEAGQDLSLL-QTAKIIFLCTP-----IQLILP 72 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-TSCSEEESCGGGG-TTCSEEEECSC-----HHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHhC-CCCccccCCHHHh-CCCCEEEEECC-----HHHHHH
Confidence 567788763 2 233333332 347888887 5555444322 221 112232223 34499887443 334457
Q ss_pred HHHHHHhhCCCCcEEEE
Q 030025 100 LLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 100 ~l~~~~~~L~pgG~l~i 116 (184)
+++++...++|+..++-
T Consensus 73 ~~~~l~~~~~~~~~vv~ 89 (279)
T 2f1k_A 73 TLEKLIPHLSPTAIVTD 89 (279)
T ss_dssp HHHHHGGGSCTTCEEEE
T ss_pred HHHHHHhhCCCCCEEEE
Confidence 88999889988876543
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=85.25 E-value=0.55 Score=36.95 Aligned_cols=45 Identities=11% Similarity=0.188 Sum_probs=30.5
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-----CCeEEEeec
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-----HIKGINFDL 53 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-----~~~~~~~D~ 53 (184)
+...+++.+. ....-+|+|+|+|+|.++..+++... ..++..++.
T Consensus 125 la~~~~~~~~-~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~ 174 (432)
T 4f3n_A 125 LARPVAQALD-ASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDL 174 (432)
T ss_dssp HHHHHHHHHH-HHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECT
T ss_pred HHHHHHHHHH-hcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 3444444443 11257999999999999888875431 247888987
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=85.16 E-value=1.1 Score=33.85 Aligned_cols=90 Identities=8% Similarity=0.106 Sum_probs=58.0
Q ss_pred CCCCCeEEEecC--CcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-c--------CC-CC-CEEE
Q 030025 19 FEHIKQLVDVGG--SLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-S--------VP-NG-DAIL 84 (184)
Q Consensus 19 ~~~~~~ilDiG~--G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~--------~~-~~-D~i~ 84 (184)
+++..+||-+|+ |.|..+..+++.. +.++++++. +.-++.+++.. ...+ .|..+ . .+ .. |+++
T Consensus 164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~g-a~~~-~d~~~~~~~~~~~~~~~~~~~d~vi 240 (343)
T 2eih_A 164 VRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKALG-ADET-VNYTHPDWPKEVRRLTGGKGADKVV 240 (343)
T ss_dssp CCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHT-CSEE-EETTSTTHHHHHHHHTTTTCEEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcC-CCEE-EcCCcccHHHHHHHHhCCCCceEEE
Confidence 678899999997 6788888888775 568999887 55555554321 2211 12221 1 11 23 8776
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
-... . ..++.+.+.|+|+|+++.....
T Consensus 241 ~~~g-~--------~~~~~~~~~l~~~G~~v~~g~~ 267 (343)
T 2eih_A 241 DHTG-A--------LYFEGVIKATANGGRIAIAGAS 267 (343)
T ss_dssp ESSC-S--------SSHHHHHHHEEEEEEEEESSCC
T ss_pred ECCC-H--------HHHHHHHHhhccCCEEEEEecC
Confidence 6433 1 2477788999999999886543
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=84.72 E-value=1.2 Score=33.80 Aligned_cols=96 Identities=10% Similarity=0.041 Sum_probs=56.3
Q ss_pred HHhcCCC-CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCC-CCCCceEEEccc---CccCCCC-CEEEe
Q 030025 14 EAYKGFE-HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSP-EYPGVKHVGGDM---FQSVPNG-DAILI 85 (184)
Q Consensus 14 ~~~~~~~-~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~-~~~~i~~~~~d~---~~~~~~~-D~i~~ 85 (184)
.... .. +..+||-+|+| .|..+..+++.. ++++++++. ++-++.++ +..--.++..+- ....... |+|+-
T Consensus 173 ~~~~-~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid 250 (357)
T 2cf5_A 173 SHFG-LKQPGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVID 250 (357)
T ss_dssp HHTS-TTSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEE
T ss_pred HhcC-CCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEE
Confidence 3445 66 78899999976 466667777665 468899987 55555554 331111121111 0111223 77765
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
...- + ..++...+.|+|+|+++....
T Consensus 251 ~~g~-----~---~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 251 TVPV-----H---HALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp CCCS-----C---CCSHHHHTTEEEEEEEEECSC
T ss_pred CCCC-----h---HHHHHHHHHhccCCEEEEeCC
Confidence 3221 1 135667789999999988654
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=84.65 E-value=1.8 Score=32.35 Aligned_cols=92 Identities=10% Similarity=0.007 Sum_probs=57.7
Q ss_pred CCCCCeEEEec--CCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc---c----CC-CC-CEEEec
Q 030025 19 FEHIKQLVDVG--GSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ---S----VP-NG-DAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG--~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~----~~-~~-D~i~~~ 86 (184)
+++..+||-.| +|.|..+..+++.. ++++++++. +.-++.+++..--..+..+-.+ . .+ .. |+++-+
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~ 216 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDG 216 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEES
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEEC
Confidence 77889999998 34778888787765 568999986 6655655543211222111111 0 11 23 777653
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.. . ..+..+.+.|+|+|++++....
T Consensus 217 ~g-----~----~~~~~~~~~l~~~G~iv~~g~~ 241 (325)
T 3jyn_A 217 VG-----Q----DTWLTSLDSVAPRGLVVSFGNA 241 (325)
T ss_dssp SC-----G----GGHHHHHTTEEEEEEEEECCCT
T ss_pred CC-----h----HHHHHHHHHhcCCCEEEEEecC
Confidence 32 1 2477888999999999987643
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=84.21 E-value=1 Score=34.00 Aligned_cols=91 Identities=11% Similarity=0.115 Sum_probs=57.1
Q ss_pred CCCCCeEEEecC--CcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc--cCcc----CCC-C-CEEEech
Q 030025 19 FEHIKQLVDVGG--SLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD--MFQS----VPN-G-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~--G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d--~~~~----~~~-~-D~i~~~~ 87 (184)
+++..+||-.|+ |.|..+..+++.. ++++++++. +.-++.+++..--..+..+ ..+. .+. . |+++-..
T Consensus 157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~ 235 (342)
T 4eye_A 157 LRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPI 235 (342)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECC
Confidence 778899999996 5688888888876 568999987 6555555543222222222 1111 122 3 7776533
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. . ..++.+.+.|+|+|++++...
T Consensus 236 g-----~----~~~~~~~~~l~~~G~iv~~G~ 258 (342)
T 4eye_A 236 G-----G----PAFDDAVRTLASEGRLLVVGF 258 (342)
T ss_dssp C-----------CHHHHHHTEEEEEEEEEC--
T ss_pred c-----h----hHHHHHHHhhcCCCEEEEEEc
Confidence 2 1 147788899999999998654
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=84.08 E-value=2.2 Score=32.31 Aligned_cols=94 Identities=15% Similarity=0.023 Sum_probs=58.4
Q ss_pred HHhcCCCCC------CeEEEecCC-cChHH-HHHH-hhCCCCe-EEEeec-hh---HhhhCCCCCCceEEEcccCc-cC-
Q 030025 14 EAYKGFEHI------KQLVDVGGS-LGNTL-KAIT-SKYPHIK-GINFDL-PH---VIQHSPEYPGVKHVGGDMFQ-SV- 77 (184)
Q Consensus 14 ~~~~~~~~~------~~ilDiG~G-~G~~~-~~l~-~~~~~~~-~~~~D~-~~---~~~~a~~~~~i~~~~~d~~~-~~- 77 (184)
+... +++. .+||-+|+| .|..+ ..++ +.. ..+ +++++. ++ -++.+++. +.+.+ |..+ ++
T Consensus 160 ~~~~-~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~l-Ga~~v--~~~~~~~~ 234 (357)
T 2b5w_A 160 EHAY-ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEEL-DATYV--DSRQTPVE 234 (357)
T ss_dssp HHHH-HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHT-TCEEE--ETTTSCGG
T ss_pred HhcC-CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHc-CCccc--CCCccCHH
Confidence 3344 5566 899999975 46667 7777 654 455 899987 55 56666543 33433 3332 11
Q ss_pred -----CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 78 -----PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 78 -----~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
... |+|+-.. ..+ ..++.+.+.|+|+|+++.....
T Consensus 235 ~i~~~~gg~Dvvid~~-----g~~---~~~~~~~~~l~~~G~iv~~g~~ 275 (357)
T 2b5w_A 235 DVPDVYEQMDFIYEAT-----GFP---KHAIQSVQALAPNGVGALLGVP 275 (357)
T ss_dssp GHHHHSCCEEEEEECS-----CCH---HHHHHHHHHEEEEEEEEECCCC
T ss_pred HHHHhCCCCCEEEECC-----CCh---HHHHHHHHHHhcCCEEEEEeCC
Confidence 113 7765422 222 3588889999999999986543
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=83.94 E-value=5.3 Score=28.69 Aligned_cols=88 Identities=14% Similarity=0.125 Sum_probs=48.6
Q ss_pred CCeEEEecCCc-C-hHHHHHHhhCCCCe-EEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHH
Q 030025 22 IKQLVDVGGSL-G-NTLKAITSKYPHIK-GINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHC 97 (184)
Q Consensus 22 ~~~ilDiG~G~-G-~~~~~l~~~~~~~~-~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~ 97 (184)
..+|.=||+|. | .++..+.+. +.+ +...|. ++..+...+.-++.. ..|..+...+.|+|+..-. +...
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~--g~~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~Dvvi~av~-----~~~~ 81 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRK--GFRIVQVYSRTEESARELAQKVEAEY-TTDLAEVNPYAKLYIVSLK-----DSAF 81 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSHHHHHHHHHHTTCEE-ESCGGGSCSCCSEEEECCC-----HHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCce-eCCHHHHhcCCCEEEEecC-----HHHH
Confidence 35788899872 3 333344443 234 777886 554443322223332 2233333334598887443 3333
Q ss_pred HHHHHHHHhhCCCCcEEEEE
Q 030025 98 LKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i~ 117 (184)
..+++++...++||..++-.
T Consensus 82 ~~v~~~l~~~~~~~~ivv~~ 101 (266)
T 3d1l_A 82 AELLQGIVEGKREEALMVHT 101 (266)
T ss_dssp HHHHHHHHTTCCTTCEEEEC
T ss_pred HHHHHHHHhhcCCCcEEEEC
Confidence 57788888888887765543
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=83.87 E-value=2.8 Score=31.00 Aligned_cols=86 Identities=12% Similarity=-0.005 Sum_probs=48.0
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc-ccCccCCCCCEEEechhhhcCChHHH
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG-DMFQSVPNGDAILIKWILHDWSDEHC 97 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~-d~~~~~~~~D~i~~~~~l~~~~~~~~ 97 (184)
+.++|+=||+| .|......+..+ +.++++.|. +.-.+.+.+ .++..... +..+....+|+|+.....+.+..
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~d~~~~~~~~~~~-~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~--- 230 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAAL-GANVKVGARSSAHLARITE-MGLVPFHTDELKEHVKDIDICINTIPSMILNQ--- 230 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH-TTCEEEEGGGHHHHSTTCSEEEECCSSCCBCH---
T ss_pred CCCEEEEEcccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH-CCCeEEchhhHHHHhhCCCEEEECCChhhhCH---
Confidence 56899999986 333333333444 468999997 443332211 13333322 22223445599998777654432
Q ss_pred HHHHHHHHhhCCCCcEEEE
Q 030025 98 LKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i 116 (184)
+..+.+|||+.++=
T Consensus 231 -----~~~~~mk~g~~lin 244 (300)
T 2rir_A 231 -----TVLSSMTPKTLILD 244 (300)
T ss_dssp -----HHHTTSCTTCEEEE
T ss_pred -----HHHHhCCCCCEEEE
Confidence 13467899886654
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=83.80 E-value=6.5 Score=31.05 Aligned_cols=93 Identities=12% Similarity=0.153 Sum_probs=47.1
Q ss_pred CeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCC------CCce-----------E-EEcccCccCCCCC
Q 030025 23 KQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEY------PGVK-----------H-VGGDMFQSVPNGD 81 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~------~~i~-----------~-~~~d~~~~~~~~D 81 (184)
-+|-=||.| ++...++..+ .+.+++++|. +.-++..++. +++. + ...|..+....+|
T Consensus 9 ~~~~vIGlG--~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aD 86 (446)
T 4a7p_A 9 VRIAMIGTG--YVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDAD 86 (446)
T ss_dssp CEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCS
T ss_pred eEEEEEcCC--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCC
Confidence 355566665 4443333321 2468999998 6655544432 1111 1 1122222233458
Q ss_pred EEEech--hh---hcCCh-HHHHHHHHHHHhhCCCCcEEEEE
Q 030025 82 AILIKW--IL---HDWSD-EHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 82 ~i~~~~--~l---~~~~~-~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+|++.- .. +.-+| .....+++.+.+.|+||-.++..
T Consensus 87 vvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~ 128 (446)
T 4a7p_A 87 AVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTK 128 (446)
T ss_dssp EEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEEC
T ss_pred EEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 887742 11 10000 12446788899999988766553
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=83.79 E-value=0.53 Score=34.83 Aligned_cols=90 Identities=9% Similarity=0.099 Sum_probs=55.7
Q ss_pred CCCCCeEEEecC--CcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc----ccCccCCCCCEEEechhhhc
Q 030025 19 FEHIKQLVDVGG--SLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG----DMFQSVPNGDAILIKWILHD 91 (184)
Q Consensus 19 ~~~~~~ilDiG~--G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~----d~~~~~~~~D~i~~~~~l~~ 91 (184)
+++..+||-+|+ |.|..+..+++.. +.++++++. +.-++.+++..--..+.. |..+.....|+++- ..
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g--- 197 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VR--- 197 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CS---
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CC---
Confidence 667889999997 4678888888776 468999987 555555544321112211 11112222287775 22
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. ..++.+.+.|+|+|+++....
T Consensus 198 --~----~~~~~~~~~l~~~G~~v~~g~ 219 (302)
T 1iz0_A 198 --G----KEVEESLGLLAHGGRLVYIGA 219 (302)
T ss_dssp --C----TTHHHHHTTEEEEEEEEEC--
T ss_pred --H----HHHHHHHHhhccCCEEEEEeC
Confidence 1 137788899999999987654
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=83.39 E-value=4.6 Score=31.17 Aligned_cols=96 Identities=14% Similarity=0.033 Sum_probs=54.6
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc---ccCc---c--CCCC-CEEEech
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG---DMFQ---S--VPNG-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~---d~~~---~--~~~~-D~i~~~~ 87 (184)
+++..+||=+|+| .|..+..+++.....+++++|. +.-++.+++..--..+.. |..+ . -+.. |+|+-..
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~ 290 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEAT 290 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECC
Confidence 6778899999986 3777777777764338999987 666666655421112211 1111 0 1123 8887532
Q ss_pred hhhcCChH--HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDE--HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~--~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..+ ....+++.+.+.++|+|++++...
T Consensus 291 -----g~~~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 291 -----GVPQLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp -----SCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred -----CCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 222 111223333344599999998654
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.28 E-value=1.4 Score=32.83 Aligned_cols=89 Identities=9% Similarity=-0.031 Sum_probs=55.6
Q ss_pred CCCCCeEEEec--CCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-c--------C-CCC-CEEE
Q 030025 19 FEHIKQLVDVG--GSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-S--------V-PNG-DAIL 84 (184)
Q Consensus 19 ~~~~~~ilDiG--~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~--------~-~~~-D~i~ 84 (184)
+++..+||-.| +|.|..+..+++.. +.++++++. ++-++.+++.. .... .|..+ . . +.. |+++
T Consensus 138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~g-~~~~-~~~~~~~~~~~~~~~~~~~~~D~vi 214 (327)
T 1qor_A 138 IKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAG-AWQV-INYREEDLVERLKEITGGKKVRVVY 214 (327)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHT-CSEE-EETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcC-CCEE-EECCCccHHHHHHHHhCCCCceEEE
Confidence 77889999999 45677777777664 468888887 55555544321 2111 12211 1 1 123 7776
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.+.. . ..++.+.+.|+++|++++...
T Consensus 215 ~~~g-----~----~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 215 DSVG-----R----DTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp ECSC-----G----GGHHHHHHTEEEEEEEEECCC
T ss_pred ECCc-----h----HHHHHHHHHhcCCCEEEEEec
Confidence 5432 1 347888899999999988654
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=83.17 E-value=3.1 Score=31.33 Aligned_cols=95 Identities=17% Similarity=0.090 Sum_probs=57.5
Q ss_pred HHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCC-eEEEeec-hhHhhhCCCCCCceEEEc---ccCc---cC--CCC-C
Q 030025 14 EAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHI-KGINFDL-PHVIQHSPEYPGVKHVGG---DMFQ---SV--PNG-D 81 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~i~~~~~---d~~~---~~--~~~-D 81 (184)
+... + +..+||-+|+| .|..+..+++.. +. ++++++. +.-++.+++..--..+.. |+.+ .. +.. |
T Consensus 162 ~~~~-~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D 238 (348)
T 2d8a_A 162 LAGP-I-SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVD 238 (348)
T ss_dssp TTSC-C-TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEE
T ss_pred HhcC-C-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCC
Confidence 3344 6 78899999986 467777777765 45 8888886 555555543321111111 1111 01 123 7
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+|+-... .+ ..++.+.+.|+|+|+++....
T Consensus 239 ~vid~~g-----~~---~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 239 VFLEFSG-----AP---KALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp EEEECSC-----CH---HHHHHHHHHEEEEEEEEECCC
T ss_pred EEEECCC-----CH---HHHHHHHHHHhcCCEEEEEcc
Confidence 7765332 12 357888999999999988654
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=83.15 E-value=0.64 Score=34.62 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=55.9
Q ss_pred HHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCC-CEEEechhhhc
Q 030025 14 EAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNG-DAILIKWILHD 91 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~-D~i~~~~~l~~ 91 (184)
+... +++..+||-+|+| .|..+..+++.. ++++++++.+.-++.+++. +...+..| .+..+.. |+|+-...
T Consensus 136 ~~~~-~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~l-Ga~~v~~d-~~~v~~g~Dvv~d~~g--- 208 (315)
T 3goh_A 136 EKIP-LTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVSASLSQALAAKR-GVRHLYRE-PSQVTQKYFAIFDAVN--- 208 (315)
T ss_dssp TTSC-CCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSCCHHHHHHH-TEEEEESS-GGGCCSCEEEEECC-----
T ss_pred hhcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEEChhhHHHHHHc-CCCEEEcC-HHHhCCCccEEEECCC---
Confidence 4444 7788999999986 478888888775 4588888753333444332 23333234 3333444 87764321
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.+ .+..+.+.|+|+|+++...
T Consensus 209 --~~----~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 209 --SQ----NAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp -----------TTGGGEEEEEEEEEEC
T ss_pred --ch----hHHHHHHHhcCCCEEEEEe
Confidence 11 2366788999999999874
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=83.04 E-value=2.6 Score=32.09 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=55.3
Q ss_pred HHhcCCC-CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCC-CCCCceEEEcccCc-----cCCCC-CEE
Q 030025 14 EAYKGFE-HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSP-EYPGVKHVGGDMFQ-----SVPNG-DAI 83 (184)
Q Consensus 14 ~~~~~~~-~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~-~~~~i~~~~~d~~~-----~~~~~-D~i 83 (184)
.... .. +..+||-+|+| .|..+..+++.. +.++++++. +.-++.++ +. +...+ .|..+ ..... |+|
T Consensus 180 ~~~~-~~~~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~l-Ga~~v-~~~~~~~~~~~~~~~~D~v 255 (366)
T 1yqd_A 180 KYFG-LDEPGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNF-GADSF-LVSRDQEQMQAAAGTLDGI 255 (366)
T ss_dssp HHTT-CCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTS-CCSEE-EETTCHHHHHHTTTCEEEE
T ss_pred HhcC-cCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhc-CCceE-EeccCHHHHHHhhCCCCEE
Confidence 3445 66 78899999976 366666777665 568888886 55555544 33 22211 12111 11123 887
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+-..... ..++.+.+.|+|+|+++....
T Consensus 256 id~~g~~--------~~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 256 IDTVSAV--------HPLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp EECCSSC--------CCSHHHHHHEEEEEEEEECCC
T ss_pred EECCCcH--------HHHHHHHHHHhcCCEEEEEcc
Confidence 6533211 125566788899999988653
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.15 E-value=9.5 Score=28.41 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=45.9
Q ss_pred CeEEEecCCcChHHHHHHhh--CCC-CeEEEeec-h-------hHhhhCCCCCCceEEEc-ccCccCCCCCEEEechhhh
Q 030025 23 KQLVDVGGSLGNTLKAITSK--YPH-IKGINFDL-P-------HVIQHSPEYPGVKHVGG-DMFQSVPNGDAILIKWILH 90 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~--~~~-~~~~~~D~-~-------~~~~~a~~~~~i~~~~~-d~~~~~~~~D~i~~~~~l~ 90 (184)
.+|.=||+| .....++.. ..+ .++++.|. + ...+.+.+ .++ .. +..+-...+|+|++.-
T Consensus 25 m~IgvIG~G--~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~-~g~---~~~s~~e~~~~aDvVi~av--- 95 (317)
T 4ezb_A 25 TTIAFIGFG--EAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAE-LGV---EPLDDVAGIACADVVLSLV--- 95 (317)
T ss_dssp CEEEEECCS--HHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHH-TTC---EEESSGGGGGGCSEEEECC---
T ss_pred CeEEEECcc--HHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHH-CCC---CCCCHHHHHhcCCEEEEec---
Confidence 568888876 333333332 124 58889997 4 23332221 233 22 3333333459888743
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
+++...+.++.+...++||..++-
T Consensus 96 --p~~~~~~~~~~i~~~l~~~~ivv~ 119 (317)
T 4ezb_A 96 --VGAATKAVAASAAPHLSDEAVFID 119 (317)
T ss_dssp --CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred --CCHHHHHHHHHHHhhcCCCCEEEE
Confidence 333334567888889988876554
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=81.45 E-value=5.5 Score=29.02 Aligned_cols=84 Identities=14% Similarity=0.202 Sum_probs=47.7
Q ss_pred CeEEEecC-Cc-C-hHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHH
Q 030025 23 KQLVDVGG-SL-G-NTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCL 98 (184)
Q Consensus 23 ~~ilDiG~-G~-G-~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~ 98 (184)
.+|.=||+ |. | .++..+.+. +.+++++|. +...+.+.+. ++.. .+..+.....|+|+..- ++....
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~-g~~~--~~~~~~~~~aDvVi~av-----~~~~~~ 81 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDS--AHHLAAIEIAPEGRDRLQGM-GIPL--TDGDGWIDEADVVVLAL-----PDNIIE 81 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHS--SSEEEEECCSHHHHHHHHHT-TCCC--CCSSGGGGTCSEEEECS-----CHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHhc-CCCc--CCHHHHhcCCCEEEEcC-----CchHHH
Confidence 47888988 63 3 333333333 357888886 5444433322 2222 12222233449988744 333455
Q ss_pred HHHHHHHhhCCCCcEEEE
Q 030025 99 KLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 99 ~~l~~~~~~L~pgG~l~i 116 (184)
.+++++...++||..++-
T Consensus 82 ~v~~~l~~~l~~~~ivv~ 99 (286)
T 3c24_A 82 KVAEDIVPRVRPGTIVLI 99 (286)
T ss_dssp HHHHHHGGGSCTTCEEEE
T ss_pred HHHHHHHHhCCCCCEEEE
Confidence 788888888988776553
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=80.83 E-value=2.6 Score=31.73 Aligned_cols=88 Identities=10% Similarity=0.190 Sum_probs=54.0
Q ss_pred CCCeEEEec-CC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc--ccCc---cC-CCC-CEEEechhhh
Q 030025 21 HIKQLVDVG-GS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG--DMFQ---SV-PNG-DAILIKWILH 90 (184)
Q Consensus 21 ~~~~ilDiG-~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~--d~~~---~~-~~~-D~i~~~~~l~ 90 (184)
+..+||=+| +| .|..+..+++.. ++++++++. +.-++.+++..--..+.. |..+ .. +.. |+|+-..
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~--- 225 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTF--- 225 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESS---
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECC---
Confidence 678999994 43 677787788765 569999987 666666554321111111 1111 11 123 7776532
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
..+ ..++.+.+.|+|+|+++..
T Consensus 226 --g~~---~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 226 --NTD---MYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp --CHH---HHHHHHHHHEEEEEEEEES
T ss_pred --Cch---HHHHHHHHHhccCCEEEEE
Confidence 222 4578889999999999764
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=80.05 E-value=7.1 Score=26.73 Aligned_cols=93 Identities=11% Similarity=0.132 Sum_probs=50.7
Q ss_pred eEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc----CCCCCEEEechhhhcCChHH
Q 030025 24 QLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS----VPNGDAILIKWILHDWSDEH 96 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~----~~~~D~i~~~~~l~~~~~~~ 96 (184)
+||=.| |+|.+...+++.+ .+.++++++. +.-.+... ++++++.+|+.++ +...|+|+.......-....
T Consensus 2 kvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~ 78 (221)
T 3ew7_A 2 KIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEK 78 (221)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTS
T ss_pred eEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcCCccccch
Confidence 566665 4555555555442 3568888886 44443332 6899999999873 22238887755442211111
Q ss_pred HHHHHHHHHhhCCC--CcEEEEEee
Q 030025 97 CLKLLKNCHKSIPE--GGKVIVVES 119 (184)
Q Consensus 97 ~~~~l~~~~~~L~p--gG~l~i~~~ 119 (184)
.....+.+.+.++. .+++++...
T Consensus 79 ~~~~~~~l~~a~~~~~~~~~v~~SS 103 (221)
T 3ew7_A 79 HVTSLDHLISVLNGTVSPRLLVVGG 103 (221)
T ss_dssp HHHHHHHHHHHHCSCCSSEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCceEEEEec
Confidence 12333444444433 467776543
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=80.05 E-value=4.1 Score=30.39 Aligned_cols=89 Identities=8% Similarity=0.032 Sum_probs=56.5
Q ss_pred CCCCCeEEEecC--CcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-c--------C-CCC-CEEE
Q 030025 19 FEHIKQLVDVGG--SLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-S--------V-PNG-DAIL 84 (184)
Q Consensus 19 ~~~~~~ilDiG~--G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~--------~-~~~-D~i~ 84 (184)
+.+..+||-.|+ |.|..+..+++.. +.++++++. ++-++.+++.. .... .|..+ . . +.. |+++
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~g-~~~~-~d~~~~~~~~~i~~~~~~~~~d~vi 219 (333)
T 1wly_A 143 VKPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKLG-CHHT-INYSTQDFAEVVREITGGKGVDVVY 219 (333)
T ss_dssp CCTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHT-CSEE-EETTTSCHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC-CCEE-EECCCHHHHHHHHHHhCCCCCeEEE
Confidence 778899999994 6788887777775 568999987 54555544321 2211 12221 1 0 123 7776
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
-+.. . ..++.+.+.|+|+|+++....
T Consensus 220 ~~~g-----~----~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 220 DSIG-----K----DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp ECSC-----T----TTHHHHHHTEEEEEEEEECCC
T ss_pred ECCc-----H----HHHHHHHHhhccCCEEEEEec
Confidence 5332 1 247788899999999988654
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=80.02 E-value=2.7 Score=33.32 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=57.9
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHh-------hhCCCCCCceEEEcccCccCCCCCEEEechhhhcCC
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVI-------QHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWS 93 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~-------~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~ 93 (184)
+.++|.=||+|+=..+.++--+-..+.++.--.+... +.|.+ ++.. ..++.+..+.+|+|... +|
T Consensus 36 kgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~-~Gf~--v~~~~eA~~~ADvV~~L-----~P 107 (491)
T 3ulk_A 36 QGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE-NGFK--VGTYEELIPQADLVINL-----TP 107 (491)
T ss_dssp TTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHH-TTCE--EEEHHHHGGGCSEEEEC-----SC
T ss_pred cCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHH-CCCE--ecCHHHHHHhCCEEEEe-----CC
Confidence 4689999999998877777766556654433223322 22211 3333 33343334445988762 35
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
|+....+++++...|+||-.|.++.
T Consensus 108 D~~q~~vy~~I~p~lk~G~~L~faH 132 (491)
T 3ulk_A 108 DKQHSDVVRTVQPLMKDGAALGYSH 132 (491)
T ss_dssp GGGHHHHHHHHGGGSCTTCEEEESS
T ss_pred hhhHHHHHHHHHhhCCCCCEEEecC
Confidence 6655688999999999999999854
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 184 | ||||
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 8e-63 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 1e-53 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 2e-52 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 1e-23 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 2e-18 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 192 bits (488), Expect = 8e-63
Identities = 92/185 (49%), Positives = 125/185 (67%), Gaps = 2/185 (1%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M + ++++LE Y GFE I LVDVGG G L+ I SKYP IKGINFDLP VI+++
Sbjct: 61 MVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENA 120
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P G++HVGGDMF SVP GDA+++K + H+WSDE C++ L NCHK++ GKVI+VE +
Sbjct: 121 PPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI 180
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCF-FHNLWV 179
LPE P SK+ S D L+ GG+ERT+ ++ L+ +GFS + C F++L V
Sbjct: 181 LPEEPNTSEESKLVSTLDNLMFIT-VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGV 239
Query: 180 MEFYK 184
MEFYK
Sbjct: 240 MEFYK 244
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 169 bits (428), Expect = 1e-53
Identities = 63/186 (33%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M + + L+ + + F+ ++ +VDVGG G T K I +P +K I FD P V+++
Sbjct: 60 MASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL 119
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIP---EGGKVIVV 117
+ +VGGDMF S+PN DA+L+K+ILH+W+D+ CL++LK C +++ + GKV ++
Sbjct: 120 SGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII 179
Query: 118 ESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNL 177
+ V+ + + ++I L DV + GKER + E+ L EAGF + L
Sbjct: 180 DMVIDKKKDENQVTQIKLLMDVNMACL--NGKERNEEEWKKLFIEAGFQHYKISPLTGFL 237
Query: 178 WVMEFY 183
++E Y
Sbjct: 238 SLIEIY 243
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 165 bits (419), Expect = 2e-52
Identities = 102/182 (56%), Positives = 131/182 (71%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M +H+T+ ++KILE Y GFE +K LVDVGG G + I SKYP IKGINFDLPHVI+ +
Sbjct: 61 MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA 120
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P YPGV+HVGGDMF S+P DA+ +KWI HDWSDEHCLK LKNC++++P+ GKVIV E +
Sbjct: 121 PSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LP P++ +K DV+++ PGGKERT+ EF LA AGF G + C N ++M
Sbjct: 181 LPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIM 240
Query: 181 EF 182
EF
Sbjct: 241 EF 242
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 91.6 bits (226), Expect = 1e-23
Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 17/196 (8%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M L + +AY + ++ ++DVGG G L AI + PH++G +L + +
Sbjct: 62 MSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERA 120
Query: 61 PEYPGVKHVGG--------DMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGG 112
+ D +L+ ++L +WSDE L +L+ C +++ GG
Sbjct: 121 RRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGG 180
Query: 113 KVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRF-- 170
+++V++ +G ++L D+ ++T + GG+ RT+ E LA AG +
Sbjct: 181 RLLVLDRADV--EGDGADRFFSTLLDLRMLT-FMGGRVRTRDEVVDLAGSAGLALASERT 237
Query: 171 ---VCFFHNLWVMEFY 183
+ ++EF
Sbjct: 238 SGSTTLPFDFSILEFT 253
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 77.8 bits (190), Expect = 2e-18
Identities = 32/177 (18%), Positives = 75/177 (42%), Gaps = 13/177 (7%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
+ + AY + +++ ++DVGG G AI + PH+ ++ + +
Sbjct: 61 LACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTA 119
Query: 61 PEYPGVKHVGGDMF--------QSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGG 112
Y + + + DAI++ ++L +W D +++L C +++ GG
Sbjct: 120 RSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGG 179
Query: 113 KVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169
++++ E + ++ + D+ ++ + GG RT+ ++ LA AG
Sbjct: 180 RILIHERDDLH---ENSFNEQFTELDLRMLV-FLGGALRTREKWDGLAASAGLVVEE 232
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 184 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.98 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.98 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.97 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.94 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.94 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.93 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.92 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.92 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.92 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.92 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.9 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.9 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.89 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.89 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.88 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.88 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.87 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.85 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.85 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.84 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.83 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.82 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.82 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.81 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.79 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.78 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.78 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.76 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.76 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.76 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.75 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.74 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.71 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.7 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.7 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.7 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.7 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.69 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.68 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.68 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.65 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.65 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.62 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.61 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.6 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.6 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.57 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.55 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.47 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.46 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.45 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.42 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.42 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.35 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.32 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.25 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.16 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.11 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.1 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 99.08 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.06 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.04 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 99.03 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.03 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.98 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.98 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.97 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.95 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.94 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.91 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.86 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.82 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.8 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.78 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.77 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.76 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.76 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.76 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.75 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.74 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.71 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.68 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.65 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.62 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.59 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.59 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.53 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.52 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.48 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.11 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.06 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.04 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.98 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.93 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 97.85 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.82 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.67 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 97.6 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.48 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.43 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.35 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.19 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.14 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.89 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.89 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.89 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.82 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.78 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.75 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.57 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.5 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.44 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.43 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.35 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.23 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.0 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.88 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.85 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.52 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.36 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.18 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.82 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.64 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 94.59 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.51 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.03 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 93.5 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 93.48 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.42 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 92.79 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 92.33 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 92.33 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 91.77 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 91.67 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 91.56 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 91.35 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 91.28 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 91.24 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 91.18 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 91.17 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 91.05 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 90.56 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 89.82 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 89.6 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 87.84 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 87.13 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 85.92 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 85.85 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 85.42 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 83.52 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 82.68 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 81.27 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 80.97 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 80.26 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 80.1 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=3.1e-34 Score=209.31 Aligned_cols=183 Identities=50% Similarity=0.922 Sum_probs=157.9
Q ss_pred CCcccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCC
Q 030025 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNG 80 (184)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~ 80 (184)
|...+....+.+++.++.+++..+|||||||+|.++..+++++|+++++.+|+|+.++.+...++++++.+|+++++|.+
T Consensus 61 M~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~ 140 (244)
T d1fp1d2 61 MVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQG 140 (244)
T ss_dssp HHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCE
T ss_pred HHHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccc
Confidence 44566777888999887578899999999999999999999999999999999999988888899999999999988877
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLA 160 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (184)
|++++.+++|+|++++..++|+++++.|+|||+++|.|...++..............++.++... +++.+|.++|.++|
T Consensus 141 D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~-~g~ert~~e~~~ll 219 (244)
T d1fp1d2 141 DAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLS 219 (244)
T ss_dssp EEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHHHHHH
T ss_pred eEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhC-CCcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999988765444333323344555555433 68889999999999
Q ss_pred HHcCCceeEEEee-cCceEEEEEeC
Q 030025 161 TEAGFSGIRFVCF-FHNLWVMEFYK 184 (184)
Q Consensus 161 ~~aGf~~i~~~~~-~~~~~~~~~~~ 184 (184)
++|||+.++++.. .+..++||++|
T Consensus 220 ~~AGF~~v~v~~~~~~~~~viE~~K 244 (244)
T d1fp1d2 220 KLSGFSKFQVACRAFNSLGVMEFYK 244 (244)
T ss_dssp HHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HHcCCCceEEEecCCCCEEEEEEeC
Confidence 9999999999754 58889999998
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=3.5e-32 Score=198.78 Aligned_cols=183 Identities=56% Similarity=1.044 Sum_probs=157.7
Q ss_pred CCcccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCC
Q 030025 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNG 80 (184)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~ 80 (184)
|+..+......++..++.+++..+|||||||+|.++..+++++|+++++++|+|..++.++..+++.++.+|+++++|.+
T Consensus 61 M~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~a 140 (243)
T d1kyza2 61 MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKA 140 (243)
T ss_dssp HHHHHHHHHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCC
T ss_pred HhHhhhhHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCc
Confidence 34455667788888887345678999999999999999999999999999999989999888899999999999988888
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLA 160 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (184)
|++++.+++|+|++++...+|+++++.|+|||+++|.|...++..............++.++....+++.+|.++|.++|
T Consensus 141 d~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll 220 (243)
T d1kyza2 141 DAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLA 220 (243)
T ss_dssp SCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHH
T ss_pred ceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999988765444333333345667666655678889999999999
Q ss_pred HHcCCceeEEEeecCceEEEEEe
Q 030025 161 TEAGFSGIRFVCFFHNLWVMEFY 183 (184)
Q Consensus 161 ~~aGf~~i~~~~~~~~~~~~~~~ 183 (184)
++|||+.+++++.....++||.+
T Consensus 221 ~~AGf~~vkv~~~~~~~~viE~~ 243 (243)
T d1kyza2 221 KGAGFQGFKVHCNAFNTYIMEFL 243 (243)
T ss_dssp HHHCCSCEEEEEEETTEEEEEEC
T ss_pred HHcCCCcEEEEEeCCCCEEEEeC
Confidence 99999999999988999999863
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.98 E-value=2.2e-32 Score=201.42 Aligned_cols=179 Identities=27% Similarity=0.504 Sum_probs=146.0
Q ss_pred CCcccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEccc
Q 030025 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDM 73 (184)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~ 73 (184)
|...+...+..+++.++ +++.++|||||||+|.++..+++++|+++++++|++.+++.++++ +++.++.+|+
T Consensus 62 m~~~~~~~~~~~~~~~d-~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~ 140 (256)
T d1qzza2 62 MSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDF 140 (256)
T ss_dssp CGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHhhHHHHHHHHHhcCC-CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeec
Confidence 45566777888999998 999999999999999999999999999999999998777766542 6799999999
Q ss_pred CccCCCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccC
Q 030025 74 FQSVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERT 152 (184)
Q Consensus 74 ~~~~~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
.+++|.. |+|++.+++|++++++...+|+++++.|||||+++|.|...+..... ........++.++... +++.+|
T Consensus 141 ~~~~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~--~~~~~~~~d~~ml~~~-~g~~rt 217 (256)
T d1qzza2 141 FKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGA--DRFFSTLLDLRMLTFM-GGRVRT 217 (256)
T ss_dssp TSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHH-SCCCCC
T ss_pred cccccccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcc--cHHHHHHHHHHHHhhC-CCccCC
Confidence 9877765 99999999999999998999999999999999999999765443221 1122334455555443 678899
Q ss_pred HHHHHHHHHHcCCceeEEEeec-----CceEEEEEe
Q 030025 153 KHEFTTLATEAGFSGIRFVCFF-----HNLWVMEFY 183 (184)
Q Consensus 153 ~~~~~~~l~~aGf~~i~~~~~~-----~~~~~~~~~ 183 (184)
.++|.++|++|||+.++++..+ ..++++|+.
T Consensus 218 ~~e~~~ll~~AGf~~~~~~~~~~~~~~~~~~v~E~~ 253 (256)
T d1qzza2 218 RDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFT 253 (256)
T ss_dssp HHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEE
T ss_pred HHHHHHHHHHCCCceeEEEEeCCcCccCceEEEEEE
Confidence 9999999999999999998764 356888875
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.98 E-value=6.6e-32 Score=197.02 Aligned_cols=178 Identities=35% Similarity=0.656 Sum_probs=148.2
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEE
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAIL 84 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~ 84 (184)
+......+.+...+++...+|||||||+|.++..+++++|++++++.|+|+.++.+...++++++.+|++++++.+|+++
T Consensus 64 s~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~ 143 (244)
T d1fp2a2 64 SKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVL 143 (244)
T ss_dssp HHHHHHHHHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEE
T ss_pred hhhhhhhHhhhcccccCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEE
Confidence 33444444443222677889999999999999999999999999999999999988888999999999999877779999
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCC---cEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHH
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEG---GKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLAT 161 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pg---G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (184)
+.+++|+|+++++.++|+++++.|+|| |+++|.|...++.............+++.++. .+++.+|.++|.++|+
T Consensus 144 l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~--~~G~ert~~e~~~ll~ 221 (244)
T d1fp2a2 144 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC--LNGKERNEEEWKKLFI 221 (244)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG--GTCCCEEHHHHHHHHH
T ss_pred EEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh--CCCcCCCHHHHHHHHH
Confidence 999999999999999999999999999 88999998887654332222222334444443 3688899999999999
Q ss_pred HcCCceeEEEeecCceEEEEEeC
Q 030025 162 EAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 162 ~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
+|||+.+++++..+..++|+++|
T Consensus 222 ~AGf~~~~i~~~~~~~svIE~~p 244 (244)
T d1fp2a2 222 EAGFQHYKISPLTGFLSLIEIYP 244 (244)
T ss_dssp HTTCCEEEEEEEETTEEEEEEEC
T ss_pred HcCCceEEEEECCCCeEEEEEeC
Confidence 99999999999999999999987
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.97 E-value=4.9e-32 Score=199.34 Aligned_cols=169 Identities=22% Similarity=0.470 Sum_probs=139.1
Q ss_pred CCcccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEccc
Q 030025 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDM 73 (184)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~ 73 (184)
|+..+....+.+++.++ +++.++|||||||+|.++..+++++|+++++++|++++++.++++ ++++++.+|+
T Consensus 61 m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~ 139 (253)
T d1tw3a2 61 LACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF 139 (253)
T ss_dssp HTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccc
Confidence 44556777889999998 999999999999999999999999999999999997787777653 6799999999
Q ss_pred CccCCCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccC
Q 030025 74 FQSVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERT 152 (184)
Q Consensus 74 ~~~~~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
+++.+.. |+|++.+++||+++++..++|++++++|||||+|+|.|.......... ......++.++... +++.+|
T Consensus 140 ~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~---~~~~~~dl~~~~~~-~g~~rt 215 (253)
T d1tw3a2 140 FEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN---EQFTELDLRMLVFL-GGALRT 215 (253)
T ss_dssp TSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHH-SCCCCB
T ss_pred hhhcccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcch---hHHHHhhHHHHhhC-CCcCCC
Confidence 8866555 999999999999999888999999999999999999987654432211 12233444444433 677889
Q ss_pred HHHHHHHHHHcCCceeEEEeec
Q 030025 153 KHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 153 ~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
.++|.++|+++||+.++++..+
T Consensus 216 ~~e~~~ll~~AGf~~~~v~~~~ 237 (253)
T d1tw3a2 216 REKWDGLAASAGLVVEEVRQLP 237 (253)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEECC
Confidence 9999999999999999888654
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.94 E-value=1e-26 Score=168.24 Aligned_cols=153 Identities=18% Similarity=0.358 Sum_probs=119.9
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~~ 80 (184)
..++++..+ +.++.+|||||||+|.++..+++.. .+++++|+ +.|++.|+++ ++++++++|+.+ +++..
T Consensus 4 ~~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~ 80 (231)
T d1vl5a_ 4 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 80 (231)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccccccccccccccccccccccc
Confidence 457788888 9999999999999999999999885 58999999 8999887653 789999999998 76654
Q ss_pred --CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhH-hhhhCCCccccCHHHHH
Q 030025 81 --DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVL-VMTQYPGGKERTKHEFT 157 (184)
Q Consensus 81 --D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 157 (184)
|+|++..++||+++++ .++++++++|||||++++.++..+... ......... ..........++..+|.
T Consensus 81 ~fD~v~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (231)
T d1vl5a_ 81 RFHIVTCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDNSAPEND------AFDVFYNYVEKERDYSHHRAWKKSDWL 152 (231)
T ss_dssp CEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEBCSSH------HHHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred ccccccccccccccCCHH--HHHHHHHHhcCCCcEEEEEeCCCCCCH------HHHHHHHHHHhhcccCcccCCCHHHHH
Confidence 9999999999998775 789999999999999999988765421 111111111 11112234567899999
Q ss_pred HHHHHcCCceeEEEe
Q 030025 158 TLATEAGFSGIRFVC 172 (184)
Q Consensus 158 ~~l~~aGf~~i~~~~ 172 (184)
++|+++||+.+++..
T Consensus 153 ~~l~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 153 KMLEEAGFELEELHC 167 (231)
T ss_dssp HHHHHHTCEEEEEEE
T ss_pred HHHHHCCCEEEEEEE
Confidence 999999999887653
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.94 E-value=2e-26 Score=166.38 Aligned_cols=164 Identities=15% Similarity=0.165 Sum_probs=121.9
Q ss_pred CCCCCeEEEecCCcChHHHHHHhh--CCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCCCCEEEech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSK--YPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPNGDAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~--~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~D~i~~~~ 87 (184)
.++..+|||||||+|..+..+++. .|+++++|+|. +.|++.|+++ .++++...|+.+ +.+..|+|++..
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 116 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence 467889999999999999999986 47899999999 9999999763 457778888876 554559999999
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhh--------------CCCccccCH
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQ--------------YPGGKERTK 153 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 153 (184)
++||++.++..++|++++++|||||.+++.|...+....... ............. ......++.
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 194 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH--LLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSI 194 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHH--HHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCH
T ss_pred eccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhh--HHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCH
Confidence 999998777789999999999999999999987655421100 0000000000000 000123588
Q ss_pred HHHHHHHHHcCCceeEEEeecCceEEEEEeC
Q 030025 154 HEFTTLATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 154 ~~~~~~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
+++.++|+++||+.++++.....+.-+.|.|
T Consensus 195 ~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 195 ETHKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp HHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 9999999999999999887666666666665
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=1.5e-25 Score=162.57 Aligned_cols=155 Identities=16% Similarity=0.310 Sum_probs=121.3
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~ 78 (184)
.....+++.+. ++++.+|||||||+|.++..++++. .+++|+|+ +.|++.|+++ +++.++++|+.+ +++
T Consensus 3 ~~~~~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~ 79 (234)
T d1xxla_ 3 HSLGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP 79 (234)
T ss_dssp HHHHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC
T ss_pred hHHHHHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhccccccccccccccccccccc
Confidence 34566888888 9999999999999999999999985 58999999 8999888764 679999999998 776
Q ss_pred CC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhH-hhhhCCCccccCHHH
Q 030025 79 NG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVL-VMTQYPGGKERTKHE 155 (184)
Q Consensus 79 ~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 155 (184)
+. |+|+|..++||+++++ .++++++++|||||++++.+...+... ....+++.. ........+.++..+
T Consensus 80 ~~~fD~v~~~~~l~~~~d~~--~~l~~~~r~LkpgG~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (234)
T d1xxla_ 80 DDSFDIITCRYAAHHFSDVR--KAVREVARVLKQDGRFLLVDHYAPEDP------VLDEFVNHLNRLRDPSHVRESSLSE 151 (234)
T ss_dssp TTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECBCSSH------HHHHHHHHHHHHHCTTCCCCCBHHH
T ss_pred ccccceeeeeceeecccCHH--HHHHHHHHeeCCCcEEEEEEcCCCCCH------HHHHHHHHHHhhCCCcccccCCHHH
Confidence 55 9999999999998765 789999999999999999887654321 111112111 111122345668999
Q ss_pred HHHHHHHcCCceeEEEe
Q 030025 156 FTTLATEAGFSGIRFVC 172 (184)
Q Consensus 156 ~~~~l~~aGf~~i~~~~ 172 (184)
|..+++++||...++..
T Consensus 152 ~~~~~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 152 WQAMFSANQLAYQDIQK 168 (234)
T ss_dssp HHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHCCCceeEEEE
Confidence 99999999998766543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.92 E-value=2.2e-25 Score=165.93 Aligned_cols=155 Identities=14% Similarity=0.231 Sum_probs=121.2
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~ 77 (184)
.+...+....+ +++..+|||||||+|.++..+++++ +++++++|+ +.|++.|+++ ++++++.+|+.+ ++
T Consensus 54 ~~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~ 131 (282)
T d2o57a1 54 WLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 131 (282)
T ss_dssp HHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccc
Confidence 34455555556 8899999999999999999999876 579999999 8899888764 579999999998 76
Q ss_pred CCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 78 PNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 78 ~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+.. |+|++..+++|+++++ .+|++++++|||||++++.++...+..... .......... .....+..+
T Consensus 132 ~~~sfD~V~~~~~l~h~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~s~~~ 201 (282)
T d2o57a1 132 EDNSYDFIWSQDAFLHSPDKL--KVFQECARVLKPRGVMAITDPMKEDGIDKS------SIQPILDRIK--LHDMGSLGL 201 (282)
T ss_dssp CTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEECTTCCGG------GGHHHHHHHT--CSSCCCHHH
T ss_pred cccccchhhccchhhhccCHH--HHHHHHHHhcCCCcEEEEEEeecCCCCchh------HHHHHHHHhc--cCCCCCHHH
Confidence 654 9999999999998765 789999999999999999998776542211 1111111111 123457899
Q ss_pred HHHHHHHcCCceeEEEee
Q 030025 156 FTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 156 ~~~~l~~aGf~~i~~~~~ 173 (184)
+.++++++||+.+.+...
T Consensus 202 ~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 202 YRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp HHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHcCCceEEEEEC
Confidence 999999999998887754
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.92 E-value=3.6e-25 Score=162.37 Aligned_cols=150 Identities=17% Similarity=0.270 Sum_probs=120.1
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCCCC-
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVPNG- 80 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~~~- 80 (184)
..+.+++.++ ..+..+|||+|||+|.++..++..+.. +++++|. +.|++.|+++ +++++.+.|+.+ +++..
T Consensus 81 ~s~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (254)
T d1xtpa_ 81 GSRNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNT 158 (254)
T ss_dssp HHHHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSC
T ss_pred HHHHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCc
Confidence 3567778887 778899999999999999998877543 8999999 8999988753 568999999987 55443
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+|++.+++||+++++..++|+++++.|+|||++++.++....... ..+. ..+...++.++|.++
T Consensus 159 fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~---------~~d~-----~d~~~~rs~~~~~~l 224 (254)
T d1xtpa_ 159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK-----EDSSLTRSDIHYKRL 224 (254)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET-----TTTEEEBCHHHHHHH
T ss_pred cceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc---------eecc-----cCCceeCCHHHHHHH
Confidence 9999999999999988889999999999999999999876543211 1110 112345689999999
Q ss_pred HHHcCCceeEEEee
Q 030025 160 ATEAGFSGIRFVCF 173 (184)
Q Consensus 160 l~~aGf~~i~~~~~ 173 (184)
|+++||++++....
T Consensus 225 ~~~aGf~ii~~~~q 238 (254)
T d1xtpa_ 225 FNESGVRVVKEAFQ 238 (254)
T ss_dssp HHHHTCCEEEEEEC
T ss_pred HHHcCCEEEEEEee
Confidence 99999999987764
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=7.8e-25 Score=159.82 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=122.9
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~ 76 (184)
+......+.+.+. +.+..+|||||||+|..+..++++++ ++++|+|+ +.|++.|++. ++++++.+|+.+.
T Consensus 18 ~~~~~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 18 TEEKYATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp CHHHHHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred CHHHHHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence 4556778899998 99999999999999999999998874 79999999 8999887663 5699999999984
Q ss_pred CCC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHH
Q 030025 77 VPN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKH 154 (184)
Q Consensus 77 ~~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
.+. . |+|++..+++|+++.+ .++++++++|||||++++.++......... ..... ..........+..
T Consensus 96 ~~~~~fD~v~~~~~~~~~~d~~--~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~ 165 (245)
T d1nkva_ 96 VANEKCDVAACVGATWIAGGFA--GAEELLAQSLKPGGIMLIGEPYWRQLPATE------EIAQA--CGVSSTSDFLTLP 165 (245)
T ss_dssp CCSSCEEEEEEESCGGGTSSSH--HHHHHHTTSEEEEEEEEEEEEEETTCCSSH------HHHHT--TTCSCGGGSCCHH
T ss_pred cccCceeEEEEEehhhccCCHH--HHHHHHHHHcCcCcEEEEEeccccCCCChH------HHHHH--hccCCCcccCCHH
Confidence 333 3 9999999999998765 789999999999999999988765432111 01110 0001123356889
Q ss_pred HHHHHHHHcCCceeEEEee
Q 030025 155 EFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 155 ~~~~~l~~aGf~~i~~~~~ 173 (184)
++.+.++++||+.+.....
T Consensus 166 ~~~~~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 166 GLVGAFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHHHHHTTTBCCCEEEEC
T ss_pred HHHHHHHHcCCEEEEEEeC
Confidence 9999999999998876544
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.3e-25 Score=160.47 Aligned_cols=139 Identities=16% Similarity=0.215 Sum_probs=113.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCC-C-CEEEechh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPN-G-DAILIKWI 88 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~-~-D~i~~~~~ 88 (184)
..+..+|||||||+|..+..+++..+ .+++++|+ +.|++.|+++ ++++|+++|+.+ +++. . |+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 55678999999999999999887764 48999999 9999988764 467999999988 5544 3 99999999
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCcee
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGI 168 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i 168 (184)
+||+++++..+++++++++|+|||.+++.++..++.. ..+. ......++.+++.++|+++||+++
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~----------~~~~-----~~~~~~~~~~~~~~l~~~aGf~ii 201 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV----------ILDD-----VDSSVCRDLDVVRRIICSAGLSLL 201 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE----------EEET-----TTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred cccchhhhhhhHHHHHHHhcCCcceEEEEEccccccc----------cccc-----CCceeeCCHHHHHHHHHHcCCEEE
Confidence 9999988878899999999999999999998765421 0000 112345689999999999999999
Q ss_pred EEEee
Q 030025 169 RFVCF 173 (184)
Q Consensus 169 ~~~~~ 173 (184)
+....
T Consensus 202 ~~~~q 206 (222)
T d2ex4a1 202 AEERQ 206 (222)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 88764
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.90 E-value=2.5e-23 Score=154.21 Aligned_cols=167 Identities=16% Similarity=0.239 Sum_probs=125.4
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~ 76 (184)
+..-.+.+++.+. +++..+|||||||+|.++..+++++ +++++++|+ +.+++.|+++ .++.+...|..+.
T Consensus 37 Q~~k~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~ 114 (280)
T d2fk8a1 37 QYAKVDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF 114 (280)
T ss_dssp HHHHHHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC
T ss_pred HHHHHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh
Confidence 3455788889988 9999999999999999999988887 479999999 8888777653 4567777776543
Q ss_pred CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCC---C--ccccchhhhhhHhhhhCCCcccc
Q 030025 77 VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPEN---G--THSKINSLADVLVMTQYPGGKER 151 (184)
Q Consensus 77 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
....|.|++..+++|++++....+|++++++|||||++++.+......... . .........+.......+++...
T Consensus 115 ~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lP 194 (280)
T d2fk8a1 115 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP 194 (280)
T ss_dssp CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCccc
Confidence 233499999999999998777789999999999999999987655432100 0 00000111233333446677788
Q ss_pred CHHHHHHHHHHcCCceeEEEee
Q 030025 152 TKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 152 ~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
+..++.+.++++||++.++...
T Consensus 195 S~~~l~~~~e~aGf~v~~~~~~ 216 (280)
T d2fk8a1 195 STEMMVEHGEKAGFTVPEPLSL 216 (280)
T ss_dssp CHHHHHHHHHHTTCBCCCCEEC
T ss_pred chHhhhhhHHhhccccceeeec
Confidence 9999999999999999877654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.90 E-value=9e-23 Score=151.29 Aligned_cols=168 Identities=15% Similarity=0.185 Sum_probs=129.3
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~ 76 (184)
+....+.+++.+. +++..+|||||||+|..+..+++.+ +++++|+++ +..++.++++ +++.+...|+.+.
T Consensus 47 Q~~k~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~ 124 (285)
T d1kpga_ 47 QIAKIDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF 124 (285)
T ss_dssp HHHHHHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC
T ss_pred HHHHHHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc
Confidence 4556788999998 9999999999999999999999998 589999999 7777766542 6789999998753
Q ss_pred CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCC-----CCCccccchhhhhhHhhhhCCCcccc
Q 030025 77 VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELP-----ENGTHSKINSLADVLVMTQYPGGKER 151 (184)
Q Consensus 77 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
-...|.|++..+++|+..+....+|+++.++|||||++++.+.....+. ..+.........+.......+++...
T Consensus 125 ~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lP 204 (285)
T d1kpga_ 125 DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP 204 (285)
T ss_dssp CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC
T ss_pred cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCC
Confidence 2334999999999999877666899999999999999999887643321 00111111112233333345677888
Q ss_pred CHHHHHHHHHHcCCceeEEEeec
Q 030025 152 TKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 152 ~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
+..++.++++++||+++++....
T Consensus 205 sl~~~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 205 SIPMVQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp CHHHHHHHHHTTTCEEEEEEECH
T ss_pred ChhhHHHHHHHhchhhcccccch
Confidence 99999999999999999887654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=2.2e-23 Score=148.38 Aligned_cols=138 Identities=17% Similarity=0.153 Sum_probs=103.9
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCC--CEEEechhhhcCChH
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNG--DAILIKWILHDWSDE 95 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~--D~i~~~~~l~~~~~~ 95 (184)
.+.++|||||||+|.++..+. +++|+|. +.|++.++++ ++.++++|+.+ ++++. |+|++..++||++++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~ 107 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP 107 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH
T ss_pred CCCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-cccccccccccccccccccccccccccccccccc
Confidence 346789999999999988763 3489999 9999998765 69999999988 66544 999999999999876
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
+ .++++++++|+|||++++.++...+... . .............+...++.+++.++|+++||+.+++..
T Consensus 108 ~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 108 E--RALKEAYRILKKGGYLIVGIVDRESFLG----R--EYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp H--HHHHHHHHHEEEEEEEEEEEECSSSHHH----H--HHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred c--cchhhhhhcCCCCceEEEEecCCcchhH----H--hhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 5 7899999999999999998875533100 0 000000000001234467999999999999999988765
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.89 E-value=2.1e-22 Score=149.68 Aligned_cols=168 Identities=15% Similarity=0.231 Sum_probs=126.5
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~ 76 (184)
+....+.+++.+. +++..+|||||||+|.++..++++++ ++++|+++ +..++.++++ .++.+...|....
T Consensus 46 q~~k~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~ 123 (291)
T d1kpia_ 46 QYAKRKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF 123 (291)
T ss_dssp HHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred HHHHHHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc
Confidence 4556788999998 99999999999999999999999884 79999999 7776666543 4677777776543
Q ss_pred CCCCCEEEechhhhcCCh-------HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCC-----CccccchhhhhhHhhhh
Q 030025 77 VPNGDAILIKWILHDWSD-------EHCLKLLKNCHKSIPEGGKVIVVESVLPELPEN-----GTHSKINSLADVLVMTQ 144 (184)
Q Consensus 77 ~~~~D~i~~~~~l~~~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 144 (184)
-+..|.|++..+++|+++ +....+|+++.++|||||++++.+...++.... ..........++.....
T Consensus 124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyi 203 (291)
T d1kpia_ 124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEI 203 (291)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHh
Confidence 233499999999999976 345689999999999999999998876542100 00000111222333334
Q ss_pred CCCccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 145 YPGGKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
.+++...+..++...++++||++.+.....
T Consensus 204 Fpgg~lps~~~~~~~~e~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 204 FPGGRLPRISQVDYYSSNAGWKVERYHRIG 233 (291)
T ss_dssp CTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred cCCCCCCCHHHHHhhhcccccccceeeecc
Confidence 567788899999999999999998887654
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.88 E-value=7e-23 Score=152.20 Aligned_cols=166 Identities=16% Similarity=0.197 Sum_probs=116.3
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC-CeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH-IKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~ 77 (184)
....+.+++.+..+.++.+|||||||+|.++..+++..+. .+++++|+ +.+++.|+++ .+++|+..|+.+ ++
T Consensus 12 ~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~ 91 (281)
T d2gh1a1 12 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL 91 (281)
T ss_dssp HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC
T ss_pred HHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccc
Confidence 3445566665544678899999999999999999998764 78999999 8999988764 368999999988 65
Q ss_pred CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCC-----CCCccc---cchhhhhhHhh-hhCCC
Q 030025 78 PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELP-----ENGTHS---KINSLADVLVM-TQYPG 147 (184)
Q Consensus 78 ~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~-----~~~~~~---~~~~~~~~~~~-~~~~~ 147 (184)
++. |+|++.+++||+++++ .+++++++.|||||++++.++...... ...... ........... ....+
T Consensus 92 ~~~fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (281)
T d2gh1a1 92 NDKYDIAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNG 169 (281)
T ss_dssp SSCEEEEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEehhhhcCCCHH--HHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcC
Confidence 555 9999999999998875 789999999999999999986532110 000000 00011111111 00111
Q ss_pred ccccCHHHHHHHHHHcCCceeEEEee
Q 030025 148 GKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 148 ~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
.......++..+++++||+.+++...
T Consensus 170 ~~~~i~~~l~~~l~eaGf~~i~~~~~ 195 (281)
T d2gh1a1 170 KDGNIGMKIPIYLSELGVKNIECRVS 195 (281)
T ss_dssp CCTTGGGTHHHHHHHTTCEEEEEEEC
T ss_pred CCCCHHHHHHHHHHHcCCeEEEEEEe
Confidence 11122356788999999999987644
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.88 E-value=2.1e-22 Score=147.04 Aligned_cols=109 Identities=15% Similarity=0.283 Sum_probs=93.2
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCCC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~~ 80 (184)
....+++.+. .++.++|||||||+|..+..++++. ..++|+|+ +.|++.|+++ .++++.++|+.+ ++++.
T Consensus 29 ~~~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~ 105 (251)
T d1wzna1 29 FVEEIFKEDA-KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNE 105 (251)
T ss_dssp HHHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSC
T ss_pred HHHHHHHHhc-CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhcccccc
Confidence 4566777777 7788999999999999999999874 58999999 8999998874 479999999998 66655
Q ss_pred -CEEEec-hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 81 -DAILIK-WILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 81 -D~i~~~-~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
|+|+|. .+++|+..++...+|++++++|||||++++..+
T Consensus 106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 999885 688888877788999999999999999998544
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.87 E-value=1.7e-22 Score=145.58 Aligned_cols=157 Identities=16% Similarity=0.193 Sum_probs=111.3
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--CCceEEEcccCc-cCCCC-CEEE
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--PGVKHVGGDMFQ-SVPNG-DAIL 84 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--~~i~~~~~d~~~-~~~~~-D~i~ 84 (184)
+-+++++....+.++|||||||+|.++..++++. .+++++|+ +.+++.|+++ .++.++.+|+.+ +.+.. |+|+
T Consensus 9 ~~~~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 86 (225)
T d2p7ia1 9 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIV 86 (225)
T ss_dssp HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEE
T ss_pred HHHHHHhhhhCCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhccccccccccccccccccccccccccc
Confidence 3344444335567899999999999999998875 57999999 8899988764 579999999887 44444 9999
Q ss_pred echhhhcCChHHHHHHHHHHH-hhCCCCcEEEEEeeecCCCCCC----CccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 85 IKWILHDWSDEHCLKLLKNCH-KSIPEGGKVIVVESVLPELPEN----GTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~-~~L~pgG~l~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
+..++||++++. .++++++ ++|+|||++++..+........ ................ ....+.++.+++.++
T Consensus 87 ~~~vleh~~d~~--~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~l~~~ 163 (225)
T d2p7ia1 87 LTHVLEHIDDPV--ALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFA-HGHRCTYALDTLERD 163 (225)
T ss_dssp EESCGGGCSSHH--HHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHH-TTCCCCCCHHHHHHH
T ss_pred ccceeEecCCHH--HHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccc-eeeeeccCHHHHHHH
Confidence 999999998775 7899998 7899999999987653321000 0000000000000011 123456799999999
Q ss_pred HHHcCCceeEEE
Q 030025 160 ATEAGFSGIRFV 171 (184)
Q Consensus 160 l~~aGf~~i~~~ 171 (184)
++++||++++..
T Consensus 164 l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 164 ASRAGLQVTYRS 175 (225)
T ss_dssp HHHTTCEEEEEE
T ss_pred HHHCCCEEEEEE
Confidence 999999987754
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.85 E-value=8.5e-21 Score=136.60 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=111.0
Q ss_pred HHhHHHHHH---HhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCC----CCCCceEEEcccCcc-
Q 030025 6 TLVLQKILE---AYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSP----EYPGVKHVGGDMFQS- 76 (184)
Q Consensus 6 ~~~~~~l~~---~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~----~~~~i~~~~~d~~~~- 76 (184)
+.++..++. .++ +++..+|||+|||+|.++..+++..|+.+++++|+ +.|++.++ +++++.++..|...+
T Consensus 57 sklaA~i~~gl~~l~-ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~ 135 (230)
T d1g8sa_ 57 SKLAAAIIKGLKVMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQ 135 (230)
T ss_dssp CHHHHHHHTTCCCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGG
T ss_pred cHHHHHHHhhHHhCC-CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCc
Confidence 344555554 455 88999999999999999999999999999999999 87776554 458899999998873
Q ss_pred -CCC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCH
Q 030025 77 -VPN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTK 153 (184)
Q Consensus 77 -~~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
... . |++++.+.+++..+. ..+++++++.|||||.+++.+.........+ .....
T Consensus 136 ~~~~~~~~v~~i~~~~~~~~~~--~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~--------------------~~~~~ 193 (230)
T d1g8sa_ 136 EYANIVEKVDVIYEDVAQPNQA--EILIKNAKWFLKKGGYGMIAIKARSIDVTKD--------------------PKEIF 193 (230)
T ss_dssp GGTTTCCCEEEEEECCCSTTHH--HHHHHHHHHHEEEEEEEEEEEEGGGTCSSSC--------------------HHHHH
T ss_pred ccccccceeEEeeccccchHHH--HHHHHHHHHhcccCceEEEEeeccccCCCCC--------------------HHHHH
Confidence 222 2 787887888877655 4789999999999999999876553321110 11134
Q ss_pred HHHHHHHHHcCCceeEEEeec
Q 030025 154 HEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 154 ~~~~~~l~~aGf~~i~~~~~~ 174 (184)
+++.+.|+++||+.++...+.
T Consensus 194 ~e~~~~L~~aGF~ive~idL~ 214 (230)
T d1g8sa_ 194 KEQKEILEAGGFKIVDEVDIE 214 (230)
T ss_dssp HHHHHHHHHHTEEEEEEEECT
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 678899999999999988764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.85 E-value=5.7e-21 Score=134.86 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=90.7
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCCC-C
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPNG-D 81 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~~-D 81 (184)
.++.... ..++++|||||||+|..+..++++ ..+++++|+ +.|++.+++. +++.+...|+.+ .+++. |
T Consensus 21 ~~~~~~~-~~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD 97 (198)
T d2i6ga1 21 DVLAAAK-VVAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYD 97 (198)
T ss_dssp HHHHHHT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEE
T ss_pred HHHHHcc-cCCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccccccc
Confidence 3555555 556679999999999999999998 468999999 8889877543 678999999987 44444 9
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+|++..++||+++++...+++++.++|+|||++++.....
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 98 FILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp EEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 9999999999998888899999999999999999977653
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.84 E-value=1.9e-21 Score=139.52 Aligned_cols=107 Identities=16% Similarity=0.282 Sum_probs=90.6
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCCC--
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPNG-- 80 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~~-- 80 (184)
..++..+ +++..+|||||||+|.++..+++. +.+++|+|+ +.|++.|+++ ..+.++..|+.+ ++++.
T Consensus 28 ~~~~~~~--l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~f 103 (226)
T d1ve3a1 28 EPLLMKY--MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTF 103 (226)
T ss_dssp HHHHHHS--CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCE
T ss_pred HHHHHHh--cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCc
Confidence 3344442 467789999999999999999986 568999999 8999888763 568899999988 66644
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
|+|++..+++|+++++..++|+++.++|||||++++..+.
T Consensus 104 D~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 104 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9999999999999877789999999999999999997764
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.83 E-value=2.4e-20 Score=135.74 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=81.1
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCCC-CEEEec-hhhh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPNG-DAILIK-WILH 90 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~~-D~i~~~-~~l~ 90 (184)
.++++|||||||+|.++..++++. .+++|+|. +.|++.|+++ .+++++++|+.+ +.+.. |+|+|. ++++
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence 456899999999999999999985 48999999 9999988764 579999999988 55555 999875 6888
Q ss_pred cCC-hHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 91 DWS-DEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 91 ~~~-~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
|+. .++...+|+++++.|+|||.+++.
T Consensus 114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 875 556678999999999999999974
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.82 E-value=5.4e-20 Score=129.23 Aligned_cols=111 Identities=9% Similarity=0.103 Sum_probs=93.1
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------------------CCceEE
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------------------PGVKHV 69 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------------------~~i~~~ 69 (184)
.+.....+. ++++.+|||+|||+|..+..|+++ +.+++|+|+ +.|++.|+++ ..+.+.
T Consensus 9 ~~~~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T d1pjza_ 9 LQQYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW 85 (201)
T ss_dssp HHHHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred HHHHHHHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence 344677777 899999999999999999999997 679999999 8999988763 346788
Q ss_pred EcccCccC--C-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 70 GGDMFQSV--P-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 70 ~~d~~~~~--~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
.+|+.+.. + .. |+|++..++||+++++...+++++++.|||||++++......
T Consensus 86 ~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~ 142 (201)
T d1pjza_ 86 CGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD 142 (201)
T ss_dssp EECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred cccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 88887722 1 23 999999999999988888999999999999999988776543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.82 E-value=2.7e-20 Score=136.06 Aligned_cols=107 Identities=16% Similarity=0.131 Sum_probs=85.9
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cC--C
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SV--P 78 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~--~ 78 (184)
..|++.+ .++..+|||||||+|..+..+++.. ..+++|+|+ +.|++.|+++ .++.+.++|+.. +. .
T Consensus 15 ~~lI~~~--~~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~ 91 (252)
T d1ri5a_ 15 ACLIRLY--TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLG 91 (252)
T ss_dssp HHHHHHH--CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCS
T ss_pred HHHHHHh--CCCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccccc
Confidence 4455555 4778999999999999999888864 358999999 9999888642 468999999976 33 2
Q ss_pred CC-CEEEechhhhcCC--hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 79 NG-DAILIKWILHDWS--DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 79 ~~-D~i~~~~~l~~~~--~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.. |+|+|.+++||+. .++...+|++++++|||||++++..+
T Consensus 92 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 92 KEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp SCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 33 9999999999963 34556899999999999999998654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=4.6e-20 Score=133.79 Aligned_cols=98 Identities=15% Similarity=0.215 Sum_probs=83.5
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCC--CEEEec-hhhhcCC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNG--DAILIK-WILHDWS 93 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~--D~i~~~-~~l~~~~ 93 (184)
.+++.+|||+|||+|.++..+++. ..+++|+|. +.|++.|+++....++.+|+.+ +++.. |+|++. .++||++
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh
Confidence 356789999999999999999886 569999999 9999999887555678899888 66644 999974 6899998
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+++ .+|+++.++|||||.+++..+.
T Consensus 118 d~~--~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 118 NKD--KAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp CHH--HHHHHHHHHEEEEEEEEEEEEB
T ss_pred hHH--HHHHHHHhhcCcCcEEEEEECC
Confidence 875 6899999999999999997653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=6e-19 Score=127.04 Aligned_cols=142 Identities=8% Similarity=-0.120 Sum_probs=107.6
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---------------------
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------------------- 63 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------------------- 63 (184)
..+.+.+.+.+. .++..+|||+|||+|..+..|+++ +.+++|+|+ +.+++.+++.
T Consensus 31 ~~l~~~~~~~l~-~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~ 107 (229)
T d2bzga1 31 QLLKKHLDTFLK-GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS 107 (229)
T ss_dssp HHHHHHHHHHHT-TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred HHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence 344455555566 788899999999999999999997 579999999 8888765321
Q ss_pred --CCceEEEcccCc-c-CCC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhh
Q 030025 64 --PGVKHVGGDMFQ-S-VPN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLA 137 (184)
Q Consensus 64 --~~i~~~~~d~~~-~-~~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~ 137 (184)
.++++.++|+.+ + ... . |+|+...++||+++++....++++.++|||||++++.....+.....
T Consensus 108 ~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~---------- 177 (229)
T d2bzga1 108 SSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP---------- 177 (229)
T ss_dssp TTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCC----------
T ss_pred cCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCC----------
Confidence 468899999987 2 222 3 99999999999998888899999999999999999887765432110
Q ss_pred hhHhhhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 138 DVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
......+.+++.++|+. +|.+..
T Consensus 178 --------gpp~~~~~~el~~lf~~-~~~i~~ 200 (229)
T d2bzga1 178 --------GPPFYVPHAEIERLFGK-ICNIRC 200 (229)
T ss_dssp --------CSSCCCCHHHHHHHHTT-TEEEEE
T ss_pred --------CCCCCCCHHHHHHHhcC-CCEEEE
Confidence 01123478899999965 666543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.78 E-value=7.6e-19 Score=124.62 Aligned_cols=153 Identities=12% Similarity=0.049 Sum_probs=104.4
Q ss_pred HhHHHHHH--HhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC----CCCceEEEcccCc-cCC
Q 030025 7 LVLQKILE--AYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE----YPGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 7 ~~~~~l~~--~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~ 78 (184)
.++..++. .++ ++++.+|||+|||+|..+..+++..|+.+++++|+ +.|++.+++ ..++.++..|... +.+
T Consensus 41 klaa~i~~g~~l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~ 119 (209)
T d1nt2a_ 41 KLAAMILKGHRLK-LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKY 119 (209)
T ss_dssp HHHHHHHTSCCCC-CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGT
T ss_pred HHHHHHhccccCC-CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCcccc
Confidence 34444544 455 88999999999999999999999999889999999 889887755 3789999999887 332
Q ss_pred C-C--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 79 N-G--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 79 ~-~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
. . ++.++.+.++|..+. ..+++++++.|||||++++.+.........+. ....++
T Consensus 120 ~~~~~~vd~v~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~--------------------~~~~~~ 177 (209)
T d1nt2a_ 120 SGIVEKVDLIYQDIAQKNQI--EILKANAEFFLKEKGEVVIMVKARSIDSTAEP--------------------EEVFKS 177 (209)
T ss_dssp TTTCCCEEEEEECCCSTTHH--HHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCH--------------------HHHHHH
T ss_pred ccccceEEEEEecccChhhH--HHHHHHHHHHhccCCeEEEEEEccccCCCCCH--------------------HHHHHH
Confidence 2 1 333344455554443 47899999999999999998754322111000 001122
Q ss_pred HHHHHHHcCCceeEEEeec---CceEEEEEe
Q 030025 156 FTTLATEAGFSGIRFVCFF---HNLWVMEFY 183 (184)
Q Consensus 156 ~~~~l~~aGf~~i~~~~~~---~~~~~~~~~ 183 (184)
..+.+ ++||+.++...+. ..+.++.++
T Consensus 178 ~~~~l-~~gf~i~E~i~L~P~~~~H~~v~~~ 207 (209)
T d1nt2a_ 178 VLKEM-EGDFKIVKHGSLMPYHRDHIFIHAY 207 (209)
T ss_dssp HHHHH-HTTSEEEEEEECTTTCTTEEEEEEE
T ss_pred HHHHH-HcCCEEEEEEccCCCccCcEEEEEE
Confidence 22333 4799999988764 355555553
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=2e-19 Score=132.46 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=82.3
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc-cCCCC--CEEEechhhhcCCh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SVPNG--DAILIKWILHDWSD 94 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~~~~--D~i~~~~~l~~~~~ 94 (184)
.+..+|||||||+|.++..+++..|+.+++|+|+ +.|++.|++. +++.+.++|+.+ ++++. |+|++.++++|
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 5678999999999999999999999999999999 8999988764 899999999998 77655 99999888776
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 95 EHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 95 ~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
++++.|+|||||.+++..+..
T Consensus 160 ------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 160 ------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp ------HHHHHHHEEEEEEEEEEEECT
T ss_pred ------HHHHHHHhCCCcEEEEEeeCC
Confidence 567899999999999988643
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=5.8e-19 Score=130.66 Aligned_cols=150 Identities=17% Similarity=0.084 Sum_probs=97.8
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhh----CCC--CeEEEeec-hhHhhhCCCC-------CCceE--EEcccC
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSK----YPH--IKGINFDL-PHVIQHSPEY-------PGVKH--VGGDMF 74 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~----~~~--~~~~~~D~-~~~~~~a~~~-------~~i~~--~~~d~~ 74 (184)
.++..+...++..+|||||||+|.++..+++. ++. ++++++|. +.|++.++++ +++.+ ...++.
T Consensus 30 ~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 109 (280)
T d1jqea_ 30 GIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSS 109 (280)
T ss_dssp HHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHH
T ss_pred HHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 33344432344458999999999998877654 444 46799999 8888877542 33333 333332
Q ss_pred c-------cCC-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhh-h
Q 030025 75 Q-------SVP-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMT-Q 144 (184)
Q Consensus 75 ~-------~~~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 144 (184)
+ +.+ +. |+|++.+++||+++++ .++++++++|+|||.+++........ +........... .
T Consensus 110 ~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~--~~l~~l~~~LkpgG~l~i~~~~~~~~-------~~~l~~~~~~~~~~ 180 (280)
T d1jqea_ 110 EYQSRMLEKKELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLIIVVSGSSG-------WDKLWKKYGSRFPQ 180 (280)
T ss_dssp HHHHHHTTSSSCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEECTTSH-------HHHHHHHHGGGSCC
T ss_pred hhcchhcccCCCCceeEEEEccceecCCCHH--HHHHHHHhhCCCCCEEEEEEecCcch-------HHHHHHHHHHhcCC
Confidence 1 122 23 9999999999998765 78999999999999999977643221 111111111111 1
Q ss_pred CCCccccCHHHHHHHHHHcCCceeE
Q 030025 145 YPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
......++..++.++|++.||+...
T Consensus 181 ~~~~~~~~~~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 181 DDLCQYITSDDLTQMLDNLGLKYEC 205 (280)
T ss_dssp CTTSCCCCHHHHHHHHHHHTCCEEE
T ss_pred CcccccCCHHHHHHHHHHCCCceEE
Confidence 1123457899999999999998554
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.76 E-value=2.5e-18 Score=125.14 Aligned_cols=123 Identities=14% Similarity=0.166 Sum_probs=96.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCC--CCCEEEechhhh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVP--NGDAILIKWILH 90 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~--~~D~i~~~~~l~ 90 (184)
..++.+|||+|||+|.++..+++. ..+++++|+ +.+++.|+++ -++.+..+|..+..+ ..|+|+++...+
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccc
Confidence 357889999999999999887775 468999999 9999998864 356788888876433 339999865544
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEE
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRF 170 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~ 170 (184)
. ...+++++.+.|||||++++++.... ..+++.+.++++||+.++.
T Consensus 196 ~-----l~~l~~~~~~~LkpGG~lilSgil~~-----------------------------~~~~v~~~~~~~Gf~~~~~ 241 (254)
T d2nxca1 196 L-----HAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp H-----HHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEE
T ss_pred c-----HHHHHHHHHHhcCCCcEEEEEecchh-----------------------------hHHHHHHHHHHCCCEEEEE
Confidence 2 34789999999999999999765321 2567888999999999888
Q ss_pred EeecCce
Q 030025 171 VCFFHNL 177 (184)
Q Consensus 171 ~~~~~~~ 177 (184)
.......
T Consensus 242 ~~~~~Wv 248 (254)
T d2nxca1 242 AAEGEWV 248 (254)
T ss_dssp EEETTEE
T ss_pred EEECCEE
Confidence 7765543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.2e-19 Score=131.16 Aligned_cols=139 Identities=12% Similarity=-0.007 Sum_probs=96.6
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCc-----------------------------
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGV----------------------------- 66 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i----------------------------- 66 (184)
.+..+|||||||+|.++..++... ..+++++|+ +.|++.|+++ ...
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 456799999999999887676653 347999999 8999888653 110
Q ss_pred ----eEEEcccCc-----cCCCC--CEEEechhhhcCC--hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccc
Q 030025 67 ----KHVGGDMFQ-----SVPNG--DAILIKWILHDWS--DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKI 133 (184)
Q Consensus 67 ----~~~~~d~~~-----~~~~~--D~i~~~~~l~~~~--~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~ 133 (184)
.....+... +.+.. |+|++.+++||++ .++...+++++.++|||||++++.++.......
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~------- 201 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM------- 201 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE-------
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccce-------
Confidence 111111111 23333 9999999999985 245568999999999999999998875433100
Q ss_pred hhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEee
Q 030025 134 NSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
.... ......++.+++.++|++|||+++++...
T Consensus 202 -~~~~------~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 202 -VGKR------EFSCVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp -ETTE------EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -eccc------cccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 0000 01123468999999999999998887544
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.75 E-value=6.9e-18 Score=118.48 Aligned_cols=106 Identities=15% Similarity=0.248 Sum_probs=86.6
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCccCC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~~~~ 78 (184)
..+.++++++ ..+..+|||+|||+|.++..+++..+ +++++|+ +.+++.++++ .++++..+|..+..+
T Consensus 40 ~t~lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~ 116 (194)
T d1dusa_ 40 GTKILVENVV-VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK 116 (194)
T ss_dssp HHHHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT
T ss_pred HHHHHHHhCC-cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc
Confidence 3566788888 88899999999999999999998765 6788998 8888888652 458999999987554
Q ss_pred CC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 79 NG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 79 ~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+. |+|++..++|+. .+....+++++.+.|+|||.+++.
T Consensus 117 ~~~fD~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~ 156 (194)
T d1dusa_ 117 DRKYNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp TSCEEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCceEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEE
Confidence 43 999998887764 334457999999999999999874
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=6.3e-19 Score=126.94 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=100.4
Q ss_pred cccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-
Q 030025 3 NHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ- 75 (184)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~- 75 (184)
++...+...+.+.+. .+.++|||||||+|..+..+++..+ .+++++|+ +.+++.|+++ .++.++..|+..
T Consensus 37 ~w~~~~~~~la~~~~--~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 113 (229)
T d1zx0a1 37 RWETPYMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV 113 (229)
T ss_dssp GGGHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHhhc--cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhccccccccccccccc
Confidence 344555566666654 5678999999999999999988654 58999999 8999988764 456777776653
Q ss_pred --cCCCC--CEEE-----echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCC
Q 030025 76 --SVPNG--DAIL-----IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYP 146 (184)
Q Consensus 76 --~~~~~--D~i~-----~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
+++.. |.|+ +...++|+.+.+ .++++++|+|||||+|++.+....... ......
T Consensus 114 ~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~--~~~~~~~r~LkpGG~~~~~~~~~~~~~---------------~~~~~~ 176 (229)
T d1zx0a1 114 APTLPDGHFDGILYDTYPLSEETWHTHQFN--FIKNHAFRLLKPGGVLTYCNLTSWGEL---------------MKSKYS 176 (229)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGGTTTHHHH--HHHHTHHHHEEEEEEEEECCHHHHHHH---------------TTTTCS
T ss_pred ccccccccccceeecccccccccccccCHH--HHHHHHHHHcCCCcEEEEEecCCcchh---------------hhhhhh
Confidence 34433 7665 567778776554 789999999999999987443221100 000000
Q ss_pred CccccCHHHHHHHHHHcCCceeEEE
Q 030025 147 GGKERTKHEFTTLATEAGFSGIRFV 171 (184)
Q Consensus 147 ~~~~~~~~~~~~~l~~aGf~~i~~~ 171 (184)
.......+.+...+.++||+..++.
T Consensus 177 ~~~~~~~~~~~~~l~~agF~~~~i~ 201 (229)
T d1zx0a1 177 DITIMFEETQVPALLEAGFRRENIR 201 (229)
T ss_dssp CHHHHHHHHTHHHHHHTTCCGGGEE
T ss_pred hcchhhhhHHHHHHHHCCCeeEEEE
Confidence 1111234566777889999876554
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.71 E-value=1.1e-17 Score=116.65 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=88.8
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ- 75 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~- 75 (184)
...+...++..+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ ++++++++|+.+
T Consensus 18 ~~eir~~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~ 94 (186)
T d1l3ia_ 18 AMEVRCLIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA 94 (186)
T ss_dssp CHHHHHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH
T ss_pred hHHHHHHHHHhcC-CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc
Confidence 4567788899998 9999999999999999999998864 58999999 9999998774 589999999887
Q ss_pred cCC--CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 76 SVP--NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 76 ~~~--~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
..+ ..|.|++....+++ ..+++.+.+.|||||++++..
T Consensus 95 ~~~~~~~D~v~~~~~~~~~-----~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 95 LCKIPDIDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp HTTSCCEEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccCCcCEEEEeCccccc-----hHHHHHHHHHhCcCCEEEEEe
Confidence 333 23999998776653 367999999999999998854
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.70 E-value=6.6e-18 Score=122.40 Aligned_cols=126 Identities=12% Similarity=0.111 Sum_probs=94.7
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCCC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPNG 80 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~~ 80 (184)
..|+..+. +.+..+|||+|||+|.++..+++. .|..+++++|. +++++.|+++ .++++..+|+.+.+++.
T Consensus 75 ~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~ 153 (250)
T d1yb2a1 75 SYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 153 (250)
T ss_dssp ------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccc
Confidence 45667777 899999999999999999999987 67889999999 8899888753 57999999998854443
Q ss_pred --CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 81 --DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 81 --D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
|.|++ +++++. .+++++.++|||||++++..+..+ -.....+
T Consensus 154 ~fD~V~l-----d~p~p~--~~l~~~~~~LKpGG~lv~~~P~i~-----------------------------Qv~~~~~ 197 (250)
T d1yb2a1 154 MYDAVIA-----DIPDPW--NHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVL 197 (250)
T ss_dssp CEEEEEE-----CCSCGG--GSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHH
T ss_pred eeeeeee-----cCCchH--HHHHHHHHhcCCCceEEEEeCCcC-----------------------------hHHHHHH
Confidence 99886 345443 689999999999999998543211 1244456
Q ss_pred HHHHcCCceeEEEe
Q 030025 159 LATEAGFSGIRFVC 172 (184)
Q Consensus 159 ~l~~aGf~~i~~~~ 172 (184)
.++++||..+++..
T Consensus 198 ~l~~~gf~~i~~~E 211 (250)
T d1yb2a1 198 SLSASGMHHLETVE 211 (250)
T ss_dssp HSGGGTEEEEEEEE
T ss_pred HHHHCCCceeEEEE
Confidence 67888998776654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=2.3e-17 Score=120.28 Aligned_cols=104 Identities=15% Similarity=0.258 Sum_probs=89.0
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC---------CCceEEEcccCc-c
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY---------PGVKHVGGDMFQ-S 76 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~---------~~i~~~~~d~~~-~ 76 (184)
+..|+..+. +.+..+|||+|||+|..+..|++. .|..+++++|. +++++.|+++ .++.++.+|+.+ +
T Consensus 85 ~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 85 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 566788888 999999999999999999999998 68899999999 9999988763 689999999987 5
Q ss_pred CCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 77 VPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 77 ~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+++. |.|++ +++++. .++.+++++|||||++++..+.
T Consensus 164 ~~~~~fDaV~l-----dlp~P~--~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp CCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEESS
T ss_pred ccCCCcceEEE-----ecCCHH--HHHHHHHhccCCCCEEEEEeCc
Confidence 6554 99876 566664 7899999999999999986644
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.5e-17 Score=121.96 Aligned_cols=150 Identities=14% Similarity=0.104 Sum_probs=101.1
Q ss_pred hHHHHHHHhc-CCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----C-C---------------
Q 030025 8 VLQKILEAYK-GFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----P-G--------------- 65 (184)
Q Consensus 8 ~~~~l~~~~~-~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~-~--------------- 65 (184)
..+.+-+.++ ...+..+|||||||+|.++...+.... .+++++|. +.|++.+++. + .
T Consensus 40 ~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 118 (263)
T d2g72a1 40 KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 118 (263)
T ss_dssp HHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhcc
Confidence 3444545444 133568999999999987754444432 38999999 8999887642 0 0
Q ss_pred ----------------ceEEEcccCc--c-----CCC-C-CEEEechhhhcCC--hHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 66 ----------------VKHVGGDMFQ--S-----VPN-G-DAILIKWILHDWS--DEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 66 ----------------i~~~~~d~~~--~-----~~~-~-D~i~~~~~l~~~~--~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
......|+.+ + .+. . |+|++.+++||++ .++...++++++++|||||.|++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~ 198 (263)
T d2g72a1 119 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 198 (263)
T ss_dssp SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 1234455543 1 112 2 9999999999986 2356789999999999999999988
Q ss_pred eecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 119 SVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
....... ..... ......++.+++.++|+++||+++++..
T Consensus 199 ~~~~~~~----------~~~~~----~~~~~~~t~e~v~~~l~~aGf~v~~~~~ 238 (263)
T d2g72a1 199 ALEESWY----------LAGEA----RLTVVPVSEEEVREALVRSGYKVRDLRT 238 (263)
T ss_dssp EESCCEE----------EETTE----EEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCccc----------ccCCc----ccccCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 7653311 00000 0012235999999999999999887653
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.70 E-value=1.8e-16 Score=113.36 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=104.2
Q ss_pred HHhHHHHHH---HhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCC----CCCceEEEcccCcc
Q 030025 6 TLVLQKILE---AYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPE----YPGVKHVGGDMFQS 76 (184)
Q Consensus 6 ~~~~~~l~~---~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~ 76 (184)
+.++..|+. .++ +++..+|||+|||+|.++..+++.. |..+++++|. +.|++.+++ ..++..+..|...+
T Consensus 56 SKlaa~i~~~l~~l~-i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~ 134 (227)
T d1g8aa_ 56 SKLGAAIMNGLKNFP-IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKP 134 (227)
T ss_dssp CHHHHHHHTTCCCCC-CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCG
T ss_pred cHHHHHHHccccccc-cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCc
Confidence 344555554 445 7899999999999999999999984 7889999999 888876644 47788888888762
Q ss_pred --CCC--C--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccc
Q 030025 77 --VPN--G--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKE 150 (184)
Q Consensus 77 --~~~--~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
.+. . |+|++ .+++.++ ...+++++++.|||||++++............. .
T Consensus 135 ~~~~~~~~~vD~i~~--d~~~~~~--~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~--------------------~ 190 (227)
T d1g8aa_ 135 EEYRALVPKVDVIFE--DVAQPTQ--AKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEP--------------------E 190 (227)
T ss_dssp GGGTTTCCCEEEEEE--CCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCH--------------------H
T ss_pred ccccccccceEEEEE--Eccccch--HHHHHHHHHHhcccCCeEEEEEECCccCCCCCH--------------------H
Confidence 221 2 55544 4444443 347899999999999999997644322111000 0
Q ss_pred cCHHHHHHHHHHcCCceeEEEeecC---ceEEEEEeC
Q 030025 151 RTKHEFTTLATEAGFSGIRFVCFFH---NLWVMEFYK 184 (184)
Q Consensus 151 ~~~~~~~~~l~~aGf~~i~~~~~~~---~~~~~~~~~ 184 (184)
...++..+ +.+.||+.++...+.+ ++.++.++|
T Consensus 191 ~v~~~v~~-l~~~gf~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 191 QVFREVER-ELSEYFEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp HHHHHHHH-HHHTTSEEEEEEECTTTSSSEEEEEEEC
T ss_pred HHHHHHHH-HHHcCCEEEEEEcCCCCCCceEEEEEEe
Confidence 01123333 4567999999887643 467777776
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.3e-16 Score=120.33 Aligned_cols=118 Identities=12% Similarity=0.170 Sum_probs=95.0
Q ss_pred cccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC---------------CCCc
Q 030025 3 NHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE---------------YPGV 66 (184)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------------~~~i 66 (184)
..+......+++.+. ++++.+|||||||+|..+..+++.++..+++|+|+ +.+++.|++ ..++
T Consensus 134 e~~~~~~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i 212 (328)
T d1nw3a_ 134 ETSFDLVAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY 212 (328)
T ss_dssp CCCHHHHHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred hhHHHHHHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCce
Confidence 345567889999998 99999999999999999999999988788999999 888877753 2579
Q ss_pred eEEEcccCc-cCCC----CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 67 KHVGGDMFQ-SVPN----GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 67 ~~~~~d~~~-~~~~----~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
+++++|+.+ ++.+ +|+|++++.. |.+ +....++++.+.|||||++++.+...+..
T Consensus 213 ~~~~gd~~~~~~~~~~~~advi~~~~~~-f~~--~~~~~l~e~~r~LKpGg~iv~~~~~~~~~ 272 (328)
T d1nw3a_ 213 TLERGDFLSEEWRERIANTSVIFVNNFA-FGP--EVDHQLKERFANMKEGGRIVSSKPFAPLN 272 (328)
T ss_dssp EEEECCTTSHHHHHHHHHCSEEEECCTT-TCH--HHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred EEEECcccccccccccCcceEEEEccee-cch--HHHHHHHHHHHhCCCCcEEEEecccCCCC
Confidence 999999987 4432 3788876544 433 34578999999999999999987665543
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=3.1e-17 Score=120.06 Aligned_cols=127 Identities=15% Similarity=0.163 Sum_probs=100.4
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPN 79 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~ 79 (184)
+..|+..+. +.+..+|||+|||+|..+..+++.. |..+++++|. +++++.|+++ .++.+...|+...++.
T Consensus 92 ~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 92 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 456788888 9999999999999999999999884 7899999999 9999998774 5678888887664443
Q ss_pred C--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHH
Q 030025 80 G--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFT 157 (184)
Q Consensus 80 ~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
. |.|+ ++++++. .+++++.+.|||||++++..+..+ ......
T Consensus 171 ~~~D~V~-----~d~p~p~--~~l~~~~~~LKpGG~lv~~~P~~~-----------------------------Qv~~~~ 214 (266)
T d1o54a_ 171 KDVDALF-----LDVPDPW--NYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETL 214 (266)
T ss_dssp CSEEEEE-----ECCSCGG--GTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred cceeeeE-----ecCCCHH--HHHHHHHhhcCCCCEEEEEeCccc-----------------------------HHHHHH
Confidence 3 6665 4666664 689999999999999998553211 134566
Q ss_pred HHHHHcCCceeEEEe
Q 030025 158 TLATEAGFSGIRFVC 172 (184)
Q Consensus 158 ~~l~~aGf~~i~~~~ 172 (184)
+.+++.||..+++..
T Consensus 215 ~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 215 KKLQELPFIRIEVWE 229 (266)
T ss_dssp HHHHHSSEEEEEEEC
T ss_pred HHHHHCCceeEEEEE
Confidence 778899998887765
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=4.7e-17 Score=115.66 Aligned_cols=103 Identities=16% Similarity=0.238 Sum_probs=86.3
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~ 77 (184)
.+...+++.+. +++..+|||||||+|+.+..+++.. +..+++++|. +.+++.|+++ .++.++.+|..+ ..
T Consensus 62 ~~~a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~ 140 (213)
T d1dl5a1 62 SLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP 140 (213)
T ss_dssp HHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred hhhHHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccc
Confidence 45677889998 9999999999999999999999874 6789999999 8999988764 688899999887 33
Q ss_pred CC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 78 PN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 78 ~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.. . |+|++..+++++++ ++.+.|||||+|++..
T Consensus 141 ~~~~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 141 EFSPYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GGCCEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEEB
T ss_pred cccchhhhhhhccHHHhHH--------HHHHhcCCCcEEEEEE
Confidence 22 2 99999999998864 3567799999998843
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=1.3e-16 Score=118.49 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=80.7
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccCc---
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMFQ--- 75 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~~--- 75 (184)
+.+.+.+. ..+..+|||+|||+|..+..++++ +.+++|+|+ +.|++.|+++ ....+...|+..
T Consensus 46 ~~l~~~l~-~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (292)
T d1xvaa_ 46 AWLLGLLR-QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK 122 (292)
T ss_dssp HHHHHHHH-HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred HHHHHHhh-hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc
Confidence 44555555 556789999999999999999987 468999999 9999988653 234555666543
Q ss_pred --cCCCC-CEEEe-chhhhcCCh-----HHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 76 --SVPNG-DAILI-KWILHDWSD-----EHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 76 --~~~~~-D~i~~-~~~l~~~~~-----~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+.... |+|++ ..+++|+++ ++...+|++++++|||||+|++...
T Consensus 123 ~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 123 DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp HSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 22334 88876 468999864 3566899999999999999998643
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.65 E-value=1.5e-16 Score=112.07 Aligned_cols=97 Identities=19% Similarity=0.247 Sum_probs=78.7
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc---cCCCC--CEEEechhh
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ---SVPNG--DAILIKWIL 89 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~---~~~~~--D~i~~~~~l 89 (184)
...|||||||+|.++..+++.+|+..++|+|+ +.++..+.+. .|+.++.+|+.. .++.. |.|++.+..
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 45799999999999999999999999999998 7777766442 789999999976 24443 999888777
Q ss_pred hcCChHH------HHHHHHHHHhhCCCCcEEEEEe
Q 030025 90 HDWSDEH------CLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 90 ~~~~~~~------~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.+..... ...+++.+.++|||||.|.+.+
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 6654321 1268999999999999999864
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=1.9e-15 Score=110.59 Aligned_cols=138 Identities=14% Similarity=0.226 Sum_probs=104.9
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSV 77 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~ 77 (184)
+..++...++... ....+|||+|||+|..+..++...|+.+++++|+ +.+++.|+++ .+++++++|.++++
T Consensus 94 TE~lv~~~l~~~~--~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~ 171 (274)
T d2b3ta1 94 TECLVEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL 171 (274)
T ss_dssp HHHHHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG
T ss_pred hhhhhhhHhhhhc--ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccccc
Confidence 3445666666644 5667899999999999999999999999999999 8999998875 57999999999866
Q ss_pred CC-C-CEEEechhh-------------hcCC----------hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcccc
Q 030025 78 PN-G-DAILIKWIL-------------HDWS----------DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK 132 (184)
Q Consensus 78 ~~-~-D~i~~~~~l-------------~~~~----------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 132 (184)
++ . |+|+++-.. .|=+ -.-...+++.+.+.|+|||.+++ |...
T Consensus 172 ~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig~----------- 239 (274)
T d2b3ta1 172 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHGW----------- 239 (274)
T ss_dssp TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECCS-----------
T ss_pred CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EECc-----------
Confidence 54 3 999996322 1100 02234688999999999999988 2111
Q ss_pred chhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 133 INSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
...+.+.+++++.||..+++..-.
T Consensus 240 ------------------~q~~~v~~~l~~~gf~~i~~~kDl 263 (274)
T d2b3ta1 240 ------------------QQGEAVRQAFILAGYHDVETCRDY 263 (274)
T ss_dssp ------------------SCHHHHHHHHHHTTCTTCCEEECT
T ss_pred ------------------hHHHHHHHHHHHCCCCeEEEEECC
Confidence 025677899999999988877643
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.8e-16 Score=110.69 Aligned_cols=104 Identities=19% Similarity=0.115 Sum_probs=84.2
Q ss_pred HhHHHHHHHhc-CCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC-----------CCceEEEcc
Q 030025 7 LVLQKILEAYK-GFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY-----------PGVKHVGGD 72 (184)
Q Consensus 7 ~~~~~l~~~~~-~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~-----------~~i~~~~~d 72 (184)
.+...+++.+. ++++..+|||||||+|+.+..+++. .+..+++++|. +++++.|+++ .++.+..+|
T Consensus 61 ~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD 140 (224)
T d1i1na_ 61 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD 140 (224)
T ss_dssp HHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred HHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEee
Confidence 35667888773 2788999999999999999999887 56789999999 8999888653 578899999
Q ss_pred cCc-cCCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 73 MFQ-SVPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 73 ~~~-~~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
... ..+.+ |+|++..+++++++ .+.+.|||||+|++.-
T Consensus 141 ~~~~~~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 141 GRMGYAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp GGGCCGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred cccccchhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEEE
Confidence 887 33332 99999999998764 3668899999999843
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=2.6e-15 Score=115.32 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=89.7
Q ss_pred cccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---------------CCc
Q 030025 3 NHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---------------PGV 66 (184)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---------------~~i 66 (184)
...-.++..+++.+. ++++.++||||||+|..+..+++.++..+++|+|+ +.+++.|++. ..+
T Consensus 199 El~~~~i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~ 277 (406)
T d1u2za_ 199 ELLPNFLSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV 277 (406)
T ss_dssp CBCHHHHHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred cCCHHHHHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 345567899999998 99999999999999999999999988779999999 8898888653 122
Q ss_pred eE-EEcccCc-c-----CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 67 KH-VGGDMFQ-S-----VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 67 ~~-~~~d~~~-~-----~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
.+ ..+++.. + ++.+|+|++.+. +|. ++....|+++.+.|||||+++..+...+..
T Consensus 278 ~~~~~~~f~~~~~~d~~~~~adVV~inn~-~f~--~~l~~~L~ei~r~LKPGGrIVs~~~~~~~~ 339 (406)
T d1u2za_ 278 EFSLKKSFVDNNRVAELIPQCDVILVNNF-LFD--EDLNKKVEKILQTAKVGCKIISLKSLRSLT 339 (406)
T ss_dssp EEEESSCSTTCHHHHHHGGGCSEEEECCT-TCC--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred eeeeeechhhccccccccccceEEEEecc-cCc--hHHHHHHHHHHHhcCCCcEEEEecccCCCc
Confidence 33 3444443 1 233488887653 333 344588999999999999999987665443
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.60 E-value=2.5e-15 Score=105.78 Aligned_cols=97 Identities=20% Similarity=0.294 Sum_probs=75.6
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc---cCCCC--CEEEechhh
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ---SVPNG--DAILIKWIL 89 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~---~~~~~--D~i~~~~~l 89 (184)
...|||||||+|.++..+++.+|+..++|+|+ +.++..|.++ .|+.+..+|+.. .++.. |.|++.+.-
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 45799999999999999999999999999998 7777766442 789999999876 24443 888876554
Q ss_pred hcCChHH------HHHHHHHHHhhCCCCcEEEEEe
Q 030025 90 HDWSDEH------CLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 90 ~~~~~~~------~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
-+..... ...+|+.+.++|||||.|.+.+
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 3322110 1368999999999999998854
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.1e-15 Score=112.07 Aligned_cols=103 Identities=16% Similarity=0.213 Sum_probs=82.7
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC-----------------CCceEE
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY-----------------PGVKHV 69 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~-----------------~~i~~~ 69 (184)
+..|+..+. +.+..+|||+|||+|.++..|++. .|+.+++++|. +++++.|+++ .++.+.
T Consensus 87 ~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 87 INMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 456788888 999999999999999999999988 68899999999 8888887642 579999
Q ss_pred EcccCcc---CCC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 70 GGDMFQS---VPN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 70 ~~d~~~~---~~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..|+.+. ++. . |.|++ .++++. .++.++.++|||||+|++..+
T Consensus 166 ~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp ESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEEEEEEEEEES
T ss_pred ecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccCCCEEEEEeC
Confidence 9998762 222 2 88876 344443 579999999999999998543
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.55 E-value=4.3e-15 Score=105.81 Aligned_cols=100 Identities=14% Similarity=0.182 Sum_probs=81.7
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC----CCCceEEEcccCccCC-C-
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE----YPGVKHVGGDMFQSVP-N- 79 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~~~-~- 79 (184)
.+...+++.+. +++..+|||||||+|+.+..|++.. .+++++|. +.+.+.|++ ..++.++.+|....++ .
T Consensus 57 ~~~a~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~ 133 (224)
T d1vbfa_ 57 NLGIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEK 133 (224)
T ss_dssp HHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGC
T ss_pred hhHHHHHHHhh-hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhh
Confidence 45567889998 9999999999999999999888874 58999998 888877755 3789999999877333 2
Q ss_pred -CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 80 -GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 80 -~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+|+|++..+++++++ .+.+.|+|||+|++.
T Consensus 134 pfD~Iiv~~a~~~ip~--------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 134 PYDRVVVWATAPTLLC--------KPYEQLKEGGIMILP 164 (224)
T ss_dssp CEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred hHHHHHhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence 399999999888764 245789999999984
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=2.7e-14 Score=107.54 Aligned_cols=103 Identities=19% Similarity=0.224 Sum_probs=77.2
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCc-cCCCC--
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ-SVPNG-- 80 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~-- 80 (184)
.|.+... ..++++|||||||+|.++..++++. ..+++++|.+.+++.|++. .++.++.+|+.+ +++..
T Consensus 29 aI~~~~~-~~~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~ 106 (328)
T d1g6q1_ 29 AIIQNKD-LFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKV 106 (328)
T ss_dssp HHHHHHH-HHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCE
T ss_pred HHHhccc-cCCcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccce
Confidence 3444444 4568999999999999998777764 3589999995565555442 679999999988 66543
Q ss_pred CEEEechhhhcCChH-HHHHHHHHHHhhCCCCcEEE
Q 030025 81 DAILIKWILHDWSDE-HCLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 81 D~i~~~~~l~~~~~~-~~~~~l~~~~~~L~pgG~l~ 115 (184)
|+|++..+.+++..+ ....++....++|||||.++
T Consensus 107 D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 107 DIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 999997777765432 33468888899999999986
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.46 E-value=4.4e-14 Score=99.92 Aligned_cols=101 Identities=17% Similarity=0.241 Sum_probs=83.2
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCC-
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVP- 78 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~- 78 (184)
.+...+++.+. +++..+|||||||+|+.+..+++.. +.+++++|. +.+.+.|++. .|+.++.+|..+.++
T Consensus 65 ~~~a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~ 142 (215)
T d1jg1a_ 65 HMVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP 142 (215)
T ss_dssp HHHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred hhHHHHHHhhc-cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcc
Confidence 45678899998 9999999999999999999888875 357899998 8888888763 789999999987333
Q ss_pred C--CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 79 N--GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 79 ~--~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
. +|.|++..++.++++. +.+.|+|||+|++.
T Consensus 143 ~~pfD~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 143 KAPYDVIIVTAGAPKIPEP--------LIEQLKIGGKLIIP 175 (215)
T ss_dssp GCCEEEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred cCcceeEEeecccccCCHH--------HHHhcCCCCEEEEE
Confidence 2 2999999999887643 45679999999984
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.45 E-value=9e-14 Score=98.94 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=82.2
Q ss_pred HhHHHHHHHhc-CCCCCCeEEEecCCcChHHHHHHhhC------CCCeEEEeec-hhHhhhCCCC-----------CCce
Q 030025 7 LVLQKILEAYK-GFEHIKQLVDVGGSLGNTLKAITSKY------PHIKGINFDL-PHVIQHSPEY-----------PGVK 67 (184)
Q Consensus 7 ~~~~~l~~~~~-~~~~~~~ilDiG~G~G~~~~~l~~~~------~~~~~~~~D~-~~~~~~a~~~-----------~~i~ 67 (184)
.+...+++.+. ++.+..+|||||||+|+.+..+++.. +..+++++|. +.+++.|+++ .++.
T Consensus 65 ~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~ 144 (223)
T d1r18a_ 65 HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLL 144 (223)
T ss_dssp HHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred hhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEE
Confidence 35667888873 37899999999999999998888763 3458999999 8888888653 5899
Q ss_pred EEEcccCccC-CC--CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 68 HVGGDMFQSV-PN--GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 68 ~~~~d~~~~~-~~--~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+..+|..+.+ +. +|.|++..++.++++ .+.+.|||||++++.
T Consensus 145 ~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 145 IVEGDGRKGYPPNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVP 189 (223)
T ss_dssp EEESCGGGCCGGGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred EEecccccccccccceeeEEEEeechhchH--------HHHHhcCCCcEEEEE
Confidence 9999998732 22 399999999988764 256799999999884
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=5e-14 Score=105.53 Aligned_cols=97 Identities=18% Similarity=0.151 Sum_probs=73.3
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCC-------CCCceEEEcccCc-cCCC-C-CEEEechh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPE-------YPGVKHVGGDMFQ-SVPN-G-DAILIKWI 88 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~~-~-D~i~~~~~ 88 (184)
..++++|||||||+|.++..+++... .+++++|.+.+...+++ .+++.++.+|+.+ +.+. . |+|++...
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~ 109 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 109 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeee
Confidence 44689999999999999998887643 47999998333333322 2679999999988 5553 3 99999877
Q ss_pred hhcCChH-HHHHHHHHHHhhCCCCcEEEE
Q 030025 89 LHDWSDE-HCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 89 l~~~~~~-~~~~~l~~~~~~L~pgG~l~i 116 (184)
.+++..+ ....++..+.++|||||.++-
T Consensus 110 ~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 110 GYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 7765433 345789999999999999873
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.1e-13 Score=101.86 Aligned_cols=105 Identities=19% Similarity=0.140 Sum_probs=77.9
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC------CCCceEEEcccCc-cCCC-C
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE------YPGVKHVGGDMFQ-SVPN-G 80 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~~-~ 80 (184)
+.|.+... ..++++|||||||+|.++..++++.. .+++++|. +.+...++. .+++.++.+|+.+ ..+. .
T Consensus 25 ~ai~~~~~-~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~ 102 (311)
T d2fyta1 25 DFIYQNPH-IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEK 102 (311)
T ss_dssp HHHHHCGG-GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSC
T ss_pred HHHHhccc-cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCcccc
Confidence 44444444 56789999999999999998888753 58999998 655432221 2679999999988 5553 3
Q ss_pred -CEEEechhhhcCChH-HHHHHHHHHHhhCCCCcEEEE
Q 030025 81 -DAILIKWILHDWSDE-HCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~-~~~~~l~~~~~~L~pgG~l~i 116 (184)
|+|++....++...+ ....++....++|+|||+++-
T Consensus 103 ~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 103 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 999998877776533 334677778899999999874
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.35 E-value=5.7e-13 Score=92.54 Aligned_cols=113 Identities=20% Similarity=0.274 Sum_probs=88.6
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-----
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ----- 75 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~----- 75 (184)
-+.+++++.+. ..+...++|++||+|..+..+++++|+++++++|. +.|++.++++ .++.++.+++.+
T Consensus 10 Vll~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 10 VMVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL 88 (192)
T ss_dssp TTHHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred hHHHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH
Confidence 45788999998 88999999999999999999999999999999999 9999988763 579999998865
Q ss_pred -cCCC-C-CEEEechhh--hcC-----ChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 76 -SVPN-G-DAILIKWIL--HDW-----SDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 76 -~~~~-~-D~i~~~~~l--~~~-----~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
..+. . |.|+...-+ +++ .-......|..+.++|+|||.+++.+..
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 1222 2 888664322 111 1123347899999999999999987743
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.32 E-value=1.6e-12 Score=90.53 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=73.1
Q ss_pred CCCCCeEEEecCCcChHHHHH----Hhh----CCCCeEEEeec-hhHhhhCCCC--------------------------
Q 030025 19 FEHIKQLVDVGGSLGNTLKAI----TSK----YPHIKGINFDL-PHVIQHSPEY-------------------------- 63 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l----~~~----~~~~~~~~~D~-~~~~~~a~~~-------------------------- 63 (184)
-.+.-+|+++|||||.-...+ .+. .+.+++++.|+ +.+++.|++-
T Consensus 22 ~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~ 101 (193)
T d1af7a2 22 RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH 101 (193)
T ss_dssp SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCc
Confidence 345679999999999743333 222 13468999999 8888877531
Q ss_pred -----------CCceEEEcccCcc--CC-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 64 -----------PGVKHVGGDMFQS--VP-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 64 -----------~~i~~~~~d~~~~--~~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
..+.+...+...+ .+ .. |+|+|.+++.+++++...++++++.+.|+|||.|++.
T Consensus 102 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 102 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred cceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1244555555541 12 23 9999999999999998889999999999999999985
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.25 E-value=1.2e-11 Score=89.69 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=89.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCC-C-CEEEechh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPN-G-DAILIKWI 88 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~-~-D~i~~~~~ 88 (184)
..++.+|||+|||+|.++..++++. .++++++|+ +.+++.++++ ++++++.+|+.+-.+. . |.|++...
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 4678999999999999999999874 569999999 8888888763 5689999999873333 3 99987533
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCcee
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGI 168 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i 168 (184)
-. ...+++.+.+.|+|||++.+.+....... .....+.+.++.++.||+..
T Consensus 184 ~~------~~~~l~~a~~~l~~gG~lh~~~~~~~~~~-----------------------~~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 184 VR------THEFIPKALSIAKDGAIIHYHNTVPEKLM-----------------------PREPFETFKRITKEYGYDVE 234 (260)
T ss_dssp SS------GGGGHHHHHHHEEEEEEEEEEEEEEGGGT-----------------------TTTTHHHHHHHHHHTTCEEE
T ss_pred Cc------hHHHHHHHHhhcCCCCEEEEEeccccccc-----------------------hhhHHHHHHHHHHHcCCceE
Confidence 21 12578889999999999987665432210 01135667788889999764
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=3e-10 Score=81.88 Aligned_cols=71 Identities=7% Similarity=-0.015 Sum_probs=56.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc----C---CC--CCEE
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS----V---PN--GDAI 83 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~----~---~~--~D~i 83 (184)
+..++||+|||+|..+..++++.|+++++++|+ +.+++.|+++ .++.+...+.... . .. .|+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 456999999999999999999999999999999 9999999874 4577776554431 1 12 2999
Q ss_pred Eechhhhc
Q 030025 84 LIKWILHD 91 (184)
Q Consensus 84 ~~~~~l~~ 91 (184)
+|+-.++.
T Consensus 141 vsNPPY~~ 148 (250)
T d2h00a1 141 MCNPPFFA 148 (250)
T ss_dssp EECCCCC-
T ss_pred EecCcccc
Confidence 99877764
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=3.8e-11 Score=84.69 Aligned_cols=108 Identities=10% Similarity=0.208 Sum_probs=77.0
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~ 77 (184)
.+...++.... +++|||+|||+|..+..+++.. ++.+++++|. +.+.+.|+++ ++++++.+|..+.+
T Consensus 46 ~lL~~lv~~~k----pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l 121 (214)
T d2cl5a1 46 QIMDAVIREYS----PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLI 121 (214)
T ss_dssp HHHHHHHHHHC----CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG
T ss_pred HHHHHHHHhhC----CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccc
Confidence 34444555444 7899999999999999999886 4689999999 8888888653 56999999987621
Q ss_pred -------C-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 78 -------P-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 78 -------~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
. .. |+|++.+.- ........+.+..++|+|||.+++-+..+
T Consensus 122 ~~l~~~~~~~~~D~ifiD~~~---~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~ 171 (214)
T d2cl5a1 122 PQLKKKYDVDTLDMVFLDHWK---DRYLPDTLLLEKCGLLRKGTVLLADNVIV 171 (214)
T ss_dssp GGHHHHSCCCCEEEEEECSCG---GGHHHHHHHHHHTTCEEEEEEEEESCCCC
T ss_pred cchhhcccccccceeeecccc---cccccHHHHHHHhCccCCCcEEEEeCcCC
Confidence 1 12 888875321 11112234777888999999877744443
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.10 E-value=2.5e-11 Score=81.21 Aligned_cols=105 Identities=8% Similarity=-0.010 Sum_probs=74.4
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc--cCCC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ--SVPN 79 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~--~~~~ 79 (184)
..+.+.+...-.+.+|||+|||+|.++...+.+.. .+++++|. +.+++.+++. ++++++.+|+.+ ....
T Consensus 3 e~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~ 81 (152)
T d2esra1 3 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT 81 (152)
T ss_dssp HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC
T ss_pred HHHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccc
Confidence 44556655223678999999999999998888864 49999999 8888776553 569999999876 2222
Q ss_pred --CCEEEechhhhcCChHHHHHHHHHHH--hhCCCCcEEEEEe
Q 030025 80 --GDAILIKWILHDWSDEHCLKLLKNCH--KSIPEGGKVIVVE 118 (184)
Q Consensus 80 --~D~i~~~~~l~~~~~~~~~~~l~~~~--~~L~pgG~l~i~~ 118 (184)
.|+|++.-... .......+..+. ++|+|||.+++..
T Consensus 82 ~~fDiIf~DPPy~---~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 82 GRFDLVFLDPPYA---KETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp SCEEEEEECCSSH---HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cccceeEechhhc---cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 39999854322 122235566554 4699999988743
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=99.08 E-value=8.5e-11 Score=84.35 Aligned_cols=89 Identities=18% Similarity=0.276 Sum_probs=73.4
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~ 78 (184)
+..+++++++.+. ..+..+|||||||+|.+|..+++.. .+++++|+ +.+++.+++. +++.++.+|+.+ +++
T Consensus 14 d~~ii~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~ 90 (245)
T d1yuba_ 14 SEKVLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFP 90 (245)
T ss_dssp CTTTHHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCC
T ss_pred CHHHHHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhhccchhhhhhhhhccccc
Confidence 4567889999998 8899999999999999999999984 58999998 8888877764 689999999998 676
Q ss_pred CC-CEEEechhhhcCChHH
Q 030025 79 NG-DAILIKWILHDWSDEH 96 (184)
Q Consensus 79 ~~-D~i~~~~~l~~~~~~~ 96 (184)
.. +..++++.-+|++.+-
T Consensus 91 ~~~~~~vv~NLPY~Ist~i 109 (245)
T d1yuba_ 91 NKQRYKIVGNIPYHLSTQI 109 (245)
T ss_dssp CSSEEEEEEECCSSSCHHH
T ss_pred cceeeeEeeeeehhhhHHH
Confidence 55 5555666667888663
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.1e-10 Score=82.37 Aligned_cols=99 Identities=13% Similarity=0.222 Sum_probs=76.7
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc---C-----CCC-
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS---V-----PNG- 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~---~-----~~~- 80 (184)
..+.++|||||||+|+.+.++++..+ +.+++.+|. +...+.|+++ +++++..+|+.+. . ...
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 34589999999999999999999865 689999998 7777777653 6799999998651 1 222
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
|+|++..-= ......++.+.++|+|||.+++-+..+.
T Consensus 137 D~ifiD~dk-----~~y~~~~~~~~~lL~~GGvii~Dn~l~~ 173 (219)
T d2avda1 137 DVAVVDADK-----ENCSAYYERCLQLLRPGGILAVLRVLWR 173 (219)
T ss_dssp EEEEECSCS-----TTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred cEEEEeCCH-----HHHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 888884322 2334678999999999999999766554
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.04 E-value=1.4e-10 Score=86.78 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=74.3
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc---C---CCC-CEE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS---V---PNG-DAI 83 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~---~---~~~-D~i 83 (184)
.++..+|||+|||+|.++..++... ..+++++|. +.+++.++++ ++++++.+|+++. . ... |+|
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 3578899999999999999988874 348999999 8899888764 4678999998762 1 122 999
Q ss_pred EechhhhcCC-------hHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 84 LIKWILHDWS-------DEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 84 ~~~~~l~~~~-------~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
++.-.-.--. -....+++..+.++|+|||.|++..
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s 263 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS 263 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9843321111 1123468888999999999999976
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=99.03 E-value=2.4e-10 Score=81.54 Aligned_cols=88 Identities=10% Similarity=0.211 Sum_probs=70.4
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC----CCCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE----YPGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~ 78 (184)
+..+++++++... ..++.+|||||||+|.+|..+++.. .+++++++ +.+.+..++ .+++.++.+|+.+ +++
T Consensus 6 d~~i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~ 82 (235)
T d1qama_ 6 SKHNIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFP 82 (235)
T ss_dssp CHHHHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCC
T ss_pred CHHHHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 4678899999988 8999999999999999999999984 57888888 777766543 4789999999998 666
Q ss_pred CC-CEEEechhhhcCChH
Q 030025 79 NG-DAILIKWILHDWSDE 95 (184)
Q Consensus 79 ~~-D~i~~~~~l~~~~~~ 95 (184)
.. ...++.+.-++++.+
T Consensus 83 ~~~~~~vv~NLPYnIss~ 100 (235)
T d1qama_ 83 KNQSYKIFGNIPYNISTD 100 (235)
T ss_dssp SSCCCEEEEECCGGGHHH
T ss_pred ccccceeeeeehhhhhHH
Confidence 55 555556666666544
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.03 E-value=8.5e-10 Score=81.79 Aligned_cols=111 Identities=15% Similarity=0.194 Sum_probs=80.4
Q ss_pred hHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----------CCceEEEccc
Q 030025 8 VLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----------PGVKHVGGDM 73 (184)
Q Consensus 8 ~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------~~i~~~~~d~ 73 (184)
...+++.+.+- -+.+++||.||+|.|..+..+++..+..+++.+|+ +.+++.|+++ ++++++.+|.
T Consensus 62 ~Yhe~l~h~~l~~~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da 141 (312)
T d1uira_ 62 IYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDA 141 (312)
T ss_dssp HHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCH
T ss_pred HHHHHHhhhhhhhCCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchH
Confidence 34444444331 35678999999999999999998877889999999 8998877653 6899999999
Q ss_pred Ccc---CCCC-CEEEechh--hhcCChH---HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 74 FQS---VPNG-DAILIKWI--LHDWSDE---HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 74 ~~~---~~~~-D~i~~~~~--l~~~~~~---~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.+. .+.. |+|++... ...-... -..++++.+++.|+|||.+++..
T Consensus 142 ~~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 142 RAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp HHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 872 2333 99987432 1100000 11368999999999999998744
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.98 E-value=4.1e-10 Score=78.07 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=54.8
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCccCCCCCEEEechhh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQSVPNGDAILIKWIL 89 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~~~~~~D~i~~~~~l 89 (184)
.+++|||+|||+|.++..++...+ .+++++|+ +.+++.|+++ .+++++..|+.+..+..|+|+++-.+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPF 117 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCccc
Confidence 468999999999999987777643 48999999 8999988875 78999999987633334999987544
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.98 E-value=3.1e-10 Score=84.56 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=72.7
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc---C---CC-CCEEEec
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS---V---PN-GDAILIK 86 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~---~---~~-~D~i~~~ 86 (184)
+.++|||++||+|.++..++.. ..+++++|. +.+++.++++ .+++++.+|..+. . .. .|+|++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 5789999999999999988765 458999999 8899988764 5789999998751 1 22 3999984
Q ss_pred hhhhcCC-------hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 87 WILHDWS-------DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 87 ~~l~~~~-------~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
-.-.... .....+++..+.++|+|||.|++..-
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 3221111 12234688999999999999988653
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.97 E-value=3.3e-09 Score=75.05 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=80.7
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc-
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS- 76 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~- 76 (184)
.+...+++... +++|||||+++|+.+..+++..| +.+++.+|. +...+.|+++ ++++++.+|+.+.
T Consensus 49 ~~L~~L~~~~~----~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L 124 (227)
T d1susa1 49 QFLSMLLKLIN----AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVL 124 (227)
T ss_dssp HHHHHHHHHHT----CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred HHHHHHHHhcC----CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHH
Confidence 34444444444 89999999999999999998875 689999998 8887777763 5799999999762
Q ss_pred --C------C-CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 77 --V------P-NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 77 --~------~-~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+ . ..|+|++-.-= ......++.+.++|+|||.+++-+..+
T Consensus 125 ~~l~~~~~~~~~fD~iFiDa~k-----~~y~~~~e~~~~ll~~gGiii~DNvl~ 173 (227)
T d1susa1 125 DEMIKDEKNHGSYDFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLW 173 (227)
T ss_dssp HHHHHCGGGTTCBSEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEETTTG
T ss_pred HHHHhccccCCceeEEEeccch-----hhhHHHHHHHHhhcCCCcEEEEccCCC
Confidence 1 1 23999995321 234467999999999999999866544
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.95 E-value=2.5e-09 Score=78.83 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=73.0
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCccC------CC-CCE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQSV------PN-GDA 82 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~~~------~~-~D~ 82 (184)
..++.+|||+.||||.++..++.. ..+++++|. ..+++.|+++ .++++++.|+++.+ +. .|+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 557889999999999999988876 468999999 8899888764 35899999998621 22 399
Q ss_pred EEechh---hh----cCC-hHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 83 ILIKWI---LH----DWS-DEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 83 i~~~~~---l~----~~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
|++.-. -. .+. ......+++.+.++|+|||.+++....
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 997311 10 111 122345778889999999987776543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.94 E-value=7.1e-10 Score=80.51 Aligned_cols=80 Identities=15% Similarity=0.196 Sum_probs=62.3
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~ 76 (184)
+..++..+++... -.+..+++|+|||+|..+..+++ +|+.+++++|+ +.+++.|+++ .++.++..|..++
T Consensus 95 TE~lv~~~~~~~~-~~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~ 172 (271)
T d1nv8a_ 95 TEELVELALELIR-KYGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP 172 (271)
T ss_dssp HHHHHHHHHHHHH-HHTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG
T ss_pred hhhhhhhhhhhhc-cccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccc
Confidence 4456666666665 44567999999999999998875 68999999999 9999988764 4577888888874
Q ss_pred CC----CCCEEEec
Q 030025 77 VP----NGDAILIK 86 (184)
Q Consensus 77 ~~----~~D~i~~~ 86 (184)
.+ ..|+|+++
T Consensus 173 ~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 173 FKEKFASIEMILSN 186 (271)
T ss_dssp GGGGTTTCCEEEEC
T ss_pred cccccCcccEEEEc
Confidence 33 23999986
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.91 E-value=2.7e-09 Score=79.28 Aligned_cols=99 Identities=17% Similarity=0.080 Sum_probs=72.3
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCccC------CCC-CE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQSV------PNG-DA 82 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~~~------~~~-D~ 82 (184)
..++++|||+.||+|.++..++... ...++++|. +.+++.++++ .+++++.+|+++.+ +.. |+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 4568899999999999998777643 357999999 8888877653 46889999997621 223 99
Q ss_pred EEechhh-----hcC-C-hHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 83 ILIKWIL-----HDW-S-DEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 83 i~~~~~l-----~~~-~-~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
|++.-.- ... . .....++++.+.++|+|||.|+++.
T Consensus 221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s 263 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 263 (317)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9984210 000 1 1234578999999999999999866
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.86 E-value=8.3e-10 Score=81.03 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=81.1
Q ss_pred HhHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEccc
Q 030025 7 LVLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDM 73 (184)
Q Consensus 7 ~~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~ 73 (184)
....+++.+.+- -+.+++||-||+|.|..++.+++..+..+++.+|+ +.+++.++++ ++++++.+|.
T Consensus 73 ~~YhE~l~h~pl~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da 152 (295)
T d1inla_ 73 FMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG 152 (295)
T ss_dssp HHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred hhhhhhhcchhHhhCCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhH
Confidence 445555555441 35678999999999999999998777788999999 9999988763 6899999999
Q ss_pred Ccc---CCCC-CEEEechhhhcCChH---HHHHHHHHHHhhCCCCcEEEEE
Q 030025 74 FQS---VPNG-DAILIKWILHDWSDE---HCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 74 ~~~---~~~~-D~i~~~~~l~~~~~~---~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
.+. .+.. |+|++...-..-... -..++++.+++.|+|||.++..
T Consensus 153 ~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 153 AEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp HHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 872 2223 999974322110100 0237899999999999999884
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.82 E-value=1.1e-09 Score=74.33 Aligned_cols=105 Identities=10% Similarity=0.109 Sum_probs=66.5
Q ss_pred hHHHHHHHhc-CCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc---
Q 030025 8 VLQKILEAYK-GFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ--- 75 (184)
Q Consensus 8 ~~~~l~~~~~-~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~--- 75 (184)
+.+.+.+.+. ..++..+|||+|||+|.++..++++ ..+++++|. +.+++.++++ .++.....|...
T Consensus 27 v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~ 104 (171)
T d1ws6a1 27 LRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEA 104 (171)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHH
T ss_pred HHHHHHHHhhccccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccc
Confidence 3444444433 1467889999999999999988887 458889999 8899888764 233333444321
Q ss_pred cCC-C-CCEEEechhhhcCChHHHHHHHHHH--HhhCCCCcEEEEEe
Q 030025 76 SVP-N-GDAILIKWILHDWSDEHCLKLLKNC--HKSIPEGGKVIVVE 118 (184)
Q Consensus 76 ~~~-~-~D~i~~~~~l~~~~~~~~~~~l~~~--~~~L~pgG~l~i~~ 118 (184)
... . .|+|++.=.++ .... +.+..+ ..+|+|||.+++..
T Consensus 105 ~~~~~~fD~If~DPPY~-~~~~---~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 105 KAQGERFTVAFMAPPYA-MDLA---ALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp HHTTCCEEEEEECCCTT-SCTT---HHHHHHHHHTCEEEEEEEEEEE
T ss_pred cccCCccceeEEccccc-cCHH---HHHHHHHHcCCcCCCeEEEEEe
Confidence 112 2 39998854433 2322 223333 35799999887743
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.80 E-value=2.2e-08 Score=70.33 Aligned_cols=110 Identities=13% Similarity=0.144 Sum_probs=78.8
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCC-C
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNG-D 81 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~-D 81 (184)
..+++.|++.+. .+++.+|||.|||+|.++..+.++. ....+.++|+ +..+..++ ......+|... ..... |
T Consensus 5 ~~i~~~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---~~~~~~~~~~~~~~~~~fd 80 (223)
T d2ih2a1 5 PEVVDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---WAEGILADFLLWEPGEAFD 80 (223)
T ss_dssp HHHHHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---TEEEEESCGGGCCCSSCEE
T ss_pred HHHHHHHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---cceeeeeehhccccccccc
Confidence 467888888887 7888999999999999999888774 4467999998 66554443 45667777776 32233 8
Q ss_pred EEEechhhhcCC---h------------------------HHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 82 AILIKWILHDWS---D------------------------EHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 82 ~i~~~~~l~~~~---~------------------------~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+|+++-...... . .-...++.++.+.|+|||++.+.-+
T Consensus 81 ~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 81 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 888765543210 0 0123567889999999999988654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.78 E-value=1.3e-08 Score=70.81 Aligned_cols=70 Identities=14% Similarity=0.043 Sum_probs=54.4
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCCCCCEEEechhhhc
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVPNGDAILIKWILHD 91 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~~~D~i~~~~~l~~ 91 (184)
.+.+|||+|||+|.++..++.+.. .+++++|+ +.+++.++++ .+..++..|..+.....|+|+++-.+..
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGS 121 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSS
T ss_pred CCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcccc
Confidence 568999999999999998877643 58999999 8888887653 4578888887764333499998766543
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=2.5e-09 Score=78.16 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=81.3
Q ss_pred HhHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEccc
Q 030025 7 LVLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDM 73 (184)
Q Consensus 7 ~~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~ 73 (184)
....+++.+.+- -+.+++||-||.|.|..++.+++..+..+++.+|+ +.+++.|+++ ++++++.+|.
T Consensus 62 ~~Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da 141 (285)
T d2o07a1 62 FSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDG 141 (285)
T ss_dssp HHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred HHHHHHhccHhhhhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccH
Confidence 344555555441 34678999999999999999998777789999999 9999988763 7899999998
Q ss_pred Cc---cCCCC-CEEEechhhhcCChH---HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 74 FQ---SVPNG-DAILIKWILHDWSDE---HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 74 ~~---~~~~~-D~i~~~~~l~~~~~~---~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.. ..++. |+|++-.. .-.... -..++++.+++.|+|||.+++..
T Consensus 142 ~~~l~~~~~~yDvIi~D~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 142 FEFMKQNQDAFDVIITDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp HHHHHTCSSCEEEEEEECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHhcCCCCCCEEEEcCC-CCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 86 22233 99988532 111111 12368999999999999998854
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.76 E-value=2.1e-09 Score=78.23 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=80.6
Q ss_pred HhHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEccc
Q 030025 7 LVLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDM 73 (184)
Q Consensus 7 ~~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~ 73 (184)
....+++.+.+- .+.+++||-||.|.|..++.+++..+..+++.+|+ +.+++.|+++ ++++++.+|.
T Consensus 59 ~~Yhe~l~h~~l~~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~ 138 (274)
T d1iy9a_ 59 FVYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG 138 (274)
T ss_dssp HHHHHHHHHHHHHHSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS
T ss_pred hhchhhhccchhhccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechH
Confidence 344555554431 34678999999999999999998777789999999 9888888653 7899999998
Q ss_pred Cc---cCCCC-CEEEechhhh-----cCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 74 FQ---SVPNG-DAILIKWILH-----DWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 74 ~~---~~~~~-D~i~~~~~l~-----~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
.. ..+.. |+|++-..-. ++-. .++++.+++.|+|||.++..
T Consensus 139 ~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t---~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 139 FMHIAKSENQYDVIMVDSTEPVGPAVNLFT---KGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp HHHHHTCCSCEEEEEESCSSCCSCCCCCST---THHHHHHHHHEEEEEEEEEE
T ss_pred HHHHhhcCCCCCEEEEcCCCCCCcchhhcc---HHHHHHHHhhcCCCceEEEe
Confidence 86 22223 9998753211 1112 37899999999999999874
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.76 E-value=6.1e-09 Score=75.87 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=73.3
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC----------------CCCceEEEcccCcc---CC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE----------------YPGVKHVGGDMFQS---VP 78 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----------------~~~i~~~~~d~~~~---~~ 78 (184)
-+++++||.||+|.|..+..+++ ++..+++.+|+ +.+++.|++ .++++++.+|..+. -.
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 35779999999999999999887 45578999999 999988764 26799999998762 12
Q ss_pred CCCEEEechhhhcCChHH---HHHHHHHHHhhCCCCcEEEEEe
Q 030025 79 NGDAILIKWILHDWSDEH---CLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 79 ~~D~i~~~~~l~~~~~~~---~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.+|+|++-..- ...... ..++++.+++.|+|||.++...
T Consensus 149 ~yDvIi~D~~~-~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 149 GFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp CEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEEeCCC-CCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 23999874332 111111 1478999999999999988743
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.76 E-value=5.2e-08 Score=68.95 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=73.5
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh----CCCCeEEEeec-hhHhhhCC-CCCCceEEEcccCc--c-
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK----YPHIKGINFDL-PHVIQHSP-EYPGVKHVGGDMFQ--S- 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~-~~~~i~~~~~d~~~--~- 76 (184)
-.+.++++..+. +++|||||++.|..+..+++. .+..+++++|+ +....... ...+++++.+|..+ .
T Consensus 69 ~~~~~eli~~~K----Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~ 144 (232)
T d2bm8a1 69 QAVYHDMLWELR----PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTF 144 (232)
T ss_dssp HHHHHHHHHHHC----CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGG
T ss_pred HHHHHHHHHHhC----CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHH
Confidence 346777888876 789999999999887766543 36789999998 54433322 23889999999865 1
Q ss_pred --CCC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 77 --VPN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 77 --~~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+.. . |.|++-.. |+.. ... .-+ .+.+.|+|||++++-|.
T Consensus 145 ~~l~~~~~dlIfID~~-H~~~-~v~-~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 145 EHLREMAHPLIFIDNA-HANT-FNI-MKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp GGGSSSCSSEEEEESS-CSSH-HHH-HHH-HHHHTCCTTCEEEECSC
T ss_pred HHHHhcCCCEEEEcCC-cchH-HHH-HHH-HHhcccCcCCEEEEEcC
Confidence 122 2 88887654 5432 222 223 36689999999999764
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=3.1e-09 Score=72.92 Aligned_cols=110 Identities=10% Similarity=0.016 Sum_probs=76.5
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc-
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS- 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~- 76 (184)
++.+...+.+.+...-...+|||++||+|.++...+++.. ..++.+|. +.+++.++++ .++.++..|+.+.
T Consensus 27 ~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l 105 (183)
T d2fpoa1 27 TDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL 105 (183)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred cHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhccccceeeeeecccccc
Confidence 3445555555554112468999999999999999999864 38999998 8888776653 5788899998762
Q ss_pred -C-CCC-CEEEechhhhcCChHHHHHHHHHHHh--hCCCCcEEEEEe
Q 030025 77 -V-PNG-DAILIKWILHDWSDEHCLKLLKNCHK--SIPEGGKVIVVE 118 (184)
Q Consensus 77 -~-~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~--~L~pgG~l~i~~ 118 (184)
. ... |+|++.-....- ....++..+.+ +|+|+|.+++..
T Consensus 106 ~~~~~~fDlIf~DPPY~~~---~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 106 AQKGTPHNIVFVDPPFRRG---LLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp SSCCCCEEEEEECCSSSTT---THHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cccccccCEEEEcCccccc---hHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 2 222 999996554321 12355666654 699999888743
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.74 E-value=5.2e-09 Score=76.70 Aligned_cols=109 Identities=17% Similarity=0.243 Sum_probs=82.7
Q ss_pred HhHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEccc
Q 030025 7 LVLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDM 73 (184)
Q Consensus 7 ~~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~ 73 (184)
....+++.+++. -+.+++||-||.|.|..++.+++..+..+++.+|+ +.+++.++++ ++++.+.+|.
T Consensus 64 ~~Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da 143 (290)
T d1xj5a_ 64 CAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDG 143 (290)
T ss_dssp HHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCH
T ss_pred hHHHHHHhhHHHhhCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccH
Confidence 445666665552 25678999999999999999999777778999999 9999988763 7899999998
Q ss_pred Cc---cCCC--CCEEEechh-----hhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 74 FQ---SVPN--GDAILIKWI-----LHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 74 ~~---~~~~--~D~i~~~~~-----l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.+ ..++ +|+|++-.. ..++- ..++++.+++.|+|||.++...
T Consensus 144 ~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~---t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 144 VAFLKNAAEGSYDAVIVDSSDPIGPAKELF---EKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp HHHHHTSCTTCEEEEEECCCCTTSGGGGGG---SHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHhhccccCccEEEEcCCCCCCcchhhC---CHHHHHHHHHhcCCCcEEEEec
Confidence 76 2233 399987332 11111 2368999999999999999854
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.71 E-value=4.3e-09 Score=77.59 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=78.1
Q ss_pred hHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccC
Q 030025 8 VLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMF 74 (184)
Q Consensus 8 ~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~ 74 (184)
...+++.+.+- -+.+++||-||.|.|..++.+++..+..+++.+|+ +.+++.++++ ++++++.+|..
T Consensus 91 ~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~ 170 (312)
T d2b2ca1 91 SYQEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGF 170 (312)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHH
T ss_pred HHHHHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHH
Confidence 34455554431 35678999999999999999998776679999999 9998888663 78999999998
Q ss_pred cc---CCC-CCEEEechhhhcCC--hHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 75 QS---VPN-GDAILIKWILHDWS--DEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 75 ~~---~~~-~D~i~~~~~l~~~~--~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+. -.. +|+|++-..--.-+ .--..++++.+++.|+|||.++..
T Consensus 171 ~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 171 EFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp HHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred HHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 72 222 39999743211101 011247899999999999999985
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.68 E-value=2.2e-08 Score=68.51 Aligned_cols=110 Identities=12% Similarity=0.020 Sum_probs=80.1
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ 75 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~ 75 (184)
.+..+...+.+.+...-.+.+|||+.||+|.++...+++.. ..++.+|. +.+++.++++ .+++++..|+.+
T Consensus 24 t~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~ 102 (182)
T d2fhpa1 24 TTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR 102 (182)
T ss_dssp CCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchh
Confidence 45567777878776445789999999999999999999853 37999998 8888777653 478999999876
Q ss_pred cC------CC-CCEEEechhhhcCChHHHHHHHHHHHh--hCCCCcEEEEE
Q 030025 76 SV------PN-GDAILIKWILHDWSDEHCLKLLKNCHK--SIPEGGKVIVV 117 (184)
Q Consensus 76 ~~------~~-~D~i~~~~~l~~~~~~~~~~~l~~~~~--~L~pgG~l~i~ 117 (184)
.+ .. .|+|++.=.... . .....++.+.+ +|+|+|.+++.
T Consensus 103 ~l~~~~~~~~~fDlIflDPPY~~-~--~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 103 ALEQFYEEKLQFDLVLLDPPYAK-Q--EIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp HHHHHHHTTCCEEEEEECCCGGG-C--CHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhhhhcccCCCcceEEechhhhh-h--HHHHHHHHHHHCCCCCCCEEEEEE
Confidence 11 12 299988554332 1 22356777754 69999987763
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.65 E-value=2.5e-08 Score=74.33 Aligned_cols=101 Identities=10% Similarity=0.144 Sum_probs=73.7
Q ss_pred CCCCCeEEEecCCcChHHHHHHhh-----CCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCC-C-CCEEEe
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSK-----YPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVP-N-GDAILI 85 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~-----~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~-~-~D~i~~ 85 (184)
..+..+|||.|||+|.++..+..+ .+...++|+|+ +.++..|+.. .+..+..+|.....+ . .|+|++
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~ 194 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 194 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence 556779999999999999888754 24568999999 8888877643 567777888776322 2 399999
Q ss_pred chhhhcCChHH----------------HHHHHHHHHhhCCCCcEEEEEee
Q 030025 86 KWILHDWSDEH----------------CLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 86 ~~~l~~~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+-.+......+ ...++..+.+.|+|||++.+.-+
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 86654322111 12479999999999999887554
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.62 E-value=7.3e-08 Score=65.71 Aligned_cols=109 Identities=19% Similarity=0.274 Sum_probs=82.9
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--CCceEEEcccCc-c-----CC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--PGVKHVGGDMFQ-S-----VP 78 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--~~i~~~~~d~~~-~-----~~ 78 (184)
+.+++++.+. ..+.+.++|..+|.|.++..++++ +.+++++|. +.+++.+++. +++.+++.++.+ . ..
T Consensus 6 ll~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~ 82 (182)
T d1wg8a2 6 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG 82 (182)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcC
Confidence 5788899998 889999999999999999999997 569999999 9998887653 789999988875 1 11
Q ss_pred -CC-CEEEechhh-----hcCC--hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 79 -NG-DAILIKWIL-----HDWS--DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 79 -~~-D~i~~~~~l-----~~~~--~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.. |.|++..-+ .... -......|....+.|+|||.+++...
T Consensus 83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 22 878763321 1111 11233578889999999999998764
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=4.3e-07 Score=61.71 Aligned_cols=107 Identities=20% Similarity=0.218 Sum_probs=77.8
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeechhHhhhCCCCCCceEEEcccCc-cC--------C
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQ-SV--------P 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~--------~ 78 (184)
..+|.+.+.-+++..+|||+||+.|.++..+.++ .+...++++|+..+ +..+++.++.+|+.+ .. .
T Consensus 10 L~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T d1ej0a_ 10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred HHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhhhhcc
Confidence 4457788886788999999999999999999987 45688999998332 345789999999976 21 2
Q ss_pred C-C-CEEEechhhhcCChH---------HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 79 N-G-DAILIKWILHDWSDE---------HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 79 ~-~-D~i~~~~~l~~~~~~---------~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. . |+|++-.+..--... -....+.-+.+.|+|||.+++--.
T Consensus 86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 2 2 999886654332211 112456667888999999999553
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=2.4e-07 Score=67.10 Aligned_cols=95 Identities=16% Similarity=0.250 Sum_probs=70.0
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC----C---CCceEEEcccCc-
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE----Y---PGVKHVGGDMFQ- 75 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~---~~i~~~~~d~~~- 75 (184)
+..+++++++... ..+..+|||||+|+|.+|..|+++. .++++++. +.+++..++ . .+++++.+|+.+
T Consensus 6 d~~i~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~ 82 (278)
T d1zq9a1 6 NPLIINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 82 (278)
T ss_dssp CHHHHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred CHHHHHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh
Confidence 4577899999988 8889999999999999999999985 47888887 666655443 1 579999999998
Q ss_pred cCCCCCEEEechhhhcCChHHHHHHHHHHHhh
Q 030025 76 SVPNGDAILIKWILHDWSDEHCLKLLKNCHKS 107 (184)
Q Consensus 76 ~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~ 107 (184)
+++..+.|+.+.. +++.. .++.++...
T Consensus 83 ~~~~~~~vV~NLP-Y~Iss----~il~~~~~~ 109 (278)
T d1zq9a1 83 DLPFFDTCVANLP-YQISS----PFVFKLLLH 109 (278)
T ss_dssp CCCCCSEEEEECC-GGGHH----HHHHHHHHC
T ss_pred hhhhhhhhhcchH-HHHHH----HHHHHHHhh
Confidence 5655566665444 34433 455554443
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.53 E-value=3.2e-07 Score=64.79 Aligned_cols=108 Identities=14% Similarity=0.042 Sum_probs=68.6
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCC--C-C--CCceEEEcccCccCC-C-C
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSP--E-Y--PGVKHVGGDMFQSVP-N-G 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~--~-~--~~i~~~~~d~~~~~~-~-~ 80 (184)
...+.+... +.+..+|+|+|||.|.++..++++.+...+.++++ -...+.-. + + +-+.+...+.....+ . .
T Consensus 55 l~~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~ 133 (257)
T d2p41a1 55 LRWFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERC 133 (257)
T ss_dssp HHHHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcC
Confidence 445666665 88889999999999999999998866667777776 22111111 1 1 223443333322222 2 3
Q ss_pred CEEEechhhhc----CChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 81 DAILIKWILHD----WSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 81 D~i~~~~~l~~----~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
|+|+|--+-.. .+.....++++-+.++|+|||.+++-
T Consensus 134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 99998643221 11223447888889999999998874
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=6.1e-08 Score=69.45 Aligned_cols=87 Identities=11% Similarity=0.138 Sum_probs=66.6
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~ 78 (184)
+..++++|++.+. ..++..|||||||+|.+|..|+++. .+++++++ +.+++..++. ++++++.+|+.+ +++
T Consensus 6 d~~~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~ 82 (252)
T d1qyra_ 6 DQFVIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG 82 (252)
T ss_dssp CHHHHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred CHHHHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhccc
Confidence 4678899999998 8889999999999999999999985 47888888 7777665442 789999999987 432
Q ss_pred C------CCEEEechhhhcCCh
Q 030025 79 N------GDAILIKWILHDWSD 94 (184)
Q Consensus 79 ~------~D~i~~~~~l~~~~~ 94 (184)
. .-+.++.+.-+++..
T Consensus 83 ~~~~~~~~~~~vvgNlPY~Iss 104 (252)
T d1qyra_ 83 ELAEKMGQPLRVFGNLPYNIST 104 (252)
T ss_dssp HHHHHHTSCEEEEEECCTTTHH
T ss_pred ccccccCCCeEEEecchHHHHH
Confidence 1 134555566566554
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.48 E-value=1.6e-07 Score=65.27 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=70.5
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-h---hHhhhCCC---CCCceEEEcccCccCC--CCCEEEechhhhc
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-P---HVIQHSPE---YPGVKHVGGDMFQSVP--NGDAILIKWILHD 91 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~---~~~~~a~~---~~~i~~~~~d~~~~~~--~~D~i~~~~~l~~ 91 (184)
+..+|+|+|+|.|--+..++-.+|+.+++.+|. . .+++.+.. ..|++++...+++..+ ..|+|++..+-
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~-- 142 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA-- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence 467999999999999999999999999999995 2 23333221 2689999998887322 23999886653
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+. ..+++-+.+.++|||.+++.-
T Consensus 143 --~~--~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 143 --SL--NDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --SH--HHHHHHHTTSEEEEEEEEEEE
T ss_pred --CH--HHHHHHHHHhcCCCcEEEEEC
Confidence 22 368999999999999999843
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.11 E-value=1.2e-06 Score=61.97 Aligned_cols=94 Identities=16% Similarity=0.261 Sum_probs=70.3
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-h---hHhhhCCC---CCCceEEEcccCc-c----CCCC-CEEEe
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-P---HVIQHSPE---YPGVKHVGGDMFQ-S----VPNG-DAILI 85 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~---~~~~~a~~---~~~i~~~~~d~~~-~----~~~~-D~i~~ 85 (184)
+....+++|||+|.|--+..++=.+|+.+++.+|. . .+++.+.+ ..++.++...+++ . .... |+|++
T Consensus 68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence 34568999999999999999998899999999995 2 23333322 2688888877764 1 1223 99999
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
..+-. - ..+++-+...+++||++++.-
T Consensus 148 RAva~----l--~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 148 RAVAR----L--SVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp ECCSC----H--HHHHHHHGGGEEEEEEEEEEE
T ss_pred hhhhC----H--HHHHHHHhhhcccCCEEEEEC
Confidence 75532 2 368999999999999998843
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.06 E-value=5.4e-06 Score=62.06 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=72.0
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~ 78 (184)
..+++.+++.+. ..+..+|||+-||+|.++..|++.. .+++++|. +.+++.|++. .|+.|+.+|..+.+.
T Consensus 198 e~l~~~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~ 274 (358)
T d1uwva2 198 QKMVARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 274 (358)
T ss_dssp HHHHHHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCS
T ss_pred hHHHHHHHHhhc-cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhh
Confidence 455667777777 7788999999999999999998874 58999999 8888888763 679999999876221
Q ss_pred ------CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 79 ------NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 79 ------~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.. |+|++.=.=.-. .++++.+.+. +|.-.+++
T Consensus 275 ~~~~~~~~~d~vilDPPR~G~-----~~~~~~l~~~-~~~~ivYV 313 (358)
T d1uwva2 275 KQPWAKNGFDKVLLDPARAGA-----AGVMQQIIKL-EPIRIVYV 313 (358)
T ss_dssp SSGGGTTCCSEEEECCCTTCC-----HHHHHHHHHH-CCSEEEEE
T ss_pred hhhhhhccCceEEeCCCCccH-----HHHHHHHHHc-CCCEEEEE
Confidence 22 888873221111 1345555554 56545544
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.04 E-value=3.4e-06 Score=64.70 Aligned_cols=114 Identities=17% Similarity=0.147 Sum_probs=81.4
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-------------CCeEEEeec-hhHhhhCCC--------
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-------------HIKGINFDL-PHVIQHSPE-------- 62 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-------------~~~~~~~D~-~~~~~~a~~-------- 62 (184)
.+.+++.|++.+. ..+..+|+|-+||+|.++..+.++.. ...+.|+|. +.+...|+-
T Consensus 147 P~~Iv~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~ 225 (425)
T d2okca1 147 PRPLIQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG 225 (425)
T ss_dssp CHHHHHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred chhhhHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence 3567888888887 66788999999999999988876531 235789998 766665542
Q ss_pred CCCceEEEcccCccCC-CC-CEEEechhhhcCC---------------hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 63 YPGVKHVGGDMFQSVP-NG-DAILIKWILHDWS---------------DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 63 ~~~i~~~~~d~~~~~~-~~-D~i~~~~~l~~~~---------------~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.++......|.....+ .. |+|+++-.+..-. ......++..+.+.|+|||++.+.-+
T Consensus 226 ~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 226 TDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp SSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 2456778888876333 23 9999876663211 01123689999999999999888654
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.98 E-value=8.9e-05 Score=55.16 Aligned_cols=150 Identities=16% Similarity=0.105 Sum_probs=89.2
Q ss_pred CCCCeEEEecCCcChHHHHHH--------hh--------CCCCeEEEeech--hHhhhCCCC-------CC--ceEEEcc
Q 030025 20 EHIKQLVDVGGSLGNTLKAIT--------SK--------YPHIKGINFDLP--HVIQHSPEY-------PG--VKHVGGD 72 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~--------~~--------~~~~~~~~~D~~--~~~~~a~~~-------~~--i~~~~~d 72 (184)
++.-+|.|+||.+|.++..+. ++ .|..++..-|+| ++=...+.. ++ +.-+.+.
T Consensus 50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGS 129 (359)
T d1m6ex_ 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCc
Confidence 344679999999998883222 11 256677888862 222222221 22 3446788
Q ss_pred cCc-cCCCC--CEEEechhhhcCCh-------------------------------HHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 73 MFQ-SVPNG--DAILIKWILHDWSD-------------------------------EHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 73 ~~~-~~~~~--D~i~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+.. -+|.. |+++++.++||++. .+-..+|+.=.+-|+|||++++.-
T Consensus 130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 887 67765 99999999999752 122346666667799999999988
Q ss_pred eecCCCCCCCccccchhhhhhHh-----hh------------hCCCccccCHHHHHHHHHHcC-CceeEEE
Q 030025 119 SVLPELPENGTHSKINSLADVLV-----MT------------QYPGGKERTKHEFTTLATEAG-FSGIRFV 171 (184)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~l~~aG-f~~i~~~ 171 (184)
...++...... .....++... +. .......++.+|+...+++.| |.+.++.
T Consensus 210 ~gr~~~~~~~~--~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e 278 (359)
T d1m6ex_ 210 LGRRSEDRAST--ECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EECSSSSSSST--TTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred eccCCCCCCCC--ccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeE
Confidence 77654321110 0001111110 00 011223459999999999988 5555443
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.93 E-value=2.4e-06 Score=58.10 Aligned_cols=110 Identities=10% Similarity=0.024 Sum_probs=70.9
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQ 75 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~ 75 (184)
+..+.+.+.+.+...-...+|||+-||||.++...+++.. ..++.+|. +..++..+++ ....+...|..+
T Consensus 27 ~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~ 105 (183)
T d2ifta1 27 GDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLD 105 (183)
T ss_dssp -CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHH
T ss_pred cHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhcccccccccccccccc
Confidence 3445555555554111467999999999999999999964 48999998 7666555442 235556666543
Q ss_pred ----cCCC--CCEEEechhhhcCChHHHHHHHHHHHh--hCCCCcEEEEEe
Q 030025 76 ----SVPN--GDAILIKWILHDWSDEHCLKLLKNCHK--SIPEGGKVIVVE 118 (184)
Q Consensus 76 ----~~~~--~D~i~~~~~l~~~~~~~~~~~l~~~~~--~L~pgG~l~i~~ 118 (184)
.... .|+|++.=.... . ....+++.+.. +|+++|.+++..
T Consensus 106 ~l~~~~~~~~fDlIFlDPPY~~-~--~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 106 FLKQPQNQPHFDVVFLDPPFHF-N--LAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp HTTSCCSSCCEEEEEECCCSSS-C--HHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cccccccCCcccEEEechhHhh-h--hHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 1112 399988555432 2 23366777755 689999887743
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=97.85 E-value=4.1e-05 Score=55.75 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=73.9
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCC---------CCCceEEEcccCccC----------CCC
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPE---------YPGVKHVGGDMFQSV----------PNG 80 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~----------~~~ 80 (184)
.+...|+.+|||.-.....+ ...+++++..+|.+++++.-++ ..+..++..|+.+++ ++.
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 45567888999999888766 3457889999998777653222 144677788876532 122
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
-++++.+++++++.++...+|+.+.....||+.+++.
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 5778889999999999999999999999999998874
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=5.5e-05 Score=54.74 Aligned_cols=109 Identities=13% Similarity=0.205 Sum_probs=69.9
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc---cCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ---SVP 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~---~~~ 78 (184)
.......+. ..+..+|||+++|.|.=+..+++...+.+++++|. +.-++..++. .++.....|... ..+
T Consensus 91 S~l~~~~L~-~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~ 169 (284)
T d1sqga2 91 AQGCMTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGE 169 (284)
T ss_dssp HHTHHHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTT
T ss_pred ccccccccC-ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhccc
Confidence 334444555 77889999999999999999999887789999997 4443333221 334444444332 122
Q ss_pred CC-CEEEe------chhhhcCCh-------H-------HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 79 NG-DAILI------KWILHDWSD-------E-------HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 79 ~~-D~i~~------~~~l~~~~~-------~-------~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.. |.|++ .+++..-++ . -..++|+++.+.|||||+|+-+.
T Consensus 170 ~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT 230 (284)
T d1sqga2 170 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 230 (284)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 22 77765 222211111 1 12478899999999999998865
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.67 E-value=2.7e-05 Score=57.38 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=53.6
Q ss_pred ccHHhHHHHHHHhcCCC------CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC---CCCceEEEccc
Q 030025 4 HTTLVLQKILEAYKGFE------HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE---YPGVKHVGGDM 73 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~------~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~ 73 (184)
.+..+++++++.+. +. .+.+|||||+|.|.+|..++++...-++++++. +.+.+..++ ..++.++.+|+
T Consensus 21 ~d~~i~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~ 99 (322)
T d1i4wa_ 21 WNPTVYNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDP 99 (322)
T ss_dssp CCHHHHHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCT
T ss_pred CCHHHHHHHHHHhc-CCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCch
Confidence 35677888988876 44 456899999999999999998743347888887 655554433 36799999998
Q ss_pred Cc
Q 030025 74 FQ 75 (184)
Q Consensus 74 ~~ 75 (184)
..
T Consensus 100 l~ 101 (322)
T d1i4wa_ 100 YD 101 (322)
T ss_dssp TC
T ss_pred hh
Confidence 74
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.60 E-value=0.00029 Score=51.85 Aligned_cols=102 Identities=12% Similarity=0.162 Sum_probs=79.0
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCC---------------------------CCCceEEEcc
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPE---------------------------YPGVKHVGGD 72 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------------------------~~~i~~~~~d 72 (184)
.+...|+-+|||.-.....+.+.+++++++.+|.|++++.-++ .++...+..|
T Consensus 95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 3456899999999999999988889999999998655542110 1467888888
Q ss_pred cCc-cC----------CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 73 MFQ-SV----------PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 73 ~~~-~~----------~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
+.+ .+ ++. -++++..++.++++++...+++.+.+.. |+|.+++.|+..+
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f-~~~~~i~YE~i~~ 235 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGG 235 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhC-CCceEEEeccCCC
Confidence 876 21 111 5789999999999999999999999988 5677888898754
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.48 E-value=0.00015 Score=53.16 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=70.6
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c-CCC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S-VPN 79 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~-~~~ 79 (184)
......+. ..+..+|||++||.|.-+..++... ....+++.|. +.-++..++. .++.....|... + ...
T Consensus 106 ~l~~~~l~-~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~ 184 (313)
T d1ixka_ 106 MYPPVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNV 184 (313)
T ss_dssp HHHHHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCC
T ss_pred cchhhccc-CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 33444555 6788999999999999999998874 4578999997 5444443331 567777677654 2 222
Q ss_pred C-CEEEec------hhhhc-------CCh-------HHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 80 G-DAILIK------WILHD-------WSD-------EHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 80 ~-D~i~~~------~~l~~-------~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. |.|++- +++.. +.. .-..++|+++.+.+||||+|+-++=
T Consensus 185 ~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC 245 (313)
T d1ixka_ 185 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 245 (313)
T ss_dssp CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred cccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence 2 777651 11111 111 1123678899999999999888653
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.43 E-value=0.0001 Score=55.34 Aligned_cols=105 Identities=11% Similarity=0.026 Sum_probs=75.3
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---C-----------------
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---P----------------- 64 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~----------------- 64 (184)
+.+.-.+++.+. ..+|||..||+|..+.+.+...+..+++..|+ +..++.++++ +
T Consensus 34 RDlsvl~~~~~~----~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~ 109 (375)
T d2dula1 34 RDIVVVLLNILN----PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE 109 (375)
T ss_dssp HHHHHHHHHHHC----CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS
T ss_pred hHHHHHHHHHhC----CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCcccccccccccccccc
Confidence 344444555554 78999999999999998888776678999999 8888887653 1
Q ss_pred -CceEEEcccCc---cCCCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 65 -GVKHVGGDMFQ---SVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 65 -~i~~~~~d~~~---~~~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.+.+...|+.. ..... |+|.+-- +..+ ..+++.+.+.++.||.|.++-..
T Consensus 110 ~~~~~~~~Da~~~~~~~~~~fDvIDiDP----fGs~--~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 110 KTIVINHDDANRLMAERHRYFHFIDLDP----FGSP--MEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp SEEEEEESCHHHHHHHSTTCEEEEEECC----SSCC--HHHHHHHHHHEEEEEEEEEEECC
T ss_pred ceeEeehhhhhhhhHhhcCcCCcccCCC----CCCc--HHHHHHHHHHhccCCEEEEEecC
Confidence 24455566543 12333 9888743 3433 36899999999999999997543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.00014 Score=56.97 Aligned_cols=113 Identities=15% Similarity=0.172 Sum_probs=74.3
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC----C--------------CCeEEEeec-hhHhhhCCCC--
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY----P--------------HIKGINFDL-PHVIQHSPEY-- 63 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~----~--------------~~~~~~~D~-~~~~~~a~~~-- 63 (184)
.+.+++.|++.+. ..+..+|+|-+||+|.++....+.. . ...+.|.|+ +.+...|+-.
T Consensus 149 P~~Iv~~mv~ll~-~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~ 227 (524)
T d2ar0a1 149 PRPLIKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 227 (524)
T ss_dssp CHHHHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred ccchhHhhhhccc-CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 4567888888877 5667899999999999998766542 1 125789998 7666655321
Q ss_pred ---------CCceEEEcccCc-c---CCCCCEEEechhhhcC-------------ChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 64 ---------PGVKHVGGDMFQ-S---VPNGDAILIKWILHDW-------------SDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 64 ---------~~i~~~~~d~~~-~---~~~~D~i~~~~~l~~~-------------~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
.+-.+...+... + ....|+|+++-.+..- ...+ ..++..+.+.|+|||++.+.
T Consensus 228 l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~gGr~aiI 306 (524)
T d2ar0a1 228 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ-LCFMQHIIETLHPGGRAAVV 306 (524)
T ss_dssp TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH-HHHHHHHHHHEEEEEEEEEE
T ss_pred hhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhcccccccc-HHHHHHHHHhccccCcEEEE
Confidence 122344444443 1 1223998886655321 1122 36899999999999999886
Q ss_pred ee
Q 030025 118 ES 119 (184)
Q Consensus 118 ~~ 119 (184)
-+
T Consensus 307 lP 308 (524)
T d2ar0a1 307 VP 308 (524)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.19 E-value=0.0016 Score=42.87 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=60.7
Q ss_pred eEEEecCCc--ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCCCEEEechhhhcCChHHHHH
Q 030025 24 QLVDVGGSL--GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 24 ~ilDiG~G~--G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
+|+=||||. |.+++.+.+..+..+++++|. +..++.+++...+.....+... .....|+|++.-. .....+
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p-----~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSP-----VRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSC-----HHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCC-----chhhhh
Confidence 588899983 456767777767789999998 7888887766545444444433 2223498887444 345568
Q ss_pred HHHHHHhhCCCCcEEE
Q 030025 100 LLKNCHKSIPEGGKVI 115 (184)
Q Consensus 100 ~l~~~~~~L~pgG~l~ 115 (184)
+++++.+.++++-.++
T Consensus 78 vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 78 IAKKLSYILSEDATVT 93 (171)
T ss_dssp HHHHHHHHSCTTCEEE
T ss_pred hhhhhhcccccccccc
Confidence 8999999999886554
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.0011 Score=47.88 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=46.3
Q ss_pred HHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc
Q 030025 13 LEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ 75 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~ 75 (184)
...+. ..+..+|||+++|.|.-+..+++. ....+++++|. +.-++..+++ .++.+...|..+
T Consensus 87 ~~~L~-~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~ 156 (293)
T d2b9ea1 87 AMLLD-PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA 156 (293)
T ss_dssp HHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred ccccC-CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhh
Confidence 34445 677889999999999999999877 45678999998 5544444332 678888888765
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.89 E-value=0.0022 Score=43.39 Aligned_cols=107 Identities=13% Similarity=0.002 Sum_probs=68.6
Q ss_pred HHHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc---------CCCC-
Q 030025 13 LEAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS---------VPNG- 80 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~---------~~~~- 80 (184)
++... +++..+||-+|||. |..+..+++.....+++.+|. +.-++.|++.. ..........+ -+..
T Consensus 18 ~~~a~-v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G-a~~~~~~~~~~~~~~i~~~t~g~g~ 95 (195)
T d1kola2 18 AVTAG-VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG-FEIADLSLDTPLHEQIAALLGEPEV 95 (195)
T ss_dssp HHHTT-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT-CEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred HHHhC-CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc-ccEEEeCCCcCHHHHHHHHhCCCCc
Confidence 34555 88999999999997 667777777776679999998 77788877663 22222111111 1223
Q ss_pred CEEEechhh------hc-CChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 81 DAILIKWIL------HD-WSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 81 D~i~~~~~l------~~-~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
|+++-..-. ++ +........++.+.+.++|||++++.....
T Consensus 96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~ 143 (195)
T d1kola2 96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYV 143 (195)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCC
T ss_pred EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecC
Confidence 777643211 11 110111257999999999999999976543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.89 E-value=0.00069 Score=44.69 Aligned_cols=99 Identities=12% Similarity=0.045 Sum_probs=62.7
Q ss_pred HHHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc-ccCc---cCCCC-CEEEe
Q 030025 13 LEAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG-DMFQ---SVPNG-DAILI 85 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~-d~~~---~~~~~-D~i~~ 85 (184)
+.... .++..+||-+|+| .|..+..+++.. +++++++|. +.-++.+++..--.++.. +..+ ..... |+++.
T Consensus 20 l~~~~-~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~ 97 (168)
T d1piwa2 20 LVRNG-CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVV 97 (168)
T ss_dssp HHHTT-CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred HHHhC-cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEE
Confidence 34555 8899999999998 677777777764 689999998 777777766521122221 1111 12233 87765
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
...-.+ + ..++...+.++|+|++++...
T Consensus 98 ~~~~~~--~----~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 98 CASSLT--D----IDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp CCSCST--T----CCTTTGGGGEEEEEEEEECCC
T ss_pred EecCCc--c----chHHHHHHHhhccceEEEecc
Confidence 322111 0 125667889999999999753
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.0053 Score=40.27 Aligned_cols=98 Identities=9% Similarity=0.002 Sum_probs=63.9
Q ss_pred HHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc----------CCCC-
Q 030025 14 EAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS----------VPNG- 80 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~----------~~~~- 80 (184)
+..+ ..+..+|+=+|||. |..+..+++.....+++++|. +.-++.+++..--.+...+-.++ .+..
T Consensus 20 ~~~~-~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~ 98 (171)
T d1pl8a2 20 RRGG-VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKP 98 (171)
T ss_dssp HHHT-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred HHhC-CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCc
Confidence 4445 78889999999984 555566666654448999998 88888887652222222221111 1223
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
|+++-.. +.+ ..++...+.++|||++++....
T Consensus 99 Dvvid~~-----G~~---~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 99 EVTIECT-----GAE---ASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp SEEEECS-----CCH---HHHHHHHHHSCTTCEEEECSCC
T ss_pred eEEEecc-----CCc---hhHHHHHHHhcCCCEEEEEecC
Confidence 8776532 222 4689999999999999997643
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.82 E-value=0.0027 Score=41.51 Aligned_cols=95 Identities=11% Similarity=0.084 Sum_probs=62.0
Q ss_pred HHHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccC-------CCC-CE
Q 030025 13 LEAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSV-------PNG-DA 82 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~-------~~~-D~ 82 (184)
++... .++..+|+=+|+| .|..+..+++.. ..+++.+|. +.-++.+++..--.++..+-.+.. ... |.
T Consensus 20 l~~~~-~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~ 97 (166)
T d1llua2 20 LKQTN-ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGV 97 (166)
T ss_dssp HHHHT-CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred HHHhC-CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccc
Confidence 45556 7888999999988 566777777766 589999998 777777776633333322222211 112 33
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
|++... . ..++...+.|+|||++++..
T Consensus 98 i~~~~~------~---~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 98 LVTAVS------N---SAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp EECCSC------H---HHHHHHHTTEEEEEEEEECC
T ss_pred cccccc------c---hHHHHHHHHhcCCcEEEEEE
Confidence 333221 2 35788999999999999865
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.78 E-value=0.0081 Score=39.65 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=67.5
Q ss_pred HHHHHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-c--------CCC
Q 030025 11 KILEAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-S--------VPN 79 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~--------~~~ 79 (184)
.+++... +++..+||=+|||. |..+..+++.....+++..|. +.-++.+++..-...+...-.+ . .+.
T Consensus 19 a~~~~a~-v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (174)
T d1e3ia2 19 AAINTAK-VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAG 97 (174)
T ss_dssp HHHTTSC-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred HHHHhhC-CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcC
Confidence 3444445 88899999999996 888888888876568889998 7777777776333333211111 1 122
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCC-cEEEEEee
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEG-GKVIVVES 119 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 119 (184)
. |+++-.. ..+ ..+....+.++|| |++++.-.
T Consensus 98 G~d~vie~~-----G~~---~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 98 GVDYSLDCA-----GTA---QTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp CBSEEEESS-----CCH---HHHHHHHHTBCTTTCEEEECCC
T ss_pred CCcEEEEec-----ccc---hHHHHHHHHhhcCCeEEEecCC
Confidence 3 7775532 223 4699999999996 99999654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.75 E-value=0.0085 Score=39.11 Aligned_cols=98 Identities=11% Similarity=0.063 Sum_probs=64.8
Q ss_pred HHHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCC-CceEEEcccCcc-----------CC
Q 030025 13 LEAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYP-GVKHVGGDMFQS-----------VP 78 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~-~i~~~~~d~~~~-----------~~ 78 (184)
++... .++..+||-+||| .|..+..+++.. +++++++|. +.-++.+++.. ...+...+.... .+
T Consensus 19 ~~~~~-~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 19 CRRAG-VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp HHHHT-CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred HHHhC-CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccc
Confidence 34455 7888999999988 667777777665 579999998 77777777652 222221111111 12
Q ss_pred CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 79 NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 79 ~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.. |+|+-.. ..+ ..++.+.++++|+|++++....
T Consensus 97 ~g~D~vid~~-----g~~---~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 97 DLPNVTIDCS-----GNE---KCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp SCCSEEEECS-----CCH---HHHHHHHHHSCTTCEEEECSCC
T ss_pred cCCceeeecC-----CCh---HHHHHHHHHHhcCCceEEEecC
Confidence 33 7776532 222 4688899999999999997643
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.57 E-value=0.0026 Score=41.80 Aligned_cols=100 Identities=20% Similarity=0.238 Sum_probs=63.8
Q ss_pred HHHHhcCCCCCCeEEEecC-C-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc--------CCCC
Q 030025 12 ILEAYKGFEHIKQLVDVGG-S-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS--------VPNG 80 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~-G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~--------~~~~ 80 (184)
.+.... .++..+||=+|| | .|..+..+++.....+++.+|. +.-++.+++..--.++..+-.+. .+..
T Consensus 19 al~~~~-~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (170)
T d1jvba2 19 AVRKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKG 97 (170)
T ss_dssp HHHHTT-CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred HHHHhC-CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhccc
Confidence 455666 888999999996 3 5666676777665578999997 66666665542112222222211 1233
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
|+++-... .+ ..++.+.+.++|||++++....
T Consensus 98 ~d~vid~~g-----~~---~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 98 VDAVIDLNN-----SE---KTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp EEEEEESCC-----CH---HHHTTGGGGEEEEEEEEECCSS
T ss_pred chhhhcccc-----cc---hHHHhhhhhcccCCEEEEeccc
Confidence 77765322 22 4578889999999999987643
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.50 E-value=0.0052 Score=40.74 Aligned_cols=100 Identities=19% Similarity=0.114 Sum_probs=63.6
Q ss_pred HHHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-----------cCCC
Q 030025 13 LEAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-----------SVPN 79 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-----------~~~~ 79 (184)
+......++..+||-+|+| .|..+..+++.....+++++|. +.-++.+++..--..+...-.+ .-+.
T Consensus 20 l~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~ 99 (182)
T d1vj0a2 20 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGR 99 (182)
T ss_dssp HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred HHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCC
Confidence 3343337788999999988 4778888888764348999998 7777777765221222111111 1122
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+ |+|+-.. ..+ ..++...+.++|||++++....
T Consensus 100 g~Dvvid~v-----G~~---~~~~~a~~~l~~~G~iv~~G~~ 133 (182)
T d1vj0a2 100 GADFILEAT-----GDS---RALLEGSELLRRGGFYSVAGVA 133 (182)
T ss_dssp CEEEEEECS-----SCT---THHHHHHHHEEEEEEEEECCCC
T ss_pred CceEEeecC-----Cch---hHHHHHHHHhcCCCEEEEEeec
Confidence 3 7776422 212 3588889999999999887643
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.44 E-value=0.011 Score=38.63 Aligned_cols=93 Identities=11% Similarity=0.036 Sum_probs=60.6
Q ss_pred CCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-------cCCCC-CEEEechh
Q 030025 19 FEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-------SVPNG-DAILIKWI 88 (184)
Q Consensus 19 ~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-------~~~~~-D~i~~~~~ 88 (184)
.++..+||-+|+|. |..+..+++.....+++++|. +.-++.+++.....++..+-.. .-+.. |+++-..
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~- 108 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV- 108 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESS-
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEec-
Confidence 57788999999884 455566666655568888998 7667777766433444332111 01223 6665432
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..+ ..++...+.++|||++++...
T Consensus 109 ----g~~---~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 109 ----GSQ---ATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp ----CCH---HHHHHGGGGEEEEEEEEECCC
T ss_pred ----Ccc---hHHHHHHHHHhCCCEEEEEeC
Confidence 222 458899999999999998663
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.43 E-value=0.0032 Score=41.58 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=64.5
Q ss_pred HHHHHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc------C-CCC-
Q 030025 11 KILEAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS------V-PNG- 80 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~------~-~~~- 80 (184)
.+.+... .++..+||=+||| .|..+..+++.....+++..|. +.-++.+++..-.+++..+-.+. . +..
T Consensus 19 a~~~~~~-~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~ 97 (174)
T d1f8fa2 19 ACINALK-VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGV 97 (174)
T ss_dssp HHHTTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred HHHHhhC-CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCC
Confidence 3455555 8889999999988 4456666666665557788887 76777776654334443332221 1 223
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
|+|+-.. ..+ ..++.+.+.++|+|++++...
T Consensus 98 D~vid~~-----G~~---~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 98 NFALEST-----GSP---EILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEEEECS-----CCH---HHHHHHHHTEEEEEEEEECCC
T ss_pred cEEEEcC-----CcH---HHHHHHHhcccCceEEEEEee
Confidence 7765422 222 468889999999999998654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.35 E-value=0.0024 Score=42.31 Aligned_cols=98 Identities=15% Similarity=0.086 Sum_probs=64.3
Q ss_pred HHHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc------cC--CCC-C
Q 030025 13 LEAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ------SV--PNG-D 81 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~------~~--~~~-D 81 (184)
++... .++..+||=+|||. |..+..+++.....+++++|. +.-++.+++..-.+++...-.+ .. +.. |
T Consensus 20 ~~~a~-~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D 98 (174)
T d1jqba2 20 AELAD-IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVD 98 (174)
T ss_dssp HHHTT-CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEE
T ss_pred HHHhC-CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcc
Confidence 34555 88899999999985 788888888764447999998 6667777665322333222111 11 223 7
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+|+-... .+ ..++...+.++|+|++++...
T Consensus 99 ~vid~~g-----~~---~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 99 RVIMAGG-----GS---ETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp EEEECSS-----CT---THHHHHHHHEEEEEEEEECCC
T ss_pred eEEEccC-----CH---HHHHHHHHHHhcCCEEEEEee
Confidence 7655322 12 357888999999999999654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.004 Score=40.78 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=61.9
Q ss_pred HHHHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc---cCCCC-CEEEe
Q 030025 12 ILEAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ---SVPNG-DAILI 85 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~~~-D~i~~ 85 (184)
.++... .++..+||=+|+| .|..+..+++.. .++.+.+|. +.-.+.+++..--.++...-.. ..... |+++-
T Consensus 22 al~~~~-~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid 99 (168)
T d1uufa2 22 PLRHWQ-AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILN 99 (168)
T ss_dssp HHHHTT-CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEE
T ss_pred HHHHhC-CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeee
Confidence 345556 8899999999987 577777788776 577788886 5555665554222222222111 11223 87765
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
...- + ..++...+.++|+|++++...
T Consensus 100 ~~g~-----~---~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 100 TVAA-----P---HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp CCSS-----C---CCHHHHHTTEEEEEEEEECCC
T ss_pred eeec-----c---hhHHHHHHHHhcCCEEEEecc
Confidence 3321 1 237778899999999999653
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.00 E-value=0.029 Score=36.23 Aligned_cols=86 Identities=12% Similarity=0.016 Sum_probs=54.7
Q ss_pred CeEEEecCC--cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHH
Q 030025 23 KQLVDVGGS--LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 23 ~~ilDiG~G--~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
++|.=||+| -+.+++.+.+. +.++++.|. +..++.+++...+... .+..+...++|+|+..- +.....+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~~-~~~~~~~~~~DiIilav-----p~~~~~~ 72 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEA-GQDLSLLQTAKIIFLCT-----PIQLILP 72 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEE-ESCGGGGTTCSEEEECS-----CHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhcccee-eeecccccccccccccC-----cHhhhhh
Confidence 356778776 33455555544 568899998 7777766654333322 22223344559988733 4456668
Q ss_pred HHHHHHhhCCCCcEEEE
Q 030025 100 LLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 100 ~l~~~~~~L~pgG~l~i 116 (184)
+++++...++|+-.++-
T Consensus 73 vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 73 TLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp HHHHHGGGSCTTCEEEE
T ss_pred hhhhhhhhcccccceee
Confidence 99999999998876653
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.88 E-value=0.014 Score=37.81 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=58.8
Q ss_pred HHHHhcCCCCCCeEEEecCCcC-hHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc--------CCCCC
Q 030025 12 ILEAYKGFEHIKQLVDVGGSLG-NTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS--------VPNGD 81 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G~G-~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~--------~~~~D 81 (184)
.+.... ..+..+||=.|+|.- ..+..+++. ...++++++. +.-++.+++. ..+.+.....++ .+..|
T Consensus 19 al~~~~-~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~-Ga~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T d1rjwa2 19 ALKVTG-AKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKEL-GADLVVNPLKEDAAKFMKEKVGGVH 95 (168)
T ss_dssp HHHHHT-CCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHT-TCSEEECTTTSCHHHHHHHHHSSEE
T ss_pred HHHHhC-CCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhc-CcceecccccchhhhhcccccCCCc
Confidence 344556 888999999998854 444444554 4678999997 6666666654 222222211111 11224
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.++.... . . ..++...+.++|+|++++...
T Consensus 96 ~~v~~~~----~-~---~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 96 AAVVTAV----S-K---PAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp EEEESSC----C-H---HHHHHHHHHEEEEEEEEECCC
T ss_pred eEEeecC----C-H---HHHHHHHHHhccCCceEeccc
Confidence 3333221 1 2 458999999999999999653
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.85 E-value=0.033 Score=36.52 Aligned_cols=101 Identities=12% Similarity=-0.042 Sum_probs=61.7
Q ss_pred HHHHHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEE---cccCc-----c-CCC
Q 030025 11 KILEAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVG---GDMFQ-----S-VPN 79 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~---~d~~~-----~-~~~ 79 (184)
.+.+... .++..+||=+|||. |..+..+++.....+++++|. +.-++.+++..-..++. .|... . -+.
T Consensus 18 a~~~~a~-~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 18 AAVNTAK-VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp HHHTTTC-CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred HHHHhhC-CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCC
Confidence 3444445 88899999999984 566666666665568999998 77788887764333332 22110 0 112
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhC-CCCcEEEEEeee
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSI-PEGGKVIVVESV 120 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L-~pgG~l~i~~~~ 120 (184)
. |+++-... .. ..+......+ +++|++++.-..
T Consensus 97 G~d~vid~~g-----~~---~~~~~~~~~~~~~~G~~v~vG~~ 131 (174)
T d1p0fa2 97 GVDYAVECAG-----RI---ETMMNALQSTYCGSGVTVVLGLA 131 (174)
T ss_dssp CBSEEEECSC-----CH---HHHHHHHHTBCTTTCEEEECCCC
T ss_pred CCcEEEEcCC-----Cc---hHHHHHHHHHHHhcCceEEEEEe
Confidence 3 77765322 22 3455566655 556999986643
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.52 E-value=0.027 Score=33.20 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=47.2
Q ss_pred cCCCCCCeEEEec-CCcChHH--HHHHhhCCCCeEEEeec--hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhh
Q 030025 17 KGFEHIKQLVDVG-GSLGNTL--KAITSKYPHIKGINFDL--PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILH 90 (184)
Q Consensus 17 ~~~~~~~~ilDiG-~G~G~~~--~~l~~~~~~~~~~~~D~--~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~ 90 (184)
|++.+.++|.=|| ||+|..+ +.+.++ +..++|.|. +...+...+ .++.+..+...+..+..|+|+.+.++-
T Consensus 3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~~~~~~L~~-~Gi~v~~g~~~~~i~~~d~vV~S~AI~ 78 (96)
T d1p3da1 3 PEMRRVQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVVTQRLAQ-AGAKIYIGHAEEHIEGASVVVVSSAIK 78 (96)
T ss_dssp CCCTTCCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHHHHHHHH-TTCEEEESCCGGGGTTCSEEEECTTSC
T ss_pred ccchhCCEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhHHHH-CCCeEEECCccccCCCCCEEEECCCcC
Confidence 3467788999998 7788555 444444 679999996 333333332 467777766655555559998888764
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.36 E-value=0.079 Score=34.65 Aligned_cols=101 Identities=11% Similarity=-0.026 Sum_probs=62.2
Q ss_pred HHHHHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEE---cccCc------cCCC
Q 030025 11 KILEAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVG---GDMFQ------SVPN 79 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~---~d~~~------~~~~ 79 (184)
.+.+... .++..+|+=+||| .|..+..+++.....+++++|. ++-++.|++..-..++. .|... ..+.
T Consensus 20 Av~~~~~-~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~ 98 (176)
T d1d1ta2 20 AAVKTGK-VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGN 98 (176)
T ss_dssp HHHTTSC-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred HHHHhhC-CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccc
Confidence 3445555 8889999999998 4566677777766679999998 88888888763332321 11111 0123
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHh-hCCCCcEEEEEeee
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHK-SIPEGGKVIVVESV 120 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~-~L~pgG~l~i~~~~ 120 (184)
+ |+++-...- + ..+..... +.+++|++++.-..
T Consensus 99 G~d~vi~~~g~-----~---~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 99 NVGYTFEVIGH-----L---ETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp CCCEEEECSCC-----H---HHHHHHHTTSCTTTCEEEECSCC
T ss_pred cceEEEEeCCc-----h---HHHHHHHHHhhcCCeEEEEEEcc
Confidence 3 766653321 2 23444444 45666999986643
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.18 E-value=0.037 Score=36.09 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=61.7
Q ss_pred HHHHhcCCCCCCeEEEecC--CcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc---ccCcc-----CCCC
Q 030025 12 ILEAYKGFEHIKQLVDVGG--SLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG---DMFQS-----VPNG 80 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~--G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~---d~~~~-----~~~~ 80 (184)
+.+..+ +++..+||-.|+ |.|..+..+++.. .+++++++. ++-.+.+++..--.++.. |+.+. -+..
T Consensus 20 l~~~~~-~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g 97 (174)
T d1yb5a2 20 LIHSAC-VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKG 97 (174)
T ss_dssp HHTTSC-CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTC
T ss_pred HHHHhC-CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCC
Confidence 334444 788899999996 4778888888776 578888876 666667666532222211 11111 1233
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
|+|+.... . ..++...+.|+|+|+++...
T Consensus 98 ~d~v~d~~g------~---~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 98 IDIIIEMLA------N---VNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEEEEESCH------H---HHHHHHHHHEEEEEEEEECC
T ss_pred ceEEeeccc------H---HHHHHHHhccCCCCEEEEEe
Confidence 77776321 1 35888899999999999864
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.82 E-value=0.036 Score=40.86 Aligned_cols=36 Identities=8% Similarity=0.153 Sum_probs=27.7
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC-------CCCeEEEeech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY-------PHIKGINFDLP 54 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~-------~~~~~~~~D~~ 54 (184)
.++..+|+|+|+|+|.++..+++.. ...+++.++.+
T Consensus 77 ~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s 119 (365)
T d1zkda1 77 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEIN 119 (365)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCC
T ss_pred CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccc
Confidence 4456789999999999998887653 34568888873
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.64 E-value=0.1 Score=32.25 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=53.7
Q ss_pred eEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc-------CCCCCEEEechhhhcCC
Q 030025 24 QLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS-------VPNGDAILIKWILHDWS 93 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~~l~~~~ 93 (184)
+|+=+|+ |.++..+++.. .+..++.+|. ++.++.+++..++.++.+|..++ ..++|.+++.. +
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t-----~ 74 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT-----G 74 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC-----S
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC-----C
Confidence 4555555 67776666553 3578999998 77776655444788999999872 22337777631 3
Q ss_pred hHHHHHHHHHHHhhCCCCcEE
Q 030025 94 DEHCLKLLKNCHKSIPEGGKV 114 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l 114 (184)
+++.--+.....+.+.+.-.+
T Consensus 75 ~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 75 KEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp CHHHHHHHHHHHHHTTCCCEE
T ss_pred cHHHHHHHHHHHHHcCCceEE
Confidence 333334556666778887443
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=94.59 E-value=0.011 Score=41.35 Aligned_cols=79 Identities=10% Similarity=0.136 Sum_probs=53.1
Q ss_pred HHHHHHhcCCCCC--CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhh-------hCCCC--------CCceEEEc
Q 030025 10 QKILEAYKGFEHI--KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQ-------HSPEY--------PGVKHVGG 71 (184)
Q Consensus 10 ~~l~~~~~~~~~~--~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~-------~a~~~--------~~i~~~~~ 71 (184)
+.+.+++. +++. .+|||.=||.|.-+..++.. ++++++++. +.+.. ++... .+++++.+
T Consensus 76 ~~l~kA~g-l~~~~~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~ 152 (250)
T d2oyra1 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_dssp SHHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred hHHHHHhc-CCCCCCCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecC
Confidence 45666666 5544 48999999999999999988 478999996 43322 22211 36889999
Q ss_pred ccCcc---CCCC-CEEEechhhhc
Q 030025 72 DMFQS---VPNG-DAILIKWILHD 91 (184)
Q Consensus 72 d~~~~---~~~~-D~i~~~~~l~~ 91 (184)
|..+. .... |+|++--++.+
T Consensus 153 Ds~~~L~~~~~~~DvIYlDPMFp~ 176 (250)
T d2oyra1 153 SSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_dssp CHHHHSTTCSSCCSEEEECCCCCC
T ss_pred cHHHHHhccCCCCCEEEECCCCcc
Confidence 87652 2222 88887555543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.51 E-value=0.0074 Score=39.55 Aligned_cols=92 Identities=11% Similarity=0.163 Sum_probs=60.6
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--CCceEEEcccCc---cCCCCCEEEechhhhcCC
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--PGVKHVGGDMFQ---SVPNGDAILIKWILHDWS 93 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--~~i~~~~~d~~~---~~~~~D~i~~~~~l~~~~ 93 (184)
++.+|+=||+| .|..+...+... ...++.+|. +..++..++. .+++....+-.. ....+|+|+..-.+---.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~ 109 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR 109 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence 46899999999 577777777777 589999998 6666655443 445555444322 234559998754432212
Q ss_pred hHHHHHHHHHHHhhCCCCcEEE
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~ 115 (184)
.| .-+-++..+.+|||..++
T Consensus 110 aP--~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 110 AP--ILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp CC--CCBCHHHHTTSCTTCEEE
T ss_pred cC--eeecHHHHhhcCCCcEEE
Confidence 22 235677888999998754
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.03 E-value=0.17 Score=32.67 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=62.4
Q ss_pred HHHHHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccC-cc--------CCC
Q 030025 11 KILEAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMF-QS--------VPN 79 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~-~~--------~~~ 79 (184)
.+.+... .++..+||=.||| .|..+..+++.....+++.+|. +.-++.+++..--.++..+-. ++ -+.
T Consensus 19 al~~~~~-~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2fzwa2 19 AAVNTAK-LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDG 97 (176)
T ss_dssp HHHTTTC-CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred HHHHhhC-CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCC
Confidence 3444455 8899999999977 4566667777765568888887 666777766532233222111 11 123
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. |+|+-.. ..+ ..++.+...+++||.+++.-
T Consensus 98 g~D~vid~~-----G~~---~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 98 GVDYSFECI-----GNV---KVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp CBSEEEECS-----CCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CCcEeeecC-----CCH---HHHHHHHHhhcCCceeEEEE
Confidence 3 8877632 222 46888999999998876643
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=93.50 E-value=0.057 Score=38.33 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=44.9
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY 63 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~ 63 (184)
..+.+.++.... .++..|||.=||+|.++.+..+. +-+++|+|+ ++.++.++++
T Consensus 237 ~~L~~rlI~~~s--~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~R 291 (320)
T d1booa_ 237 AKLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFR 291 (320)
T ss_dssp THHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGG
T ss_pred hHHHHHhhhhcc--cCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHH
Confidence 467788888775 67899999999999999887776 579999999 8888887654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=93.48 E-value=0.15 Score=31.26 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=53.1
Q ss_pred CCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc-------CCCCCEEEechhhhcCChHHHHHHH
Q 030025 30 GSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS-------VPNGDAILIKWILHDWSDEHCLKLL 101 (184)
Q Consensus 30 ~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~~l~~~~~~~~~~~l 101 (184)
||.|..+..+++...+..++.+|. +...+..+ ..++.++.+|..++ ...++.+++.. ++++.--.+
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~-~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----~~d~~n~~~ 79 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVL-RSGANFVHGDPTRVSDLEKANVRGARAVIVNL-----ESDSETIHC 79 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHH-HTTCEEEESCTTSHHHHHHTTCTTCSEEEECC-----SSHHHHHHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHH-hcCccccccccCCHHHHHHhhhhcCcEEEEec-----cchhhhHHH
Confidence 577889999999887777888887 66555443 35789999999872 23346666522 223323344
Q ss_pred HHHHhhCCCCcEEEE
Q 030025 102 KNCHKSIPEGGKVIV 116 (184)
Q Consensus 102 ~~~~~~L~pgG~l~i 116 (184)
-...+.+.|..+++.
T Consensus 80 ~~~~r~~~~~~~iia 94 (129)
T d2fy8a1 80 ILGIRKIDESVRIIA 94 (129)
T ss_dssp HHHHHHHCSSSCEEE
T ss_pred HHHHHHHCCCceEEE
Confidence 455566788877666
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.42 E-value=0.53 Score=30.22 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=61.2
Q ss_pred HHHHHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc-ccCcc--------CCC
Q 030025 11 KILEAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG-DMFQS--------VPN 79 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~-d~~~~--------~~~ 79 (184)
.+.+... .++..+||=+|+|. |.....+++.....+++.+|. +.-++.+++..-...+.. +..+. .+.
T Consensus 19 al~~~~~-vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2jhfa2 19 SAVKVAK-VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNG 97 (176)
T ss_dssp HHHTTTC-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred HHHHhhC-CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcC
Confidence 3444555 88899999999864 456666666676779999998 777777766543333322 11111 122
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCC-cEEEEEe
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEG-GKVIVVE 118 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~i~~ 118 (184)
. |+++-..... ..++.+...++++ |.+++..
T Consensus 98 G~D~vid~~G~~--------~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 98 GVDFSFEVIGRL--------DTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp CBSEEEECSCCH--------HHHHHHHHHBCTTTCEEEECS
T ss_pred CCCEEEecCCch--------hHHHHHHHHHhcCCcceEEec
Confidence 3 8877644332 3467777788886 5555543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=92.79 E-value=0.66 Score=29.63 Aligned_cols=97 Identities=15% Similarity=0.092 Sum_probs=58.1
Q ss_pred HHHHHhcCCCCCCeEEEecCCcC-hHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc---------CCC
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLG-NTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS---------VPN 79 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G-~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~---------~~~ 79 (184)
.+.+... .++..+|+=+|+|.+ ..+..+++..-..+++.+|. +.-++.+++..--+++...-.+. -+.
T Consensus 19 a~~~~a~-~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~ 97 (175)
T d1cdoa2 19 AAVNTAK-VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNG 97 (175)
T ss_dssp HHHTTTC-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTS
T ss_pred HHHHhhC-CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccC
Confidence 3444445 888999999999874 55555566666678999998 77777777763223332111111 122
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCC-cEEEE
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEG-GKVIV 116 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~i 116 (184)
. |+++-... .. ..+..+...+++| |.+++
T Consensus 98 G~d~vid~~G-----~~---~~~~~a~~~~~~g~~~~~~ 128 (175)
T d1cdoa2 98 GVDFSLECVG-----NV---GVMRNALESCLKGWGVSVL 128 (175)
T ss_dssp CBSEEEECSC-----CH---HHHHHHHHTBCTTTCEEEE
T ss_pred CcceeeeecC-----CH---HHHHHHHHHhhCCCcceeE
Confidence 3 77755332 22 3567777776666 54444
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=92.33 E-value=0.13 Score=35.75 Aligned_cols=100 Identities=13% Similarity=0.085 Sum_probs=67.3
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC----CC------------------------------------CeEEEeec-hhHh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY----PH------------------------------------IKGINFDL-PHVI 57 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~----~~------------------------------------~~~~~~D~-~~~~ 57 (184)
+.+...++|--||+|.+....+-.. |+ ..+.+.|. +.++
T Consensus 48 w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai 127 (249)
T d1o9ga_ 48 GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAA 127 (249)
T ss_dssp CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHH
Confidence 6677889999999999998776532 11 23456666 5666
Q ss_pred hhCCC---C-------CCceEEEcccCc--cC-----CCC-CEEEechhhhc-CC------hHHHHHHHHHHHhhCCCCc
Q 030025 58 QHSPE---Y-------PGVKHVGGDMFQ--SV-----PNG-DAILIKWILHD-WS------DEHCLKLLKNCHKSIPEGG 112 (184)
Q Consensus 58 ~~a~~---~-------~~i~~~~~d~~~--~~-----~~~-D~i~~~~~l~~-~~------~~~~~~~l~~~~~~L~pgG 112 (184)
+.|+. + ..+++...|+++ +. +.. ++|+++=...+ +. .+....++..+++.++.-.
T Consensus 128 ~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s 207 (249)
T d1o9ga_ 128 QAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA 207 (249)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCc
Confidence 55531 1 458889999876 21 223 88998766555 32 2345578888999997777
Q ss_pred EEEEEe
Q 030025 113 KVIVVE 118 (184)
Q Consensus 113 ~l~i~~ 118 (184)
.+++++
T Consensus 208 ~~~it~ 213 (249)
T d1o9ga_ 208 VIAVTD 213 (249)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 777765
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=92.33 E-value=0.16 Score=29.30 Aligned_cols=67 Identities=10% Similarity=0.006 Sum_probs=41.0
Q ss_pred CeEEEec-CCcChHHHHHHhhCCCCeEEEeec--hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhh
Q 030025 23 KQLVDVG-GSLGNTLKAITSKYPHIKGINFDL--PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILH 90 (184)
Q Consensus 23 ~~ilDiG-~G~G~~~~~l~~~~~~~~~~~~D~--~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~ 90 (184)
.+|-=|| ||+|..+.+..-......++|.|. +.+.+..+ ..++.+..+.-.+.+.+.|+|+.+.++-
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~-~~Gi~i~~gh~~~~i~~~d~vV~SsAI~ 71 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLR-KLGIPIFVPHSADNWYDPDLVIKTPAVR 71 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHH-HTTCCEESSCCTTSCCCCSEEEECTTCC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHH-HCCCeEEeeecccccCCCCEEEEecCcC
Confidence 3455566 778866654444445789999997 34444322 2457666553333444559999888875
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=91.77 E-value=0.12 Score=35.42 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=42.9
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE 62 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~ 62 (184)
..+.+.+++.+. .++..|||.=||+|.++.+..+. +-+++|+|+ +..++.|++
T Consensus 199 ~~L~~~lI~~~s--~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~ 252 (256)
T d1g60a_ 199 RDLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANF 252 (256)
T ss_dssp HHHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred hhHHHHHHHHhC--CCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 467788888876 66789999999999999877766 468999999 787776653
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.67 E-value=0.22 Score=35.52 Aligned_cols=121 Identities=11% Similarity=0.083 Sum_probs=70.3
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCe-EEEeec-hhHhhhCCC-CCCceEEEcccCc-c---CC--CCCEEEechhhhcC
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIK-GINFDL-PHVIQHSPE-YPGVKHVGGDMFQ-S---VP--NGDAILIKWILHDW 92 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~-~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~---~~--~~D~i~~~~~l~~~ 92 (184)
+.+|+|+=||.|.++..+-...-+.+ +.++|. +.+++..+. +++..+...|+.+ . ++ +.|+++.......+
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~f 81 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeecccccc
Confidence 46899999999999888766632333 457787 666654443 4778888888875 2 22 23999876555444
Q ss_pred C--------hHHHHHHHHHHHhhC-----CCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 93 S--------DEHCLKLLKNCHKSI-----PEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 93 ~--------~~~~~~~l~~~~~~L-----~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
+ +++...++-++.+++ +|. +++.|....- .. ..+.+.+.+.
T Consensus 82 S~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk--~~i~ENV~~l-------------~~-----------~~~~~~i~~~ 135 (343)
T d1g55a_ 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGF-------------EV-----------SSTRDLLIQT 135 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCCS--EEEEEEETTG-------------GG-----------SHHHHHHHHH
T ss_pred cccccccccccccccccchhhhhHhhhcCCCc--eeeeeccCCc-------------cc-----------chhhHHHHhh
Confidence 2 222334555555543 465 6666644311 00 0124667888
Q ss_pred HHHcCCcee
Q 030025 160 ATEAGFSGI 168 (184)
Q Consensus 160 l~~aGf~~i 168 (184)
|++.|+...
T Consensus 136 l~~~GY~v~ 144 (343)
T d1g55a_ 136 IENCGFQYQ 144 (343)
T ss_dssp HHHTTEEEE
T ss_pred hhccccccc
Confidence 999998754
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=91.56 E-value=0.062 Score=34.96 Aligned_cols=93 Identities=11% Similarity=0.187 Sum_probs=58.3
Q ss_pred HHHHhcCCCCCCeEEEecC--CcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-----cCCCC-CE
Q 030025 12 ILEAYKGFEHIKQLVDVGG--SLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-----SVPNG-DA 82 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~--G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-----~~~~~-D~ 82 (184)
.++..+ +++..+||=.|+ |.|..+..+++.. ++++++++. +.-.+.+++. +.+... |..+ ..+.+ |+
T Consensus 19 al~~~~-~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~l-Ga~~~i-~~~~~~~~~~~~~g~D~ 94 (171)
T d1iz0a2 19 ALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL-GAEEAA-TYAEVPERAKAWGGLDL 94 (171)
T ss_dssp HHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT-TCSEEE-EGGGHHHHHHHTTSEEE
T ss_pred HHHHhC-CCCCCEEEEEeccccchhhhhhhhccc-cccccccccccccccccccc-ccceee-ehhhhhhhhhccccccc
Confidence 345555 889999999884 3567888888876 578888886 5555555443 222221 2222 12334 88
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
|+-. . .+ .++...+.|+|+|+++...
T Consensus 95 v~d~--~---G~-----~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 95 VLEV--R---GK-----EVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp EEEC--S---CT-----THHHHHTTEEEEEEEEEC-
T ss_pred cccc--c---ch-----hHHHHHHHHhcCCcEEEEe
Confidence 7652 1 21 2677889999999999864
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=91.35 E-value=0.22 Score=32.12 Aligned_cols=87 Identities=23% Similarity=0.299 Sum_probs=49.3
Q ss_pred CeEEEecCCcChH--HHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCce------EEEcccCccCCCCCEEEec
Q 030025 23 KQLVDVGGSLGNT--LKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVK------HVGGDMFQSVPNGDAILIK 86 (184)
Q Consensus 23 ~~ilDiG~G~G~~--~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~------~~~~d~~~~~~~~D~i~~~ 86 (184)
++|.=||+|.-.. +..|++. +..++.+|. +.-++..++. +... ....|..+..++.|+|++.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 5778889885433 3333332 568888887 5544443321 1111 1122222223445888774
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
- +......+++++...|+++-.+++
T Consensus 80 v-----~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 80 V-----PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp S-----CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred E-----chhHHHHHHHHhhhccCCCCEEEE
Confidence 3 223345789999999999886654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=91.28 E-value=0.096 Score=34.55 Aligned_cols=92 Identities=10% Similarity=0.104 Sum_probs=54.2
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-C-Cce--EE--------Ec-------ccCc----
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-P-GVK--HV--------GG-------DMFQ---- 75 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~-~i~--~~--------~~-------d~~~---- 75 (184)
++.+|+=||+| .|..+...+... .++++.+|. +..++..++. + .+. .. .+ ++..
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 46899999999 467777777776 679999997 6555555443 1 111 00 00 0000
Q ss_pred ----cCCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEE
Q 030025 76 ----SVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 76 ----~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~ 115 (184)
....+|+|+..-.+---..|. -+=++..+.+|||..++
T Consensus 107 ~l~~~l~~aDlVI~talipG~~aP~--lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 107 AVLKELVKTDIAITTALIPGKPAPV--LITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCC--CSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHhhhhheeeeecCCcccce--eehHHHHHhcCCCcEEE
Confidence 123458887755443322221 35677888999998755
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=91.24 E-value=0.83 Score=27.70 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=46.4
Q ss_pred CcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc-------CCCCCEEEechhhhcCChHHHHHH
Q 030025 31 SLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS-------VPNGDAILIKWILHDWSDEHCLKL 100 (184)
Q Consensus 31 G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~~l~~~~~~~~~~~ 100 (184)
|.|.++..+++.. .+..++.+|. ++.++.++.. ....+.+|..++ ..++|.+++... .+.+...+
T Consensus 7 G~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~-~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~----~~~~~~~~ 81 (134)
T d2hmva1 7 GLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-ATHAVIANATEENELLSLGIRNFEYVIVAIG----ANIQASTL 81 (134)
T ss_dssp CCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT-CSEEEECCTTCTTHHHHHTGGGCSEEEECCC----SCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh-CCcceeeecccchhhhccCCccccEEEEEcC----chHHhHHH
Confidence 5566666666553 3568899998 8888887654 356677888762 223476655322 22333334
Q ss_pred HHHHHhhCCCCcEEEE
Q 030025 101 LKNCHKSIPEGGKVIV 116 (184)
Q Consensus 101 l~~~~~~L~pgG~l~i 116 (184)
...+.+.+ |...++.
T Consensus 82 ~~~~~~~~-~~~~iia 96 (134)
T d2hmva1 82 TTLLLKEL-DIPNIWV 96 (134)
T ss_dssp HHHHHHHT-TCSEEEE
T ss_pred HHHHHHHc-CCCcEEe
Confidence 44444444 5556554
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=91.18 E-value=0.55 Score=30.37 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=62.3
Q ss_pred HHHHhcCCCCCCeEEEecCC--cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc--------CCCC
Q 030025 12 ILEAYKGFEHIKQLVDVGGS--LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS--------VPNG 80 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G--~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~--------~~~~ 80 (184)
+.+..+ +++..+||=.|++ .|..+..+++.. .+++++++. ++-.+.+++..--..+..+-.+. -+..
T Consensus 21 l~~~~~-v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~G 98 (182)
T d1v3va2 21 LLEVCG-VKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDG 98 (182)
T ss_dssp HHTTTC-CCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred HHHHhC-CCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCC
Confidence 334444 8889999988864 567888888876 579999886 66666666553333332222211 1223
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
|+|+-. ... +.++...++|+|+|++++.-.
T Consensus 99 vd~v~D~-----vG~----~~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 99 YDCYFDN-----VGG----EFLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp EEEEEES-----SCH----HHHHHHGGGEEEEEEEEECCC
T ss_pred CceeEEe-----cCc----hhhhhhhhhccCCCeEEeecc
Confidence 776542 232 358899999999999998653
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.17 E-value=0.3 Score=31.60 Aligned_cols=90 Identities=10% Similarity=0.045 Sum_probs=56.7
Q ss_pred CCCCCeEEEec--CCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc---cCcc-----CCCC-CEEEec
Q 030025 19 FEHIKQLVDVG--GSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD---MFQS-----VPNG-DAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG--~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d---~~~~-----~~~~-D~i~~~ 86 (184)
+++..+||=.| +|.|..+..+++.. +++++.++. ++-.+.+++..--..+... +.+. .+.. |+|+..
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~ 101 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNS 101 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEec
Confidence 77888999877 34678888888765 567777765 5556666665222222111 1111 1223 888763
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.. . +.++.+.++|+|+|+++...
T Consensus 102 ~g-----~----~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 102 LA-----G----EAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp CC-----T----HHHHHHHHTEEEEEEEEECS
T ss_pred cc-----c----hHHHHHHHHhcCCCEEEEEc
Confidence 32 2 34788889999999999864
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=91.05 E-value=0.91 Score=28.81 Aligned_cols=108 Identities=8% Similarity=0.035 Sum_probs=57.3
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh---CCCCeEEEeec--hhHhhhCCCCCCceEEEcccCc-cCCCCCEE
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK---YPHIKGINFDL--PHVIQHSPEYPGVKHVGGDMFQ-SVPNGDAI 83 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~---~~~~~~~~~D~--~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i 83 (184)
+...+.+. --...+||=||.| ..+..+++. ....+++...- +...+.+++.+ ......+-.. ...++|+|
T Consensus 13 ~la~~~~~-~l~~~~ilviGaG--~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~-~~~~~~~~~~~~l~~~Div 88 (159)
T d1gpja2 13 ELAERELG-SLHDKTVLVVGAG--EMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG-GEAVRFDELVDHLARSDVV 88 (159)
T ss_dssp HHHHHHHS-CCTTCEEEEESCC--HHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT-CEECCGGGHHHHHHTCSEE
T ss_pred HHHHHHhC-CcccCeEEEECCC--HHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhh-cccccchhHHHHhccCCEE
Confidence 33334444 3467899999875 444333332 12225666653 33444444332 3333332222 33445999
Q ss_pred Eechhhhc-CChHHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 84 LIKWILHD-WSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 84 ~~~~~l~~-~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
++...-.+ +=.. +.++...+.-+++..+++.|...|..
T Consensus 89 i~atss~~~ii~~---~~i~~~~~~r~~~~~~~iiDlavPr~ 127 (159)
T d1gpja2 89 VSATAAPHPVIHV---DDVREALRKRDRRSPILIIDIANPRD 127 (159)
T ss_dssp EECCSSSSCCBCH---HHHHHHHHHCSSCCCEEEEECCSSCS
T ss_pred EEecCCCCccccH---hhhHHHHHhcccCCCeEEEeecCCCC
Confidence 88665433 2222 34666666666677788889877654
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=90.56 E-value=0.21 Score=32.63 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=54.5
Q ss_pred CCCCCeEEEec--CCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccC---ccCCC-C-CEEEechhhh
Q 030025 19 FEHIKQLVDVG--GSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMF---QSVPN-G-DAILIKWILH 90 (184)
Q Consensus 19 ~~~~~~ilDiG--~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~---~~~~~-~-D~i~~~~~l~ 90 (184)
.++..+||=.| +|.|..+..+++.. +++++++.. ++-.+.+++..--.++..+-. +.... . |.++ .
T Consensus 29 ~~~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vv-----D 102 (177)
T d1o89a2 29 RPQDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAI-----D 102 (177)
T ss_dssp CGGGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEE-----E
T ss_pred CCCCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeE-----E
Confidence 44556888766 34667888888876 678888775 555555544311112221111 12222 2 6543 2
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.+.. ..+.+..+.|+|+|+++.....
T Consensus 103 ~Vgg----~~~~~~l~~l~~~Griv~~G~~ 128 (177)
T d1o89a2 103 TVGD----KVLAKVLAQMNYGGCVAACGLA 128 (177)
T ss_dssp SSCH----HHHHHHHHTEEEEEEEEECCCT
T ss_pred Ecch----HHHHHHHHHhccccceEeeccc
Confidence 2232 3588999999999999997644
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.82 E-value=0.23 Score=34.34 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=44.7
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY 63 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~ 63 (184)
...+...+++.+. .+...|||.=||+|.++.+..+. +-+++|+|+ +...+.|+++
T Consensus 193 P~~L~~~~I~~~s--~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~R 248 (279)
T d1eg2a_ 193 PAAVIERLVRALS--HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQ 248 (279)
T ss_dssp CHHHHHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHH
T ss_pred chhHHHHHHHhhc--CCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHH
Confidence 3457788888875 67889999999999999888877 469999999 8887777654
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.60 E-value=0.3 Score=31.80 Aligned_cols=101 Identities=11% Similarity=-0.023 Sum_probs=59.1
Q ss_pred HHHHhcCCCCCCeEEEecC--CcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEE--cccCc---c-CCCC-C
Q 030025 12 ILEAYKGFEHIKQLVDVGG--SLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVG--GDMFQ---S-VPNG-D 81 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~--G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~--~d~~~---~-~~~~-D 81 (184)
+.+.-. .++..+||=-|+ |.|..+..+++.. ++++++... +.-.+.+++..--..+. .+..+ . -+.. |
T Consensus 23 L~~~g~-~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD 100 (176)
T d1xa0a2 23 LEEHGL-TPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWA 100 (176)
T ss_dssp HHHTTC-CGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEE
T ss_pred HHHhCC-CCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcC
Confidence 444433 667788999884 5678888888886 667777765 55555555441111111 11111 1 1223 7
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
+|+=. + .. ..+.+..+.|+|||+++........
T Consensus 101 ~vid~-v----gg----~~~~~~l~~l~~~Griv~~G~~~g~ 133 (176)
T d1xa0a2 101 AAVDP-V----GG----RTLATVLSRMRYGGAVAVSGLTGGA 133 (176)
T ss_dssp EEEEC-S----TT----TTHHHHHHTEEEEEEEEECSCCSSS
T ss_pred EEEEc-C----Cc----hhHHHHHHHhCCCceEEEeecccCc
Confidence 65442 2 21 2488899999999999997765433
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=87.84 E-value=0.57 Score=30.06 Aligned_cols=92 Identities=8% Similarity=-0.012 Sum_probs=58.2
Q ss_pred CCCCCeEEEecCC--cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc---ccCcc---C--CCC-CEEEec
Q 030025 19 FEHIKQLVDVGGS--LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG---DMFQS---V--PNG-DAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG~G--~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~---d~~~~---~--~~~-D~i~~~ 86 (184)
+++..+||=.|+| .|..+..+++.. ++++++++. +.-.+.+++..--+.+.. |+.+. . +.. |+|+-.
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~ 104 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDS 104 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeC
Confidence 7888999999655 678888888875 579999987 666666665432222211 11111 1 223 765542
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.. . ..+....+.++|+|++++....
T Consensus 105 ~g-----~----~~~~~~~~~l~~~G~~v~~g~~ 129 (179)
T d1qora2 105 VG-----R----DTWERSLDCLQRRGLMVSFGNS 129 (179)
T ss_dssp SC-----G----GGHHHHHHTEEEEEEEEECCCT
T ss_pred cc-----H----HHHHHHHHHHhcCCeeeecccc
Confidence 22 1 2477889999999998875433
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=87.13 E-value=0.8 Score=32.42 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=38.3
Q ss_pred CeEEEecCCcChHHHHHHhhC---CCCeEEEeec-hhHhhhCCCCCCceEEEcccCc
Q 030025 23 KQLVDVGGSLGNTLKAITSKY---PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ 75 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~---~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~ 75 (184)
++||=.|+ +|.++..+++.+ ...+++++|. ..-.....+.++++++.+|+.+
T Consensus 1 MKILITG~-tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~ 56 (342)
T d2blla1 1 MRVLILGV-NGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISI 56 (342)
T ss_dssp CEEEEETC-SSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTT
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCC
Confidence 36777765 888887777653 3468999997 5555555667899999999875
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=85.92 E-value=1.1 Score=26.42 Aligned_cols=86 Identities=12% Similarity=-0.041 Sum_probs=47.7
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec---hhHhhhCCCCCCceEEEcccCc-cCCCCCEEEechhhhcCChHH
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL---PHVIQHSPEYPGVKHVGGDMFQ-SVPNGDAILIKWILHDWSDEH 96 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~---~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~~~l~~~~~~~ 96 (184)
..++||=||+|.-...+.-.-.-.+++++.++. ++....+ +..++.+....+.. .+...++++.... +++
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~-~~~~i~~~~~~~~~~dl~~~~lv~~at~-----d~~ 84 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWA-NEGMLTLVEGPFDETLLDSCWLAIAATD-----DDT 84 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHH-TTTSCEEEESSCCGGGGTTCSEEEECCS-----CHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHH-hcCCceeeccCCCHHHhCCCcEEeecCC-----CHH
Confidence 468999999986443332221112566666663 4444444 33678888777765 5555577776432 221
Q ss_pred HHHHHHHHHhhCCCCcEEE
Q 030025 97 CLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 97 ~~~~l~~~~~~L~pgG~l~ 115 (184)
+=.++.+..++-|.++
T Consensus 85 ---~n~~i~~~a~~~~ilV 100 (113)
T d1pjqa1 85 ---VNQRVSDAAESRRIFC 100 (113)
T ss_dssp ---HHHHHHHHHHHTTCEE
T ss_pred ---HHHHHHHHHHHcCCEE
Confidence 2234444445556654
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.85 E-value=1.9 Score=27.79 Aligned_cols=92 Identities=13% Similarity=0.140 Sum_probs=53.4
Q ss_pred CCCC--CeEEEec--CCcChHHHHHHhhCCCCeEEEeec-hh-HhhhCCCCCCceEEEc---ccCc----cCCCC-CEEE
Q 030025 19 FEHI--KQLVDVG--GSLGNTLKAITSKYPHIKGINFDL-PH-VIQHSPEYPGVKHVGG---DMFQ----SVPNG-DAIL 84 (184)
Q Consensus 19 ~~~~--~~ilDiG--~G~G~~~~~l~~~~~~~~~~~~D~-~~-~~~~a~~~~~i~~~~~---d~~~----~~~~~-D~i~ 84 (184)
+++. .+||=-| +|.|..+..+++.....++++++. ++ ..+.+++..--..+.. |+.+ .-+.+ |+|+
T Consensus 26 ~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~ 105 (187)
T d1vj1a2 26 ISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYF 105 (187)
T ss_dssp CCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred CCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEE
Confidence 5544 6798877 678999999999875556766654 33 3333332211111111 1111 01333 7775
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
= .... ..++...+.|+|+|+++..-.
T Consensus 106 D-----~vGg----~~~~~~~~~l~~~G~iv~~G~ 131 (187)
T d1vj1a2 106 D-----NVGG----DISNTVISQMNENSHIILCGQ 131 (187)
T ss_dssp E-----SSCH----HHHHHHHTTEEEEEEEEEC--
T ss_pred e-----cCCc----hhHHHHhhhccccccEEEecc
Confidence 3 2222 358899999999999998543
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=85.42 E-value=1.4 Score=27.32 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=48.0
Q ss_pred eEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhH-hhhCCC--CCCceEEEcccCcc--C-----CCCCEEEechhhh
Q 030025 24 QLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHV-IQHSPE--YPGVKHVGGDMFQS--V-----PNGDAILIKWILH 90 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~-~~~a~~--~~~i~~~~~d~~~~--~-----~~~D~i~~~~~l~ 90 (184)
+|+=+|+ |..+..+++.. .+..++.+|. ++. .+...+ ..++.++.+|..++ + ..+|.+++..
T Consensus 5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~--- 79 (153)
T d1id1a_ 5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS--- 79 (153)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS---
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcc---
Confidence 5555555 55666555542 3457777776 432 222222 25799999999872 2 2347776632
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
++++.-...-...+.+.|.-+++.
T Consensus 80 --~~d~~n~~~~~~~r~~~~~~~iia 103 (153)
T d1id1a_ 80 --DNDADNAFVVLSAKDMSSDVKTVL 103 (153)
T ss_dssp --SCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred --ccHHHHHHHHHHHHHhCCCCceEE
Confidence 223222334445556678877665
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=83.52 E-value=2.4 Score=26.46 Aligned_cols=97 Identities=15% Similarity=0.253 Sum_probs=50.9
Q ss_pred CCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhh-hCCC--------CCCceEEEcccCccCCCCCEEEechhhh
Q 030025 22 IKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQ-HSPE--------YPGVKHVGGDMFQSVPNGDAILIKWILH 90 (184)
Q Consensus 22 ~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~-~a~~--------~~~i~~~~~d~~~~~~~~D~i~~~~~l~ 90 (184)
..+|-=||+|. |.....++...+-.+++.+|. ++..+ .+.. ..+......+-.+...++|+|++.....
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~ 82 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT 82 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence 45788899873 333334444444568888886 43221 1111 1334444444333444558887755543
Q ss_pred cCCh------------HHHHHHHHHHHhhC---CCCcEEEEEe
Q 030025 91 DWSD------------EHCLKLLKNCHKSI---PEGGKVIVVE 118 (184)
Q Consensus 91 ~~~~------------~~~~~~l~~~~~~L---~pgG~l~i~~ 118 (184)
..+. .....+++++.+.+ .|++.+++..
T Consensus 83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 3221 12234566555544 4999888744
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=82.68 E-value=1 Score=33.19 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=33.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC--CCeEEEeec-hhHhhhC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP--HIKGINFDL-PHVIQHS 60 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~--~~~~~~~D~-~~~~~~a 60 (184)
+++...++|||+-.|.++..+++..+ ..++++++. +...+..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~L 254 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTL 254 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHH
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHH
Confidence 56778999999999999988887654 358999997 6655444
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=81.27 E-value=2.1 Score=29.72 Aligned_cols=95 Identities=18% Similarity=0.130 Sum_probs=57.8
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-c---CCCCCEEEechhhhcCC----
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-S---VPNGDAILIKWILHDWS---- 93 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~---~~~~D~i~~~~~l~~~~---- 93 (184)
.+|+|+=||.|.+..-+-+..-. .+.++|+ +.+.+..+.+-.-.++.+|+.+ . ++..|+++.......++
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~-~~~a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS~ag~ 79 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFR-IICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPCQSWSEGGS 79 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCE-EEEEEECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEECCCCTTTSSSSC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCE-EEEEEeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeecccccccccccc
Confidence 36999999999999888776322 3457887 6666544433234567788876 2 34349998755444431
Q ss_pred ----hHHHHHHHH---HHHhhCCCCcEEEEEeee
Q 030025 94 ----DEHCLKLLK---NCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 94 ----~~~~~~~l~---~~~~~L~pgG~l~i~~~~ 120 (184)
+++...++- ++.+.++|. +++.|..
T Consensus 80 ~~g~~d~r~~l~~~~~~~i~~~~Pk--~~~lENV 111 (324)
T d1dcta_ 80 LRGIDDPRGKLFYEYIRILKQKKPI--FFLAENV 111 (324)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHCCS--EEEEEEE
T ss_pred cccccccccchHHHHHHHHHhhCCc--eeecccc
Confidence 222223333 344557886 6666654
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=80.97 E-value=0.91 Score=25.81 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=36.2
Q ss_pred CCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-h--hHhhhCCCCCCceEEEcccCc-cCCCCCEEEechhh
Q 030025 22 IKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-P--HVIQHSPEYPGVKHVGGDMFQ-SVPNGDAILIKWIL 89 (184)
Q Consensus 22 ~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~--~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~~~l 89 (184)
.++|+=+|-| ||..+..++.+. +.++++.|. + ...+..+ ..+.+....... .+...|.|+.+-.+
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~-g~~v~~~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~vi~SPGi 74 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLAR-GVTPRVMDTRMTPPGLDKLP--EAVERHTGSLNDEWLMAADLIVASPGI 74 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHT-TCCCEEEESSSSCTTGGGSC--TTSCEEESBCCHHHHHHCSEEEECTTS
T ss_pred CCEEEEEeECHHHHHHHHHHHHC-CCEEEEeeCCcCchhHHHHh--hccceeecccchhhhccCCEEEECCCC
Confidence 5688999976 664444444443 578888885 2 2222222 345555444332 23333888776554
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=80.26 E-value=1 Score=28.19 Aligned_cols=90 Identities=10% Similarity=0.117 Sum_probs=47.1
Q ss_pred CeEEEecCCc-ChH-HHHHHhhCCCCeEEEeec-hhHhhhCCC-CCCceE----EEcccCccCCCCCEEEechhhhcCCh
Q 030025 23 KQLVDVGGSL-GNT-LKAITSKYPHIKGINFDL-PHVIQHSPE-YPGVKH----VGGDMFQSVPNGDAILIKWILHDWSD 94 (184)
Q Consensus 23 ~~ilDiG~G~-G~~-~~~l~~~~~~~~~~~~D~-~~~~~~a~~-~~~i~~----~~~d~~~~~~~~D~i~~~~~l~~~~~ 94 (184)
++|+=||+|. |.. +..|++. ...++.++. +.-....+. ..+... ...+.....+..|+|++.---+
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~---- 74 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW---- 74 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG----
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeeccc----
Confidence 4788899874 433 3333333 457788875 321111110 011111 1111111223349888744433
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 95 EHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 95 ~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
....+++.+.+.++|+..++....
T Consensus 75 -~~~~~~~~l~~~~~~~~~Iv~~qN 98 (167)
T d1ks9a2 75 -QVSDAVKSLASTLPVTTPILLIHN 98 (167)
T ss_dssp -GHHHHHHHHHTTSCTTSCEEEECS
T ss_pred -chHHHHHhhccccCcccEEeeccC
Confidence 234689999999999988877543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=80.10 E-value=0.66 Score=30.28 Aligned_cols=149 Identities=11% Similarity=0.005 Sum_probs=75.6
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----------CC---------c-eEEEcccCccCC
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----------PG---------V-KHVGGDMFQSVP 78 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------~~---------i-~~~~~d~~~~~~ 78 (184)
..++|.=||+|+=....++.-...+.+++.+|. ++.++.+.++ .. . .+...+..+.+.
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFG 82 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGG
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccc
Confidence 356788898874322222222224678999998 6666554331 00 0 111122222333
Q ss_pred CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhh-----------hhCCC
Q 030025 79 NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVM-----------TQYPG 147 (184)
Q Consensus 79 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 147 (184)
+.|+|+- .+.+.+ +...++|+++-+.++|+-.|.-.....+-..-......-......+++ .....
T Consensus 83 ~adlViE-av~E~l--~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~ 159 (186)
T d1wdka3 83 NVDLVVE-AVVENP--KVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEK 159 (186)
T ss_dssp GCSEEEE-CCCSCH--HHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSS
T ss_pred ccceeee-eecchH--HHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCC
Confidence 4487775 555543 344589999999999997766644333211000000000011111110 00111
Q ss_pred ccccCHHHHHHHHHHcCCceeEEEe
Q 030025 148 GKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 148 ~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
....+.+...++++..|...+.+..
T Consensus 160 T~~~~~~~~~~~~~~lgk~pv~v~d 184 (186)
T d1wdka3 160 SSDLAVATTVAYAKKMGKNPIVVND 184 (186)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEec
Confidence 2233667788889999988886653
|