Citrus Sinensis ID: 030037

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
MSSPSKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENIVNSTADEESGDEEISEEESESSDDDIAGHADP
cccccHHHHHHHHHHccccccEEEccccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEEccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccccccHHccccccccccccccc
cccHHHHHHHHHHcccccccccEEEccEEEEEEEEEEccccccccccEEEEEEEccccccccccEEEEcccccEccEcccccEEccHHHcccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccccccHHHccccccccccHHHcccccc
msspskrrdMDVMKLMMSDYNVETINdglnefnvefhgpkeslyegGVWKIRVelpdaypykspsigfvnkiyhpnvdemsgSVCLDVINQSWSPMFDLLNIFESFlpqlllypnpsdplngdaASLMMKDRKQYDQKVKEYCERYAKKEnivnstadeesgdeeiseeesessdddiaghadp
msspskrrdmdVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERyakkenivnstadeesgdeeiseeesessdddiaghadp
MSSPSKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENIVNSTadeesgdeeiseeesessdddiagHADP
**************LMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYP***************************YC*****************************************
****SKR***DVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY**************************************
*********MDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENIVN******************************
*********MDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKK***********************************
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MSSPSKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENIVNSTADEESGDEEISEEESESSDDDIAGHADP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query184 2.2.26 [Sep-21-2011]
P42749185 Ubiquitin-conjugating enz yes no 0.978 0.972 0.730 2e-77
P16577184 Ubiquitin-conjugating enz N/A no 1.0 1.0 0.744 2e-74
P42748187 Ubiquitin-conjugating enz no no 0.804 0.791 0.831 1e-73
P42750183 Ubiquitin-conjugating enz no no 0.994 1.0 0.701 1e-70
Q9P7R4184 Ubiquitin-conjugating enz yes no 0.983 0.983 0.601 3e-59
P62257183 Ubiquitin-conjugating enz yes no 0.820 0.825 0.632 2e-54
P62256183 Ubiquitin-conjugating enz yes no 0.820 0.825 0.632 2e-54
Q32LN1183 Ubiquitin-conjugating enz yes no 0.820 0.825 0.632 2e-54
P28263218 Ubiquitin-conjugating enz yes no 0.815 0.688 0.613 8e-53
P52490153 Ubiquitin-conjugating enz no no 0.804 0.967 0.372 4e-23
>sp|P42749|UBC5_ARATH Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2 Back     alignment and function desciption
 Score =  287 bits (735), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 138/189 (73%), Positives = 160/189 (84%), Gaps = 9/189 (4%)

Query: 1   MSSPSKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYP 60
           MSSPSKRR+MD+MKLMMSDY VE INDG+ EF VEF GPK+S+YEGGVWKIRVELPDAYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYP 60

Query: 61  YKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPL 120
           YKSPS+GF+ KIYHPNVDEMSGSVCLDVINQ+WSPMFDL+N+FE+FLPQLLLYPNPSDPL
Sbjct: 61  YKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPL 120

Query: 121 NGDAASLMMKDRKQYDQKVKEYCERYAKKENIVNSTADEESGDEEISEEESESSDDD--- 177
           NG+AA+LMM+DR  Y+Q+VKEYCE+YAK      +  +E S D+E+SE+E  S  DD   
Sbjct: 121 NGEAAALMMRDRPTYEQRVKEYCEKYAKP----RADTEEMSSDDEMSEDEYASDGDDEDD 176

Query: 178 --IAGHADP 184
             IAG  DP
Sbjct: 177 VAIAGKLDP 185
Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9
>sp|P16577|UBC4_WHEAT Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1 Back     alignment and function description
>sp|P42748|UBC4_ARATH Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2 Back     alignment and function description
>sp|P42750|UBC6_ARATH Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2 Back     alignment and function description
>sp|Q9P7R4|UBC8_SCHPO Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc8 PE=3 SV=1 Back     alignment and function description
>sp|P62257|UBE2H_MOUSE Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1 Back     alignment and function description
>sp|P62256|UBE2H_HUMAN Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1 Back     alignment and function description
>sp|Q32LN1|UBE2H_BOVIN Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1 Back     alignment and function description
>sp|P28263|UBC8_YEAST Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC8 PE=1 SV=2 Back     alignment and function description
>sp|P52490|UBC13_YEAST Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC13 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query184
224133484186 predicted protein [Populus trichocarpa] 1.0 0.989 0.865 5e-90
359491601184 PREDICTED: ubiquitin-conjugating enzyme 1.0 1.0 0.858 2e-89
388513067185 unknown [Medicago truncatula] 0.994 0.989 0.875 2e-89
255540741184 ubiquitin-conjugating enzyme h, putative 1.0 1.0 0.875 1e-86
388512179186 unknown [Lotus japonicus] 1.0 0.989 0.865 9e-85
357477321185 Ubiquitin carrier protein [Medicago trun 0.994 0.989 0.880 1e-84
351724367185 uncharacterized protein LOC100527526 [Gl 1.0 0.994 0.891 2e-84
356562755184 PREDICTED: ubiquitin-conjugating enzyme 1.0 1.0 0.891 3e-84
449440694188 PREDICTED: ubiquitin-conjugating enzyme 1.0 0.978 0.835 9e-82
302761246182 ubiquitin-conjugating enzyme 5, E2 [Sela 0.989 1.0 0.755 5e-81
>gi|224133484|ref|XP_002321579.1| predicted protein [Populus trichocarpa] gi|118487761|gb|ABK95704.1| unknown [Populus trichocarpa] gi|222868575|gb|EEF05706.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  335 bits (859), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 161/186 (86%), Positives = 177/186 (95%), Gaps = 2/186 (1%)

Query: 1   MSSPSKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYP 60
           MSSPSKRR+MDVMKLMMSDYNVETINDGLN+FNVEFHGPKESLYEGGVWKI VELPDAYP
Sbjct: 1   MSSPSKRREMDVMKLMMSDYNVETINDGLNDFNVEFHGPKESLYEGGVWKIHVELPDAYP 60

Query: 61  YKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPL 120
           YKSPSIGFVNKI+HPNVDE+SGSVCLDVINQSWSPMFDLLN+FE FLPQLL+YPNPSDPL
Sbjct: 61  YKSPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLIYPNPSDPL 120

Query: 121 NGDAASLMMKDRKQYDQKVKEYCERYAKKENIVNSTADEESGDEEISEEESESSD--DDI 178
           NGDAASLMMKD++QYDQKVKEYCERYAKKE+I+NST +E S +E++S+EES SSD  D+I
Sbjct: 121 NGDAASLMMKDKEQYDQKVKEYCERYAKKEHIMNSTGEELSDEEDVSDEESGSSDEEDEI 180

Query: 179 AGHADP 184
           AGH DP
Sbjct: 181 AGHVDP 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359491601|ref|XP_002280126.2| PREDICTED: ubiquitin-conjugating enzyme E2 5-like isoform 1 [Vitis vinifera] gi|359491603|ref|XP_003634294.1| PREDICTED: ubiquitin-conjugating enzyme E2 5-like isoform 2 [Vitis vinifera] gi|297733817|emb|CBI15064.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388513067|gb|AFK44595.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255540741|ref|XP_002511435.1| ubiquitin-conjugating enzyme h, putative [Ricinus communis] gi|223550550|gb|EEF52037.1| ubiquitin-conjugating enzyme h, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388512179|gb|AFK44151.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357477321|ref|XP_003608946.1| Ubiquitin carrier protein [Medicago truncatula] gi|355510001|gb|AES91143.1| Ubiquitin carrier protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|351724367|ref|NP_001237311.1| uncharacterized protein LOC100527526 [Glycine max] gi|255632544|gb|ACU16622.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356562755|ref|XP_003549634.1| PREDICTED: ubiquitin-conjugating enzyme E2 5-like isoform 1 [Glycine max] gi|356562757|ref|XP_003549635.1| PREDICTED: ubiquitin-conjugating enzyme E2 5-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|449440694|ref|XP_004138119.1| PREDICTED: ubiquitin-conjugating enzyme E2 5-like [Cucumis sativus] gi|449518947|ref|XP_004166497.1| PREDICTED: ubiquitin-conjugating enzyme E2 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|302761246|ref|XP_002964045.1| ubiquitin-conjugating enzyme 5, E2 [Selaginella moellendorffii] gi|302787402|ref|XP_002975471.1| ubiquitin-conjugating enzyme 5, E2 [Selaginella moellendorffii] gi|300157045|gb|EFJ23672.1| ubiquitin-conjugating enzyme 5, E2 [Selaginella moellendorffii] gi|300167774|gb|EFJ34378.1| ubiquitin-conjugating enzyme 5, E2 [Selaginella moellendorffii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query184
TAIR|locus:2177871187 UBC4 "AT5G41340" [Arabidopsis 0.804 0.791 0.831 6.3e-69
TAIR|locus:2026644185 UBC5 "AT1G63800" [Arabidopsis 0.804 0.8 0.831 2.1e-68
TAIR|locus:2062979183 UBC6 "AT2G46030" [Arabidopsis 0.836 0.841 0.772 2.2e-66
POMBASE|SPBC211.07c184 ubc8 "ubiquitin conjugating en 0.820 0.820 0.655 3.7e-55
DICTYBASE|DDB_G0280091185 DDB_G0280091 "ubiquitin--prote 0.831 0.827 0.675 1.3e-54
CGD|CAL0002753190 UBC8 [Candida albicans (taxid: 0.804 0.778 0.675 6.3e-53
UNIPROTKB|Q32LN1183 UBE2H "Ubiquitin-conjugating e 0.809 0.814 0.653 2.4e-51
UNIPROTKB|E2RJH3183 UBE2H "Uncharacterized protein 0.809 0.814 0.653 2.4e-51
UNIPROTKB|P62256183 UBE2H "Ubiquitin-conjugating e 0.809 0.814 0.653 2.4e-51
MGI|MGI:104632183 Ube2h "ubiquitin-conjugating e 0.809 0.814 0.653 2.4e-51
TAIR|locus:2177871 UBC4 "AT5G41340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 123/148 (83%), Positives = 142/148 (95%)

Query:     1 MSSPSKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYP 60
             MSSPSKRR+MD+MKLMMSDY VETINDG+ EF VEF+GPK+SLY+GGVWKIRVELPDAYP
Sbjct:     1 MSSPSKRREMDMMKLMMSDYKVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYP 60

Query:    61 YKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPL 120
             YKSPS+GF+ KIYHPNVDE+SGSVCLDVINQ+WSPMFDL+N+FE+FLPQLLLYPNPSDPL
Sbjct:    61 YKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPL 120

Query:   121 NGDAASLMMKDRKQYDQKVKEYCERYAK 148
             NG+AA+LMM+DR  Y+Q+VKEYCE+YAK
Sbjct:   121 NGEAAALMMRDRPAYEQRVKEYCEKYAK 148
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA
GO:0005634 "nucleus" evidence=ISM
GO:0016881 "acid-amino acid ligase activity" evidence=IEA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA;TAS
GO:0005829 "cytosol" evidence=RCA
GO:0006301 "postreplication repair" evidence=RCA
GO:0009408 "response to heat" evidence=IDA
TAIR|locus:2026644 UBC5 "AT1G63800" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062979 UBC6 "AT2G46030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC211.07c ubc8 "ubiquitin conjugating enzyme Ubc8 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0280091 DDB_G0280091 "ubiquitin--protein ligase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0002753 UBC8 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q32LN1 UBE2H "Ubiquitin-conjugating enzyme E2 H" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RJH3 UBE2H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62256 UBE2H "Ubiquitin-conjugating enzyme E2 H" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:104632 Ube2h "ubiquitin-conjugating enzyme E2H" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P42750UBC6_ARATH6, ., 3, ., 2, ., 1, 90.70100.99451.0nono
P42749UBC5_ARATH6, ., 3, ., 2, ., 1, 90.73010.97820.9729yesno
P16577UBC4_WHEAT6, ., 3, ., 2, ., 1, 90.74451.01.0N/Ano
Q32LN1UBE2H_BOVIN6, ., 3, ., 2, ., 1, 90.63220.82060.8251yesno
P62257UBE2H_MOUSE6, ., 3, ., 2, ., 1, 90.63220.82060.8251yesno
P62256UBE2H_HUMAN6, ., 3, ., 2, ., 1, 90.63220.82060.8251yesno
Q9P7R4UBC8_SCHPO6, ., 3, ., 2, ., 1, 90.60100.98360.9836yesno
P28263UBC8_YEAST6, ., 3, ., 2, ., 1, 90.61330.81520.6880yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2.190.979
3rd Layer6.3.20.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_kg.C_LG_XV0008
RecName- Full=Ubiquitin carrier protein; EC=6.3.2.-; (186 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query184
pfam00179139 pfam00179, UQ_con, Ubiquitin-conjugating enzyme 6e-52
COG5078153 COG5078, COG5078, Ubiquitin-protein ligase [Posttr 9e-51
cd00195141 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca 3e-50
smart00212145 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, 6e-46
PLN00172147 PLN00172, PLN00172, ubiquitin conjugating enzyme; 4e-26
PTZ00390152 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; 5e-23
>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme Back     alignment and domain information 
 Score =  162 bits (413), Expect = 6e-52
 Identities = 55/135 (40%), Positives = 86/135 (63%), Gaps = 3/135 (2%)

Query: 10  MDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFV 69
            +++K      +   ++D L E+ V   GP+ + YEGGV+K+ +E P+ YP+K P + F 
Sbjct: 7   KELLKDPPPGISAFPVDDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKPPKVKFT 66

Query: 70  NKIYHPNVDEMSGSVCLDVIN-QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLM 128
            KIYHPNVD  SG +CLD++  ++WSP   +  +  S +  LL  PNP DPLN +AA L 
Sbjct: 67  TKIYHPNVDP-SGEICLDILKDENWSPALTIEQVLLS-IQSLLSEPNPEDPLNAEAAKLY 124

Query: 129 MKDRKQYDQKVKEYC 143
            K+R+++++KV+EY 
Sbjct: 125 RKNREEFEKKVREYV 139

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139
>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain Back     alignment and domain information
>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues Back     alignment and domain information
>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional Back     alignment and domain information
>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 184
KOG0417148 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
COG5078153 Ubiquitin-protein ligase [Posttranslational modifi 100.0
PTZ00390152 ubiquitin-conjugating enzyme; Provisional 100.0
KOG0419152 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
PLN00172147 ubiquitin conjugating enzyme; Provisional 100.0
KOG0416189 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
KOG0418200 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
KOG0425171 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
KOG0424158 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
PF00179140 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP 100.0
KOG0421175 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
cd00195141 UBCc Ubiquitin-conjugating enzyme E2, catalytic (U 100.0
smart00212145 UBCc Ubiquitin-conjugating enzyme E2, catalytic do 100.0
KOG0426165 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
KOG0422153 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
KOG0420184 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
KOG0423223 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
KOG0427161 consensus Ubiquitin conjugating enzyme [Posttransl 99.95
KOG0894244 consensus Ubiquitin-protein ligase [Posttranslatio 99.94
KOG0429258 consensus Ubiquitin-conjugating enzyme-related pro 99.89
KOG0428 314 consensus Non-canonical ubiquitin conjugating enzy 99.83
KOG08951101 consensus Ubiquitin-conjugating enzyme [Posttransl 99.65
KOG0896138 consensus Ubiquitin-conjugating enzyme E2 [Posttra 99.51
KOG0895 1101 consensus Ubiquitin-conjugating enzyme [Posttransl 99.5
KOG0897122 consensus Predicted ubiquitin-conjugating enzyme [ 98.41
PF14461133 Prok-E2_B: Prokaryotic E2 family B 98.34
PF05743121 UEV: UEV domain; InterPro: IPR008883 The N-termina 97.99
KOG2391 365 consensus Vacuolar sorting protein/ubiquitin recep 97.22
PF08694161 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1 96.93
PF14462122 Prok-E2_E: Prokaryotic E2 family E 96.2
PF05773113 RWD: RWD domain; InterPro: IPR006575 The RWD eukar 95.3
KOG3357167 consensus Uncharacterized conserved protein [Funct 94.39
smart00591107 RWD domain in RING finger and WD repeat containing 93.97
PF14457162 Prok-E2_A: Prokaryotic E2 family A 93.2
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 88.57
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-51  Score=308.00  Aligned_cols=144  Identities=36%  Similarity=0.737  Sum_probs=139.3

Q ss_pred             hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 030037            4 PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM   80 (184)
Q Consensus         4 ~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~   80 (184)
                      +.+||.||++++   +++|+++.+.++|+++|+++|.||.+||||||+|.+.|.||++||++||+|+|.|+||||||+ .
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~-~   80 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID-S   80 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC-c
Confidence            357999999877   788999999999999999999999999999999999999999999999999999999999999 6


Q ss_pred             CCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcc
Q 030037           81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKK  149 (184)
Q Consensus        81 ~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~  149 (184)
                      +|+||+++|+.+|+|+++|.+||++ |++||.+||+++|++.+++.+|+.|+.+|.++||+||++||+.
T Consensus        81 ~G~IclDILk~~WsPAl~i~~Vlls-I~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~  148 (148)
T KOG0417|consen   81 NGRICLDILKDQWSPALTISKVLLS-ICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG  148 (148)
T ss_pred             cccchHHhhhccCChhhHHHHHHHH-HHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999 9999999999999999999999999999999999999999974

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00390 ubiquitin-conjugating enzyme; Provisional Back     alignment and domain information
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN00172 ubiquitin conjugating enzyme; Provisional Back     alignment and domain information
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ] Back     alignment and domain information
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain Back     alignment and domain information
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues Back     alignment and domain information
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14461 Prok-E2_B: Prokaryotic E2 family B Back     alignment and domain information
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub) Back     alignment and domain information
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes Back     alignment and domain information
>PF14462 Prok-E2_E: Prokaryotic E2 family E Back     alignment and domain information
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO) Back     alignment and domain information
>KOG3357 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain Back     alignment and domain information
>PF14457 Prok-E2_A: Prokaryotic E2 family A Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query184
2z5d_A179 Human Ubiquitin-Conjugating Enzyme E2 H Length = 17 5e-55
2onu_A152 Plasmodium Falciparum Ubiquitin Conjugating Enzyme 2e-52
1yf9_A171 Structural Analysis Of Leishmania Major Ubiquitin C 5e-43
1jbb_A153 Ubiquitin Conjugating Enzyme, Ubc13 Length = 153 4e-24
1jat_A155 Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng 8e-24
2gmi_A152 Mms2UBC13~UBIQUITIN Length = 152 5e-23
2c4p_A165 Crystal Structure Of Human Ubiquitin-Conjugating En 6e-23
2yho_B149 The Idol-Ube2d Complex Mediates Sterol-Dependent De 7e-23
3oj4_A153 Crystal Structure Of The A20 Znf4, Ubiquitin And Ub 7e-23
1z2u_A150 The 1.1a Crystallographic Structure Of Ubiquitin- C 9e-23
1q34_A163 Crystal Structures Of Two Ubc (E2) Enzymes Of The U 2e-22
1z3d_A157 Protein Crystal Growth Improvement Leading To The 2 2e-22
4fh1_A153 S. Cerevisiae Ubc13-N79a Length = 153 3e-22
2ayv_A166 Crystal Structure Of A Putative Ubiquitin-Conjugati 3e-22
2oxq_A152 Structure Of The Ubch5 :chip U-Box Complex Length = 4e-22
3l1y_A157 Crystal Structure Of Human Ubc4 E2 Conjugating Enzy 7e-22
4gpr_A151 Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin 8e-22
2c4o_B165 Crystal Structure Of Human Ubiquitin-Conjugating En 9e-22
2esk_A149 Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil 1e-21
1ur6_A147 Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp 1e-21
3tgd_A152 Crystal Structure Of The Human Ubiquitin-Conjugatin 1e-21
3eb6_B149 Structure Of The Ciap2 Ring Domain Bound To Ubch5b 1e-21
2eso_A149 Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta 2e-21
4ap4_B153 Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le 2e-21
2esp_A149 Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta 2e-21
1jas_A152 Hsubc2b Length = 152 2e-21
3l1z_A157 Crystal Structure Of The U-Box Domain Of Human E4b 3e-21
2fuh_A146 Solution Structure Of The Ubch5cUB NON-Covalent Com 3e-21
3rpg_A149 Bmi1RING1B-Ubch5c Complex Structure Length = 149 3e-21
2esq_A149 Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta 3e-21
1x23_A155 Crystal Structure Of Ubch5c Length = 155 3e-21
4ii2_C163 Crystal Structure Of Ubiquitin Activating Enzyme 1 3e-21
1ayz_A169 Crystal Structure Of The Saccharomyces Cerevisiae U 8e-21
1qcq_A148 Ubiquitin Conjugating Enzyme Length = 148 1e-20
2aak_A152 Ubiquitin Conjugating Enzyme From Arabidopsis Thali 1e-20
3a33_A150 Ubch5b~ubiquitin Conjugate Length = 150 2e-20
2c4o_A165 Crystal Structure Of Human Ubiquitin-Conjugating En 2e-20
3jvz_A146 E2~ubiquitin-Hect Length = 146 2e-20
3hct_B155 Crystal Structure Of Traf6 In Complex With Ubc13 In 3e-20
2c2v_B154 Crystal Structure Of The Chip-Ubc13-Uev1a Complex L 3e-20
1j7d_B152 Crystal Structure Of Hmms2-Hubc13 Length = 152 3e-20
4ddg_A 399 Crystal Structure Of Human Otub1UBCH5B~UBUB Length 4e-20
3von_C148 Crystalstructure Of The Ubiquitin Protease Length = 4e-20
4epo_B155 Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE 4e-20
3ugb_A147 Ubch5c~ubiquitin Conjugate Length = 147 5e-20
4auq_A147 Structure Of Birc7-Ubch5b-Ub Complex. Length = 147 1e-19
1fxt_A149 Structure Of A Conjugating Enzyme-Ubiquitin Thioles 1e-19
1tte_A215 The Structure Of A Class Ii Ubiquitin-Conjugating E 2e-19
2e2c_A156 E2-C, An Ubiquitin Conjugating Enzyme Required For 3e-19
3bzh_A194 Crystal Structure Of Human Ubiquitin-Conjugating En 5e-19
3e95_A151 Crystal Structure Of The Plasmodium Falciparum Ubiq 6e-19
2r0j_A149 Crystal Structure Of The Putative Ubiquitin Conjuga 6e-19
1y6l_A149 Human Ubiquitin Conjugating Enzyme E2e2 Length = 14 1e-18
2f4z_A193 Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw 2e-18
1yh2_A169 Ubiquitin-Conjugating Enzyme Hspc150 Length = 169 5e-17
2pwq_A216 Crystal Structure Of A Putative Ubiquitin Conjugati 1e-16
1i7k_A179 Crystal Structure Of Human Mitotic-Specific Ubiquit 1e-16
3sqv_C156 Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L 1e-16
1c4z_D154 Structure Of E6ap: Insights Into Ubiquitination Pat 1e-16
3o2u_A190 S. Cerevisiae Ubc12 Length = 190 2e-16
1yla_A202 Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington 3e-16
2bep_A159 Crystal Structure Of Ubiquitin Conjugating Enzyme E 3e-16
3k9o_A201 The Crystal Structure Of E2-25k And Ubb+1 Complex L 3e-16
3k9p_A217 The Crystal Structure Of E2-25k And Ubiquitin Compl 4e-16
3e46_A253 Crystal Structure Of Ubiquitin-Conjugating Enzyme E 4e-16
1y8x_A160 Structural Basis For Recruitment Of Ubc12 By An E2- 2e-14
3fn1_B167 E2-Ring Expansion Of The Nedd8 Cascade Confers Spec 6e-14
2edi_A173 Solution Structure Of The Uq_con Domain From Human 1e-13
1pzv_A164 Crystal Structures Of Two Ubc (E2) Enzymes Of The U 1e-13
1zdn_A158 Ubiquitin-Conjugating Enzyme E2s Length = 158 2e-13
2nvu_C180 Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1 3e-13
3rz3_A183 Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len 3e-13
1wzv_A155 Crystal Structure Of Ubch8 Length = 155 3e-13
2kjh_A152 Nmr Based Structural Model Of The Ubch8-Ubiquitin C 3e-13
3ong_B159 Crystal Structure Of Uba2ufd-ubc9: Insights Into E1 5e-13
2gjd_A157 Distinct Functional Domains Of Ubc9 Dictate Cell Su 6e-13
2ob4_A180 Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1 7e-13
2awf_A172 Structure Of Human Ubiquitin-Conjugating Enzyme E2 1e-12
2grp_A161 Crystal Structure Of Human Rangap1-Ubc9-Y87a Length 5e-12
3rcz_B163 Rad60 Sld2 Ubc9 Complex Length = 163 7e-12
1z5s_A158 Crystal Structure Of A Complex Between Ubc9, Sumo-1 1e-11
1kps_A159 Structural Basis For E2-Mediated Sumo Conjugation R 1e-11
1u9a_A160 Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16 1e-11
2grn_A161 Crystal Structure Of Human Rangap1-Ubc9 Length = 16 1e-11
3a4s_A163 The Crystal Structure Of The Sld2:ubc9 Complex Leng 1e-11
2o25_C160 Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi 1e-11
2y9p_A172 Pex4p-Pex22p Mutant Ii Structure Length = 172 1e-11
2y9o_A172 Pex4p-Pex22p Mutant I Structure Length = 172 2e-11
2y9m_A172 Pex4p-Pex22p Structure Length = 172 2e-11
2gro_A161 Crystal Structure Of Human Rangap1-Ubc9-N85q Length 4e-11
2grr_A161 Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt 5e-11
2grq_A161 Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt 6e-11
1yrv_A169 Novel Ubiquitin-Conjugating Enzyme Length = 169 1e-10
2uyz_A158 Non-Covalent Complex Between Ubc9 And Sumo1 Length 2e-10
3uio_A158 Complex Between Human Rangap1-Sumo2, Ubc9 And The I 2e-10
2ucz_A165 Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy 2e-08
3fsh_A168 Crystal Structure Of The Ubiquitin Conjugating Enzy 4e-08
3h8k_A164 Crystal Structure Of Ube2g2 Complxed With The G2br 4e-08
2kly_A167 Solution Structure Of Human Ubiquitin Conjugating E 5e-08
2cyx_A170 Structure Of Human Ubiquitin-Conjugating Enzyme E2 5e-08
2a7l_A136 Structure Of The Human Hypothetical Ubiquitin-Conju 1e-06
2h2y_A136 Crystal Structure Of Ubiquitin Conjugating Enzyme E 1e-04
4ds2_A167 Ubiquitin Conjugating Enzyme (Putative) From Trypan 2e-04
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179 Back     alignment and structure 
Iteration: 1

 Score =  209 bits (533), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 127/155 (81%), Gaps = 4/155 (2%)
Query: 1   MSSPS---KRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPD 57
           MSSPS   +R D DV+KL+ S + V TI  GLNEF V+F+GP+ + YEGGVWK+RV+LPD
Sbjct: 20  MSSPSPGKRRMDTDVIKLIESKHEV-TILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPD 78
Query: 58  AYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPS 117
            YP+KSPSIGF+NKI+HPN+DE SG+VCLDVINQ+W+ ++DL NIFESFLPQLL YPNP 
Sbjct: 79  KYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPI 138
Query: 118 DPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENI 152
           DPLNGDAA++ +   ++Y QK+KEY ++YA +E +
Sbjct: 139 DPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEAL 173
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152 Back     alignment and structure
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171 Back     alignment and structure
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153 Back     alignment and structure
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155 Back     alignment and structure
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152 Back     alignment and structure
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165 Back     alignment and structure
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149 Back     alignment and structure
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153 Back     alignment and structure
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150 Back     alignment and structure
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163 Back     alignment and structure
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157 Back     alignment and structure
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153 Back     alignment and structure
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166 Back     alignment and structure
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152 Back     alignment and structure
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157 Back     alignment and structure
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151 Back     alignment and structure
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165 Back     alignment and structure
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149 Back     alignment and structure
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147 Back     alignment and structure
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152 Back     alignment and structure
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149 Back     alignment and structure
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149 Back     alignment and structure
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153 Back     alignment and structure
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149 Back     alignment and structure
>pdb|1JAS|A Chain A, Hsubc2b Length = 152 Back     alignment and structure
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157 Back     alignment and structure
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146 Back     alignment and structure
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149 Back     alignment and structure
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149 Back     alignment and structure
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155 Back     alignment and structure
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163 Back     alignment and structure
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169 Back     alignment and structure
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148 Back     alignment and structure
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152 Back     alignment and structure
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150 Back     alignment and structure
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165 Back     alignment and structure
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146 Back     alignment and structure
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155 Back     alignment and structure
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154 Back     alignment and structure
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152 Back     alignment and structure
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399 Back     alignment and structure
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148 Back     alignment and structure
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155 Back     alignment and structure
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147 Back     alignment and structure
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147 Back     alignment and structure
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149 Back     alignment and structure
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215 Back     alignment and structure
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156 Back     alignment and structure
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194 Back     alignment and structure
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151 Back     alignment and structure
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149 Back     alignment and structure
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149 Back     alignment and structure
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193 Back     alignment and structure
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169 Back     alignment and structure
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216 Back     alignment and structure
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179 Back     alignment and structure
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156 Back     alignment and structure
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154 Back     alignment and structure
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190 Back     alignment and structure
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202 Back     alignment and structure
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159 Back     alignment and structure
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201 Back     alignment and structure
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217 Back     alignment and structure
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253 Back     alignment and structure
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160 Back     alignment and structure
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167 Back     alignment and structure
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173 Back     alignment and structure
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164 Back     alignment and structure
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158 Back     alignment and structure
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180 Back     alignment and structure
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183 Back     alignment and structure
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155 Back     alignment and structure
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152 Back     alignment and structure
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159 Back     alignment and structure
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157 Back     alignment and structure
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180 Back     alignment and structure
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172 Back     alignment and structure
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161 Back     alignment and structure
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163 Back     alignment and structure
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158 Back     alignment and structure
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159 Back     alignment and structure
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160 Back     alignment and structure
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161 Back     alignment and structure
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163 Back     alignment and structure
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160 Back     alignment and structure
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172 Back     alignment and structure
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172 Back     alignment and structure
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172 Back     alignment and structure
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161 Back     alignment and structure
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161 Back     alignment and structure
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161 Back     alignment and structure
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169 Back     alignment and structure
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158 Back     alignment and structure
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158 Back     alignment and structure
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165 Back     alignment and structure
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168 Back     alignment and structure
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164 Back     alignment and structure
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167 Back     alignment and structure
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170 Back     alignment and structure
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136 Back     alignment and structure
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From Plasmodium Falciparum Length = 136 Back     alignment and structure
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma Cruzi Length = 167 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query184
1ayz_A169 UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin 100.0
2aak_A152 UBC1, ubiquitin conjugating enzyme; ubiquitin conj 100.0
4gpr_A151 Ubiquitin-conjugating enzyme family protein; ubiqu 100.0
2c2v_B154 Ubiquitin-conjugating enzyme E2 N; chaperone, heat 100.0
2bep_A159 Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 100.0
1zdn_A158 Ubiquitin-conjugating enzyme E2S; structural genom 100.0
2ayv_A166 Ubiquitin-conjugating enzyme E2; structural genomi 100.0
3k9o_A201 Ubiquitin-conjugating enzyme E2 K; E2-25K, complex 100.0
2r0j_A149 Ubiquitin carrier protein; ubiquitin conjugating, 100.0
1jat_A155 Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig 100.0
1fxt_A149 Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM 100.0
1z2u_A150 Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro 100.0
2c4o_A165 Ubiquitin-conjugating enzyme E2 D2; thioesterifica 100.0
2onu_A152 Ubiquitin-conjugating enzyme, putative; UBC, plasm 100.0
2ucz_A165 UBC7, ubiquitin conjugating enzyme; ubiquitin conj 100.0
1yh2_A169 HSPC150 protein similar to ubiquitin-conjugating e 100.0
2e2c_A156 Ubiquitin conjugating enzyme; ubiquitin conjugatio 100.0
2gjd_A157 Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT 100.0
3h8k_A164 Ubiquitin-conjugating enzyme E2 G2; alpha beta, al 100.0
2pwq_A216 Ubiquitin conjugating enzyme; structural genomics 100.0
3bzh_A194 Ubiquitin-conjugating enzyme E2 E1; structural gen 100.0
2f4z_A193 Tgtwinscan_2721 - E2 domain; ubiquitin conjugating 100.0
3rcz_B163 SUMO-conjugating enzyme UBC9; SUMO-like domain, pr 100.0
2grr_A161 Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj 100.0
3e46_A253 Ubiquitin-conjugating enzyme E2-25 kDa; huntington 100.0
2z5d_A179 Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig 100.0
1i7k_A179 Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A 100.0
1wzv_A155 Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A 100.0
1tte_A215 Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq 100.0
3fn1_B167 NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin 100.0
1yrv_A169 Ubiquitin-conjugating ligase MGC351130; structural 100.0
3rz3_A183 Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj 100.0
1y8x_A160 Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju 100.0
1yf9_A171 Ubiquitin carrier protein 4; SGPP, structural geno 100.0
2y9m_A172 Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra 100.0
1c4z_D154 UBCH7, ubiquitin conjugating enzyme E2; bilobal st 100.0
2nvu_C180 NEDD8-conjugating enzyme UBC12; multifunction macr 100.0
2awf_A172 Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co 100.0
3o2u_A190 NEDD8-conjugating enzyme UBC12; E2 conjugase, liga 100.0
4ddg_A 399 Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI 100.0
4ds2_A167 Ubiquitin-conjugating enzyme E2, putative; structu 100.0
3ceg_A323 Baculoviral IAP repeat-containing protein 6; apopt 100.0
2fo3_A125 Ubiquitin-conjugating enzyme; SGC, UBC, structural 100.0
2q0v_A156 Ubiquitin-conjugating enzyme E2, putative; malaria 100.0
2h2y_A136 Ubiquitin-conjugating enzyme; structural genomics, 100.0
1jat_B138 Ubiquitin-conjugating enzyme variant MMS2; UEV, li 100.0
2a4d_A160 Ubiquitin-conjugating enzyme E2 variant 1; alterna 100.0
2a7l_A136 Hypothetical ubiquitin-conjugating enzyme LOC55284 100.0
2hlw_A170 Ubiquitin-conjugating enzyme E2 variant 1; ubiquit 100.0
1zuo_A186 Hypothetical protein LOC92912; ligase, ubiquitin-c 100.0
2f4w_A187 Ubiquitin-conjugating enzyme E2, J2; endoplasmic r 100.0
2z6o_A172 UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p 99.92
3r3q_A162 Suppressor protein STP22 of temperature-sensitive 99.76
3kpa_A168 Probable ubiquitin fold modifier conjugating ENZY; 99.64
3obq_A146 Tumor susceptibility gene 101 protein; protein tra 99.42
2ebm_A128 RWD domain-containing protein 1; alpha+beta sandwi 96.36
2yz0_A138 Serine/threonine-protein kinase GCN2; A-B-B-B-B-A- 94.62
2ebk_A128 RWD domain-containing protein 3; alpha+beta sandwi 93.89
2day_A128 Ring finger protein 25; ligase, metal-binding, UB1 93.74
1ukx_A137 GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple 91.75
3zqs_A186 E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A 89.63
2daw_A154 RWD domain containing protein 2; alpha+beta sandwi 87.93
2dax_A152 Protein C21ORF6; RWD domain, alpha+beta sandwich f 86.49
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Back     alignment and structure
Probab=100.00  E-value=1.9e-51  Score=321.85  Aligned_cols=151  Identities=30%  Similarity=0.622  Sum_probs=143.2

Q ss_pred             CCc-hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccccc
Q 030037            1 MSS-PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN   76 (184)
Q Consensus         1 Mss-~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   76 (184)
                      ||+ +.+||++||+++   ++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+|||||
T Consensus         1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN   80 (169)
T 1ayz_A            1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN   80 (169)
T ss_dssp             -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCC
Confidence            876 789999999987   7789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcccccc
Q 030037           77 VDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENIV  153 (184)
Q Consensus        77 V~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~~~  153 (184)
                      |+. +|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+....+
T Consensus        81 I~~-~G~ICl~iL~~~WsP~~~i~~vL~s-i~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~~~~~  155 (169)
T 1ayz_A           81 VYA-NGEICLDILQNRWTPTYDVASILTS-IQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDDMDD  155 (169)
T ss_dssp             BCT-TSBBCCGGGTTTCCTTCCHHHHHHH-HHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCC-CCeEeehhhccCCCCcCcHHHHHHH-HHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCCCccC
Confidence            995 9999999999999999999999988 99999999999999999999999999999999999999999976544
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Back     alignment and structure
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica} Back     alignment and structure
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Back     alignment and structure
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Back     alignment and structure
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Back     alignment and structure
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Back     alignment and structure
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Back     alignment and structure
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Back     alignment and structure
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Back     alignment and structure
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Back     alignment and structure
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Back     alignment and structure
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Back     alignment and structure
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Back     alignment and structure
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Back     alignment and structure
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A Back     alignment and structure
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Back     alignment and structure
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Back     alignment and structure
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Back     alignment and structure
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1 Back     alignment and structure
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Back     alignment and structure
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Back     alignment and structure
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Back     alignment and structure
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Back     alignment and structure
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Back     alignment and structure
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Back     alignment and structure
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Back     alignment and structure
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Back     alignment and structure
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Back     alignment and structure
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Back     alignment and structure
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Back     alignment and structure
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Back     alignment and structure
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Back     alignment and structure
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Back     alignment and structure
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Back     alignment and structure
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Back     alignment and structure
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Back     alignment and structure
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Back     alignment and structure
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Back     alignment and structure
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Back     alignment and structure
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Back     alignment and structure
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A Back     alignment and structure
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A* Back     alignment and structure
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4 Back     alignment and structure
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Back     alignment and structure
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A Back     alignment and structure
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3 Back     alignment and structure
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens} Back     alignment and structure
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3 Back     alignment and structure
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 184
d2z5da1152 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, 8e-44
d1yf9a1158 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, 3e-41
d1y6la_148 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H 3e-33
d1jata_152 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B 4e-33
d2f4za1161 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca 3e-32
d1ayza_153 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B 4e-32
d2bepa1154 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2 5e-32
d1z2ua1147 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U 2e-30
d1fzya_149 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B 4e-29
d1z3da1149 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U 8e-29
d1pzva_161 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N 8e-28
d1j7db_149 d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H 2e-26
d1i7ka_146 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H 3e-26
d1y8xa1157 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, 7e-26
d1c4zd_144 d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H 3e-25
d2e2ca_156 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C 4e-25
d1wzva1150 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U 6e-25
d2uyza1156 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U 1e-24
d2ucza_164 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B 4e-24
d1zdna1151 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U 6e-24
d1yrva1148 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U 1e-23
d1yh2a1154 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U 9e-22
d2f4wa1157 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, 2e-19
d2a4da1139 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, 3e-19
d2a7la1117 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 8e-19
d1s1qa_141 d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10 1e-17
d2awfa1125 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U 1e-16
d1jatb_136 d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B 1e-14
d2fo3a1109 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating 4e-14
d1zuoa1162 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme 2e-13
d1uzxa_152 d.20.1.2 (A:) Vacuolar protein sorting-associated 6e-13
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158 Back     information, alignment and structure
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148 Back     information, alignment and structure
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152 Back     information, alignment and structure
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161 Back     information, alignment and structure
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153 Back     information, alignment and structure
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154 Back     information, alignment and structure
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147 Back     information, alignment and structure
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149 Back     information, alignment and structure
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149 Back     information, alignment and structure
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161 Back     information, alignment and structure
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149 Back     information, alignment and structure
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157 Back     information, alignment and structure
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156 Back     information, alignment and structure
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150 Back     information, alignment and structure
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156 Back     information, alignment and structure
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164 Back     information, alignment and structure
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148 Back     information, alignment and structure
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154 Back     information, alignment and structure
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157 Back     information, alignment and structure
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139 Back     information, alignment and structure
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141 Back     information, alignment and structure
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125 Back     information, alignment and structure
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136 Back     information, alignment and structure
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109 Back     information, alignment and structure
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162 Back     information, alignment and structure
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query184
d1y6la_148 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2bepa1154 Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain 100.0
d1jata_152 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 100.0
d1fzya_149 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 100.0
d1j7db_149 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1z2ua1147 Ubiquitin conjugating enzyme, UBC {Caenorhabditis 100.0
d1yh2a1154 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1z3da1149 Ubiquitin conjugating enzyme, UBC {Nematode (Caeno 100.0
d1zdna1151 Ubiquitin conjugating enzyme, UBC {Human(Homo sapi 100.0
d1ayza_153 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 100.0
d1i7ka_146 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2uyza1156 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2f4za1161 Hypothetical protein Tgtwinscan_2721, E2 domain {T 100.0
d2ucza_164 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 100.0
d1yrva1148 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1wzva1150 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2e2ca_156 Ubiquitin conjugating enzyme, UBC {Clam (Spisula s 100.0
d1yf9a1158 Ubiquitin conjugating enzyme, UBC {Leishmania majo 100.0
d1pzva_161 Ubiquitin conjugating enzyme, UBC {Nematode (Caeno 100.0
d1c4zd_144 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2z5da1152 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1y8xa1157 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2a7la1117 Ubiquitin-protein ligase W (E2 W) {Human (Homo sap 100.0
d2f4wa1157 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2fo3a1109 Putative ubiquitin-conjugating enzyme, E2 domain { 100.0
d2awfa1125 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1jatb_136 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 100.0
d2a4da1139 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1zuoa1162 Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom 100.0
d1s1qa_141 Tumor susceptibility gene 101 (TSG101) {Human (Hom 99.78
d1uzxa_152 Vacuolar protein sorting-associated {Baker's yeast 99.72
d2in1a1162 Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie 96.64
d2daya1115 E3 ubiquitin-protein ligase RNF25 {Human (Homo sap 94.77
d1ukxa_137 EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu 90.35
d2dawa1141 RWD domain-containing protein 2 {Human (Homo sapie 86.76
d2daxa1140 Uncharacterized protein C21orf6 {Human (Homo sapie 86.57
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=5.8e-47  Score=288.49  Aligned_cols=145  Identities=31%  Similarity=0.662  Sum_probs=140.4

Q ss_pred             CchHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccccccc
Q 030037            2 SSPSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD   78 (184)
Q Consensus         2 ss~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   78 (184)
                      |++.|||++|++.+   ++.|+++.+.++|++.|+++|.||.+|||+||+|++.|.||++||+.||+|+|.|+||||||+
T Consensus         1 s~~~kRi~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~   80 (148)
T d1y6la_           1 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNIN   80 (148)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceEC
Confidence            56899999999987   778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 030037           79 EMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAK  148 (184)
Q Consensus        79 ~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~  148 (184)
                      + +|.||++++.++|+|+++|.+||.+ |+.||.+|++++|+|.+|+++|++|+++|.++||+|++|||.
T Consensus        81 ~-~G~iCl~~l~~~W~p~~~l~~il~~-i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~k~A~  148 (148)
T d1y6la_          81 S-QGVICLDILKDNWSPALTISKVLLS-ICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT  148 (148)
T ss_dssp             T-TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             C-CCeEEEEecCCcCCCcEeHHHHHHH-HHHHHhCCCCcccccHHHHHHHHHCHHHHHHHHHHHHHHhCC
Confidence            5 9999999999999999999999988 999999999999999999999999999999999999999985
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Back     information, alignment and structure
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Back     information, alignment and structure
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Back     information, alignment and structure
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Back     information, alignment and structure
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Back     information, alignment and structure
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Back     information, alignment and structure
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Back     information, alignment and structure
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Back     information, alignment and structure
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Back     information, alignment and structure
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Back     information, alignment and structure
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Back     information, alignment and structure
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Back     information, alignment and structure
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Back     information, alignment and structure
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Back     information, alignment and structure
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Back     information, alignment and structure
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Back     information, alignment and structure
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Back     information, alignment and structure
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Back     information, alignment and structure
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Back     information, alignment and structure
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Back     information, alignment and structure
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Back     information, alignment and structure
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Back     information, alignment and structure
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure